14 results on '"Lekadir, Karim"'
Search Results
2. Effects of Pre- and Postnatal Early-Life Stress on Internalizing, Adiposity, and Their Comorbidity
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Defina, Serena, Woofenden, Tom, Baltramonaityte, Vilte, Pariante, Carmine M., Lekadir, Karim, Jaddoe, Vincent W.V., Serdarevic, Fadila, Tiemeier, Henning, Walton, Esther, Felix, Janine F., and Cecil, Charlotte A.M.
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- 2024
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3. Tackling the implementation gap for the uptake of NGS and advanced molecular diagnostics into healthcare systems
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Horgan, Denis, Van den Bulcke, Marc, Malapelle, Umberto, Troncone, Giancarlo, Normanno, Nicola, Capoluongo, Ettore D., Prelaj, Arsela, Rizzari, Carmelo, Trapani, Dario, Singh, Jaya, Kozaric, Marta, Longshore, John, Ottaviano, Manuel, Boccia, Stefania, Pravettoni, Gabriella, Cattaneo, Ivana, Malats, Núria, Buettner, Reinhard, Lekadir, Karim, de Lorenzo, Francesco, Hofman, Paul, and De Maria, Ruggero
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- 2024
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4. Documenting the de-identification process of clinical and imaging data for AI for health imaging projects.
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Kondylakis, Haridimos, Catalan, Rocio, Alabart, Sara Martinez, Barelle, Caroline, Bizopoulos, Paschalis, Bobowicz, Maciej, Bona, Jonathan, Fotiadis, Dimitrios I., Garcia, Teresa, Gomez, Ignacio, Jimenez-Pastor, Ana, Karatzanis, Giannis, Lekadir, Karim, Kogut-Czarkowska, Magdalena, Lalas, Antonios, Marias, Kostas, Marti-Bonmati, Luis, Munuera, Jose, Nikiforaki, Katerina, and Pelissier, Manon
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DIAGNOSTIC imaging ,COMPUTER-assisted image analysis (Medicine) ,ARTIFICIAL intelligence - Abstract
Artificial intelligence (AI) is revolutionizing the field of medical imaging, holding the potential to shift medicine from a reactive "sick-care" approach to a proactive focus on healthcare and prevention. The successful development of AI in this domain relies on access to large, comprehensive, and standardized real-world datasets that accurately represent diverse populations and diseases. However, images and data are sensitive, and as such, before using them in any way the data needs to be modified to protect the privacy of the patients. This paper explores the approaches in the domain of five EU projects working on the creation of ethically compliant and GDPR-regulated European medical imaging platforms, focused on cancer-related data. It presents the individual approaches to the de-identification of imaging data, and describes the problems and the solutions adopted in each case. Further, lessons learned are provided, enabling future projects to optimally handle the problem of data de-identification. Critical relevance statement: This paper presents key approaches from five flagship EU projects for the de-identification of imaging and clinical data offering valuable insights and guidelines in the domain. Key Points: ΑΙ models for health imaging require access to large amounts of data. Access to large imaging datasets requires an appropriate de-identification process. This paper provides de-identification guidelines from the AI for health imaging (AI4HI) projects. [ABSTRACT FROM AUTHOR]
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- 2024
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5. Image Quality Assessment Tool for Conventional and Dynamic Magnetic Resonance Imaging Acquisitions.
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Nikiforaki, Katerina, Karatzanis, Ioannis, Dovrou, Aikaterini, Bobowicz, Maciej, Gwozdziewicz, Katarzyna, Díaz, Oliver, Tsiknakis, Manolis, Fotiadis, Dimitrios I., Lekadir, Karim, and Marias, Kostas
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MAGNETIC resonance imaging ,IMAGE quality analysis ,SIGNAL-to-noise ratio ,ARTIFICIAL intelligence ,TRUST - Abstract
Image quality assessment of magnetic resonance imaging (MRI) data is an important factor not only for conventional diagnosis and protocol optimization but also for fairness, trustworthiness, and robustness of artificial intelligence (AI) applications, especially on large heterogeneous datasets. Information on image quality in multi-centric studies is important to complement the contribution profile from each data node along with quantity information, especially when large variability is expected, and certain acceptance criteria apply. The main goal of this work was to present a tool enabling users to assess image quality based on both subjective criteria as well as objective image quality metrics used to support the decision on image quality based on evidence. The evaluation can be performed on both conventional and dynamic MRI acquisition protocols, while the latter is also checked longitudinally across dynamic series. The assessment provides an overall image quality score and information on the types of artifacts and degrading factors as well as a number of objective metrics for automated evaluation across series (BRISQUE score, Total Variation, PSNR, SSIM, FSIM, MS-SSIM). Moreover, the user can define specific regions of interest (ROIs) to calculate the regional signal-to-noise ratio (SNR) and contrast-to-noise ratio (CNR), thus individualizing the quality output to specific use cases, such as tissue-specific contrast or regional noise quantification. [ABSTRACT FROM AUTHOR]
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- 2024
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6. Public data homogenization for AI model development in breast cancer.
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Kilintzis, Vassilis, Kalokyri, Varvara, Kondylakis, Haridimos, Joshi, Smriti, Nikiforaki, Katerina, Díaz, Oliver, Lekadir, Karim, Tsiknakis, Manolis, and Marias, Kostas
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BREAST cancer ,MAGNETIC resonance imaging ,ARTIFICIAL intelligence ,MEDICAL communication ,CARCINOGENESIS - Abstract
Background: Developing trustworthy artificial intelligence (AI) models for clinical applications requires access to clinical and imaging data cohorts. Reusing of publicly available datasets has the potential to fill this gap. Specifically in the domain of breast cancer, a large archive of publicly accessible medical images along with the corresponding clinical data is available at The Cancer Imaging Archive (TCIA). However, existing datasets cannot be directly used as they are heterogeneous and cannot be effectively filtered for selecting specific image types required to develop AI models. This work focuses on the development of a homogenized dataset in the domain of breast cancer including clinical and imaging data. Methods: Five datasets were acquired from the TCIA and were harmonized. For the clinical data harmonization, a common data model was developed and a repeatable, documented "extract-transform-load" process was defined and executed for their homogenization. Further, Digital Imaging and COmmunications in Medicine (DICOM) information was extracted from magnetic resonance imaging (MRI) data and made accessible and searchable. Results: The resulting harmonized dataset includes information about 2,035 subjects with breast cancer. Further, a platform named RV-Cherry-Picker enables search over both the clinical and diagnostic imaging datasets, providing unified access, facilitating the downloading of all study imaging that correspond to specific series' characteristics (e.g., dynamic contrast-enhanced series), and reducing the burden of acquiring the appropriate set of images for the respective AI model scenario. Conclusions: RV-Cherry-Picker provides access to the largest, publicly available, homogenized, imaging/clinical dataset for breast cancer to develop AI models on top. Relevance statement: We present a solution for creating merged public datasets supporting AI model development, using as an example the breast cancer domain and magnetic resonance imaging images. Key points: • The proposed platform allows unified access to the largest, homogenized public imaging dataset for breast cancer. • A methodology for the semantically enriched homogenization of public clinical data is presented. • The platform is able to make a detailed selection of breast MRI data for the development of AI models. [ABSTRACT FROM AUTHOR]
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- 2024
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7. Fairness and bias correction in machine learning for depression prediction across four study populations.
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Dang, Vien Ngoc, Cascarano, Anna, Mulder, Rosa H., Cecil, Charlotte, Zuluaga, Maria A., Hernández-González, Jerónimo, and Lekadir, Karim
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MACHINE learning ,FAIRNESS - Abstract
A significant level of stigma and inequality exists in mental healthcare, especially in under-served populations. Inequalities are reflected in the data collected for scientific purposes. When not properly accounted for, machine learning (ML) models learned from data can reinforce these structural inequalities or biases. Here, we present a systematic study of bias in ML models designed to predict depression in four different case studies covering different countries and populations. We find that standard ML approaches regularly present biased behaviors. We also show that mitigation techniques, both standard and our own post-hoc method, can be effective in reducing the level of unfair bias. There is no one best ML model for depression prediction that provides equality of outcomes. This emphasizes the importance of analyzing fairness during model selection and transparent reporting about the impact of debiasing interventions. Finally, we also identify positive habits and open challenges that practitioners could follow to enhance fairness in their models. [ABSTRACT FROM AUTHOR]
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- 2024
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8. Demographic Analysis of Cancer Research Priorities and Treatment Correlations.
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Horgan, Denis, Van den Bulcke, Marc, Malapelle, Umberto, Normanno, Nicola, Capoluongo, Ettore D., Prelaj, Arsela, Rizzari, Carmelo, Stathopoulou, Aliki, Singh, Jaya, Kozaric, Marta, Dube, France, Ottaviano, Manuel, Boccia, Stefania, Pravettoni, Gabriella, Cattaneo, Ivana, Malats, Núria, Buettner, Reinhard, Lekadir, Karim, de Lorenzo, Francesco, and Alix-Panabieres, Catherine
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CANCER research ,OLDER people ,CANCER treatment ,BIOTHERAPY ,AGE groups ,RADIOTHERAPY - Abstract
Understanding the diversity in cancer research priorities and the correlations among different treatment modalities is essential to address the evolving landscape of oncology. This study, conducted in collaboration with the European Cancer Patient Coalition (ECPC) and Childhood Cancer International-Europe (CCI-E) as part of the "UNCAN.eu" initiative, analyzed data from a comprehensive survey to explore the complex interplay of demographics, time since cancer diagnosis, and types of treatments received. Demographic analysis revealed intriguing trends, highlighting the importance of tailoring cancer research efforts to specific age groups and genders. Individuals aged 45–69 exhibited highly aligned research priorities, emphasizing the need to address the unique concerns of middle-aged and older populations. In contrast, patients over 70 years demonstrated a divergence in research priorities, underscoring the importance of recognising the distinct needs of older individuals in cancer research. The analysis of correlations among different types of cancer treatments underscored the multidisciplinary approach to cancer care, with surgery, radiotherapy, chemotherapy, precision therapy, and biological therapies playing integral roles. These findings support the need for personalized and combined treatment strategies to achieve optimal outcomes. In conclusion, this study provides valuable insights into the complexity of cancer research priorities and treatment correlations in a European context. It emphasizes the importance of a multifaceted, patient-centred approach to cancer research and treatment, highlighting the need for ongoing support, adaptation, and collaboration to address the ever-changing landscape of oncology. [ABSTRACT FROM AUTHOR]
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- 2024
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9. Cohort Profile: The Cardiovascular Research Data Catalogue.
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Reinikainen, Jaakko, Palosaari, Tarja, Canosa-Valls, Alejandro J, Schmidt, Carsten O, Wissa, Rita, Chadalavada, Sucharitha, Codó, Laia, Gelpí, Josep Lluís, Joseph, Bijoy, van der Lugt, Aad, Pacella, Elsa, Petersen, Steffen E, Pujadas, Esmeralda Ruiz, Szabo, Liliana, Zeller, Tanja, Niiranen, Teemu, Lekadir, Karim, and Kuulasmaa, Kari
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ATRIAL fibrillation ,NEUROSCIENCES ,CATALOGS ,CATALOGING - Abstract
The Cardiovascular Research Data Catalogue is a web-based catalogue that provides information on cohort studies and variables related to cardiovascular diseases. It currently includes data from 33 individual studies and 2 harmonization initiatives, involving over 1 million participants from 16 countries. The catalogue contains various types of data sources, such as physical measures, questionnaires, and imaging. The metadata and access information for person-level data are freely available without authentication. The catalogue aims to facilitate the discovery and sharing of data for cardiovascular research. [Extracted from the article]
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- 2024
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10. A deep learning solution to detect left ventricular structural abnormalities with chest X-rays: towards trustworthy AI in cardiology.
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Lekadir, Karim
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DEEP learning ,TRUST ,ARTIFICIAL intelligence ,CHESTS (Furniture) ,CARDIAC magnetic resonance imaging - Abstract
The article discusses the challenges and potential of artificial intelligence (AI) in the field of cardiology. It emphasizes the importance of developing trustworthy AI tools that adhere to rigorous standards and testing, gaining trust from patients, clinicians, and regulators. The article highlights a study by Bhave et al. that created a deep learning tool for detecting cardiac structural abnormalities using chest X-rays. The study evaluates the proposed model based on the principles of fairness, universality, traceability, usability, robustness, and explainability. While the study is commendable, there are areas for improvement, such as exploring fairness concerning socio-economic status and conducting prospective evaluation studies with frontline clinicians. Overall, the study sets an example for creating transformative AI in cardiology. [Extracted from the article]
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- 2024
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11. Aligning Cancer Research Priorities in Europe with Recommendations for Conquering Cancer: A Comprehensive Analysis.
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Horgan, Denis, Bulcke, Marc Van den, Malapelle, Umberto, Normanno, Nicola, Capoluongo, Ettore D., Prelaj, Arsela, Rizzari, Carmelo, Stathopoulou, Aliki, Singh, Jaya, Kozaric, Marta, Dube, France, Ottaviano, Manuel, Boccia, Stefania, Pravettoni, Gabriella, Cattaneo, Ivana, Malats, Núria, Buettner, Reinhard, Lekadir, Karim, de Lorenzo, Francesco, and Blanc, Patricia
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TUMOR prevention ,TUMOR treatment ,BIOMARKERS ,THERAPEUTICS ,RESEARCH ,RESEARCH evaluation ,HEALTH services accessibility ,STRATEGIC planning ,PRIORITY (Philosophy) ,ATTITUDE (Psychology) ,WORLD health ,EARLY detection of cancer ,INDIVIDUALIZED medicine ,COMMUNITY health services ,IMMUNE system ,SURVEYS ,ENDOWMENT of research ,HEALTH insurance reimbursement ,PEARSON correlation (Statistics) ,AGING ,DESCRIPTIVE statistics ,POLICY sciences ,STATISTICAL correlation ,DATA analysis software ,CYTOLOGY ,CANCER patient medical care ,MEDICAL research ,EARLY medical intervention ,EVALUATION - Abstract
Improvements in cancer care require a new degree of collaboration beyond the purely medical sphere, extending deeply into the world of other stakeholders—preeminently patients but also the other stakeholders in the hardware and software of care. Cancer remains a global health challenge, necessitating collaborative efforts to understand, prevent, and treat this complex disease. To achieve this goal, a comprehensive analysis was conducted, aligning the prioritization of cancer research measures in 13 European countries with 13 key recommendations for conquering cancer in the region. The study utilized a survey involving both patients and citizens, alongside data from IQVIA, a global healthcare data provider, to assess the availability and access to single-biomarker tests in multiple European countries. The results revealed a focused approach toward understanding, preventing, and treating cancer, with each country emphasizing specific research measures tailored to its strengths and healthcare objectives. This analysis highlights the intricate relationship between research priorities, access to biomarker tests, and financial support. Timely access to tests and increased availability positively influence research areas such as cancer prevention, early detection, ageing, and data utilization. The alignment of these country-specific measures with 13 recommendations for conquering cancer in Europe underscores the importance of tailored strategies for understanding, preventing, and treating cancer. [ABSTRACT FROM AUTHOR]
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- 2024
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12. Digital twins: reimagining the future of cardiovascular risk prediction and personalised care.
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Dziopa K, Lekadir K, van der Harst P, and Asselbergs FW
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The rapid evolution of highly adaptable and reusable artificial intelligence models facilitates the implementation of digital twinning and has the potential to redefine cardiovascular risk prevention. Digital twinning combines vast amounts of data from diverse sources to construct virtual models of an individual. Emerging artificial intelligence models, called generalist AI, enable the processing of different types of data, including data from electronic health records, laboratory results, medical texts, imaging, genomics, or graphs. Among their unprecedented capabilities are an easy adaptation of a model to previously unseen medical tasks and the ability to reason and explain output using precise medical language derived from scientific literature, medical guidelines, or knowledge graphs. The proposed combination of a digital twinning approach with generalist AI is a path to accelerate the implementation of precision medicine and enhance early recognition and prevention of cardiovascular disease. This proposed strategy may extend to other domains to advance predictive, preventive, and precision medicine and also boost health research discoveries., (Copyright © 2024 Hellenic Society of Cardiology. All rights reserved.)
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- 2024
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13. Fetal Head and Pubic Symphysis Segmentation in Intrapartum Ultrasound Image Using a Dual-Path Boundary-Guided Residual Network.
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Chen Z, Lu Y, Long S, Campello VM, Bai J, and Lekadir K
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Accurate segmentation of the fetal head and pubic symphysis in intrapartum ultrasound images and measurement of fetal angle of progression (AoP) are critical to both outcome prediction and complication prevention in delivery. However, due to poor quality of perinatal ultrasound imaging with blurred target boundaries and the relatively small target of the public symphysis, fully automated and accurate segmentation remains challenging. In this paper, we propse a dual-path boundary-guided residual network (DBRN), which is a novel approach to tackle these challenges. The model contains a multi-scale weighted module (MWM) to gather global context information, and enhance the feature response within the target region by weighting the feature map. The model also incorporates an enhanced boundary module (EBM) to obtain more precise boundary information. Furthermore, the model introduces a boundary-guided dual-attention residual module (BDRM) for residual learning. BDRM leverages boundary information as prior knowledge and employs spatial attention to simultaneously focus on background and foreground information, in order to capture concealed details and improve segmentation accuracy. Extensive comparative experiments have been conducted on three datasets. The proposed method achieves average Dice score of 0.908 ±0.05 and average Hausdorff distance of 3.396 ±0.66 mm. Compared with state-of-the-art competitors, the proposed DBRN achieves better results. In addition, the average difference between the automatic measurement of AoPs based on this model and the manual measurement results is 6.157
° , which has good consistency and has broad application prospects in clinical practice.- Published
- 2024
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14. Regional and temporal differences in the associations between cardiovascular disease and its classic risk factors: an analysis of 49 cohorts from 11 European countries.
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Reinikainen J, Kuulasmaa K, Oskarsson V, Amouyel P, Biasch K, Brenner H, De Ponti R, Donfrancesco C, Drygas W, Ferrieres J, Grassi G, Grimsgaard S, Iacoviello L, Jousilahti P, Kårhus LL, Kee F, Linneberg A, Luksiene D, Mariño J, Moitry M, Palmieri L, Peters A, Piwonska A, Quarti-Trevano F, Salomaa V, Sans S, Schmidt CO, Schöttker B, Söderberg S, Tamosiunas A, Thorand B, Tunstall-Pedoe H, Vanuzzo D, Veronesi G, Woodward M, Lekadir K, and Niiranen T
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- Male, Humans, Risk Factors, Cholesterol, Europe epidemiology, Cardiovascular Diseases diagnosis, Cardiovascular Diseases epidemiology, Cardiovascular Diseases etiology, Diabetes Mellitus diagnosis, Diabetes Mellitus epidemiology
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Aims: The regional and temporal differences in the associations between cardiovascular disease (CVD) and its classic risk factors are unknown. The current study examined these associations in different European regions over a 30-year period., Methods and Results: The study sample comprised 553 818 individuals from 49 cohorts in 11 European countries (baseline: 1982-2012) who were followed up for a maximum of 10 years. Risk factors [sex, smoking, diabetes, non-HDL cholesterol, systolic blood pressure (BP), and body mass index (BMI)] and CVD events (coronary heart disease or stroke) were harmonized across cohorts. Risk factor-outcome associations were analysed using multivariable-adjusted Cox regression models, and differences in associations were assessed using meta-regression. The differences in the risk factor-CVD associations between central Europe, northern Europe, southern Europe, and the UK were generally small. Men had a slightly higher hazard ratio (HR) in southern Europe (P = 0.043 for overall difference), and those with diabetes had a slightly lower HR in central Europe (P = 0.022 for overall difference) compared with the other regions. Of the six CVD risk factors, minor HR decreases per decade were observed for non-HDL cholesterol [7% per mmol/L; 95% confidence interval (CI), 3-10%] and systolic BP (4% per 20 mmHg; 95% CI, 1-8%), while a minor HR increase per decade was observed for BMI (7% per 10 kg/m2; 95% CI, 1-13%)., Conclusion: The results demonstrate that all classic CVD risk factors are still relevant in Europe, irrespective of regional area. Preventive strategies should focus on risk factors with the greatest population attributable risk., Competing Interests: Conflict of interest: M.W. has done consultancy work for Amgen and Freeline in the last 3 years. V.S. has had research collaboration with Bayer Ltd (unrelated to the present study). All other authors declare no conflict of interest., (© The Author(s) 2023. Published by Oxford University Press on behalf of the European Society of Cardiology. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
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- 2024
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