5 results on '"AAI-1101-2021"'
Search Results
2. Real-time PCR culture and serology for the diagnosis of mycoplasma gallisepticum in chicken breeder flocks
- Author
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Seran Temelli, Kamil Tayfun Carli, Serpil Kahya, Ayşegül Eyigör, Uludağ Üniversitesi/Veterinerlik Fakültesi/Klinik Öncesi Bilimler Bölümü., Uludağ Üniversitesi/Veterinerlik Fakültesi/Gıda Hijyeni ve Teknolojileri Bölümü., Kahya, Serpil, Temelli, Seran, Eyigör, Ayşegül, Çarlı, Kamil Tayfun, AAI-1092-2021, AAH-2842-2021, AAI-1101-2021, and E-3867-2010
- Subjects
Mycoplasma gallisepticum ,Veterinary sciences ,Male ,Serologic tests ,Assay ,Bacterial strain ,Mycoplasma gallisepticum infection ,Mycoplasmataceae ,Gallus gallus ,Breeding ,Real time polymerase chain reaction ,Microbiology ,Article ,law.invention ,Serology ,Strain ,Mycoplasma infections ,Poultry diseases ,law ,Animals ,Polymerase chain reaction ,Mycoplasma Synoviae ,Carpodacus Mexicanus ,Poultry Industry ,Colony-forming unit ,General Veterinary ,biology ,Polymerase-chain-reaction ,Avian mycoplasmas ,General Medicine ,Synoviae ,biology.organism_classification ,Bacterium culture ,Herd ,Nonhuman ,Virology ,Chicken ,Real-time polymerase chain reaction ,Sensitivity and specificity ,Bacterium detection ,Mollicutes ,Female ,Flock ,Chickens ,Controlled study ,Real-time PCR - Abstract
This study aimed to compare a real-time PCR (rPCR) test with improved detection limit to serology and culture for the detection of Mycoplasma gallisepticum (MG) infection in chicken breeder flocks. Six hundred and forty-six blood and tracheal swab samples belonging to 31 grandparent chicken breeder flocks were tested by rPCR. The detection limit of rPCR was 0.9 pg mu l(-1), with pure MG S6 strain DNA and 100 colony forming units (CFUs) ml(-1), where both pure culture and tracheal swabs were artificially spiked with the same strain. The seropositive flock rate based on both MG RPA and HI were calculated as 48.4% (15/ 31) and 32.3% (10/31), respectively, while culture- and rPCR-positive flock rates were 16.1% (5/31) and 29.0% (9/31), respectively. On flock-based analysis, culture method detected 5 out of 10 MG seropositive flocks (sensitivity 50%, specificity 100%), whereas rPCR detected 8 out of 10 flocks (sensitivity 80%, specificity 95%). Agreements between serology and culture, and serology and rPCR were 83.9% and 90.3%, respectively. On individual sample-based analysis, culture method detected 26 out of 78 MG seropositive chicken (sensitivity 33%, specificity 100%), whereas rPCR detected 51 out of 78 MG seropositive chickens (sensitivity 65%, specificity 96%). There was 91.9% and 91.4% agreement between serology and culture, and serology and rPCR, respectively. Results of this study indicate that the rPCR with improved in vitro detection limit could detect MG in seropositive chicken flocks. Therefore, we advise the use of rPCR and/or culture for confirmation of serology results obtained from screening MG infection in chicken flocks.
- Published
- 2010
3. Salmonella profile in chickens determined by real-time polymerase chain reaction and bacteriology from years 2000 to 2003 in Turkey
- Author
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K.T. Carli, Gülşen Goncagül, Eyigor A, E. Gunaydin, Uludağ Üniversitesi/Veteriner Fakültesi/Gıda Hijyeni ve Teknolojisi Bölümü., Uludağ Üniversitesi/Yenişehir İbrahim Orhan Meslek Yüksek Okulu., Eyigör, Ayşegül, Goncagül, Gülşen, Günaydın, Elçin, Carlı, K. Tayfun, E-3867-2010, AAI-1101-2021, and AAK-6555-2021
- Subjects
Serotype ,Litter (animal) ,Veterinary sciences ,Salmonella ,Veterinary medicine ,Identification ,Turkey ,Environmental-samples ,medicine.disease_cause ,Poultry ,Turkey (republic) ,law.invention ,Feces ,Food Animals ,law ,Carrier state ,Polymerase chain reaction ,biology ,Salmonella enterica ,Classification ,Chicken ,Real-time polymerase chain reaction ,PCR ,Microbiological examination ,Aves ,Heterozygote ,Serovars ,Gallus gallus ,Marmara ,Typhimurium ,Microbiology ,Serogrup-D ,Salmonella enterica subsp. enterica serovar enteritidis ,Bacteriology ,medicine ,Animals ,Meleagris gallopavo ,General Immunology and Microbiology ,Animal ,Animal disease ,biology.organism_classification ,Tetrathionate broth enrichment ,Bacteriological techniques ,Food Pathogens ,Salmonella Enterica Serovar Enteritidis ,Salmonella enteritidis ,Isolation and purification ,Enteritidis ,Animal Science and Zoology ,Flock ,Comparative study ,Enterica serotype enteritidis ,Chickens - Abstract
From years 2000 to 2003, Salmonella was investigated from a total of 1785 samples comprised of chicken intestinal samples, cloacal swabs, drag swabs, litter samples and chick dust samples collected from 191 poultry breeding flocks belonging to 15 different chicken breeding stock companies in the Marmara region, Turkey by a SYBR green-based real-time polymerase chain reaction (SGBRT-PCR), by a probe-specific real-time polymerase chain reaction (PSRT-PCR) and by standardized bacteriology as described in the manual of National Poultry Improvement Plan and Auxillary Provisions, United States Department of Agriculture. Between January 2000 and July 2001, Salmonella was detected at the rates of 5.87% and 4.10% out of a total of 1242 samples by SGBRT-PCR and bacteriology, respectively. From July 2001 until December 2003, Salmonella was found at rates of 11.42% and 5.52% from a total of 543 samples by PSRT-PCR and bacteriology, respectively. The dominant Salmonella serovar was determined as Salmonella enterica subsp. enterica Serovar Enteritidis ( S. Enteritidis), while serogroup C1 and C2 in 2001 and serogroup E1 in 2002 were isolated as additional serovars. As a conclusion, S. Enteritidis seems to be the major problem in poultry breeding flocks in Turkey, and both of the real-time polymerase chain reaction methods were found more sensitive than standard bacteriology for the detection of Salmonella from poultry samples.
- Published
- 2005
4. Detection of salmonellae in chicken feces by a combination of tetrathionate broth enrichment, capillary PCR, and capillary gel electrophoresis
- Author
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Ayşegül Eyigör, K. Tayfun Çarli, Can Bora Unal, Vildan Caner, Uludağ Üniversitesi/Veteriner Fakültesi/Besin Hijyeni ve Teknolojisi Bölümü., Çarlı, Kamil Tayfun, Eyigör, Ayşegül, Caner, Vildan, E-3867-2010, AAI-1101-2021, ABI-5029-2020, and Uludağ Üniversitesi/Veteriner Fakültesi/Mikrobiyoloji Bölümü.
- Subjects
DNA, Bacterial ,Microbiology (medical) ,Salmonella ,Meat ,Environmental-samples ,Assay ,Cycle dna amplification ,medicine.disease_cause ,Typhimurium ,Polymerase Chain Reaction ,Sensitivity and Specificity ,Microbiology ,Clinical Veterinary Microbiology ,law.invention ,Feces ,chemistry.chemical_compound ,Serogroup-D ,Capillary electrophoresis ,law ,medicine ,Animals ,Tetrathionic Acid ,Poultry Diseases ,Polymerase chain reaction ,Detection limit ,Tetrathionate ,Salmonella Infections, Animal ,biology ,Polymerase-chain-reaction ,Electrophoresis, Capillary ,biology.organism_classification ,Enterobacteriaceae ,Culture Media ,chemistry ,Salmonella enterica ,Enteritidis ,Immunomagnetic separation ,Products ,Chickens ,Bacteria - Abstract
This report describes a rapid detection procedure for salmonellae from chicken feces by the combination of tetrathionate primary enrichment (preenrichment [PE])-bacterial lysis-capillary PCR and capillary gel electrophoresis. Pure Salmonella enterica serovar Enteritidis 64K was reisolated and detected by capillary PCR after buffered peptone water and nutrient broth, tetrathionate broth base Hajna (TTBH), and tetrathionate broth (TTB) preenrichments. When the same culture was mixed with intestinal homogenate, bacteriological reisolation and capillary PCR detection was achieved only by TTBH and TTB preenrichments. Capillary gel electrophoresis revealed that a Salmonella genus-specific 281-bp PCR product was detected when Salmonella strains but not non- Salmonella strains were tested. The detection limit of capillary PCR with whole-cell DNA extracted from pure Salmonella enterica serovars Enteritidis 64K, Typhimurium LT2-CIP60-62, and Gallinarum 64K was 3, 3, and 9 CFU ml −1 , respectively. The detection limit of capillary PCR from whole-cell DNA extracted from intestinal homogenate artificially contaminated with the same three strains was 3, 3, and 7 CFU ml −1 , respectively. We compared the results of the capillary PCR and bacteriological examination from the natural samples. Thirty-five of 53 naturally contaminated samples produced a specific PCR product. In 9 of the 35 PCR-positive samples, Salmonella could not be detected bacteriologically either by PE or a primary and delayed secondary enrichment (DSE) combination. In the 18 PCR-negative samples, 4 samples were found to harbor Salmonella by both PE and DSE and 14 samples were positive after DSE. Fifty-three additional intestinal homogenate samples, which were negative by their PE and DSE in bacteriological examination, were found to be also negative by their PCRs. The total time required to detect Salmonella with the capillary PCR method we used was approximately 20 h. If samples are from clinically diseased birds, the total time for PCR and detection is reduced to 2 h since the 18-h PE is not required. These results indicate that TTB enrichment, bacterial lysis, and genus-specific capillary PCR combined with capillary gel electrophoresis constitute a sensitive and selective procedure which has the potential to rapidly identify Salmonella -infected flocks.
- Published
- 2001
5. Kanatlı Salmonella izotlarının air thermal cycler amplifikasyonu ve kapiller jel elektroforezi ile hızlı identifikasyonu
- Author
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Uludağ Üniversitesi/Veteriner Fakültesi/Besin Hijyeni ve Teknolojisi Bölümü., Uludağ Üniversitesi/Veteriner Fakültesi/Mikrobiyoloji Bölümü., Çarlı, Kamil Tayfun, Caner, Vildan, Eyigör, Ayşegül, AAI-1101-2021, and ABI-5029-2020
- Subjects
Veterinary sciences ,Salmonella ,Food Pathogens ,Salmonella Enterica Serovar Enteritidis ,Polymerase-chain-reaction ,Poultry ,Polymerase chain reaction ,Enteritidis infections - Abstract
The possible use of a genus-specific polymerase chain reaction (PCR) for the identification of Salmonella colonies was tested on 14 reference strains and 38 clinical Salmonella strains isolated from chickens by the standard method of the National Poultry Improvement Plan and Auxiliary Provisions (NPIP), USDA, U.S.A. All the PCRs using primer pairs InvA1 and InvA2 (5) gave 281 bp amplification product specific for the Salmonella genus and produced results identical (100%) to those obtained with biochemical and serological methods. Thus, the genus-specific capillary PCR for the identification of a colony of Salmonellae from a selective agar plate was performed within approximately 2 h and the total time required for definitive diagnosis of infection was 2 days using primary enrichment (PE) and 7 days using delayed secondary enrichment (DSE).
- Published
- 2001
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