48 results on '"Almeida, Eduardo A. B."'
Search Results
2. Small but critical: semi-natural habitat fragments promote bee abundance in cotton agroecosystems across both Brazil and the United States
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Cusser, Sarah, Grando, Carolina, Zucchi, Maria Imaculada, López-Uribe, Margarita M., Pope, Nathaniel S., Ballare, Kimberly, Luna-Lucena, Danielle, Almeida, Eduardo A. B., Neff, John L., Young, Kenneth, and Jha, Shalene
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- 2019
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3. Pollen diet diversity across bee lineages varies with lifestyle rather than colony size.
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Devkota, Kedar, Santos, Charles F dos, Souza-Santos, Patrick D, Ramos, Jenifer D, Otesbelgue, Alex, Mishra, Binayak Prakash, Almeida, Eduardo A B, and Blochtein, Betina
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HONEYBEES ,POLLEN ,BEES ,DIET ,HONEY ,NUTRITION surveys ,COMPARATIVE method ,FRANKFURTER sausages - Abstract
The shift to a pollen diet and the evolution of more highly organized societies, i.e. eusocial, were key milestones in bee diversification over their evolutionary history, culminating in a high dependence on feeding broods with a large variety of floral resources. Here, we hypothesized that obligatory eusocial bees have a wider diet diversity than their relatives with solitary lifestyles, and this would be related to colony size. To test both hypotheses, we surveyed diet breadth data (palynological analysis) based on the Shannon–Wiener index (Hʹ) for 85 bee taxa. We also obtained colony size for 47 eusocial bee species. These data were examined using phylogenetic comparative methods. The results support the generalist strategy as a derived trait for the bee taxa evaluated here. The dietary diversity of eusocial bees (Hʹ: 2.1, on average) was 67.5% higher than that of noneusocial bees (Hʹ: 1.21, on average). There was, however, no relationship between diet breadth and colony size, indicating that smaller colonies can harvest a pollen variety as diverse as larger colonies. Taken together, these results provide new insights into the impact of lifestyle on the diversity of collected pollen. Furthermore, this work sheds light on an advantage of living in more highly structured societies irrespective of the size of the colony. [ABSTRACT FROM AUTHOR]
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- 2024
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4. Looking beyond the flowers: associations of stingless bees with sap-sucking insects
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dos Santos, Charles Fernando, Halinski, Rosana, de Souza dos Santos, Patrick Douglas, Almeida, Eduardo A. B., and Blochtein, Betina
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- 2019
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5. UCE phylogenomics, biogeography, and classification of long-horned bees (Hymenoptera: Apidae: Eucerini), with insights on using specimens with extremely degraded DNA
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Freitas, Felipe V., Branstetter, Michael, Franceschini-Santos, Vinícius, Dorchin, Achik, Wright, Karen, Lopez-Uribe, Margarita, Griswold, Terry, Silveira, Fernando, and Almeida, Eduardo A. B.
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UCE curation ,ddBD ,MCMCtree ,Apoidea ,museomics ,CURE - Abstract
Long-horned bees (Apidae, Eucerini) are found in different biomes worldwide and include some important crop pollinators. In the New World, Eucerini has received extensive taxonomic study during the twentieth century, resulting in several revisions of its genera. In contrast, progress on eucerine phylogenetic research and genus-level classification has been slow, primarily due to the relatively homogeneous external morphology within the tribe and the rarity of many of its species in collections. Notable exceptions have been analyses based on molecular data of a few loci, which have shed light on the initial diversification of Eucerini and clarified relationships among some lineages of eucerine bees. Here, we present a comprehensive phylogenetic study of Eucerini based on ultraconserved elements including 153 species from nearly all genera and subgenera and from all biogeographic regions where they occur. We recovered seven main lineages and found most of the genera and subgenera to be reciprocally monophyletic. Using the updated phylogenetic framework, we: (1) propose taxonomic changes, including a new subtribal classification, and reorganized generic and subgeneric limits; (2) estimate divergence times; and (3) conduct a detailed exploration of historical biogeography of long-horned bees. We find that eucerine lineages expanded their range onto most continents only after its initial diversification in southern South America during the Eocene. Finally, we discuss the challenges of working with specimens with highly degraded DNA, present insights into how to improve phylogenetic results for both species-tree and concatenation approaches and introduce a new pipeline for UCE curation (Curation of UltraconseRved Elements).
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- 2022
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6. Flowering Time Variation in Two Sympatric Tree Species Contributes to Avoid Competition for Pollinator Services.
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Alves-de-Lima, Larissa, Calixto, Eduardo Soares, Oliveira, Marcos Lima de, Novaes, Letícia Rodrigues, Almeida, Eduardo A. B., and Torezan-Silingardi, Helena Maura
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POLLINATORS ,POLLINATION ,FLOWERING time ,NATURAL history ,SAVANNAS ,SPECIES ,PLANT species ,ORCHIDS - Abstract
Competition is an important biological filter that can define crucial features of species' natural history, like survival and reproduction success. We evaluated in the Brazilian tropical savanna whether two sympatric and congenereric species, Qualea multiflora Mart. and Q. parviflora Mart. (Vochysiaceae), compete for pollinator services, testing whether there is a better competitor or whether plants present any anti-competitive mechanism. Additionally, we investigated the breeding system, pollinators, and flowering phenology of both species. The results showed that Q. multiflora and Q. parviflora are dependent on pollinators for fruit formation, as they exhibited a self-incompatible and non-agamospermic breeding system. These plants shared the same guild of pollinators, which was formed by bees and hummingbirds, and an overlap in the flower visitation time was observed. Each plant species had different pollinator attraction strategies: Q. multiflora invested in floral resource quality, while Q. parviflora invested in resource quantity. The blooming time showed a temporal flowering partition, with highly sequential flowering and no overlap. Qualea parviflora bloomed intensely from September to October, while Q. multiflora bloomed from November to January, with the flowering peak occurring in December. The two Qualea species have morphologically similar flowers, are sympatric, and share the same pollinator community, with overlapping foraging activity during the day. However, they do not compete for pollinator services as they exhibit an anti-competitive mechanism mediated by temporal flowering partition. [ABSTRACT FROM AUTHOR]
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- 2023
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7. UCE phylogenomics, biogeography, and classification of long-horned bees (Hymenoptera: Apidae: Eucerini), with insights on using specimens with extremely degraded DNA.
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Freitas, Felipe V, Branstetter, Michael G, Franceschini-Santos, Vinícius H, Dorchin, Achik, Wright, Karen W, López-Uribe, Margarita M, Griswold, Terry, Silveira, Fernando A, and Almeida, Eduardo A B
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APIDAE ,BIOGEOGRAPHY ,BEES ,HYMENOPTERA ,NEONICOTINOIDS ,BEE venom ,DNA - Abstract
Long-horned bees (Apidae, Eucerini) are found in different biomes worldwide and include some important crop pollinators. In the Western Hemisphere, Eucerini received extensive taxonomic study during the twentieth century, resulting in several revisions of its genera. In contrast, progress on eucerine phylogenetic research and the genus-level classification has been slow, primarily due to the relatively homogeneous external morphology within the tribe and the rarity of many of its species in collections. Here, we present a comprehensive phylogenetic study of Eucerini based on ultraconserved elements, including 153 species from nearly all genera and subgenera and from all biogeographic regions where they occur. Many of these specimens are from museums and were collected as far back as 1909. We discuss the challenges of working with specimens with highly degraded DNA, present insights into improving phylogenetic results for both species-tree and concatenation approaches, and present a new pipeline for UCE curation (Curation of UltraconseRved Elements—CURE). Our results show the existence of seven main lineages in Eucerini and most of the genera and subgenera to be reciprocally monophyletic. Using a comprehensive and up-to-date phylogenetic framework, we: (1) propose taxonomic changes, including a new subtribal classification and reorganized generic and subgeneric limits; (2) estimate divergence times; and (3) conduct a detailed exploration of historical biogeography of long-horned bees. We find that eucerine lineages expanded their range onto most continents only after their initial diversification in southern South America during the Eocene. [ABSTRACT FROM AUTHOR]
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- 2023
- Full Text
- View/download PDF
8. Behavioural evolution of Neotropical social wasps (Vespidae: Polistinae): the queen selection process.
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Chavarría‐Pizarro, Laura, da Silva, Marjorie, Ament, Danilo C., Almeida, Eduardo A. B., and Noll, Fernando Barbosa
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VESPIDAE ,WASPS ,SOCIAL evolution ,INSECT societies ,QUEEN honeybees ,VIDEO production & direction ,PRODUCTION control ,ANT colonies ,BEE colonies - Abstract
All Epiponini wasps are polygynic, with multiple queens alternating over the colony cycle. There are several potential queens in the early stages of this cycle, but as it progresses, the number of queens is reduced. Because most individuals remain reproductively totipotent, there is great potential for conflicts over reproduction. Workers could have an advantage in controlling queen production because they are much more numerous than queens. Nevertheless, the queen selection process is little known for Epiponini. For this reason, we aimed to study the behaviour of queens and workers during queen selection in multiple species of Epiponini, integrate information from previous behavioural studies, and perform a comparative analysis to interpret changes evolutionarily. We conducted observations on nine species belonging to five genera: Brachygastra, Chartergellus, Metapolybia, Polybia and Protopolybia. Females were individually marked to make direct and video observations. Queen production was artificially induced. A total of 28 behaviours related to queen selection were identified. The most aggressive interactions between castes, such as bite and dart, were lost in the major lineages of Epiponini. Bending display I is an ancient behaviour used as the main dominance display. Behaviours exhibited by workers to test queen status arose in the common ancestor of the Epiponini and are not shared by other polistine wasps. Consequently, the act of workers testing queen status probably was present in the Epiponini ancestor. Ritualized test display and dominance behaviours are used in Epiponini as honest signals of the queen's reproductive potential instead of aggressive behaviours. Caste flexibility had already been suggested as the ground plan for Epiponini and is herein discussed as decisive for colony survival of swarm wasps, because it allows colonies to respond efficiently to different situations that may eventually arise. [ABSTRACT FROM AUTHOR]
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- 2023
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9. Biogeography and diversification of colletid bees (Hymenoptera: Colletidae): emerging patterns from the southern end of the world
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Almeida, Eduardo A. B., Pie, Marcio R., Brady, Seán G., and Danforth, Bryan N.
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- 2012
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10. Colletidae nesting biology (Hymenoptera: Apoidea)
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Almeida, Eduardo A. B.
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- 2008
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11. Phylogeny of the Xeromelissinae (Hymenoptera: Colletidae) Based upon Morphology and Molecules
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Almeida, Eduardo A. B., Packer, Laurence, and Danforth, Bryan N.
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- 2008
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12. speciesLink: rich data and novel tools for digital assessments of biodiversity.
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Lange Canhos, Dora Ann, Almeida, Eduardo A. B., Assad, Ana Lucia, da Cunha Bustamante, Mercedes Maria, Perez Canhos, Vanderlei, Chapman, Arthur David, De Giovanni, Renato, Imperatriz-Fonseca, Vera Lúcia, Garcez Lohmann, Lúcia, Costa Maia, Leonor, Miller, Joseph T., Nelson, Gil, Peterson, A. Townsend, Pirani, José Rubens, de Souza, Sidnei, Stehmann, João Renato, and Thiers, Barbara
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INFORMATION networks , *DIGITAL technology , *DIGITAL images , *SUSTAINABLE development , *COMMUNITY involvement , *SCIENTIFIC community , *INFORMATION resources , *BIODIVERSITY - Abstract
speciesLink is a large-scale biodiversity information portal that exists thanks to a broad collaborative network of people and institutions. CRIA's involvement with the scientific community of Brazil and other countries is responsible for the significant results achieved, currently reaching more than 15 million primary biodiversity data records, 95% of which are associated with preserved specimens and about 25% with high-quality digital images. The network provides data on over 200,000 species, of which over 110,000 occur in Brazil. This article describes thematic networks within speciesLink, as well as some of the most useful tools developed. The importance and contributions of speciesLink are outlined, as are concerns about securing stable budgetary support for such biodiversity data e-infrastructures. Here we review the value of speciesLink as a major source of biodiversity information for research, education, informed decision-making, policy development, and bioeconomy. [ABSTRACT FROM AUTHOR]
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- 2022
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13. Phylogenomic dating and Bayesian biogeography illuminate an antitropical pattern for eucerine bees.
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Freitas, Felipe V., Branstetter, Michael G., Casali, Daniel M., Aguiar, Antonio J. C., Griswold, Terry, and Almeida, Eduardo A. B.
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BEES ,GLOBAL cooling ,TIME perception ,BIOGEOGRAPHY ,APIDAE ,PHYLOGEOGRAPHY ,HYMENOPTERA ,EOCENE Epoch - Abstract
Aim: An antitropical pattern is characterized by the occurrence of closely related taxa south and north of the tropics but absent or uncommonly represented closer to the equator, in contrast to most taxa, which tend to have their highest diversity in the tropical regions. We investigate the antitropical distribution of eucerine bees with the aim of contributing to the characterization and understanding of this pattern. Location: All continents except Antarctica and Australia. Taxon: Eucerine bees (Hymenoptera: Apidae: Eucerinae). Methods: We carried out phylogenomic dating under two different clock models and used multiple strategies to vary matrix composition, evaluating the overlapping of divergence times estimated across models using Bhattacharyya coefficients. Lastly, we reconstructed the biogeographic history of eucerine bees using a Bayesian implementation of the DEC model. Results: Eucerinae is estimated to have started diversifying during the Palaeocene, with all its tribes originating during the Palaeocene/Eocene transition in southern South America. At least two range expansions happened into North America before the full closure of the Isthmus of Panama. We show that divergence between closely related groups with disjunct distributions would have happened in periods when the climate favoured the expansion of open habitats and became isolated when the forests were re‐established. Main conclusions: We describe the early diversification of eucerine bees, revealing an intimate association with southern South America. Events of range evolution of Eucerinae were likely affected by periods of global cooling and aridification, and palaeoclimatic and vegetational conditions probably have been more relevant to the formation of the antitropical distribution of Eucerinae than the consolidation of the Isthmus of Panama connecting the Americas. We also demonstrate that most uncertainty in divergence time estimation is not due to the amount of molecular data being used, but more likely other factors like fossil calibrations and violations of clock models. [ABSTRACT FROM AUTHOR]
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- 2022
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14. Phylogeny, biogeography and diversification of the mining bee family Andrenidae.
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Bossert, Silas, Wood, Thomas J., Patiny, Sébastien, Michez, Denis, Almeida, Eduardo A. B., Minckley, Robert L., Packer, Laurence, Neff, John L., Copeland, Robert S., Straka, Jakub, Pauly, Alain, Griswold, Terry, Brady, Seán G., Danforth, Bryan N., and Murray, Elizabeth A.
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BEES ,APIDAE ,PHYLOGEOGRAPHY ,BIOGEOGRAPHY ,POLLINATORS ,PHYLOGENY ,PARSIMONIOUS models - Abstract
The mining bees (Andrenidae) are a major bee family of over 3000 described species with a nearly global distribution. They are a particularly significant component of northern temperate ecosystems and are critical pollinators in natural and agricultural settings. Despite their ecological and evolutionary significance, our knowledge of the evolutionary history of Andrenidae is sparse and insufficient to characterize their spatiotemporal origin and phylogenetic relationships. This limits our ability to understand the diversification dynamics that led to the second most species‐rich genus of all bees, Andrena Fabricius, and the most species‐rich North American genus, Perdita Smith. Here, we develop a comprehensive genomic dataset of 195 species of Andrenidae, including all major lineages, to illuminate the evolutionary history of the family. Using fossil‐informed divergence time estimates, we characterize macroevolutionary dynamics, incorporate paleoclimatic information, and present our findings in the context of diversification rate estimates for all other bee tribes. We found that diversification rates of Andrenidae steeply increased over the past 15 million years, particularly in the genera Andrena and Perdita. This suggests that these two groups and the brood parasites of the genus Nomada Scopoli (Apidae), which are the primary cleptoparasitic counterparts of Andrena, are similar in age and represent the fastest diversifying lineages of all bees. Using our newly developed time frame of andrenid evolution, we estimate a late Cretaceous origin in South America for the family and reconstruct the past dispersal events that led to its present‐day distribution. [ABSTRACT FROM AUTHOR]
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- 2022
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15. Morphology and Bayesian tip-dating recover deep Cretaceous-age divergences among major chrysidid lineages (Hymenoptera: Chrysididae).
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Lucena, Daercio A A and Almeida, Eduardo A B
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HYMENOPTERA , *TIME perception , *NEOGENE Period , *MORPHOLOGY , *WASPS ,GONDWANA (Continent) - Abstract
We integrated phylogenetic, biogeographic and palaeontological data to reconstruct the evolutionary history of the cuckoo wasps. We propose a phylogenetic hypothesis based on a comprehensive morphological study resulting in 300 characters coded for both living and extinct species. Phylogenetic relationships and divergence time estimation were simultaneously inferred in a Bayesian tip-dating framework, applying a relaxed morphological clock. Results unequivocally indicate Chrysididae to be monophyletic, as well as all traditionally recognized subfamilies and tribes. Within the Chrysidinae, Elampini was placed as the sister-group of the other three chrysidine tribes, with Parnopini as sister to the clade including Allocoeliini and Chrysidini. Dating analysis indicates that the major lineages started to differentiate around 130 Mya during the Early Cretaceous. The clades recognized as subfamilies started differentiating during the Palaeogene and the Neogene. Our results reveal an intricate process on the geographic evolution of chrysidid wasps and dispute previous ideas that Cretaceous-old splits in their early history could be associated with vicariant events related to the breakup between Africa and South America. The present-day southern disjunctions of some groups are interpreted as the outcome of more recent dispersals and extinctions of representatives from Nearctic and Palaearctic faunas during the Neogene, when northern continents became significantly colder. [ABSTRACT FROM AUTHOR]
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- 2022
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16. The relevance of chromosome fissions for major ribosomal DNA dispersion in hymenopteran insects.
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Menezes, Rodolpho S. T., Cabral‐de‐Mello, Diogo C., Milani, Diogo, Bardella, Vanessa B., and Almeida, Eduardo A. B.
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RIBOSOMAL proteins ,CHROMOSOMES ,RIBOSOMAL DNA ,ORGANELLE formation ,INSECTS ,INSECT evolution ,RECOMBINANT DNA - Abstract
Ribosomal DNA (rDNA) loci are essential for cellular metabolism due to their participation in ribosome biogenesis. Although these genes have been widely cytogenetically mapped, the evolutionary mechanisms behind their variability in number and chromosomal location remain elusive, even in well‐known biological groups, such as ants, bees and wasps (Insecta: Hymenoptera). To address this question in Hymenoptera and therefore advance the understanding of rDNA evolution in insects in general, we integrated molecular cytogenetic data, a phylogenomic framework, model‐based predictions and genome sequencing. Hence, we assessed the main evolutionary trends shaping the chromosomal distribution of rDNA loci in Hymenoptera. We noticed the conservation of one site of rDNA per haploid genome, suggesting that a single 45S rDNA locus is the putative ancestral pattern for aculeate Hymenoptera. Moreover, our results highlighted a nonrandom distribution of rDNA in Hymenoptera karyotypes, as well as a lineage‐specific preferential location. The proximal location of rDNA is favoured in species with multiple loci and in the two families of Hymenoptera that show the highest range of chromosome numbers: Formicidae and Vespidae. We propose that chromosome fissions have played a crucial role in the distribution pattern of rDNA loci through the evolutionary diversification of Hymenoptera. Moreover, our genomic analysis of two species, one with a single locus of rDNA and one with multiple loci, supported that loci multiplication is followed by sequence divergence. Our results provide detailed information about the number and chromosomal position of rDNA in Hymenoptera and, therefore, broaden our knowledge regarding rDNA evolutionary dynamics in insects. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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17. Marimbondos: systematics, biogeography, and evolution of social behaviour of neotropical swarm‐founding wasps (Hymenoptera: Vespidae: Epiponini).
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Noll, Fernando B., da Silva, Marjorie, Soleman, Raduan A., Lopes, Rogério B., Grandinete, Yuri C., Almeida, Eduardo A. B., Wenzel, John W., and Carpenter, James M.
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VESPIDAE ,SOCIAL evolution ,WASPS ,HYMENOPTERA ,BIOGEOGRAPHY ,OLIGOCENE Epoch ,ICHNEUMONIDAE ,EOCENE Epoch - Abstract
Neotropical swarm‐founding wasps are divided into 19 genera in the tribe Epiponini (Vespidae, Polistinae). They display extensive variation in several colony‐level traits that make them an attractive model system for reconstructing the evolution of social phenotypes, including caste dimorphism and nest architecture. Epiponini has been upheld as a solid monophyletic group in most phylogenetic analyses carried out so far, supported by molecular, morphological and behavioural data. Recent molecular studies, however, propose different relationships among the genera of swarm‐founding wasps. This study is based on the most comprehensive epiponine sampling so far and was analyzed by combining morphological, nesting and molecular data. The resulting phylogenetic hypothesis shows many of the traditional clades but still impacts the way certain behavioural characters, such as nest structure and castes, evolved, and thus requires some re‐interpretations. Angiopolybia as sister to the remaining Epiponini implies that nest envelopes and a casteless system are plesiomorphic in the tribe. Molecular dating points to an early tribal diversification during the Eocene (c. 55–38 Ma), with the major differentiation of current genera concentrated in the Oligocene/Miocene boundary. [ABSTRACT FROM AUTHOR]
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- 2021
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18. Intratribal Variation among Mature Larvae of Stingless Bees (Apidae: Meliponini) with Descriptions of the Eggs of 11 Species.
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ROZEN JR., JEROME G., ALMEIDA, EDUARDO A. B., SMITH, COREY SHEPARD, and JONES, LANCE ERIC
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STINGLESS bees , *APIDAE , *SPECIES , *EGGS , *ANATOMICAL variation , *LARVAE , *BEES - Abstract
The abundant members of the Meliponini (stingless bees) are restricted to the tropics and subtropics worldwide. Because past studies of the anatomy of their mature larvae are limited, revealing little anatomical variation in the tribe, the current investigation attempts to examine this topic more thoroughly. Herein we describe the mature larvae of 30 species representing 16 genera of a total world fauna of perhaps 32 genera. Although the larvae of most taxa show little anatomical diversity, two species, Trigona (Duckeola) ghilianii Spinola and Trigona (Frieseomelitta) varia (Lepeletier), have mature larvae that differ remarkably in anatomical structure from those of other known stingless bees, and, further, their individual anatomies suggest a close evolutionary relationship. Larval evidence is presented indicating that Trichotrigona extranea (Camargo and Moure) is also related to these two taxa. Because eggs are often included in collections of bee larvae, this study adds descriptions of the eggs of 11 species of the Meliponini not previously characterized as well as a list of those that had been treated earlier. [ABSTRACT FROM AUTHOR]
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- 2021
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19. Corbiculate Bees (Hymenoptera: Apidae): Exploring the Limits of Morphological Data to Solve a Hard Phylogenetic Problem.
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Porto, Diego Sasso and Almeida, Eduardo A B
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BEES ,HYMENOPTERA ,APIDAE - Abstract
Corbiculate bees comprise a distinctive radiation of animals including many familiar species, such as honey bees and bumble bees. The group exhibits a broad variety of morphologies and behaviors, including solitary, social, and cleptoparasitic lifestyles. Since corbiculate bees play a critical role for the interpretation of eusocial behaviors, understanding their phylogeny is crucial to explain patterns and mechanisms of social evolution. Despite advances to unveil corbiculate relationships employing genomic data, the drivers of conflict between molecular and morphological hypotheses are still not fully understood. Morphological datasets favor a single origin for highly eusocial behaviors (i.e. Apini + Meliponini) whereas molecular datasets favor other scenarios (e.g. Bombini + Meliponini). Explanations for this incongruence have been suggested, including quality, quantity, and source of data or methodological issues. In this work we tackled this problem by generating the most extensive morphological dataset for the corbiculate bee species by exploring characters from all body regions, including external and internal adult skeletal anatomy. We produced a matrix with 289 characters for 53 taxa of Apidae, including 24 corbiculate bees. We explored different analyses and optimality criteria including extended implied weights parsimony and two partitioning schemes for Bayesian inferences. We contrasted hypotheses with Bayesian topological tests and conducted analyses to investigate if characters were prone to concerted convergence. Our results are congruent with the conclusions of previous studies based on morphology, recovering Apini sister to Meliponini and both of them together sister to Bombini. Finally, we provide our interpretations on the corbiculate controversy and provide a conciliatory scenario about this issue. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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20. Partitioned Gene-Tree Analyses and Gene-Based Topology Testing Help Resolve Incongruence in a Phylogenomic Study of Host-Specialist Bees (Apidae: Eucerinae).
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Freitas, Felipe V, Branstetter, Michael G, Griswold, Terry, and Almeida, Eduardo A B
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PHYLOGENY ,BIOLOGICAL evolution ,APIDAE ,BEETLES ,GENETICS - Abstract
Incongruence among phylogenetic results has become a common occurrence in analyses of genome-scale data sets. Incongruence originates from uncertainty in underlying evolutionary processes (e.g. incomplete lineage sorting) and from difficulties in determining the best analytical approaches for each situation. To overcome these difficulties, more studies are needed that identify incongruences and demonstrate practical ways to confidently resolve them. Here, we present results of a phylogenomic study based on the analysis 197 taxa and 2,526 ultraconserved element (UCE) loci. We investigate evolutionary relationships of Eucerinae, a diverse subfamily of apid bees (relatives of honey bees and bumble bees) with >1,200 species. We sampled representatives of all tribes within the group and >80% of genera, including two mysterious South American genera, Chilimalopsis and Teratognatha. Initial analysis of the UCE data revealed two conflicting hypotheses for relationships among tribes. To resolve the incongruence, we tested concatenation and species tree approaches and used a variety of additional strategies including locus filtering, partitioned gene-trees searches, and gene-based topological tests. We show that within-locus partitioning improves gene tree and subsequent species-tree estimation, and that this approach, confidently resolves the incongruence observed in our data set. After exploring our proposed analytical strategy on eucerine bees, we validated its efficacy to resolve hard phylogenetic problems by implementing it on a published UCE data set of Adephaga (Insecta: Coleoptera). Our results provide a robust phylogenetic hypothesis for Eucerinae and demonstrate a practical strategy for resolving incongruence in other phylogenomic data sets. [ABSTRACT FROM AUTHOR]
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- 2021
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21. Remarkable sexually dimorphic features of Coniceromyia (Diptera: Phoridae): evolution in the light of phylogeny and comparative evidence about their function.
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Ament, Danilo C, Hash, John M, and Almeida, Eduardo A B
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DIPTERA ,SEXUAL selection ,PHYLOGENY ,SEXUAL dimorphism ,EVIDENCE - Abstract
Coniceromyia is a genus of 100 species of phorid flies mostly distributed in the Neotropical region. The genus is distinguishable based on several male-exclusive features in different parts of the body, many of which are unique among the Phoridae. In addition, many species of Coniceromyia have nearly identical morphology of their male copulatory apparatus (i.e. hypopygium). The co-occurrence of these unusual characteristics suggests an evolutionary correlation between them. To investigate this possible correlation and to understand other aspects of the evolution of these puzzling male-exclusive characters, we performed the first phylogenetic analysis of Coniceromyia , based on morphological and molecular data. Ancestral state reconstructions and comparative analyses then allowed us to infer the evolution of these characters and search for general evolutionary patterns and correlated histories. We demonstrate that these male-exclusive features varied from highly homoplastic to uniquely derived on the phylogenetic history of Coniceromyia. For some characters, we found evidence of a biased evolution favouring gains over losses of the feature, but no male characteristics were significantly correlated with hypopygium morphology. The evolutionary patterns of the male-exclusive features and comparative evidence with other better known groups suggest possible functions for these features related to sexual selection. [ABSTRACT FROM AUTHOR]
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- 2021
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22. Investigating Morphological Complexes Using Informational Dissonance and Bayes Factors: A Case Study in Corbiculate Bees.
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Porto, Diego S, Almeida, Eduardo A B, and Pennell, Matthew W
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GAMMA distributions , *APIDAE , *INFORMATION modeling , *CASE studies , *BUMBLEBEES , *HONEYBEES , *BEES - Abstract
It is widely recognized that different regions of a genome often have different evolutionary histories and that ignoring this variation when estimating phylogenies can be misleading. However, the extent to which this is also true for morphological data is still largely unknown. Discordance among morphological traits might plausibly arise due to either variable convergent selection pressures or else phenomena such as hemiplasy. Here, we investigate patterns of discordance among 282 morphological characters, which we scored for 50 bee species particularly targeting corbiculate bees, a group that includes the well-known eusocial honeybees and bumblebees. As a starting point for selecting the most meaningful partitions in the data, we grouped characters as morphological modules, highly integrated trait complexes that as a result of developmental constraints or coordinated selection we expect to share an evolutionary history and trajectory. In order to assess conflict and coherence across and within these morphological modules, we used recently developed approaches for computing Bayesian phylogenetic information allied with model comparisons using Bayes factors. We found that despite considerable conflict among morphological complexes, accounting for among-character and among-partition rate variation with individual gamma distributions, rate multipliers, and linked branch lengths can lead to coherent phylogenetic inference using morphological data. We suggest that evaluating information content and dissonance among partitions is a useful step in estimating phylogenies from morphological data, just as it is with molecular data. Furthermore, we argue that adopting emerging approaches for investigating dissonance in genomic datasets may provide new insights into the integration and evolution of anatomical complexes. [Apidae; entropy; morphological modules; phenotypic integration; phylogenetic information.] [ABSTRACT FROM AUTHOR]
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- 2021
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23. Insights into Bee Evolution: A Tribute to Charles D. Michener
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Danforth, Bryan N. and Almeida, Eduardo A. B.
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- 2008
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24. Amiseginae and Cleptinae from northeastern Brazil, with the description of four new species (Hymenoptera, Chrysididae).
- Author
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Lucena, Daercio A. A., Almeida, Eduardo A. B., and Zanella, Fernando C. V.
- Subjects
- *
HYMENOPTERA , *SPECIES , *BRACONIDAE , *RAIN forests , *DECIDUOUS forests - Abstract
The diversity of two subfamilies of cuckoo wasps in northeastern Brazil is reviewed. Four new species are described and illustrated: Amisega boyi Lucena, sp. nov., A. sertaneja Lucena, sp. nov., and Duckeia dudui Lucena, sp. nov. (Amiseginae), and Cleptidea nordestina Lucena, sp. nov. (Cleptinae). These new species of Amisega and Duckeia represent the first records of both genera in the core zone of the Caatinga dry region, and they seem to be endemic to this portion of the region. The other two Amisega species previously recorded in northeastern Brazil are restricted to ecotone habitats between Caatinga and Atlantic forest. Cleptidea nordestina Lucena, sp. nov. (Cleptinae) is the most septentrional record for the fasciata species group in South America. With the present contribution, the total recorded diversity of Amiseginae and Cleptinae in northeastern Brazil is represented by the following species: A. boyi Lucena, sp. nov., A. flavipes Kimsey, 1987, A. sertaneja Lucena, sp. nov., A. similis Kimsey, 1987, and D. dudui Lucena, sp. nov. (Amiseginae), and C. nordestina Lucena, sp. nov. (Cleptinae). [ABSTRACT FROM AUTHOR]
- Published
- 2021
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25. Widespread Gene Flow Model Explains the Genetic–Morphological Variation in a Giant Water Bug Species Under Fine-Scale Spatial Sampling.
- Author
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Stefanello, Fabiano, Menezes, Rodolpho S T, Ribeiro, José Ricardo I, and Almeida, Eduardo A B
- Subjects
LAST Glacial Maximum ,GENE flow ,FRESHWATER biodiversity ,GLACIATION ,POPULATION dynamics ,FRESHWATER habitats ,SPECIES - Abstract
The population dynamics of freshwater organisms are expected to be related to the connectivity among comparable streams, ponds, or rivers in a patchy habitat. Here, we investigated the population dynamics of the giant water bug, Belostoma angustum Lauck 1964 (Hemiptera: Belostomatidae), in a fine-scale spatial sampling, and evaluated which gene flow model previously described for freshwater organisms could explain the genetic–morphological variation in this species. For these purposes, we evaluated genetic and morphological variations, as well as the demographic history of this freshwater insect. Our genetic analyses showed a lack of geographical structure within B. angustum populations across the evaluated range, concordant with widespread gene flow model. Our findings of the demographic history of B. angustum suggest recent and rapid expansion beginning during the late Pleistocene after the Last Glacial Maximum. Likewise, we did not find geographically structured morphological variation in B. angustum , except for body size. The lack of structure of genetic–morphological variation in B. angustum could be explained by a stepping ponds system resulting in the widespread gene flow detected among populations of this species. The warmer and wetter climatic conditions after the last glacial period may have favored the demographic expansion of B. angustum populations due to the increasing of potential freshwater habitats and food resources. This favorable habitat probably allowed the stepping ponds dispersal mode resulting in the verified geographically unstructured genetic–morphological variation. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
26. The diversification of neopasiphaeine bees during the Cenozoic (Hymenoptera: Colletidae).
- Author
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Almeida, Eduardo A. B., Packer, Laurence, Melo, Gabriel A. R., Danforth, Bryan N., Cardinal, Sophie C., Quinteiro, Fábio B., and Pie, Marcio R.
- Subjects
- *
COLLETIDAE , *CENOZOIC Era , *INSECT evolution , *INSECT phylogeny , *BIOGEOGRAPHY - Abstract
The biogeography of colletid bees as a whole can be explained by several South American‐Australian trans‐Antarctic interchanges. Within Colletidae, neopasiphaeine bees form a large group that has not been adequately studied, even though they are interesting both from the biogeographical viewpoint for fitting well the austral Gondwanan track and for their associations to host plants. The present paper integrates phylogenetic, biogeographic and paleontological data to reconstruct the evolutionary history of Neopasiphaeinae, with special emphasis on the New World taxa, relating the evolution of these bees to changes, such as the Andes uplift and expansion of open vegetation biomes. First, we propose a phylogenetic hypothesis for the Neopasiphaeinae using one mitochondrial and five nuclear loci. Phylogenetic relationships and divergence time estimation were simultaneously inferred in a Bayesian framework, and the tempo of neopasiphaeine diversification was investigated using lineage‐through‐time plots. The historical biogeography of neopasiphaeine bees was investigated in a likelihood framework. The clade represented by Neopasiphaeinae is strongly supported within Colletidae, and the bulk of their genera can be divided into two major sister‐clades that diverged during the Eocene: one endemic to the Australian region and the other to the Neotropical region. Divergence times among most neotropical genera of Neopasiphaeinae indicate that they differentiated and started their diversification during the Miocene. Our results depict a complex process of geographic evolution in the Neotropical clade, which probably relates to important changes in the neotropical climates and biota beginning at the Oligocene and became more marked in the Miocene. We present a scenario of the neotropical Neopasiphaeinae initially associated with areas of open vegetation in subtropical and temperate portions of South America, followed by multiple separations of lineages east and west of the Andes, and more recent occupations of habitats in tropical portions of the continent. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
27. Phylogenetic relationships and biogeography of the Ipsiura cuckoo wasps (Hymenoptera: Chrysididae).
- Author
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Lucena, Daercio A. A., Almeida, Eduardo A. B., and Kimsey, Lynn S.
- Subjects
- *
PHYLOGENY , *BIOGEOGRAPHY , *VICARIANCE , *CHRYSIDIDAE , *HYMENOPTERA - Abstract
Phylogenetic studies addressing relationships among chrysidid wasps have been limited. There are no hypotheses proposed for the Neotropical lineages of Chrysidini other than the classic cladogram published in the 1990s by Kimsey and Bohart. Herein we present a cladistic analysis based on 64 morphological characters coded for 54 species of Chrysidini, 32 of them being Ipsiura and 22 representing Caenochrysis, Chrysis, Exochrysis, Gaullea, Neochrysis, and Pleurochrysis. The species of Ipsiura were recovered as monophyletic and as the sister clade of Neochrysis in all most parsimonious trees. We discuss the high plasticity of some morphological characters as evidenced by their high homoplasy in the phylogenetic results, and we clarify the main morphological changes inferred on the phylogenetic tree for this genus. The effects of the inferred homoplasy were evaluated under an implied weighting cladistic analysis, and from a probabilistic perspective with Bayesian inference. Those alternative strategies did not alter the general conclusions about the monophyly of Ipsiura or the generic relationships in Chrysidini (changes were noticed in the species‐level relationships within certain parts of Ipsiura, where low branch support was common across all approaches). Among the species groups proposed by Linsenmaier (1985), only the marginalis group was recovered as monophyletic. We also evaluated the convoluted biogeographic history of the group. The resulting historical reconstructions indicate a complicated scenario of diversification of these wasps in the Neotropics, and a close association with forested biomes is discussed. This is the first phylogenetic study focusing on the Neotropical cuckoo wasps of the tribe Chrysidini.Species groups previously recognized in Ipsiura are shown to be artificial, and we clarify aspects of the morphological evolution of the clade.Our biogeographical results suggest that areas which are presently forested environments may have played a relevant role in the diversification of these cuckoo wasps. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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28. Comparative morphology of internal structures of the mesosoma of bees with an emphasis on the corbiculate clade (Apidae: Apini).
- Author
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PORTO, DIEGO S., ALMEIDA, EDUARDO A. B., and VILHELMSEN, LARS
- Subjects
- *
INSECT phylogeny , *HONEYBEES , *PHENOTYPES , *HYMENOPTERA , *COMPARATIVE biology , *PHYSIOLOGY - Abstract
Complex internal skeletal structures, despite their potential as rich sources of phylogenetic information, are still poorly described and used in comparative studies of insects in general, and bees in particular. In this study we present the results of a comprehensive investigation of the internal structures of the mesosoma of bees (e.g. prosternum, propleuron, mesofurca/metafurca and mesophragma); a comparative study was undertaken for bees in general with special emphasis on the tribe Apini. Phylogenetically informative characters are defined and the morphological terminology used for bees is standardized to that used for other Hymenoptera. The potential of these morphological complexes as sources of phylogenetic information was evaluated contrasting the data obtained here with alternative scenarios for corbiculate phylogeny and a phylogenetic analysis was performed. The prosternum possessed the largest number of unambiguous character state changes - nine transformations in the most parsimonious scenario. The changes include the produced lateral processes of the prosternum, absence of the profurcal pit, constriction between the basisternum and the furcasternum, and absence of pubescence on the surface of the basisternum. On the other hand, considerable homoplasy was observed particularly for the characters from the propleuron and mesofurca/metafurca. This may be the consequence of a long morphological branch separating Apini from the remaining apids or a rapid diversification of the corbiculate lineages. In this context, the inclusion of fossil information and use of new technologies for phenotypic studies can open new windows for future comparative morphological studies in bees. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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29. Comparative morphology of the mandibles and head structures of corbiculate bees (Hymenoptera: Apidae: Apini).
- Author
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PORTO, DIEGO S., VILHELMSEN, LARS, and ALMEIDA, EDUARDO A. B.
- Subjects
BEES ,INSECT morphology ,INSECT size ,PHYLOGENY ,MANDIBLE measurement - Abstract
Phylogenetic relationships of corbiculate bees have been a well-known focus of controversies over the past 30 years. The majority of the morphological datasets support the monophyly of Apina + Meliponina, whereas molecular datasets recover Meliponina as sister to Bombina. This issue is especially critical to the proper understanding of the evolution of clusters of traits that define the corbiculate eusocial behaviour. This work provides a description and discussion on characters of the head capsule, mandibles and sitophore of bees. Thirty-three characters are proposed and optimized within concurrent phylogenetic hypotheses for corbiculate bees, which results in seven derived character-states supporting the monophyly of the Apina + Meliponina + Bombina and nine supporting the Apina + Meliponina clades. Although some striking synapomorphies (e.g. tentorial bridge, pleurostomal condyle, hypopharyngeal lobe) support the former clade, most characters supporting the latter (i.e. Apina + Meliponina) were losses/reductions. Moreover, two previously undescribed character transformations on hypostoma and sitophore favour the Bombina + Meliponina clade. Internal head capsule characters are useful for phylogenetic analysis in comparative studies of bees, and corbiculate bees in particular, when efforts are made to solve the 'corbiculate controversy'. An attempt is made to standardize the current terminology used for bees and for other Hymenoptera. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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30. Molecular phylogeny and historical biogeography of the bee genus Colletes Latreille, 1802 (Hymenoptera: Apiformes: Colletidae), based on mitochondrial COI and nuclear 28S sequence data.
- Author
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Kuhlmann, Michael, Almeida, Eduardo A. B., Laurenne, Nina, and Quicke, Donald L. J.
- Subjects
- *
COLLETES , *COLLETIDAE , *PHYLOGENY , *ANIMAL classification , *BIOGEOGRAPHY , *CYTOCHROME oxidase , *NUCLEOTIDES , *ANIMAL diversity - Abstract
A phylogenetic analysis of the intrageneric relationships within the bee genus Colletes using a combined data set of the mitochondrial cytochrome oxidase 1 (COI) and 28S sequences is presented and its implications for historical biogeography are investigated. We analyzed 91 out of 469 described Colletes species (19.4%) from the entire range of distribution and 25 outgroup taxa representing all colletid subfamilies closely related to Colletinae. Eight different combinations of alignment parameters were used for the 28S data, and our combined data set comprised between 1801 and 1845 aligned nucleotides with COI contributing 339 informative bases and 28S between 318 and 360 informative sites. Our results corroborate the monophyly of about half of the Old World subgenera and show the need for a taxonomic re-delimitation of other groups currently accepted. The phylogenetic results confirm the South American origin of Colletes and multiple faunal exchange events between North America and Eurasia. The last continent colonized was Africa south of the Sahara, which experienced at least two independent invasions. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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31. Two hundred years of homology and 50 years of “Essentialism”.
- Author
-
Almeida, Eduardo A. B.
- Subjects
- *
EMBRYOLOGY , *NONFICTION - Abstract
The article reviews the book "The Changing Role of the Embryo in Evolutionary Thought: Roots of Evo-Devo," by Ron Amundson.
- Published
- 2007
- Full Text
- View/download PDF
32. Phylogenomic insights into the worldwide evolutionary relationships of the stingless bees (Apidae, Meliponini).
- Author
-
Lepeco A, Branstetter MG, Melo GAR, Freitas FV, Tobin KB, Gan J, Jensen J, and Almeida EAB
- Subjects
- Animals, Bees genetics, Bees classification, Bayes Theorem, Sequence Analysis, DNA, Evolution, Molecular, Biological Evolution, Phylogeny
- Abstract
Stingless bees (tribe Meliponini) are remarkable for their characteristically large social colonies, their capacity to produce honey and other useful products, and their morphological and behavioral diversity. They have a disjunct pan-tropical distribution, primarily occurring in warm and humid environments in the Neotropical, Afrotropical, and Indo-Australasian regions. Even though phylogenetic hypotheses have been proposed for Meliponini based on morphology and molecular data, many questions are still unsolved regarding the evolutionary relationships and systematics of the tribe. In this contribution, we present a large phylogenomic dataset comprising over 2500 ultra-conserved element (UCE) loci sequenced for 153 species of Meliponini, representing all known genera of stingless bees. The genera Camargoia, Paratrigonoides, Plectoplebeia, Cleptotrigona, Ebaiotrigona, Papuatrigona, Pariotrigona, Platytrigona, and Sahulotrigona were included in molecular phylogenetic analyses for the first time. Concatenated and species-tree analyses were performed using different partitioning strategies and summary methods. We performed gene-genealogy interrogation (GGI) on several recalcitrant nodes to resolve discordances among recovered tree topologies. Results were mostly consistent among analyses, recovering three main lineages of Meliponini congruent with the biogeographic domains to which they are associated. Within major clades, discordances were found in relation to previous works. The genus Frieseomelitta was recovered as paraphyletic in relation to Trichotrigona, and the genus Lepidotrigona was revealed to be composed of two independent lineages. Even though concatenated and weighted ASTRAL analyses were mostly effective in recovering the relationships favored by GGI, they retrieved different results in relation to the phylogenetic placements of Oxytrigona and Cephalotrigona. The most favored hypothesis in GGI analyses was not found in any other analyses, being more congruent with morphological evidence and highlighting the relevance of exploring the support given to alternative hypotheses through topological tests. Recent advances in our capacity to generate molecular sequences from old specimens using modern sequencing methods allowed for unparalleled sampling across genera, yielding a backbone for the phylogenetic relationships of stingless bees, which will further investigations into their systematics and evolution., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)
- Published
- 2024
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33. Festschrift in honour of Fernando Silveira (Title Page).
- Author
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Gibbs J, Packer L, and Almeida EAB
- Published
- 2024
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34. A tribute to Fernando A. Silveira and his contributions to bee research.
- Author
-
Almeida EAB
- Subjects
- Male, Humans, Bees, Animals, Universities, Holometabola
- Abstract
Fernando A. Silveira had the unique combination of being a sagacious scientist and a remarkable human being. Throughout his career, he made significant contributions to understanding bee diversity and keenly spread this scientific information to the academic community at large and beyond the university walls. His rich character, warm heart, strong voice and laughter are missed by those privileged to be Fernandos students, friends, mentors, and family. In this volume, we honor Fernando A. Silveira, who prematurely passed away at the age of 62, leaving three sons, his wife, and numerous friends.
- Published
- 2024
- Full Text
- View/download PDF
35. A new neopasiphaeine bee associated with flowers of Loasaceae (Hymenoptera: Colletidae: Actenosigynes).
- Author
-
Siriani-Oliveira S, Jnior JEDS, Schlindwein C, and Almeida EAB
- Subjects
- Male, Bees, Animals, Phylogeny, Flowers, Hymenoptera, Magnoliopsida
- Abstract
The genus Actenosigynes includes two species, A. fulvoniger (Michener, 1989) and A. mantiqueirensis Silveira, 2009, both oligolectic on flowers of Blumenbachia (Loasaceae) in southern Brazil. We describe a third species, Actenosigynes silveirai Siriani-Oliveira, sp. n., and provide additional evidence to the suspected narrow host-plant specificity between bees of this genus and Loasaceae. This new species was only recorded to collect resources on flowers of Aosa, a genus closely related to Blumenbachia in the subfamily Loasoideae. We illustrate female and male specimens of the three species to offer a complete summary of the morphological variation within this modestly sized genus of Neopasiphaeinae, including photographs of male genitalia and associated metasomal sterna. Moreover, we provide an identification key for the three species of Actenosigynes and the first phylogenetic and dating estimate for these taxa. The genus diversified in southern South America during the Miocene-Pliocene, following a more ancient divergence associated with the orogenic events that separated its sister-genus, Torocolletes, west of the Andes. We dedicate this newly described species to Fernando A. Silveira for his contributions to research on Brazilian bee taxonomy and biology.
- Published
- 2024
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36. The evolutionary history of bees in time and space.
- Author
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Almeida EAB, Bossert S, Danforth BN, Porto DS, Freitas FV, Davis CC, Murray EA, Blaimer BB, Spasojevic T, Ströher PR, Orr MC, Packer L, Brady SG, Kuhlmann M, Branstetter MG, and Pie MR
- Subjects
- Bees genetics, Animals, Phylogeny, Genomics, South America, Fossils, Magnoliopsida genetics
- Abstract
Bees are the most significant pollinators of flowering plants. This partnership began ca. 120 million years ago, but the uncertainty of how and when bees spread across the planet has greatly obscured investigations of this key mutualism. We present a novel analysis of bee biogeography using extensive new genomic and fossil data to demonstrate that bees originated in Western Gondwana (Africa and South America). Bees likely originated in the Early Cretaceous, shortly before the breakup of Western Gondwana, and the early evolution of any major bee lineage is associated with either the South American or African land masses. Subsequently, bees colonized northern continents via a complex history of vicariance and dispersal. The notable early absences from large landmasses, particularly in Australia and India, have important implications for understanding the assembly of local floras and diverse modes of pollination. How bees spread around the world from their hypothesized Southern Hemisphere origin parallels the histories of numerous flowering plant clades, providing an essential step to studying the evolution of angiosperm pollination syndromes in space and time., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2023 Elsevier Inc. All rights reserved.)
- Published
- 2023
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37. Taxonomic review of the elampine cuckoo wasps from northeastern Brazil (Hymenoptera: Chrysididae), with the description of three new species.
- Author
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Lucena DAA, Santos-Neto PE, Zanella FCV, and Almeida EAB
- Subjects
- Animals, Brazil, Body Size, Birds, Wasps, Hymenoptera
- Abstract
The diversity of the Elampini cuckoo wasps in northeastern Brazil is reviewed. Three new species are described: Hedychrum oxente Lucena & Zanella sp. nov., Holopyga lunae Lucena sp. nov., and Muesebeckidium clemensi Lucena & Zanella sp. nov. A lectotype is designated for Holopyga piliventris Ducke, 1907 and herein illustrated. Elampus aequinoctialis Ducke, 1901 is restored as a valid species (previously synonymized with Elampus gayi Spinola, 1851) and diagnosed. Holophris huberi (Ducke, 1901) and Muesebeckidium clemensi sp. nov. represent the first records of both genera to northeastern Brazil. New records along with up-to-date distributional maps are discussed, and an identification key to the species of Holopyga from northeastern Brazil is provided. The total diversity of Elampini recorded for northeastern Brazil is now represented by the following eight species: Elampus aequinoctialis Ducke, 1901, Exallopyga guatemalensis (Cameron, 1888), Hedychrum oxente Lucena & Zanella sp. nov., Holophris huberi (Ducke, 1901), Holopyga iheringi du Buysson, 1901, H. lunae Lucena sp. nov., H. piliventris Ducke, 1907, and Muesebeckidium clemensi Lucena & Zanella sp. nov.
- Published
- 2022
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38. Illustrated catalogue of type specimens of insects (Hexapoda) at Coleção Entomológica "Prof. J.M.F.Camargo" (RPSP), Universidade de São Paulo, Brazil.
- Author
-
Almeida EAB, Costa AM, Filho JAT, Zichinelli MMP, and Quinteiro FB
- Subjects
- Animals, Bees, Brazil, Drosophilidae
- Abstract
The present catalogue lists the insect types (Hexapoda) deposited at Coleção Entomológica "Prof. J.M.F.Camargo" (RPSP), Universidade de São Paulo, Ribeirão Preto, Brazil. This collection is known as one of the most significant depositories of stingless bees (Hymenoptera: Apidae: Meliponini) for the Brazilian and Neotropical faunas, largely because of the legacy of Professor João Franco Maria de Camargo (in memoriam) and co-workers. The Meliponini constitute the most emblematic portion of the collection, comprising 3,335 type-specimens (66 holotypes, 3,254 paratypes, and 15 paralectotypes), which represent 132 species-names. In addition to stingless bees, 495 type specimens of other Hymenoptera (23 holotypes and 472 paratypes) are deposited at RPSP representing 71 hymenopteran species-names: Agaonidae (16 names), Andrenidae (3 names), non-Meliponini Apidae (21 names), Chrysididae (2 names), Halictidae (16 names), Colletidae (5 names), Megachilidae (5 names), Melittidae (1 name), Pteromalidae (1 name), and Vespidae (1 name); the only other insect order currently represented by types at RPSP is Diptera (Drosophilidae: 2 names). Altogether, there currently are 3,832 type-specimens deposited at RPSP. Label data and additional information from the RPSP registers, literature sources, and taxonomic remarks are given, including photographs of name bearing types and representatives of other type specimens of the species herein considered.
- Published
- 2020
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39. A comparative study of the pharyngeal plate of Apoidea (Hymenoptera: Aculeata), with implications for the understanding of phylogenetic relationships of bees.
- Author
-
Porto DS and Almeida EAB
- Subjects
- Animals, Microscopy, Electron, Scanning, Pharynx ultrastructure, Bees classification, Bees ultrastructure, Phylogeny
- Abstract
The pharyngeal plate is a morphological complex with extensive anatomical variation among bees and, therefore, potential as a source of phylogenetic information. The pharyngeal plate of bees is divided into four morphologically distinct regions: sitophore, hypopharyngeal lobe, pharyngeal rods, and median oral plate. In this work we illustrate and document in detail for the first time the pharyngeal plate of 43 bee species, providing descriptions of the morphological variation and contrasting these findings with representatives of apoid wasps (Crabronidae and Sphecidae). We evaluate and discuss the potential of this structure as a rich source of morphological information in the context of bee phylogeny and any research potentially impacted by comparative morphological data. The shape of the hypopharyngeal lobe is highly variable among suprageneric taxa of bees and can be readily employed to characterise taxa at various levels. We argue that the global patterns in the variation of the pharyngeal plate can provide information for phylogenetic inference within bees and constructed and coded 10 characters that encompass the most noticeable morphological differences discussed herein., (Copyright © 2019 Elsevier Ltd. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
40. Combining transcriptomes and ultraconserved elements to illuminate the phylogeny of Apidae.
- Author
-
Bossert S, Murray EA, Almeida EAB, Brady SG, Blaimer BB, and Danforth BN
- Subjects
- Animals, Conserved Sequence genetics, Genome genetics, Genomics, Nucleotides genetics, Bees classification, Bees genetics, Phylogeny, Transcriptome genetics
- Abstract
Two increasingly popular approaches to reconstruct the Tree of Life involve whole transcriptome sequencing and the target capture of ultraconserved elements (UCEs). Both methods can be used to generate large, multigene datasets for analysis of phylogenetic relationships in non-model organisms. While targeted exon sequencing across divergent lineages is now a standard method, it is still not clear if UCE data can be readily combined with published transcriptomes. In this study, we evaluate the combination of UCEs and transcriptomes in a single analysis using genome-, transcriptome-, and UCE data for 79 bees in the largest and most biologically diverse bee family, Apidae. Using existing tools, we first developed a workflow to assemble phylogenomic data from different sources and produced two large nucleotide matrices of combined data. We then reconstructed the phylogeny of the Apidae using concatenation- and coalescent-based methods, and critically evaluated the resulting phylogenies in the context of previously published genetic, genomic, and morphological data sets. Our estimated phylogenetic trees are robustly supported and largely congruent with previous molecular hypotheses, from deep nodes to shallow species-level phylogenies. Moreover, the combined approach allows us to resolve controversial nodes of the apid Tree of Life, by clarifying the relationships among the genera of orchid bees (Euglossini) and the monophyly of the Centridini. Additionally, we present novel phylogenetic evidence supporting the monophyly of the diverse clade of cleptoparasitic Apidae and the placement of two enigmatic, oil-collecting genera (Ctenoplectra and Tetrapedia). Lastly, we propose a revised classification of the family Apidae that reflects our improved understanding of apid higher-level relationships., (Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
41. Are the TTAGG and TTAGGG telomeric repeats phylogenetically conserved in aculeate Hymenoptera?
- Author
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Menezes RST, Bardella VB, Cabral-de-Mello DC, Lucena DAA, and Almeida EAB
- Subjects
- Animals, Ants, Base Sequence, Vertebrates, Telomere
- Abstract
Despite the (TTAGG)
n telomeric repeat supposed being the ancestral DNA motif of telomeres in insects, it was repeatedly lost within some insect orders. Notably, parasitoid hymenopterans and the social wasp Metapolybia decorata (Gribodo) lack the (TTAGG)n sequence, but in other representatives of Hymenoptera, this motif was noticed, such as different ant species and the honeybee. These findings raise the question of whether the insect telomeric repeat is or not phylogenetically predominant in Hymenoptera. Thus, we evaluated the occurrence of both the (TTAGG)n sequence and the vertebrate telomere sequence (TTAGGG)n using dot-blotting hybridization in 25 aculeate species of Hymenoptera. Our results revealed the absence of (TTAGG)n sequence in all tested species, elevating the number of hymenopteran families lacking this telomeric sequence to 13 out of the 15 tested families so far. The (TTAGGG)n was not observed in any tested species. Based on our data and compiled information, we suggest that the (TTAGG)n sequence was putatively lost in the ancestor of Apocrita with at least two subsequent independent regains (in Formicidae and Apidae).- Published
- 2017
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42. Repeated evolution of soldier sub-castes suggests parasitism drives social complexity in stingless bees.
- Author
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Grüter C, Segers FH, Menezes C, Vollet-Neto A, Falcón T, von Zuben L, Bitondi MM, Nascimento FS, and Almeida EA
- Subjects
- Animals, Female, Male, Aggression physiology, Body Size, Brazil, Phylogeny, Bees anatomy & histology, Bees classification, Bees physiology, Behavior, Animal physiology, Biological Evolution
- Abstract
The differentiation of workers into morphological castes represents an important evolutionary innovation that is thought to improve division of labor in insect societies. Given the potential benefits of task-related worker differentiation, it is puzzling that physical worker castes, such as soldiers, are extremely rare in social bees and absent in wasps. Following the recent discovery of soldiers in a stingless bee, we studied the occurrence of worker differentiation in 28 stingless bee species from Brazil and found that several species have specialized soldiers for colony defence. Our results reveal that worker differentiation evolved repeatedly during the last ~ 25 million years and coincided with the emergence of parasitic robber bees, a major threat to many stingless bee species. Furthermore, our data suggest that these robbers are a driving force behind the evolution of worker differentiation as targets of robber bees are four times more likely to have nest guards of increased size than non-targets. These findings reveal unexpected diversity in the social organization of stingless bees.Although common in ants and termites, worker differentiation into physical castes is rare in social bees and unknown in wasps. Here, Grüter and colleagues find a guard caste in ten species of stingless bees and show that the evolution of the guard caste is associated with parasitization by robber bees.
- Published
- 2017
- Full Text
- View/download PDF
43. The Neotropical cuckoo wasp genus Ipsiura Linsenmaier, 1959 (Hymenoptera: Chrysididae): revision of the species occurring in Brazil.
- Author
-
Lucena DA, Kimsey LS, and Almeida EA
- Subjects
- Animals, Brazil, Female, Male, Wasps anatomy & histology, Wasps classification
- Abstract
The species of the chrysidid genus Ipsiura are reviewed with emphasis on the taxa occurring in Brazil. In the present study 34 Ipsiura species are recognized, diagnosed, and illustrated. Two new species are described here: Ipsiura bohartiana Lucena sp. nov. and I. duckeana Lucena sp. nov., and two others are transferred from Neochrysis to Ipsiura: I. assecia (Linsenmaier, 1997), comb. nov. and I. guayanensis (Linsenmaier, 1997), comb. nov., increasing to 41 the total of valid species in the genus. New diagnoses and redescriptions are provided for 34 species based on study of their types. For the first time, a comparative and illustrated study of male genitalia is presented for the majority of Ipsiura species. Notes on types and depository collections, a revised key for identification of species along with illustrations of diagnostic features, as well as geographical distribution maps are also given.
- Published
- 2016
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44. Two continents and two names for a Neotropical colletid bee species (Hymenoptera: Colletidae: Neopasiphaeinae): Hoplocolletes ventralis (Friese, 1924).
- Author
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Almeida EA and Quinteiro FB
- Abstract
Neopasiphaeine bees (Apoidea: Colletidae) are known for their Amphinotic distribution in the Australian and Neotropical regions. Affinities between colletid taxa in Australia and South America have been speculated for decades, and have been confirmed by recent phylogenetic hypotheses that indicate a biogeographic scenario compatible with a trans-Antarctic biotic connection during the Paleogene. No neopasiphaeine species occurs on both sides of the Pacific Ocean, but the Neotropical species Hoplocolletes ventralis (Friese, 1924) was described as an Australian taxon due to an error in the specimen labels. This mistake was recognized by CD Michener 50 years ago. We herein report that the same labeling problem also happened with Dasycolletes chalceus Friese, 1924, which remained as a tentatively placed species in the Australian genus Leioproctus until now. Moreover, Dasycolletes chalceus is interpreted as a synonym of Hoplocolletes ventralis. We also provide a revised diagnosis for Hoplocolletes, describe the male of H. ventralis in detail for the first time, including a comparative study of its genitalia and associated sterna.
- Published
- 2015
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45. Say goodbye to tribes in the new house fly classification: A new molecular phylogenetic analysis and an updated biogeographical narrative for the Muscidae (Diptera).
- Author
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Haseyama KL, Wiegmann BM, Almeida EA, and de Carvalho CJ
- Subjects
- Animals, Antarctic Regions, Australia, Bayes Theorem, Biological Evolution, Electron Transport Complex IV genetics, Houseflies classification, Houseflies genetics, Insect Proteins genetics, Peptide Elongation Factor 1 genetics, Phylogeography, Sequence Analysis, DNA, South America, Muscidae classification, Muscidae genetics, Phylogeny
- Abstract
House flies are one of the best known groups of flies and comprise about 5000 species worldwide. Despite over a century of intensive taxonomic research on these flies, classification of the Muscidae is still poorly resolved. Here we brought together the most diverse molecular dataset ever examined for the Muscidae, with 142 species in 67 genera representing all tribes and all biogeographic regions. Four protein coding genes were analyzed: mitochondrial CO1 and nuclear AATS, CAD (region 4) and EF1-α. Maximum likelihood and Bayesian approaches were used to analyze five different partitioning schemes for the alignment. We also used Bayes factors to test monophyly of the traditionally accepted tribes and subfamilies. Most subfamilial taxa were not recovered in our analyses, and accordingly monophyly was rejected by Bayes factor tests. Our analysis consistently found three main clades of Muscidae and so we propose a new classification with only three subfamilies without tribes. Additionally, we provide the first timeframe for the diversification of all major lineages of house flies and examine contemporary biogeographic hypotheses in light of this timeframe. We conclude that the muscid radiation began in the Paleocene to Eocene and is congruent with the final stages of the breakup of Gondwana, which resulted in the complete separation of Antarctica, Australia, and South America. With this newly proposed classification and better understanding of the timing of evolutionary events, we provide new perspectives for integrating morphological and ecological evolutionary understanding of house flies, their taxonomy, phylogeny, and biogeography., (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Published
- 2015
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46. Does counting species count as taxonomy? On misrepresenting systematics, yet again.
- Author
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de Carvalho MR, Ebach MC, Williams DM, Nihei SS, Trefaut Rodrigues M, Grant T, Silveira LF, Zaher H, Gill AC, Schelly RC, Sparks JS, Bockmann FA, Séret B, Ho HC, Grande L, Rieppel O, Dubois A, Ohler A, Faivovich J, Assis LCS, Wheeler QD, Goldstein PZ, de Almeida EAB, Valdecasas AG, and Nelson G
- Abstract
Recent commentary by Costello and collaborators on the current state of the global taxonomic enterprise attempts to demonstrate that taxonomy is not in decline as feared by taxonomists, but rather is increasing by virtue of the rate at which new species are formally named. Having supported their views with data that clearly indicate as much, Costello et al. make recommendations to increase the rate of new species descriptions even more. However, their views appear to rely on the perception of species as static and numerically if not historically equivalent entities whose value lie in their roles as "metrics". As such, their one-dimensional portrayal of the discipline, as concerned solely with the creation of new species names, fails to take into account both the conceptual and epistemological foundations of systematics. We refute the end-user view that taxonomy is on the rise simply because more new species are being described compared with earlier decades, and that, by implication, taxonomic practice is a formality whose pace can be streamlined without considerable resources, intellectual or otherwise. Rather, we defend the opposite viewpoint that professional taxonomy is in decline relative to the immediacy of the extinction crisis, and that this decline threatens not just the empirical science of phylogenetic systematics, but also the foundations of comparative biology on which other fields rely. The allocation of space in top-ranked journals to propagate views such as those of Costello et al. lends superficial credence to the unsupportive mindset of many of those in charge of the institutional fate of taxonomy. We emphasize that taxonomy and the description of new species are dependent upon, and only make sense in light of, empirically based classifications that reflect evolutionary history; homology assessments are at the centre of these endeavours, such that the biological sciences cannot afford to have professional taxonomists sacrifice the comparative and historical depth of their hypotheses in order to accelerate new species descriptions., (© The Willi Hennig Society 2013.)
- Published
- 2014
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47. The impact of molecular data on our understanding of bee phylogeny and evolution.
- Author
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Danforth BN, Cardinal S, Praz C, Almeida EA, and Michez D
- Subjects
- Animals, Bees anatomy & histology, Bees genetics, Evolution, Molecular, Feeding Behavior, Nesting Behavior, Social Behavior, Bees classification, Bees physiology, Biological Evolution, Phylogeny
- Abstract
Our understanding of bee phylogeny has improved over the past fifteen years as a result of new data, primarily nucleotide sequence data, and new methods, primarily model-based methods of phylogeny reconstruction. Phylogenetic studies based on single or, more commonly, multilocus data sets have helped resolve the placement of bees within the superfamily Apoidea; the relationships among the seven families of bees; and the relationships among bee subfamilies, tribes, genera, and species. In addition, molecular phylogenies have played an important role in inferring evolutionary patterns and processes in bees. Phylogenies have provided the comparative framework for understanding the evolution of host-plant associations and pollen specialization, the evolution of social behavior, and the evolution of parasitism. In this paper, we present an overview of significant discoveries in bee phylogeny based primarily on the application of molecular data. We review the phylogenetic hypotheses family-by-family and then describe how the new phylogenetic insights have altered our understanding of bee biology.
- Published
- 2013
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48. Phylogeny of colletid bees (Hymenoptera: Colletidae) inferred from four nuclear genes.
- Author
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Almeida EA and Danforth BN
- Subjects
- Animals, Bayes Theorem, Bees classification, Likelihood Functions, Models, Genetic, Sequence Alignment, Sequence Analysis, DNA, Species Specificity, Bees genetics, Evolution, Molecular, Genes, Insect, Phylogeny
- Abstract
Colletidae comprise approximately 2500 species of bees primarily distributed in the southern continents (only two colletid genera are widely distributed: Colletes and Hylaeus). Previously published studies have failed to resolve phylogenetic relationships on a worldwide basis and this has been a major barrier to the progress of research regarding systematics and evolution of colletid bees. For this study, data from four nuclear gene loci: elongation factor-1alpha (F2 copy), opsin, wingless, and 28S rRNA were analyzed for 122 species of colletid bees, representing all subfamilies and tribes currently recognized; 22 species belonging to three other bee families were used as outgroups. Bayesian, maximum likelihood, and parsimony methods were employed to investigate the phylogenetic relationships within Colletidae and resulted in highly congruent and well-resolved trees. The phylogenetic results show that Colletidae are monophyletic and that all traditionally recognized subfamilies (except Paracolletinae) are also strongly supported as monophyletic. Our phylogenetic hypothesis provides a framework within which broad questions related to the taxonomy, biogeography, morphology, evolution, and ecology of colletid bees can be addressed.
- Published
- 2009
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