Diagenesis plays a crucial role in shale oil reservoir formation. However, complex organic-inorganic interactions result in pore system formation and heterogeneity changes at the centimeter, or even micrometer scale, which controls the evolution of shale oil reservoirs. In this paper, an integrated approach including core observation, thin section observation, cathodoluminescence thin section observation, scanning electron microscope, μ-XRF analysis, electron microprobe analysis, AMICS analysis, LA-ICP-MS analysis, and isotope analysis was used to clarify the laminae combination carbonate-rich shale, diagenetic alterations in different types of shale laminae and the controls on shale oil reservoir formation. According to the lamina combination, the carbonate-rich shale in the Permian Lucaogou Formation can be divided into three types. They are shale consists of dolomitic lamina and terrigenous felsic lamina (Type A shale), shale consists of calcite-rich tufaceous lamina and terrigenous felsic lamina (Type B shale) and shale consists of calcareous lamina and tufaceous lamina (Type C shale). Dolomite cementation is the major diagenesis in terrigenous felsic lamina of Type A shale. The dolomite can be identified as the early stage forming from recrystallization of micrite dolomite, and the late stage precipitate from adjacent dolomitic lamina. In the terrigenous felsic lamina of Type B shale, however, the calcite cementation is the dominated diagenesis, which was sourced from adjacent calcite-rich tufaceous lamina. Also, some feldspar dissolutions occurred in terrigenous felsic lamina during organic matter evolution. For the Type C shale, the main diagenetic alteration is micrite calcite recrystallization in calcareous lamina. The dissolution and precipitation of carbonate minerals between different laminae of carbonate-rich shale reveal that the organic matter evolution significantly influence the diagenetic alterations of inorganic minerals. Particularly, the diagenetic mass transfer and redistribution at the micro-scale in a relatively diagenetic system were confirmed by organic-inorganic interactions in laminated shale. In this process, dissolution pores and recrystallization pores have provided considerable reservoir pores for shale oil. • The laminae combination and diagenetic alterations of carbonate-rich shale were identified. • The diagenetic mass transfer at the micro-scale during organic-inorganic interactions in laminated shale were clarified. • The pores induced by diagenetic mass transfer within a closed system is crucial for shale reservoir formation. [ABSTRACT FROM AUTHOR]