13,275 results
Search Results
2. Template for a Hypothesis Description paper
- Author
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Tina Heger, Daniel Mietchen, and Jonathan M. Jeschke
- Subjects
formalization ,formalized hypotheses ,manuscript t ,Science - Abstract
Hypothesis Descriptions are a type of manuscript dedicated to the formal description of a hypothesis, as introduced in an accompanying editorial and an examplary Hypothesis Description for the Enemy Release Hypothesis that is used in invasion biology. This questionnaire provides a template for such a Hypothesis Description manuscript. The template's format was designed for simplicity to facilitate adoption, and it can be easily extended to capture additional information, e.g. instructions for falsification or generalization, taxonomic or geographic scope, etymology, or relevant information in other research fields or other languages. The template reflects the recommended structure for a Hypothesis Description manuscript in that each of its sections provides the title for a section in a Hypothesis Description manuscript and indicates whether that section is mandatory or optional. Four sections - Keywords (mandatory), Conflicts of interest (optional), Acknowledgments (optional) and References (mandatory) - are in this template filled in for the template itself but should otherwise be adjusted for the hypothesis at hand. Comments to guide authors who work on a Hypothesis Description manuscript are provided as well.
- Published
- 2024
- Full Text
- View/download PDF
3. Colorimetric paper-based device for rapid screening of orlistat in weight loss supplements
- Author
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Panadda Phattanawasin, Theerasak Rojanarata, and Nusara Piyapolrungroj
- Subjects
Pharmacy and materia medica ,RS1-441 - Abstract
The colorimetric paper-based device using lipase inhibition assay was developed for rapid and visual detection of orlistat in weight loss supplements. The paper device with five circular detection zones was simply fabricated from filter paper No 1 using a low-cost paper craft puncher with a design of a flower-like shape. The enzymatic reaction on the detection zone employed a small volume of a substrate, a-naphthyl acetate, a sample, and a lipase enzyme. After incubation, the Fast Blue B solution was used as a chromogenic reagent. The decrease in purple color can be observed by the naked eye, in the presence of orlistat. Under optimized conditions, the paper device showed satisfactory sensitivity and selectivity. The device was applied for rapid screening of orlistat in weight loss supplements and the results agreed with those obtained from TLC analysis.
- Published
- 2023
- Full Text
- View/download PDF
4. Graduation Paper as a Tool of Assessing Professional Aptitude of a Translator (Bachelor’s Degree)
- Author
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Elena Porshneva, Irina Alekseeva, Irina Zinovyeva, and Irina V. Piven Nikitina
- Subjects
practice-oriented training ,graduation paper ,prof ,Science - Abstract
New market realities in the translation industry and elsewhere require an innovative approach to the content of higher education and a refocus on soft and hard skills. A prospective translator shall possess communicative skills, be capable of critical thinking, self-management, teamwork, engage in project activities, as well be creative, intellectually flexible, and digitally literate.New trends in the profession are conducive to revising educational strategies for graduation papers (GP) written by undergraduates. GPs are still theory-oriented, thus failing to meet the pragmatic needs of the translation industry, and lack correlation with hands-on professional activities. Bachelor GPs seem especially challenging, since neither Russian education authorities, nor academic instructors have a clear-cut vision of the bachelor's degree training and its specific nature. Most often, the bachelor’s degree is deemed as a simplified version of the specialist’s degree.The professional standard and the Federal State Educational Standard on Linguistics provide that graduates shall have general cultural, general professional, and professional competences (PCs). If mastered, these competences will qualify graduates for independent professional activities outside the academic institution. This paper presents feasibility study results for practice-oriented GPs. These results are analyzed to see if such GPs match relevant translation problems and if a new practice-oriented method can be used as a tool to assess graduates’ professional aptitude for independent translation activities. The authors discourse upon effectiveness of this tool in education based on LUNN case study. The selection scope covers GPs written in 2015–2020, their number exceeding 200.
- Published
- 2022
- Full Text
- View/download PDF
5. A new species of the paper wasp genus Ropalidia Guérin-Méneville, plebeja group (Hymenoptera, Vespidae, Polistinae), from Vietnam
- Author
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Hoa Thi Quynh Bui, Thai Van Mai, and Lien Thi Phuong Nguyen
- Subjects
Zoology ,QL1-991 - Abstract
A new species, Ropalidia daklak Bui, Mai & Nguyen, sp. nov., belonging to the plebeja-group of the genus Ropalidia Guérin-Méneville, 1831 is described and figured based on females and males from Vietnam. The nest structure of the new species is described, and an updated key is provided to all known species of the group.
- Published
- 2023
- Full Text
- View/download PDF
6. Nesting of the keyhole wasp Pachodynerus nasidens (Latreille, 1812) (Vespidae, Eumeninae) in a nest of a paper wasp (Vespidae, Polistinae)
- Author
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Gabriel de Castro Jacques, Wellington Donizet Ferreira, Paola Aparecida Moura, Gabriel Teofilo-Guedes, and Marcos Magalhães de Souza
- Subjects
Zoology ,QL1-991 - Abstract
Potter wasps (Hymenoptera, Vespidae, Eumeninae) adopt different substrates for nesting, including other wasp nests. Nevertheless, such behavior rarely occurs with abandoned nests of the paper wasps (Hymenoptera, Vespidae, Polistinae). In this study, we report the occurrence involving the nesting of a potter wasp on a paper wasp’s nest. Such a record occurred in November 2021 in a segment of a deciduous forest, at Mata Seca State Park, Southeast Brazil. An abandoned Polistinae nest was found, with 14 cells sealed with mud, from which four male Pachodynerus nasidens individuals emerged. This record of P. nasidens reusing a Polistinae’s nest increases our knowledge of Eumeninae nesting strategies and on possible associations between different groups of vespid wasps.
- Published
- 2022
- Full Text
- View/download PDF
7. How editors can help authors write better papers: Beyond journals and articles
- Author
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Ana Marusic and Matko Marusic
- Subjects
Croatia ,individual mentoring ,medical students ,Academies and learned societies ,AS1-945 ,Bibliography. Library science. Information resources - Abstract
We present the experience of journal editors in improving the quality of published papers. As the editors of the Croatian Medical Journal, a journal from the so-called scientific periphery, we realized, very early after the start of the journal in 1991, that our authors needed significant assistance with their articles. We worked individually with journal authors and then moved this activity to the next stage – intensive workshops for authors. The work with the journals enabled us to extend these activities to graduate and postgraduate students – future authors.
- Published
- 2022
- Full Text
- View/download PDF
8. Forty years of invasion research: more papers, more collaboration...bigger impact?
- Author
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Sara E. Campbell and Daniel Simberloff
- Subjects
Biology (General) ,QH301-705.5 - Abstract
Scientific research has become increasingly collaborative. We systematically reviewed invasion science literature published between 1980 and 2020 and catalogued in Clarivate Analytics Web of Science to examine patterns of authorship and the relationship between co-authorship and annual citation rates. This study analysed 27,234 publications across 1,218 journals and demonstrated that, as the number of publications in invasion science has exponentially increased, the number of authors publishing per year and the average number of authors per paper have also increased. The rising number of authors per paper coincides with a marked decline of single-authored publications; approximately 92% of publications in this dataset were multi-authored, with single-authored papers comprising less than 4% of all papers published in 2020. The increase in multi-authored papers is likely driven by multiple factors, including the widespread perception that collaboration increases scientific quality. The number of authors is positively correlated with perceived research impact; papers with two or more authors produce research that is more frequently cited compared to single-authored papers, and papers with five or more authors have annual citation rates almost double that of single-authored papers. The complexity, context-dependence and urgency of biological invasions contributed to the rise of the highly collaborative field of modern invasion science.
- Published
- 2022
- Full Text
- View/download PDF
9. LifeWatch ERIC: papers collection on original datasets and new e-services for the biodiversity and ecosystems' scientific community.
- Author
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Arvanitidis C, Basset A, van Tienderen P, de Moncuit L, Huertas Olivares CI, Di Muri C, Mellado A, and Los W
- Abstract
Papers including articles that are produced because of the activities of LifeWatch ERIC, in the context of its second implementation period (2022 - 2026) and through the implementation of its new Strategic Working Plan, are published in this special collection. The articles include data papers, papers describing the development and functioning of analytical services and papers describing any other research outcome, produced either by LifeWatch ERIC or by any collaboration with any other ERIC, Research Infrastructure, global aggregator or other legal entity., Competing Interests: No conflict of interest to declare Disclaimer: This article is (co-)authored by any of the Editors-in-Chief, Managing Editors or their deputies in this journal., (Christos Arvanitidis, Alberto Basset, Peter van Tienderen, Lucas de Moncuit, Cristina Isabel Huertas Olivares, Cristina Di Muri, Ana Mellado, Wouter Los.)
- Published
- 2024
- Full Text
- View/download PDF
10. A new species of paper wasp from the genus Ropalidia Guérin-Méneville from South Africa (Hymenoptera, Vespidae)
- Author
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Ozren Polašek, Terence Bellingan, and Simon van Noort
- Subjects
Zoology ,QL1-991 - Abstract
Ropalidia amabala sp. nov. is described and compared to the known African species of this genus. In addition, the nest and nesting habits are described. This species demonstrates the nesting pattern previously recorded only in Madagascar, which includes nesting directly on a tree trunk and using lichen as the nest-building source material to blend in with the surrounding lichen patches. In contrast to the Malagasy species, which clean the nesting area of lichen, this new South African species constructs the nest in a clear area of the trunk between patches of lichen. This provides excellent visual concealment of the nest and suggests that visually driven predators are the primary selective factor. The morphology for both sexes of this species disagrees with known Malagasy species, suggesting that they are separate evolutionary lineages and hence that this nesting behaviour evolved independently.
- Published
- 2022
- Full Text
- View/download PDF
11. Barriers to writing research papers and getting them published, as perceived by Turkish physicians – a cross sectional study
- Author
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Rabia Gönül Sezer Yamanel, Pınar Kumru, Semra Kayataş Eser, and Ayşenur Celayir
- Subjects
academic writing ,language barriers ,English as a ,Academies and learned societies ,AS1-945 ,Bibliography. Library science. Information resources - Abstract
Background: Many physicians in Turkey are both clinicians and researchers, and publishing their research contributes to better patient care as well as to career advancement.Objective: To identify the barriers faced by Turkish physicians to writing research papers and getting them published.Methods: Respondents were asked, through eight multiple-choice questions, about the difficulties they faced in writing research papers and in getting them published in journals. We also searched published literature for accounts of similar difficulties and answers to the question ‘What is your purpose in writing scientific publications?’Results: A total of 18% (155 of 871) of physicians completed the questionnaire. About the difficulties faced in writing, 82 out of the 155 participants, or 57%, reported problems in finding financial support; 58 (40%), in obtaining required permissions and clearances; 65 (45%), in acquiring relevant skills, especially those related to data analysis or statistics; and 42 (29%), in language-related skills. About the difficulties in getting their papers published in journals, 85 (60%) said that they tried to overcome the difficulties by searching for appropriate solutions on the internet; 66 (47%) sought help from experienced colleagues; and 47 (33%) needed professional help in English translation and editing. Need for financial support was reported by a significantly (p = 0.04) larger proportion of associate professors or full professors (69%) than that of residents (47%) and fellows (45%).Conclusion: The main problems that Turkish physicians face in preparing scientific manuscripts were lack of financial support, inadequate knowledge of data analysis and statistics, and the paperwork involved in obtaining required approvals and permissions—problems that were common to the departments of internal medicine and of surgery. The primary motivation for writing and publishing was career advancement, especially through promotion to a higher academic rank.
- Published
- 2021
- Full Text
- View/download PDF
12. The fauna of aquatic invertebrates in the river impacted by wastewaters from the pulp and paper industry (Komi Republic)
- Author
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Maria Baturina, Olga Kononova, Elena Fefilova, and Olga Loskutova
- Subjects
sampling event ,benthos and plankton invertebrates ,Biology (General) ,QH301-705.5 - Abstract
Invertebrates are important elements of aquatic ecosystems and play a crucial role in the transformation of matter and energy in continental water bodies. Communities of aquatic invertebrates are characterised by high sensitivity to pollution by nutrients and toxic substances and acidification of water bodies; they serve as good bioindicators of the quality of the aquatic environment and impacts on hydroecosystems. All hydrobionts participate in the processes of self-purification of water bodies.The presented dataset provides information on the aquatic invertebrate community of a large northern river. During 2018-2020, we collected data on changes in the quantitative indicators of the development of benthic and planktonic communities, as well as the species diversity of their fauna. The dataset combines information about the occurrence and abundance of benthic and planktonic invertebrates and summarises data of aquatic invertebrate species found in the Vychegda River in the zone of influence from the pulp and paper mill.The presented dataset is part of a monitoring programme of the river ecosystems in the production area of Mondi Syktyvkar JSC (the European North-East of Russia, Komi Republic). The dataset describes the structure of benthic invertebrate and plankton communities in the Northern Dvina River Basin. The data on the finding and abundance of large taxa of aquatic invertebrates and species of some groups: Oligochaeta, Cladocera, Copepoda, Rotifera, Ephemeroptera, Plecoptera and Trichoptera are presented. In total, the resource includes 8720 findings of invertebrates, of which 6041 are for zoobenthos organisms and 2679 for zooplankton organisms.
- Published
- 2021
- Full Text
- View/download PDF
13. Errata and retractions associated with research papers published by authors with Hungarian affiliations
- Author
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Jaime Teixeira da Silva and Mohammadamin Erfanmanesh
- Subjects
correction index ,publishing integrity ,publishing ,Academies and learned societies ,AS1-945 ,Bibliography. Library science. Information resources - Abstract
Background: To examine the errata and retractions in total published output of Hungarian research and academia relative to that in 34 other European countries.Objective: To analyse the number of errata and retractions related to papers published by authors with Hungarian affiliations compared to those by authors with affiliations in the 34 other countries.Methods: Errata and retractions retrieved from three databases, namely Retraction Watch, Web of Science (WoS), and Scopus, were counted and sorted by country.Results: Scopus featured 7 retractions linked to Hungarian affiliations and WoS featured 10. Retraction Watch featured 26 such retractions, placing Hungary in 23rd position among the 35 countries arranged in descending order of the number of retractions. Of the 26 retractions from Hungary, 5 were in Elsevier journals and another 5 in Springer Nature; also, 8 of the 26 were associated with the University of Debrecen. When ranked for the number of errata notices for every 1000 published papers, Hungary was ranked 29th in WoS (2.54 notices per 1000 papers) and 26th in Scopus (2.3 notices per 1000 papers).Conclusions: The low numbers of Hungarian affiliations suggest that either research ethics are more stringently observed in Hungary or that publications from Hungarian research institutes, including papers in Hungarian – many Hungarian journals are indexed neither in WoS nor in Scopus – have not been scrutinized adequately through post-publication peer review.
- Published
- 2021
- Full Text
- View/download PDF
14. White paper on the alignment and interoperability between the Distributed System of Scientific Collections (DiSSCo) and EU infrastructures - The case of the European Environment Agency (EEA)
- Author
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Niels Raes, Ana Casino, Hilary Goodson, Sharif Islam, Dimitrios Koureas, Edmund Schiller, Leif Schulman, Laura Tilley, and Tim Robertson
- Subjects
Science policy interface ,DiSSCo ,EEA ,interoperab ,Science - Abstract
The Distributed System of Scientific Collections (DiSSCo) Research Infrastructure (RI) is presently in its preparatory phase. DiSSCo is developing a new distributed RI to operate as a one-stop-shop for the envisaged European Natural Science Collection (NSC) and all its derived information. Through mass digitisation, DiSSCo will transform the fragmented landscape of NSCs, including an estimated 1.5 billion specimens, into an integrated knowledge base that will provide interconnected evidence of the natural world. Data derived from European NSCs underpin countless discoveries and innovations, including tens of thousands of scholarly publications and official reports annually (supporting legislative and regulatory processes on sustainability, environmental change, land use, societal infrastructure, health, food, security, etc.); base-line biodiversity data; inventions and products essential to bio-economy; databases, maps and descriptions of scientific observations; educational material for students; and instructive and informative resources for the public. To expand the user community, DiSSCo will strengthen capacity building across Europe for maximum engagement of stakeholders in the biodiversity-related field and beyond, including industry and the private sector, but also policy-driving entities. Hence, it is opportune to reach out to relevant stakeholders in the European environmental policy domain represented by the European Environment Agency (EEA). The EEA aims to support sustainable development by helping to achieve significant and measurable improvement in Europe's environment, through the provision of timely, targeted, relevant and reliable information to policy-making agents and the public. The EEA provides information through the European Environment Information and Observation System (Eionet). The aim of this white paper is to open the discussion between DiSSCo and the EEA and identify the common service interests that are relevant for the European environmental policy domain. The first section describes the significance of (digital) Natural Science Collections (NHCs). Section two describes the DiSSCo programme with all DiSSCo aligned projects. Section three provides background information on the EEA and the biodiversity infrastructures that are developed and maintained by the EEA. The fourth section illustrates a number of use cases where the DiSSCo consortium sees opportunities for interaction between the DiSSCo RI and the Eionet portal of the EEA. Opening the discussion with the EEA in this phase of maturity of DiSSCo will ensure that the infrastructural design of DiSSCo and the development of e-Services accommodate the present and future needs of the EEA and assure data interoperability between the two infrastructures.The aim of this white paper is to present benefits from identifying the common service interests of DiSSCo and the EEA. A brief introduction to natural science collections as well as the two actors is given to facilitate the understanding of the needs and possibilities in the alignment of DiSSCo with the EEA.
- Published
- 2020
- Full Text
- View/download PDF
15. Russia and post-Soviet countries compared: coverage of papers by Scopus and Web of Science, languages, and productivity of researchers
- Author
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Natalia Alimova and Yuri Brumshteyn
- Subjects
ethical guidelines in journal instructions ,multil ,Academies and learned societies ,AS1-945 ,Bibliography. Library science. Information resources - Abstract
Objective: To analyse the productivity of post-Soviet countries, adjusted by population, in terms of research papers published and the proportions of those papers indexed by Scopus and the Web of Science.Methods: Relevant data on the journals indexed in Scopus and the Web of Science were analysed. Where required, data were also extracted from Russian Science Citation Index databases and websites of journals.Results: On average, the post-Soviet countries had 31 researchers per 10,000 people. The average numbers of publications per researcher in journals indexed by Scopus was 1.04 and the corresponding figure for the Web of Science was 0.87. In terms of the number of journals indexed in Scopus and the Web of Science, the leading countries were Estonia, Latvia and Lithuania.Conclusion: Although the post-Soviet countries differed considerably in terms of bibliometric indices, the overall values were low. Main features of the journals were as follows: articles published in national languages – in Russian in many cases – and in English, articles mostly by authors within the region, and only a minority of foreigners as members of editorial boards. Thus most of the journals cannot be considered international. All the journals examined have websites in a national language and/or in English and invariably carry information on ethical practices, although such information is not given in a uniform format and varies from country to country.
- Published
- 2020
- Full Text
- View/download PDF
16. Retractions of research papers by authors from the Arab region (1998-2018)
- Author
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Saif Aldeen AlRyalat, Muayad Azzam, Abdallah Massad, and Dana Alqatawneh
- Subjects
Duplication ,fabrication ,plagiarism ,retraction ,Academies and learned societies ,AS1-945 ,Bibliography. Library science. Information resources - Abstract
Objective: To provide an overview of retractions of research papers contributed by authors from the Arab region.Method: Papers in which the first author was affiliated to an Arabian country were selected from the Retraction Watch database covering the period 1 January 1998 to 31 December 2018. The retrieved records were divided into nine categories based on the reasons for retraction.Results: The search yielded 322 retractions, and the most frequent reason for retraction was plagiarism (34.5%). The median time from publication to retraction was 14 (25%-75% percentile 5-30) months. The number of papers retracted each year as well as the number of papers published in a given year but subsequently retracted increased steadily over the 21 years. The proportion of retracted papers to the total number of published papers (0.17%) was higher than the global proportion and was the highest for Algeria (1%) and the lowest for Lebanon (0.03%). Of the countries within the Arab region, 12 out of 14 countries showed either plagiarism or duplication as the most common reason for retraction; however, the countries differed in terms of the number of retractions and the time from publishing to retraction.Conclusion: Plagiarism was the most common cause of retraction in the Arab countries. The increase in the number of papers retracted each year was probably because searches now extend farther in the past, whereas the increase in the number of papers published in a given year but subsequently retracted can be attributed to the overall increase in the number of papers published.
- Published
- 2020
- Full Text
- View/download PDF
17. Taxonomic notes on the paper wasps of the subgenus Polistes (Gyrostoma) (Hymenoptera, Vespidae, Polistinae) occurring in Vietnam, with description of a new species
- Author
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Lien Thi Phuong Nguyen and James Carpenter
- Subjects
Zoology ,QL1-991 - Abstract
Taxonomy of the paper wasps of the subgenus Gyrostoma of the polistine genus Polistes from Vietnam is treated, with a key to all the five species occurring in Vietnam, including one described herein as new to science under the name Polistes longus sp. nov. Nests of P. gigas and P. longus sp. nov. are also described.
- Published
- 2019
- Full Text
- View/download PDF
18. The fauna of aquatic invertebrates in the river impacted by wastewaters from the pulp and paper industry (Komi Republic).
- Author
-
Baturina, Maria, Kononova, Olga, Fefilova, Elena, and Loskutova, Olga
- Subjects
AQUATIC invertebrates ,INDUSTRIAL wastes ,PAPER industry ,BIOINDICATORS - Abstract
Background Invertebrates are important elements of aquatic ecosystems and play a crucial role in the transformation of matter and energy in continental water bodies. Communities of aquatic invertebrates are characterised by high sensitivity to pollution by nutrients and toxic substances and acidification of water bodies; they serve as good bioindicators of the quality of the aquatic environment and impacts on hydroecosystems. All hydrobionts participate in the processes of self-purification of water bodies. The presented dataset provides information on the aquatic invertebrate community of a large northern river. During 2018-2020, we collected data on changes in the quantitative indicators of the development of benthic and planktonic communities, as well as the species diversity of their fauna. The dataset combines information about the occurrence and abundance of benthic and planktonic invertebrates and summarises data of aquatic invertebrate species found in the Vychegda River in the zone of influence from the pulp and paper mill. New information The presented dataset is part of a monitoring programme of the river ecosystems in the production area of Mondi Syktyvkar JSC (the European North-East of Russia, Komi Republic). The dataset describes the structure of benthic invertebrate and plankton communities in the Northern Dvina River Basin. The data on the finding and abundance of large taxa of aquatic invertebrates and species of some groups: Oligochaeta, Cladocera, Copepoda, Rotifera, Ephemeroptera, Plecoptera and Trichoptera are presented. In total, the resource includes 8720 findings of invertebrates, of which 6041 are for zoobenthos organisms and 2679 for zooplankton organisms. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
19. Nesting of the keyhole wasp Pachodynerus nasidens (Latreille, 1812) (Vespidae, Eumeninae) in a nest of a paper wasp (Vespidae, Polistinae).
- Author
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de Castro Jacques, Gabriel, Ferreira, Wellington Donizet, Moura, Paola Aparecida, Teofilo-Guedes, Gabriel, and de Souza, Marcos Magalhães
- Subjects
- *
VESPIDAE , *DECIDUOUS forests , *NESTS , *WASPS , *HYMENOPTERA , *PARKS - Abstract
Potter wasps (Hymenoptera, Vespidae, Eumeninae) adopt different substrates for nesting, including other wasp nests. Nevertheless, such behavior rarely occurs with abandoned nests of the paper wasps (Hymenoptera, Vespidae, Polistinae). In this study, we report the occurrence involving the nesting of a potter wasp on a paper wasp's nest. Such a record occurred in November 2021 in a segment of a deciduous forest, at Mata Seca State Park, Southeast Brazil. An abandoned Polistinae nest was found, with 14 cells sealed with mud, from which four male Pachodynerus nasidens individuals emerged. This record of P. nasidens reusing a Polistinae's nest increases our knowledge of Eumeninae nesting strategies and on possible associations between different groups of vespid wasps. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
20. Review on the paper Reversed Crystal Growth
- Author
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Pavel P. Fedorov
- Subjects
Electronics ,TK7800-8360 - Abstract
Review on the paper Wuzong Zhou, Reversed Crystal Growth. Crystals. 2019; 9(1): 7 (16 pp). https://doi.org/10.3390/cryst9010007
- Published
- 2021
- Full Text
- View/download PDF
21. Template for a Hypothesis Description paper.
- Author
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Heger, Tina, Mietchen, Daniel, and Jeschke, Jonathan M.
- Subjects
STATISTICAL hypothesis testing ,METHODOLOGY ,AUTOMATION ,MANUSCRIPTS ,KNOWLEDGE management - Abstract
Hypothesis Descriptions are a type of manuscript dedicated to the formal description of a hypothesis, as introduced in an accompanying editorial and an examplary Hypothesis Description for the Enemy Release Hypothesis that is used in invasion biology. This questionnaire provides a template for such a Hypothesis Description manuscript. The template's format was designed for simplicity to facilitate adoption, and it can be easily extended to capture additional information, e.g. instructions for falsification or generalization, taxonomic or geographic scope, etymology, or relevant information in other research fields or other languages. The template reflects the recommended structure for a Hypothesis Description manuscript in that each of its sections provides the title for a section in a Hypothesis Description manuscript and indicates whether that section is mandatory or optional. Four sections - Keywords (mandatory), Conflicts of interest (optional), Acknowledgments (optional) and References (mandatory) - are in this template filled in for the template itself but should otherwise be adjusted for the hypothesis at hand. Comments to guide authors who work on a Hypothesis Description manuscript are provided as well. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
22. Forty years of invasion research: more papers, more collaboration...bigger impact?
- Author
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Campbell, Sara E. and Simberloff, Daniel
- Subjects
- *
SCIENCE publishing , *WEB analytics , *BIOLOGICAL invasions , *ELECTRONIC publications - Abstract
Scientific research has become increasingly collaborative. We systematically reviewed invasion science literature published between 1980 and 2020 and catalogued in Clarivate Analytics Web of Science to examine patterns of authorship and the relationship between co-authorship and annual citation rates. This study analysed 27,234 publications across 1,218 journals and demonstrated that, as the number of publications in invasion science has exponentially increased, the number of authors publishing per year and the average number of authors per paper have also increased. The rising number of authors per paper coincides with a marked decline of single-authored publications; approximately 92% of publications in this dataset were multi-authored, with single-authored papers comprising less than 4% of all papers published in 2020. The increase in multi-authored papers is likely driven by multiple factors, including the widespread perception that collaboration increases scientific quality. The number of authors is positively correlated with perceived research impact; papers with two or more authors produce research that is more frequently cited compared to single-authored papers, and papers with five or more authors have annual citation rates almost double that of single-authored papers. The complexity, context-dependence and urgency of biological invasions contributed to the rise of the highly collaborative field of modern invasion science. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
23. A machine-compiled microbial supertree from figure-mining thousands of papers
- Author
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Ross Mounce, Peter Murray-Rust, and Matthew Wills
- Subjects
Phylogenetics ,Supertree ,Microbes ,Systematics ,Science - Published
- 2017
- Full Text
- View/download PDF
24. Compartmentalized reference list in an academic publication: Helping the reader to gain a more comprehensive understanding of an academic paper
- Author
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Jari Sarja
- Subjects
Science - Published
- 2017
- Full Text
- View/download PDF
25. Suggestions for fortifying the discoverability of papers published in European Science Editing
- Author
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Jaime Teixeira da Silva
- Subjects
Academies and learned societies ,AS1-945 ,Bibliography. Library science. Information resources - Abstract
European Science Editing (ESE), a platinum open access journal, is gaining recognition as one of the prime outlets for publishing-related topics, as evidenced by its 2019 rise into the second quarter of Scimago’s Journal Rankings and by its Scopus CiteScore of 1.3. However, the discoverability of knowledge and information in ESE is currently limited by the fact that manuscripts published before 2003 are not indexed, that none of the papers published before May 2016 have a DOI, and that not all information that appears on the html version of a paper appears on its PDF version, and vice versa. Finally, because ESE is already indexed in the Directory of Open Access Journals, all papers should be archived on that platform. Such improvements would undoubtedly take time and some resources, but if they could be achieved, the discoverability of the journal would clearly be fortified.
- Published
- 2020
- Full Text
- View/download PDF
26. A new species of the paper wasp genus Ropalidia Guérin-Méneville, plebeja group (Hymenoptera, Vespidae, Polistinae), from Vietnam
- Author
-
Bui, Hoa Thi Quynh, Mai, Thai Van, and Nguyen, Lien Thi Phuong
- Subjects
new species ,Vespidae ,Vespoidea ,R. plebeja group ,Insecta ,Arthropoda ,Vietnam ,Polistinae ,Nest ,Animalia ,Ropalidia ,Biota ,Hymenoptera - Abstract
A new species, Ropalidia daklak Bui, Mai & Nguyen, sp. nov., belonging to the plebeja-group of the genus Ropalidia Guérin-Méneville, 1831 is described and figured based on females and males from Vietnam. The nest structure of the new species is described, and an updated key is provided to all known species of the group.
- Published
- 2023
27. Response to Jaime A Teixeira da Silva's article, 'Suggestions for fortifying the discoverability of papers published in European Science Editing'
- Author
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Tom Lang
- Subjects
Academies and learned societies ,AS1-945 ,Bibliography. Library science. Information resources - Published
- 2020
- Full Text
- View/download PDF
28. Online direct import of specimen records into manuscripts and automatic creation of data papers from biological databases
- Author
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Viktor Senderov, Teodor Georgiev, and Lyubomir Penev
- Subjects
biodiversity informatics ,bioinformatics ,seman ,Science - Published
- 2016
- Full Text
- View/download PDF
29. Errata and retractions associated with research papers published by authors with Hungarian affiliations
- Author
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Mohammadamin Erfanmanesh and Jaime A. Teixeira da Silva
- Subjects
Web of science ,Communication ,Scopus ,publishing integrity ,Library science ,Health Informatics ,publishing record ,Bibliography. Library science. Information resources ,retraction index ,AS1-945 ,retractions ,publishing ,Web of Science ,Academies and learned societies ,Psychology ,correction index - Abstract
Background: To examine the errata and retractions in total published output of Hungarian research and academia relative to that in 34 other European countries. Objective: To analyse the number of errata and retractions related to papers published by authors with Hungarian affiliations compared to those by authors with affiliations in the 34 other countries. Methods: Errata and retractions retrieved from three databases, namely Retraction Watch, Web of Science (WoS), and Scopus, were counted and sorted by country. Results: Scopus featured 7 retractions linked to Hungarian affiliations and WoS featured 10. Retraction Watch featured 26 such retractions, placing Hungary in 23rd position among the 35 countries arranged in descending order of the number of retractions. Of the 26 retractions from Hungary, 5 were in Elsevier journals and another 5 in Springer Nature; also, 8 of the 26 were associated with the University of Debrecen. When ranked for the number of errata notices for every 1000 published papers, Hungary was ranked 29th in WoS (2.54 notices per 1000 papers) and 26th in Scopus (2.3 notices per 1000 papers). Conclusions: The low numbers of Hungarian affiliations suggest that either research ethics are more stringently observed in Hungary or that publications from Hungarian research institutes, including papers in Hungarian – many Hungarian journals are indexed neither in WoS nor in Scopus – have not been scrutinized adequately through post-publication peer review.
- Published
- 2021
30. The diversity of microorganisms inhabiting the sludge tanks of Baikalsk pulp and paper plant (BPPP)
- Author
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A. N. Suturin and V. V. Malnik
- Subjects
0106 biological sciences ,Flocculation ,Hypha ,Polyacrylamide ,микробиологическая деструкция ,Plant Science ,macromolecular substances ,надшламовая вода ,engineering.material ,01 natural sciences ,complex mixtures ,chemistry.chemical_compound ,010608 biotechnology ,Байкальский ЦБК ,Lignin ,Food science ,lcsh:QH301-705.5 ,Ecology, Evolution, Behavior and Systematics ,Nature and Landscape Conservation ,Global and Planetary Change ,Ecology ,biology ,Pulp (paper) ,fungi ,technology, industry, and agriculture ,food and beverages ,biology.organism_classification ,chemistry ,lcsh:Biology (General) ,шлам-лигнин ,Insect Science ,engineering ,Animal Science and Zoology ,Bacteria ,010606 plant biology & botany - Abstract
The wastes from the Baikalsk pulp and paper plant, including the by-products of the plant’s bleaching unit are stored in the special disposal reservoirs in the form of a sludge-lignin, which consists of lignin, polyacrylamide and flocculants. Here, we report on microbiological composition of sludge-lignin: we detected fungi hyphae, actinomycete hyphae, long and short rods as well as coccal forms of bacteria. Interestingly, despite the diversity of bacterial, cyanobacterial and fungal communities no noticeable destruction of lignin was observed. We recommend to use specific chemical compounds and microbiological agents for destruction of sludge-lignin.
- Published
- 2017
31. The authorship of the taxa in the paper of Lienig & Zeller, 1846
- Author
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Reinhard Gaedike
- Subjects
Biology (General) ,QH301-705.5 - Abstract
The authorships of the taxa described in the paper of Lienig & Zeller, 1846, are discussed. The authorship of all species newly described in this paper should be assigned to both. A list of the taxa newly described in that paper and their current taxonomic status is provided.
- Published
- 2014
- Full Text
- View/download PDF
32. A new species of paper wasp from the genus Ropalidia Guérin-Méneville from South Africa (Hymenoptera, Vespidae).
- Author
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Polašek, Ozren, Bellingan, Terence, and van Noort, Simon
- Subjects
- *
VESPIDAE , *NEST building , *NESTS , *SPECIES , *WASPS , *TREE trunks , *BRACONIDAE - Abstract
Ropalidia amabala sp. nov. is described and compared to the known African species of this genus. In addition, the nest and nesting habits are described. This species demonstrates the nesting pattern previously recorded only in Madagascar, which includes nesting directly on a tree trunk and using lichen as the nest-building source material to blend in with the surrounding lichen patches. In contrast to the Malagasy species, which clean the nesting area of lichen, this new South African species constructs the nest in a clear area of the trunk between patches of lichen. This provides excellent visual concealment of the nest and suggests that visually driven predators are the primary selective factor. The morphology for both sexes of this species disagrees with known Malagasy species, suggesting that they are separate evolutionary lineages and hence that this nesting behaviour evolved independently. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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- View/download PDF
33. A new species of the paper wasp genus Polistes (Hymenoptera, Vespidae, Polistinae) in Europe revealed by morphometrics and molecular analyses
- Author
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Rainer Neumeyer, Hannes Baur, Gaston-Denis Guex, and Christophe Praz
- Subjects
Zoology ,QL1-991 - Abstract
We combine multivariate ratio analysis (MRA) of body measurements and analyses of mitochondrial and nuclear data to examine the status of several species of European paper wasps (Polistes Latreille, 1802) closely related to P. gallicus. Our analyses unambiguously reveal the presence of a cryptic species in Europe, as two distinct species can be recognized in what has hitherto been considered Polistes bischoffi Weyrauch, 1937. One species is almost as light coloured as P. gallicus, and is mainly recorded from Southern Europe and Western Asia. The other species is darker and has a more northern distribution in Central Europe. Both species occur syntopically in Switzerland. Given that the lost lectotype of P. bischoffi originated from Sardinia, we selected a female of the southern species as a neotype. The northern species is described as P. helveticus sp. n. here. We also provide a redescription of P. bischoffi rev. stat. and an identification key including three more closely related species, P. biglumis, P. gallicus and P. hellenicus.
- Published
- 2014
- Full Text
- View/download PDF
34. Distribution and nests of paper wasps of Polistes (Polistella) in northeastern Vietnam, with description of a new species (Hymenoptera, Vespidae, Polistinae)
- Author
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Lien Nguyen and Jun-ichi Kojima
- Subjects
Zoology ,QL1-991 - Abstract
Seven species of the subgenus Polistella Ashmead of the genus Polistes Latreille including a new species, P.brunetus Nguyen & Kojima, sp. n. described here, are recognized to occur in northeastern Vietnam, the easternmost part of the eastern slope of the Himalayas. A key to these species is provided. Their distributional records are remarked. Nests of P. delhiensis Das & Gupta, P. mandarinus de Saussure and P.brunetus are also described.
- Published
- 2014
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- View/download PDF
35. A review of regulating ecosystem services in the context of urban planning.
- Author
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Stoycheva, Vanya and Geneletti, Davide
- Subjects
ECOSYSTEM services ,URBAN planning ,AIR quality ,URBAN ecology ,HUMIDITY - Abstract
There is a high growing demand for regulating ecosystem services such as air quality regulation, regulation of air temperature and humidity, and flood regulation, in urban ecosystems which is important for urban planning. A comprehensive review of the current studies of the urban ecosystem, regulating ecosystem services, and their connection with urban planning actions is needed. The current paper presents such a review conducted in six stages to evaluate the state-of-the-art of regulating ecosystem services and their relationship with urban planning. It includes 58 papers selected after a precise keywords search and developed by publication screening, defining indicators, developing an assessment template, and meta-analysis of the results. The analyses are focused on spatial data used in the studies, the methods applied for ecosystem services assessment, and the relationships between regulating ecosystem services, urban planning, and green infrastructure. The most studied regulating ecosystem services within reviewed publications are regulation of chemical composition of atmosphere and oceans, regulation of temperature and humidity, including ventilation and transpiration, and hydrological cycle and water flow regulation (including flood control, and coastal protection). Although urban planningrelated papers are only 1/3 of the pool of papers, appropriate results have been obtained for assessing the urban planning-regulating ecosystem services relation. The review also identified some significant knowledge gaps that can be used as a starting point for future studies. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
36. Semantic tagging of and semantic enhancements to systematics papers: ZooKeys working examples
- Author
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Lyubomir Penev, Donat Agosti, Teodor Georgiev, Terry Catapano, Jeremy Miller, Vladimir Blagoderov, David Roberts, Vincent Smith, Irina Brake, Simon Ryrcroft, Ben Scott, Norman Johnson, Robert Morris, Guido Sautter, Vishwas Chavan, Tim Robertson, David Remsen, Pavel Stoev, Cynthia Parr, Sandra Knapp, W. John Kress, Frederic Thompson, and Terry Erwin
- Subjects
Zoology ,QL1-991 - Abstract
The concept of semantic tagging and its potential for semantic enhancements to taxonomic papers is outlined and illustrated by four exemplar papers published in the present issue of ZooKeys. The four papers were created in different ways: (i) written in Microsoft Word and submitted as non-tagged manuscript (doi: 10.3897/zookeys.50.504); (ii) generated from Scratchpads and submitted as XML-tagged manuscripts (doi: 10.3897/zookeys.50.505 and doi: 10.3897/zookeys.50.506); (iii) generated from an author’s database(doi: 10.3897/zookeys.50.485) and submitted as XML-tagged manuscript. XML tagging and semantic enhancements were implemented during the editorial process of ZooKeys using the Pensoft Mark Up Tool (PMT), specially designed for this purpose. The XML schema used was TaxPub, an extension to the Document Type Definitions (DTD) of the US National Library of Medicine Journal Archiving and Interchange Tag Suite (NLM). The following innovative methods of tagging, layout, publishing and disseminating the content were tested and implemented within the ZooKeys editorial workflow: (1) highly automated, fine-grained XML tagging based on TaxPub; (2) final XML output of the paper validated against the NLM DTD for archiving in PubMedCentral; (3) bibliographic metadata embedded in the PDF through XMP (Extensible Metadata Platform); (4) PDF uploaded after publication to the Biodiversitry Heritage Library (BHL); (5) taxon treatments supplied through XML to Plazi; (6) semantically enhanced HTML version of the paper encompassing numerous internal and external links and linkouts, such as: (i) vizualisation of main tag elements within the text (e.g., taxon names, taxon treatments, localities, etc.); (ii) internal cross-linking between paper sections, citations, references, tables, and figures; (iii) mapping of localities listed in the whole paper or within separate taxon treatments; (v) taxon names autotagged, dynamically mapped and linked through the Pensoft Taxon Profile (PTP) to large international database services and indexers such as Global Biodiversity Information Facility (GBIF), National Center for Biotechnology Information (NCBI), Barcode of Life, Encyclopedia of Life (EOL), ZooBank, Wikipedia, Wkispecies, Wikimedia, and others; (vi) GenBank accession numbers autotagged and linked to NCBI; (vii) external links of taxon names to references in PubMed, Google Scholar, Biodiversity Heritage Library and other sources. With the launching of the working example, ZooKeys becomes the first taxonomic journal to provide a complete XML-based editorial, publication and dissemination workflow implemented as a routine and cost-efficient practice. It is anticipated that XML-based workflow will also soon be implemented in botany through PhytoKeys, a forthcoming partner journal of ZooKeys. The semantic markup and enhancements are expected to greatly extend and accelerate the way taxonomic information is published, disseminated and used.
- Published
- 2010
- Full Text
- View/download PDF
37. A new species of the paper wasp genus Polistes (Hymenoptera, Vespidae, Polistinae) in Europe revealed by morphometrics and molecular analyses.
- Author
-
Neumeyer, Rainer, Baur, Hannes, Guex, Gaston-Denis, and Praz, Christophe
- Subjects
- *
PAPER wasps , *MORPHOMETRICS , *CYTOCHROME oxidase , *GENETIC barcoding , *MULTIVARIATE analysis , *PRINCIPAL components analysis - Abstract
We combine multivariate ratio analysis (MRA) of body measurements and analyses of mitochondrial and nuclear data to examine the status of several species of European paper wasps (Polistes Latreille, 1802) closely related to P. gallicus. Our analyses unambiguously reveal the presence of a cryptic species in Europe, as two distinct species can be recognized in what has hitherto been considered Polistes bischoffi Weyrauch, 1937. One species is almost as light coloured as P. gallicus, and is mainly recorded from Southern Europe and Western Asia. The other species is darker and has a more northern distribution in Central Europe. Both species occur syntopically in Switzerland. Given that the lost lectotype of P. bischoffi originated from Sardinia, we selected a female of the southern species as a neotype. The northern species is described as P. helveticus sp. n. here. We also provide a redescription of P. bischoffi rev. stat. and an identification key including three more closely related species, P. biglumis, P. gallicus and P. hellenicus. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
38. Introduction to Botany of the Marquesas Islands: new taxa and combinations papers
- Author
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David Lorence and Warren Wagner
- Subjects
Botany ,QK1-989 - Published
- 2011
- Full Text
- View/download PDF
39. Fauna of some families of Coleoptera (Insecta) in the Republic of Mordovia (Russia)
- Author
-
L.V. Egorov, Alexander Ruchin, Sergei Alekseev, Oleg Artaev, Evgeniy Lobachev, Sergei Lukiyanov, and Gennadiy Semishin
- Subjects
dataset ,faunistic records ,data paper ,Elateridae ,Biology (General) ,QH301-705.5 - Abstract
Biodiversity conservation is an important goal of most ecosystem management efforts. Therefore, proper monitoring of biodiversity requires constant attention. Coleoptera should be monitored as an essential part of the overall biodiversity. Special monitoring is needed for families that are active as predators (e.g. Coccinellidae) or are saproxylic species (e.g. Elateridae and Cerambycidae). The aim of the research is to describe the fauna of seven families of Coleoptera (Elateridae, Drilidae, Lycidae, Lampyridae, Cantharidae, Coccinellidae and Cerambycidae) of the Republic of Mordovia (the centre of the European part of Russia). The results are based on faunistic research, the main part of which was carried out in April-October 2007-2023 and on material from museum collections. The collecting was made using several different methods (by hand, light trapping, on different lures, into pitfall traps etc.). GPS coordinates are given for each faunistic record.The dataset contains information on seven species new to the region: Malthodes flavoguttatus Kiesenwetter, 1852, Malthodes minimus (Linnaeus, 1758) (Cantharidae); Scymnus rubromaculatus (Goeze, 1777) (Coccinellidae); Anoplodera rufipes ventralis Heyden, 1886, Tragosoma depsarium (Linnaeus, 1767), Xylotrechus arvicola (Olivier, 1795) and Xylotrechus ibex (Gebler, 1825) (Cerambycidae).
- Published
- 2024
- Full Text
- View/download PDF
40. ZooKeys, unlocking Earth’s incredible biodiversity and building a sustainable bridge into the public domain: From 'print-based' to 'web-based' taxonomy, systematics, and natural history. ZooKeys Editorial Opening Paper
- Author
-
Lyubomir Penev, Terry Erwin, F. Christian Thompson, Hans-Dieter Sues, Michael Engel, Donat Agosti, Richard Pyle, Michael Ivie, Thorsten Assmann, Thomas Henry, Jeremy Miller, Natalia Ananjeva, Achille Casale, Wilson Lourenco, Sergei Golovatch, Hans-Peter Fagerholm, Stefano Taiti, Miguel Alonso-Zarazaga, and Erik van Nieukerken
- Subjects
Zoology ,QL1-991 - Abstract
Publishing taxonomic and systematics studies in the digital era faces major challenges and requires new approaches, many of which are currently stimulating spirited discussions amongst taxonomists and systematists. New amendments to the International Code of Zoological Nomenclature are expected to regulate electronic publishing of new taxa and create a standard form for their registration (ZooBank). Responding to a perceived need, this editorial announces establishment of ZooKeys – a new online and print journal in zoological taxonomy and systematics, which aims to quickly respond and adapt to the newest developments in taxonomic publishing. Open Access is accepted as mandatory for ZooKeys. Th e rationale for and concept of ZooKeys is discussed in detail.
- Published
- 2008
- Full Text
- View/download PDF
41. First record of Ephemeropsis, Coptoclava, Coleoptera inc. sed. and Turfanograpta from Lower Cretaceous paper-shales of the western-most site of Mongolia
- Author
-
H. Jähnichen and E. Kahlert
- Subjects
Paleontology ,QE701-760 - Abstract
Nymph-fragments (and detached cerci) of the may-fly Ephemeropsis trisetalis Eichwald and the water-beetle Coptoclava longipoda Ping, a coleopteran and a shell-fragment of the conchostracan Turfanograpta sp. are described for the first time from Lower Cretaceous paper-shales of Bajan-Khongor, Mongolia. The assemblage Lycoptera (fishes included in the Order Osteoglossiformes, Fam. Lycopteridae)-Ephemeropsis-Coptoclava correlates with Lower Cretaceous deposits in Transbaikalia, Mongolia and North-Eastern China. The fern-species Adiantopteris sewardi (Yabe) Vassiljevskaja and Adiantopteris toyoraënsis (Oishi) Vassiljevskaja occur in fine-sandstones of Bajan-Khongor (Jähnichen & Kahlert 1972). Their importance as Early Cretaceous flora-elements is discussed.Larvenfragmente und isolierte Cerci der Eintagsfliege Ephemeropsis trisetalis Eichwald und vom Wasserkäfer Coptoclava longipoda Ping, und ein Schalenfragment der Conchostrake Turfanograpta sp. werden erstmalig aus unterkretazischen Dysodilen von Bajan-Khongor in der Mongolei beschrieben. Die Faunengemeinschaft Lycoptera (Fische der Ordnung Osteoglossiformes, Fam. Lycopteridae)-Ephemeropsis-Coptoclava tritt gleichzeitig in unterkretazischen Ablagerungen von Transbaikalien, Mongolei, und im nordöstlichen China auf. Das Vorkommen der Farnspezies Adiantopteris sewardi (Yabe) Vassil-jevskaja und Adiantopteris toyoraënsis (Oishi) Vassiljevskaja in Feinsandsteinen von Bajan-Khongor (Jähnichen & Kahlert 1972) und deren Wichtigkeit als unterkretazische Florenelemente werden diskutiert.doi:10.1002/mmng.20000030104
- Published
- 2000
- Full Text
- View/download PDF
42. Publishing online identification keys in the form of scholarly papers
- Author
-
Lyubomir Penev, Pierfilippo Cerretti, Hans-Peter Tschorsnig, Massimo Lopresti, Filippo Di Giovanni, Teodor Georgiev, Pavel Stoev, and Terry Erwin
- Subjects
Zoology ,QL1-991 - Published
- 2012
- Full Text
- View/download PDF
43. White paper on the alignment and interoperability between the Distributed System of Scientific Collections (DiSSCo) and EU infrastructures - The case of the European Environment Agency (EEA)
- Author
-
Raes, Niels, Casino, Ana, Goodson, Hilary, Islam, Sharif, Koureas, Dimitrios, Schiller, Edmund, Schulman, Leif, Tilley, Laura, and Robertson, Tim
- Subjects
Research Infrastructure ,DiSSCo ,interoperability ,EEA ,Science policy interface - Abstract
The Distributed System of Scientific Collections (DiSSCo) Research Infrastructure (RI) is presently in its preparatory phase. DiSSCo is developing a new distributed RI to operate as a one-stop-shop for the envisaged European Natural Science Collection (NSC) and all its derived information. Through mass digitisation, DiSSCo will transform the fragmented landscape of NSCs, including an estimated 1.5 billion specimens, into an integrated knowledge base that will provide interconnected evidence of the natural world. Data derived from European NSCs underpin countless discoveries and innovations, including tens of thousands of scholarly publications and official reports annually (supporting legislative and regulatory processes on sustainability, environmental change, land use, societal infrastructure, health, food, security, etc.); base-line biodiversity data; inventions and products essential to bio-economy; databases, maps and descriptions of scientific observations; educational material for students; and instructive and informative resources for the public. To expand the user community, DiSSCo will strengthen capacity building across Europe for maximum engagement of stakeholders in the biodiversity-related field and beyond, including industry and the private sector, but also policy-driving entities. Hence, it is opportune to reach out to relevant stakeholders in the European environmental policy domain represented by the European Environment Agency (EEA). The EEA aims to support sustainable development by helping to achieve significant and measurable improvement in Europe's environment, through the provision of timely, targeted, relevant and reliable information to policy-making agents and the public. The EEA provides information through the European Environment Information and Observation System (Eionet). The aim of this white paper is to open the discussion between DiSSCo and the EEA and identify the common service interests that are relevant for the European environmental policy domain. The first section describes the significance of (digital) Natural Science Collections (NHCs). Section two describes the DiSSCo programme with all DiSSCo aligned projects. Section three provides background information on the EEA and the biodiversity infrastructures that are developed and maintained by the EEA. The fourth section illustrates a number of use cases where the DiSSCo consortium sees opportunities for interaction between the DiSSCo RI and the Eionet portal of the EEA. Opening the discussion with the EEA in this phase of maturity of DiSSCo will ensure that the infrastructural design of DiSSCo and the development of e-Services accommodate the present and future needs of the EEA and assure data interoperability between the two infrastructures.The aim of this white paper is to present benefits from identifying the common service interests of DiSSCo and the EEA. A brief introduction to natural science collections as well as the two actors is given to facilitate the understanding of the needs and possibilities in the alignment of DiSSCo with the EEA.
- Published
- 2020
44. Unlocking Index Animalium: From paper slips to bytes and bits
- Author
-
Martin Kalfatovic, Suzanne Pilsk, Alvin Hutchinson, and Joel Richard
- Subjects
0106 biological sciences ,Digitization ,Metadata ,Markup language ,Computer science ,010607 zoology ,computer.file_format ,Linked data ,010603 evolutionary biology ,01 natural sciences ,World Wide Web ,Identification (information) ,Index (publishing) ,Forum Paper ,Animal Science and Zoology ,RDF ,Citation ,computer ,Ecology, Evolution, Behavior and Systematics ,Linked Open Data - Abstract
In 1996 Smithsonian Libraries (SIL) embarked on the digitization of its collections. By 1999, a full-scale digitization center was in place and rare volumes from the natural history collections, often of high illustrative value, were the focus for the first years of the program. The resulting beautiful books made available for online display were successful to a certain extent, but it soon became clear that the data locked within the texts needed to be converted to more usable and re-purposable form via digitization methods that went beyond simple page imaging and included text conversion elements. Library staff met with researchers from the taxonomic community to understand their path to the literature and identified tools (indexes and bibliographies) used to connect to the library holdings. The traditional library metadata describing the titles, which made them easily retrievable from the shelves of libraries, was not meeting the needs of the researcher looking for more detailed and granular data within the texts. The result was to identify proper print tools that could potential assist researchers in digital form. This paper outlines the project undertaken to convert Charles Davies Sherborn's Index Animalium into a tool to connect researchers to the library holdings: from a print index to a database to eventually a dataset. Sherborn's microcitation of a species name and his bibliographies help bridge the gap between taxonomist and literature holdings of libraries. In 2004, SIL received funding from the Smithsonian's Atherton Seidell Endowment to create an online version of Sherborn's Index Animalium. The initial project was to digitize the page images and re-key the data into a simple data structure. As the project evolved, a more complex database was developed which enabled quality field searching to retrieve species names and to search the bibliography. Problems with inconsistent abbreviations and styling of his bibliographies made the parsing of the data difficult. Coinciding with the development of the Biodiversity Heritage Library (BHL) in 2005, it became obvious there was a need to integrate the database converted Index Animalium, BHL's scanned taxonomic literature, and taxonomic intelligence (the algorithmic identification of binomial, Latinate name-strings). The challenges of working with legacy taxonomic citation, computer matching algorithms, and making connections have brought us to today's goal of making Sherborn available and linked to other datasets. Partnering with others to allow machine-to-machine communications the data is being examined for possible transformation into RDF markup and meeting the standards of Linked Open Data. SIL staff have partnered with Thomson Reuters and the Global Names Initiative to further enhance the Index Animalium data set. Thomson Reuters' staff is now working on integrating the species microcitation and species name in the ION: Index to Organism Names project; Richard Pyle (The Bishop Museum) is also working on further parsing of the text. The Index Animalium collaborative project's ultimate goal is to successful have researchers go seamlessly from the species name in either ION or the scanned pages of Index Animalium to the digitized original description in BHL - connecting taxonomic researchers to original authored species descriptions with just a click.
- Published
- 2016
45. Background: Silverfish are known as one of the major pests which feed on paper and starch-based materials and can cause serious problems in museums, libraries and archives. Ctenolepisma calvum (Ritter, 1910) was first recorded from Ceylon (now Sri Lanka) and has also been known from Central American countries including Guyana and Cuba. Recently, its rapid spread to European countries, including Austria, Czech, Germany and Norway, has been reported. In addition, there are unverified records of C. calvum from 17 more countries in the on-line citizen-science platforms iNaturalist. New information: We report C. calvum in Japan for the first time, from Hokkaido, Miyagi, Tokyo, Fukuoka and Nagasaki Prefectures. The specimens in Japan were observed in detail by stereomicroscope, optical microscope and scanning electron microscope. The occurrence of this species is a serious problem from the viewpoint of protection of cultural properties. We also registered their mitochondrial cytochrome oxidase I (COI) gene in EMBL/GenBank/DDBJ.
- Author
-
Megumi Shimada, Hiroki Watanabe, Yukio Komine, Rika Kigawa, and Yoshinori Sato
- Subjects
SILVER hake ,DISSECTING microscopes ,SPECIES diversity ,SPECIES distribution ,GEOGRAPHICAL distribution of fungi - Abstract
Background: Silverfish are known as one of the major pests which feed on paper and starch-based materials and can cause serious problems in museums, libraries and archives. Ctenolepisma calvum (Ritter, 1910) was first recorded from Ceylon (now Sri Lanka) and has also been known from Central American countries including Guyana and Cuba. Recently, its rapid spread to European countries, including Austria, Czech, Germany and Norway, has been reported. In addition, there are unverified records of C. calvum from 17 more countries in the on-line citizen-science platforms iNaturalist. New information: We report C. calvum in Japan for the first time, from Hokkaido, Miyagi, Tokyo, Fukuoka and Nagasaki Prefectures. The specimens in Japan were observed in detail by stereomicroscope, optical microscope and scanning electron microscope. The occurrence of this species is a serious problem from the viewpoint of protection of cultural properties. We also registered their mitochondrial cytochrome oxidase I (COI) gene in EMBL/GenBank/DDBJ. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
46. The use of species traits in invasive seaweed research: a systematic review.
- Author
-
Mabey, Abigail L., Rius, Marc, Smale, Dan A., and Catford, Jane A.
- Subjects
MARINE algae ,INTRODUCED species ,EVIDENCE gaps ,RESEARCH questions ,UNDARIA pinnatifida ,SARGASSUM ,INVASIVE plants - Abstract
Species traits have been used extensively in invasion science, providing common metrics across taxa and ecosystems that enable comparisons based on the functional responses and effects of biota. However, most work on traits in invasion science has focused on terrestrial plants, despite the vulnerability of aquatic ecosystems to invasive species, such as invasive seaweeds. Research that focuses on individual species of invasive seaweeds has intensified in recent years, yet few studies have synthesised the information learned on species traits to identify commonalities or knowledge gaps in invasion science. Through a systematic review of 322 papers that investigate the traits of seaweed species from across the globe, here we ask - what are the trends and gaps in research that investigates traits of invasive seaweeds? To address this question, we aimed to: (1) identify publication rates and characteristics of the studies examining traits of invasive seaweeds; (2) clarify which and how many species have been investigated; and (3) assess which traits have been measured and how those traits have been used. Our review revealed that study regions for research on invasive seaweed traits were concentrated in Europe and North America. In addition, we found a total of 158 species that have been investigated, with a large proportion of studies (35%) focusing on just two species, Sargassum muticum and Undaria pinnatifida. Our study revealed that the most researched traits were morphological, which were used to address a wide range of research questions. Key research gaps included relatively few studies from Africa, Asia and South America, a lack of papers researching more than one species and a lack of measurements of biomechanical traits. Altogether, this review provides a thorough overview of research progress on species traits of invasive seaweeds and highlights the existing knowledge gaps that may lead to new ways in which the traits of invasive seaweeds can be used to answer important ecological questions. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
47. Scientific abstracts: Texts, contexts, and subtexts
- Author
-
Thomas A. Lang
- Subjects
Abstracts of research papers ,conference proceedin ,Academies and learned societies ,AS1-945 ,Bibliography. Library science. Information resources - Abstract
In their 4000-year history, abstracts have taken several forms and represented a variety of documents. The scientific journal emerged in the 1600s and gave rise to what would become the modern scientific abstract. Here, I describe the contexts in which abstracts evolved, address the subtexts of opinions about their purpose, and review the texts of 12 kinds of abstracts. For most readers, articles do not exist beyond abstracts. However, the quality of abstracts is often poor. Inaccuracies are common, serious, widespread, and long-standing. Abstracts should inform only the choice of what to read and never what to do.
- Published
- 2022
- Full Text
- View/download PDF
48. Compartmentalized reference list in an academic publication:helping the reader to gain a more comprehensive understanding of an academic paper
- Author
-
Sarja, J. (Jari)
- Published
- 2017
49. Unlocking Index Animalium: From paper slips to bytes and bits.
- Author
-
Pilsk, Suzanne C., Kalfatovic, Martin R., and Richard, Joel M.
- Subjects
- *
METADATA , *METADATABASES , *LINKED data (Semantic Web) , *OPEN data movement , *DIGITIZATION - Abstract
In 1996 Smithsonian Libraries (SIL) embarked on the digitization of its collections. By 1999, a full-scale digitization center was in place and rare volumes from the natural history collections, often of high illustrative value, were the focus for the first years of the program. The resulting beautiful books made available for online display were successful to a certain extent, but it soon became clear that the data locked within the texts needed to be converted to more usable and re-purposable form via digitization methods that went beyond simple page imaging and included text conversion elements. Library staff met with researchers from the taxonomic community to understand their path to the literature and identified tools (indexes and bibliographies) used to connect to the library holdings. The traditional library metadata describing the titles, which made them easily retrievable from the shelves of libraries, was not meeting the needs of the researcher looking for more detailed and granular data within the texts. The result was to identify proper print tools that could potential assist researchers in digital form. This paper outlines the project undertaken to convert Charles Davies Sherborn's Index Animalium into a tool to connect researchers to the library holdings: from a print index to a database to eventually a dataset. Sherborn's microcitation of a species name and his bibliographies help bridge the gap between taxonomist and literature holdings of libraries. In 2004, SIL received funding from the Smithsonian's Atherton Seidell Endowment to create an online version of Sherborn's Index Animalium. The initial project was to digitize the page images and re-key the data into a simple data structure. As the project evolved, a more complex database was developed which enabled quality field searching to retrieve species names and to search the bibliography. Problems with inconsistent abbreviations and styling of his bibliographies made the parsing of the data difficult. Coinciding with the development of the Biodiversity Heritage Library (BHL) in 2005, it became obvious there was a need to integrate the database converted Index Animalium, BHL's scanned taxonomic literature, and taxonomic intelligence (the algorithmic identification of binomial, Latinate name-strings). The challenges of working with legacy taxonomic citation, computer matching algorithms, and making connections have brought us to today's goal of making Sherborn available and linked to other datasets. Partnering with others to allow machine-to-machine communications the data is being examined for possible transformation into RDF markup and meeting the standards of Linked Open Data. SIL staff have partnered with Thomson Reuters and the Global Names Initiative to further enhance the Index Animalium data set. Thomson Reuters' staff is now working on integrating the species microcitation and species name in the ION: Index to Organism Names project; Richard Pyle (The Bishop Museum) is also working on further parsing of the text. The Index Animalium collaborative project's ultimate goal is to successful have researchers go seamlessly from the species name in either ION or the scanned pages of Index Animalium to the digitized original description in BHL - connecting taxonomic researchers to original authored species descriptions with just a click. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
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50. Contribution to the 'Atlas of the Russian Flora': Twelve local floras of European Russia
- Author
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Alexey P. Seregin
- Subjects
flora ,Russia ,tracheophytes ,dataset ,data paper ,Biology (General) ,QH301-705.5 - Abstract
The purpose of this dataset is to deliver to a wider audience in the form of GBIF-mediated data vast floristic materials collected by the author across various localities of European Russia from 2001-2019 (Arkhangelsk, Tver, Vladimir, Tula, Lipetsk, Voronezh Oblasts, Krasnodar Krai, City of Moscow and Komi Republic). Taxonomic data on vascular plants for ten locations were mobilised from the papers and technical reports published in Russian and standardised. Floristic treatments for two locations (Yasnaya Polyana and Tsaritsyno) have never been published before.The newly-prepared dataset includes 5,309 species records, i.e. one species record per each local flora. These are either native or alien (fully naturalised and casual) species. All records within one local flora have the same centroid coordinates and coordinate uncertainty in metres. Floristic inventories from the following locations were mobilised: 01. Ustya, Arkhangelsk Oblast (543 species, 1,500 km2); 02. Zaseki, Tula Oblast (593 species, 60 km2); 03. Polibino, Lipetsk Oblast (553 species, 70 km2); 04. Khrenovoye, Voronezh Oblast (665 species, 200 km2); 05. Troyeruchitsa, Tver Oblast (501 species, 10 km2); 06. Man-Pupu-Ner, Komi Republic (182 species, ca. 300 km2); 07. Middle Lyaga, Komi Republic (143 species, ca. 300 km2); 08. Utrish, Krasnodar Krai (933 species, 195 km2); 09. Yasnaya Polyana, Tula Oblast (236 species, 2.2 km2); 10. Bogolyubovsky Lug, Vladimir Oblast (289 species, 1.7 km2); 11. Tsaritsyno, City of Moscow (359 species, 5.3 km2); 12. Patakino, Vladimir Oblast (312 species, 1.1 km2). According to the GBIF taxonomic backbone, the dataset covers 1,806 species, 669 genera and 127 families of tracheophytes.
- Published
- 2021
- Full Text
- View/download PDF
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