1. 基于生物信息学方法分析SOX11与乳腺癌患者 临床参数、预后的关系及其调控通路.
- Author
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张晶, 王崇杰, 门康, 于琼, 于静, and 朱坤兵
- Abstract
Objective Based on the cancer Genome Atlas(TCGA)database,we used the bioinformatics methods to analyze the expression changes of SOX11 in breast cancer,observed the the relationship between SOX11 and clinicopatho‐ logical parameters and prognosis of patients,and analyzed the related regulatory pathways involved in the occurrence and development of breast cancer. Methods SOX11 transcriptomic data and clinicopathological information of patients in breast cancer were downloaded from the cancer genome atlas(TCGA)database. The expression of SOX11 in breast cancer tissues and normal breast tissues was extracted and compared by R program. Taking the median SOX11 expression value (5. 5423)as the limit,897 breast cancer patients with complete clinical data were divided into 459 patients with high SOX11 expression and 438 patients with low SOX11 expression. The clinicopathological parameters(age,Stage,T Stage, lymphatic metastasis,and M Stage)and overall survival(OS),disease-free interval(DFI),disease-specific survival (DSS),and progression-free interval(PFI)were compared between patients with high and low SOX11 expression. The protein-protein interaction(PPI)network diagram was constructed to screen the core genes interacting with SOX11,and Gene Ontology(GO)function and Kyoto Encyclopedia of Genes and Genomes(KEGG)pathway enrichment analysis were performed. Results The expression of SOX11 in the breast cancer tissues was higher than that in normal breast tissues, the expression of SOX11 in Her-2 overexpressed and Basal-like breast cancer tissues was higher than that in Luminal A, Luminal B and Normal-like breast cancer tissues(all P<0. 05). The proportions of age ≤58 years and T1-T2 stage in patients with high SOX11 expression were higher than those of patients with low SOX11 expression,while DSS and PFI were lower than those of patients with low expression(all P<0. 05). There were no statistical differences in the proportions of Stage,lymphatic metastasis,M Stage or OS,DFI between patients with high and low expression of SOX11(all P>0. 05). After the construction of PPI network,313 core genes of SOX11 interaction were obtained,mainly including paired box 6 (PAX6),Zinc finger protein 2 (ZIC2),activating transcription factor 3 (ATF3),Quiescin sulfhydryl oxidase 1 (QSOX1),long non-coding RNA POU3F3,etc. GO functional analysis showed that the interacting genes in PPI network were mainly involved in the biological processes and functions related to cell cycle and cell division. KEGG pathway enrichment analysis showed that the interaction genes in PPI network were mainly enriched in P53,human epidermal growth factor receptor 2(Her-2),FOXO and other signaling pathways. Conclusions The expression of SOX11 is elevated in breast cancer tissues,especially in Her-2 overexpressed and basal-like breast cancer tissues. These results suggest that high expression of SOX11 may promote the development and progression of breast cancer and suggest poor prognosis of patients through p53,Her-2,and FOXO and other signaling pathways. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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