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It is well accepted that global circulation models equipped with stable water isotopologues help us better understand the relationships between atmospheric circulation changes and isotope records in paleoclimate archives. Still, isotope-enabled models do not disentangle the different processes affecting precipitation isotopic compositions. Furthermore, the relevance of this model-oriented approach relies on the realism of the modeled isotope results, which would support the interpretation of the proxy records in terms of modeled climate changes. To alleviate these limitations, the newly developed WRF-Hydro-iso-tag, a version of the isotope-enabled regional coupled model WRF-Hydro-iso enhanced with an isotope-tracing procedure, is presented. Physics-based WRF-Hydro-iso-tag ensembles are used to regionally downscale the isotope-enabled Community Earth System Model for southern Africa, for two 10-yr slices of mid-Holocene and preindustrial times. The isotope-tracing procedure is tailored to assess the origin of the hydrogen isotope deuterium contained in southern African precipitation, between the Atlantic and Indian Oceans. In comparison to the global model, WRF-Hydro-iso-tag simulates lower precipitation amounts with more regional details, as well as mid-Holocene-to-preindustrial changes in precipitation isotopic compositions that better match plant-wax deuterium records from two marine sediment cores off the Orange and Limpopo River basins. Linear relationships between mid-Holocene-to-preindustrial changes in temperature, precipitation amount, moisture source, and precipitation deuterium compositions are derived from the ensemble results. A deuterium enrichment in the Orange River-related sediment core may not be related to an aridification but rather indicate a summer circulation change enabling a larger contribution of more isotopically enriched moisture from the Atlantic Ocean. Significance Statement: The knowledge of past climates is crucial for understanding our Earth system and apprehending future climate change. Plant materials in sediment archives contain atoms of hydrogen from past precipitation that allow paleoclimate reconstructions, using compositions of the hydrogen isotope deuterium. However, in the tropics, deuterium-depleted plant remains can either denote a wetter climate phase or a change in atmospheric circulation patterns with longer distances between ocean evaporation and land precipitation. This work provides an innovative dynamical downscaling method of global paleoclimate models to disentangle the effects of precipitation amount change and moisture source change on deuterium records, and ultimately to improve paleoclimate reconstructions. The interpretation of a deuterium enrichment in a marine sediment core as a marker for aridification is revised. The enrichment caused by an atmospheric circulation change bringing a larger amount of more isotopically enriched moisture flow from the Atlantic Ocean to southern African precipitation would be a more physically sound explanation. [ABSTRACT FROM AUTHOR]