88 results on '"André Freitas"'
Search Results
2. Comparative Analysis of the Culture of Pink Shrimp Farfantepenaeus brasiliensis and Pacific White Shrimp Litopenaeus vannamei in Biofloc System
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Dariano Krummenauer, André Freitas da Silva, Missileny Xavier, Geraldo Kipper Foes, Luís H. Poersch, Alessandro Cardozo, and Wilson Wasielesky
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shrimp production ,biofloc ,pink shrimp ,Pacific white shrimp ,Aquaculture. Fisheries. Angling ,SH1-691 - Abstract
Shrimp farming in the Biofloc Technology System (BFT) is already considered an alternative to the traditional culture. The bioflocs maintain the water quality and can be used as a food supplement for shrimp. The Pacific white shrimp Litopenaeus vannamei forms the basis for most of the production in BFT. However, its culture is limited by the low temperatures. Thus, the BFT culture potential of native species, such as the pink shrimp Farfantepenaeus brasiliensis, should be considered. The present study aimed to compare the cultures of F. brasiliensis and L. vannamei in the grow-out phase in the BFT system. The experiment comprised two treatments: (FB), grown out of F. brasiliensis, and (LV), grown out of L. vannamei. The study lasted 70 days and was conducted at the Marine Station of Aquaculture at the Federal University of Rio Grande, Rio Grande do Sul State, Brazil. The stocking density was 100 shrimp/m² for both species. The shrimp were fed twice a day with commercial food. The physicochemical parameters of the water were monitored throughout the experimental period. The results showed that all physicochemical parameters of the water remained within the tolerated limits for both species. However, during the growth phase in the BFT, it was observed that the L. vannamei shrimp showed a better zootechnical performance than F. brasiliensis. The results indicate that L. vannamei has a higher capacity to catch bioflocs as supplementary food, demonstrating a better response of that species to the BFT system in the grow-out phase compared to F. brasiliensis.
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- 2024
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3. A systematic review of biologically-informed deep learning models for cancer: fundamental trends for encoding and interpreting oncology data
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Magdalena Wysocka, Oskar Wysocki, Marie Zufferey, Dónal Landers, and André Freitas
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Multi-omics Data ,Cancer Genomics ,Deep Learning ,Explainable AI ,Graph Neural Networks ,Sparse Neural Networks ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background There is an increasing interest in the use of Deep Learning (DL) based methods as a supporting analytical framework in oncology. However, most direct applications of DL will deliver models with limited transparency and explainability, which constrain their deployment in biomedical settings. Methods This systematic review discusses DL models used to support inference in cancer biology with a particular emphasis on multi-omics analysis. It focuses on how existing models address the need for better dialogue with prior knowledge, biological plausibility and interpretability, fundamental properties in the biomedical domain. For this, we retrieved and analyzed 42 studies focusing on emerging architectural and methodological advances, the encoding of biological domain knowledge and the integration of explainability methods. Results We discuss the recent evolutionary arch of DL models in the direction of integrating prior biological relational and network knowledge to support better generalisation (e.g. pathways or Protein-Protein-Interaction networks) and interpretability. This represents a fundamental functional shift towards models which can integrate mechanistic and statistical inference aspects. We introduce a concept of bio-centric interpretability and according to its taxonomy, we discuss representational methodologies for the integration of domain prior knowledge in such models. Conclusions The paper provides a critical outlook into contemporary methods for explainability and interpretability used in DL for cancer. The analysis points in the direction of a convergence between encoding prior knowledge and improved interpretability. We introduce bio-centric interpretability which is an important step towards formalisation of biological interpretability of DL models and developing methods that are less problem- or application-specific.
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- 2023
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4. Introduction to Mathematical Language Processing: Informal Proofs, Word Problems, and Supporting Tasks
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Jordan Meadows and André Freitas
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Computational linguistics. Natural language processing ,P98-98.5 - Published
- 2023
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5. Diff-Explainer: Differentiable Convex Optimization for Explainable Multi-hop Inference
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Mokanarangan Thayaparan, Marco Valentino, Deborah Ferreira, Julia Rozanova, and André Freitas
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Computational linguistics. Natural language processing ,P98-98.5 - Abstract
AbstractThis paper presents Diff-Explainer, the first hybrid framework for explainable multi-hop inference that integrates explicit constraints with neural architectures through differentiable convex optimization. Specifically, Diff- Explainer allows for the fine-tuning of neural representations within a constrained optimization framework to answer and explain multi-hop questions in natural language. To demonstrate the efficacy of the hybrid framework, we combine existing ILP-based solvers for multi-hop Question Answering (QA) with Transformer-based representations. An extensive empirical evaluation on scientific and commonsense QA tasks demonstrates that the integration of explicit constraints in a end-to-end differentiable framework can significantly improve the performance of non- differentiable ILP solvers (8.91%–13.3%). Moreover, additional analysis reveals that Diff-Explainer is able to achieve strong performance when compared to standalone Transformers and previous multi-hop approaches while still providing structured explanations in support of its predictions.
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- 2022
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6. A Survey of Text Games for Reinforcement Learning Informed by Natural Language
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Philip Osborne, Heido Nõmm, and André Freitas
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Computational linguistics. Natural language processing ,P98-98.5 - Abstract
AbstractReinforcement Learning has shown success in a number of complex virtual environments. However, many challenges still exist towards solving problems with natural language as a core component. Interactive Fiction Games (or Text Games) are one such problem type that offer a set of safe, partially observable environments where natural language is required as part of the Reinforcement Learning solution. Therefore, this survey’s aim is to assist in the development of new Text Game problem settings and solutions for Reinforcement Learning informed by natural language. Specifically, this survey: 1) introduces the challenges in Text Game Reinforcement Learning problems, 2) outlines the generation tools for rendering Text Games and the subsequent environments generated, and 3) compares the agent architectures currently applied to provide a systematic review of benchmark methodologies and opportunities for future researchers.
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- 2022
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7. Transformers and the Representation of Biomedical Background Knowledge
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Oskar Wysocki, Zili Zhou, Paul O’Regan, Deborah Ferreira, Magdalena Wysocka, Dónal Landers, and André Freitas
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Computational linguistics. Natural language processing ,P98-98.5 - Abstract
Specialized transformers-based models (such as BioBERT and BioMegatron) are adapted for the biomedical domain based on publicly available biomedical corpora. As such, they have the potential to encode large-scale biological knowledge. We investigate the encoding and representation of biological knowledge in these models, and its potential utility to support inference in cancer precision medicine—namely, the interpretation of the clinical significance of genomic alterations. We compare the performance of different transformer baselines; we use probing to determine the consistency of encodings for distinct entities; and we use clustering methods to compare and contrast the internal properties of the embeddings for genes, variants, drugs, and diseases. We show that these models do indeed encode biological knowledge, although some of this is lost in fine-tuning for specific tasks. Finally, we analyze how the models behave with regard to biases and imbalances in the dataset.
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- 2023
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8. Teaching Research Methods Courses in Education: Towards a Research-Based Culture
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João Filipe Matos, André Freitas, Elsa Estrela, Carla Galego, and João Piedade
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research methodologies in education ,teaching research methods ,student-centered learning approach ,pedagogical culture of research methods ,Social Sciences - Abstract
This paper aims to identify and discuss what constitutes a research-based pedagogical culture in teaching research methods courses in master’s and doctoral programs in education. The discussion draws on empirical results of a set of five focus group interviews with teachers responsible for teaching research methods courses in educational programs in higher education institutions in Portugal. Data are analyzed and interpreted within a situated learning framework that acknowledges the relevance of creating social learning spaces which accommodate the variety of students. The article closes with a characterization of what could be a research-based pedagogical culture in teaching research methods in advanced studies in education in the near future.
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- 2023
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9. Biomarker identification using dynamic time warping analysis: a longitudinal cohort study of patients with COVID-19 in a UK tertiary hospital
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Alastair Watson, Hang Phan, Florina Borca, Sarah Williams, Tom Wilkinson, Hannah Burke, Anna Freeman, Ahilanandan Dushianthan, Michael Celinski, James Batchelor, Natasha Sheard, Paul Fitzpatrick, Dónal Landers, André Freitas, Paul O’Regan, and Oskar Wysocki
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Medicine - Abstract
Objectives COVID-19 is a heterogeneous disease, and many reports have described variations in demographic, biochemical and clinical features at presentation influencing overall hospital mortality. However, there is little information regarding longitudinal changes in laboratory prognostic variables in relation to disease progression in hospitalised patients with COVID-19.Design and setting This retrospective observational report describes disease progression from symptom onset, to admission to hospital, clinical response and discharge/death among patients with COVID-19 at a tertiary centre in South East England.Participants Six hundred and fifty-one patients treated for SARS-CoV-2 between March and September 2020 were included in this analysis. Ethical approval was obtained from the HRA Specific Review Board (REC 20/HRA/2986) for waiver of informed consent.Results The majority of patients presented within 1 week of symptom onset. The lowest risk patients had low mortality (1/45, 2%), and most were discharged within 1 week after admission (30/45, 67%). The highest risk patients, as determined by the 4C mortality score predictor, had high mortality (27/29, 93%), with most dying within 1 week after admission (22/29, 76%). Consistent with previous reports, most patients presented with high levels of C reactive protein (CRP) (67% of patients >50 mg/L), D-dimer (98%>upper limit of normal (ULN)), ferritin (65%>ULN), lactate dehydrogenase (90%>ULN) and low lymphocyte counts (81%
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- 2022
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10. Teaching and Learning Research Methodologies in Education: A Systematic Literature Review
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João Filipe Matos, João Piedade, André Freitas, Neuza Pedro, Nuno Dorotea, Ana Pedro, and Carla Galego
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research methodologies in education ,teaching research methods in education ,learning research methods in education ,systematic literature review ,learning-centred course designs ,pedagogical culture ,Education - Abstract
This study aims to contribute to understanding of the state of the art regarding the pedagogical cultures associated with teaching and learning research methods in advanced studies education through the identification of trends and pitfalls. The rationale behind this objective is the recognition that most of the research in education comes from academic programmes, in particular master’s and doctoral programmes, which generally include research methods as components. A systematic literature review was adopted as the research methodology, following the PRISMA model. Three stages of article selection were implemented, resulting in the selection of 68 studies out of an initial set of 3631 articles found in the main journal databases. Three specific dimensions were addressed: (i) methodological knowledge, (ii) research competencies, and (iii) pedagogical practices in teaching research methods in education programmes. The results illustrate the complexity of the subject. Learners are constantly reported to hold negative attitudes towards research methods courses, apparently due to instructors’ pedagogical difficulties, which translate into restricted understandings of methodological knowledge. Several misunderstandings between learners and teachers are identified which call for action towards the construction of a research-based scientific culture that will lead to inclusive pedagogical practices in which teachers and learners act as researchers.
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- 2023
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11. Similarity-based equational inference in physics
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Jordan Meadows and André Freitas
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Physics ,QC1-999 - Abstract
Automating the derivation of published results is a challenge, in part due to the informal use of mathematics by physicists compared to that of mathematicians. Following demand, we describe a method for converting informal handwritten derivations into datasets and present an example dataset crafted from a contemporary result in condensed matter. We define an equation reconstruction task completed by rederiving an unknown intermediate equation posed as a state, taken from three consecutive equational states within a derivation. Derivation automation is achieved via computer algebra system (CAS) by applying string-based CAS-reliant actions to states, which mimic mathematical operations and induce state transitions. We implement a symbolic similarity-based heuristic search to solve the equation reconstruction task as an early step towards multi-hop equational inference in physics.
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- 2021
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12. Precision Agriculture in Brazil: The Trajectory of 25 Years of Scientific Research
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Maurício Roberto Cherubin, Júnior Melo Damian, Tiago Rodrigues Tavares, Rodrigo Gonçalves Trevisan, André Freitas Colaço, Mateus Tonini Eitelwein, Maurício Martello, Ricardo Yassushi Inamasu, Osmar Henrique de Castro Pias, and José Paulo Molin
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precision farming ,bibliometrics ,scientific network ,soil health ,crop yield ,Agriculture (General) ,S1-972 - Abstract
Precision agriculture (PA) stands out as an innovative way to manage production resources, increasing the efficiency and the socioeconomic and environmental sustainability of agricultural systems. In Brazil, the principles and tools of PA started to be adopted in the late 1990s. To reveal the scientific trajectory and advances in PA taken over the past 25 years in Brazil, we conducted a comprehensive and systematic literature review. After searching for available peer-reviewed literature, 442 publications were selected to compose the database. Our bibliometric review showed that the scientific PA network is growing in Brazil, with the number and quality of publications, the number of interactions among research groups, and the number of international collaborations increasing. Soil and plant management are the two main pillars of PA research (~61% of the publications). More recently, research has evolved to include other areas, such as the use of proximal sensors to monitor soil and crop development, remote sensing using images from satellites and remotely piloted aircraft systems, and the development of decision support tools. A substantial part of Brazilian PA research is marked by the evaluation and adaptation of imported technologies, a scenario that is slowly changing with the growth of well-trained human resources and advances in national industry. Based on Brazilian scientific history and remaining challenges, the key potential areas for future research are (i) the development of digitally based decision support systems, i.e., a shift of focus from on-farm data technologies towards effective, site-specific decision making based on digital data and improved analytics; (ii) on-farm precision experimentation to underpin on-farm data collection and the development of new decision tools; and (iii) novel machine learning approaches to promote the implementation of digitally based decision support systems.
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- 2022
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13. Lateral-Expansion Pharyngoplasty: Combined Technique for the Treatment of Obstructive Sleep Apnea Syndrome
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José Antonio Pinto, Luciana Balester Mello de Godoy, Heloisa dos Santos Sobreira Nunes, Kelly Elia Abdo, Gabriella Spinola Jahic, André Freitas Cavallini, Gabriel Santos Freitas, Davi Knoll Ribeiro, and Caue Duarte
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obstructive sleep apnea ,polysomnography ,upper airway surgery ,surgical technique ,pharyngeal muscles ,pharynx/surgery ,Medicine ,Otorhinolaryngology ,RF1-547 - Abstract
Introduction Obstructive sleep apnea syndrome (OSAS) is a multifactorial disease characterized by episodes of partial or complete collapse during sleep of different regions of the upper airway. Surgery for OSAS evolved with the introduction of different techniques, considering new surgical concept of reconstruction of the upper airway. Objective To retrospectively evaluate the effectiveness of a new approach aimed at reducing pharyngeal collapse by combining two surgical techniques: lateral and expansion pharyngoplasty. Methods We reviewed the medical records of 38 patients with OSAS undergoing lateral/expansion pharyngoplasty from January 2012 to December 2016. The following data were collected: patient age, gender, and pre- and postoperative body mass index (BMI), Epworth sleepiness scale (ESS) scores, snoring visual analogue scale (VAS) scores, and polysomnography (PSG) results. Results The PSG results showed a significant reduction in the apnea/hypopnea index (AHI) from 22.4 ± 27.3 events/h preoperatively to 13.6 ± 17.9 events/h postoperatively (p = 0.009), with postoperative AHI reduction greater than 50% in 63.2% of the patients. There was also a significant reduction in the microarousal index (19.5 ± 22.6 vs 11.0 ± 13.4 events/h; p = 0.001) and in the minimum oxygen saturation (82.6 ± 10.3 vs 86.9 ± 11.1; p = 0.007). Conclusions Lateral-expansion pharyngoplasty represents a new surgical strategy for the treatment of OSAS in patients with palatal collapse by combining two different techniques: lateral and expansion pharyngoplasty. The two techniques, performed as a one-stage procedure, led to improvements in excessive daytime sleepiness, snoring, and PSG respiratory parameters by acting on lateral and retropalatal collapse, producing favorable results with good applicability in otolaryngology clinical practice.
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- 2020
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14. Broadacre Mapping of Wheat Biomass Using Ground-Based LiDAR Technology
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André Freitas Colaço, Michael Schaefer, and Robert G. V. Bramley
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laser scanner ,site-specific management ,nitrogen ,precision agriculture ,digital agriculture ,Science - Abstract
Crop biomass is an important attribute to consider in relation to site-specific nitrogen (N) management as critical N levels in plants vary depending on crop biomass. Whilst LiDAR technology has been used extensively in small plot-based phenomics studies, large-scale crop scanning has not yet been reported for cereal crops. A LiDAR sensing system was implemented to map a commercial 64-ha wheat paddock to assess the spatial variability of crop biomass. A proximal active reflectance sensor providing spectral indices and estimates of crop height was used as a comparison for the LiDAR system. Plant samples were collected at targeted locations across the field for the assessment of relationships between sensed and measured crop parameters. The correlation between crop biomass and LiDAR-derived crop height was 0.79, which is similar to results reported for plot scanning studies and greatly superior to results obtained for the spectral sensor tested. The LiDAR mapping showed significant crop biomass variability across the field, with estimated values ranging between 460 and 1900 kg ha−1. The results are encouraging for the use of LiDAR technology for large-scale operations to support site-specific management. To promote such an approach, we encourage the development of an automated, on-the-go data processing capability and dedicated commercial LiDAR systems for field operation.
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- 2021
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15. Engaging in Narrative Inquiries with Children and Youth, by Jean Clandinin, Vera Caine, Sean Lessard and Janice Huber
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André Freitas
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Education (General) ,L7-991 - Published
- 2019
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16. Salivary assessment of the immune/inflammatory responses and oxidative stress in older adults vaccinated with CoronaVac or ChadOx-1
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Vieira, Jeniffer, de Oliveira, Thiago Vinícius Vieira, Queiroz, Lorrayne Rithielle Rocha, Camargo, Camila Tussato Soares, Nardy, Ariane, Monteiro, Fernanda Rodrigues, do Amaral, Jônatas Bussador, Paixão, Vitória, Vaisberg, Mauro, Amirato, Gislene Rocha, dos Santos, Carlos André Freitas, Durigon, Edison Luiz, Oliveira, Danielle Bruna Leal, Aguiar, Andressa Simões, Alvares-Saraiva, Anuska Marcelino, Heller, Débora, Mantoanelli, Patricia Gabriela Viana, Siqueira, Michelle Foigel, da Silva Nali, Luiz Henrique, and Bachi, André Luis Lacerda
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- 2024
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17. O processo de adaptação para violão do Capriccio em Ré maior (SW 91.2, SW 25*) para alaúde barroco de Silvius Leopold Weiss (1687-1750)
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André Freitas Simão
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Silvius Leopold Weiss ,Capriccio ,transcrição para violão ,arranjo ,performance de música barroca ,Music and books on Music ,Music ,M1-5000 - Abstract
Este trabalho trata do estudo e processo de transcrição e adaptação para o violão da obra Capriccio (SW 91.2, SW 25*) de Silvius Leopold Weiss (1687-1750), composta originalmente para alaúde barroco. Existem três fontes primárias diferentes dessa obra que estão presentes nos manuscritos das coleções de Londres (London Weiss Ms., British Library of London) e Varsóvia (Warszawa, Biblioteka Uniwersytecka, Polska). Em 2003, a Lute Society of America publicou uma versão restaurada da obra realizada pelo alaudista Michel Cardin, que combinou essas três diferentes fontes, sendo essa edição juntamente com os manuscritos a base da transcrição para o violão aqui apresentada. A diferença de afinação e do número de cordas entre o alaúde e o violão gera, na adaptação para o violão, problemas devidos às características idiomáticas técnico-musicais presentes na obra que devem ser analisados e cujas soluções são discutidas através de exemplos musicais. No final a transcrição integral da obra é apresentada.
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- 2016
18. Comparison between the Reflux Finding Score and the Reflux Symptom Index in the Practice of Otorhinolaryngology
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Heloisa Sobreira Nunes, José Antonio Pinto, Adma Roberta Zavanela, André Freitas Cavallini, Gabriel Santos Freitas, and Fabiola Esteves Garcia
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gastroesophageal reflux disease ,videolaryngoscopy ,laryngopharyngeal reflux ,Medicine ,Otorhinolaryngology ,RF1-547 - Abstract
Abstract Introduction The Gastroesophageal Reflux Disease has a prevalence of ∼12% of the urban population in Brazil. Koufman proposed the term to designate Laryngeal Pharyngeal Reflux (LPR) symptoms, signs or tissue damage resulting from aggression of the gastrointestinal contents in the upper aerodigestive tract. Belafsky et al proposed a score that points to inflammatory laryngeal signs through videolaryngoscopic findings, the Reflux Finding Score (RFS). Moreover, in 2002, they published the Reflux Symptom Index (RSI). Objective The objective of this study is to provide a comparison between the Reflux Finding Score and the Reflux Symptom Index in the practice of Otorhinolaryngology. Methods Our study involved a total of 135 patients who visited the Ear, Nose, and Throat (ENT) clinic Núcleo de Otorrinolaringologia e Cirurgia de Cabeça e Pescoço de São Paulo between April 2014 and May 2015 with suspected LPR. We excluded nine patients and the study group was 126 patients. All patients were ranked by their RSI and RFS scores. Results The study group consisted of 126 patients (88 women and 38 men). Their main complaints were cough (40.4%), globus (21.4%), dysphonia (19.8%), throat clearing (15.8%), postnasal drip (3.17%), snoring (1.5%), dysphagia (1.5%), cacosmia (0.7%), and regurgitation (1.5%). The RSI ranges from 13 to 42 with a mean of 20.7 (SD = 6.67). The RFS ranged from 3 to 19 with a mean of 9.53 (SD = 2.64). Conclusion The RSI and RFS can easily be included in ENT routines as objective parameters, with low cost and high practicality. Based on the clinical index, the specialist can evaluate the need for further tests.
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- 2016
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19. Teaching Research Methodologies in Education: Teachers' Pedagogical Practices in Portugal
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André Freitas, João Filipe Matos, João Piedade, Vitor Duarte Teodoro, and Rosa Serradas Duarte
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Despite the several mismatches of methodological understanding between teachers and students in higher education, research methodologies in education are a relatively common pedagogical practice in most European advanced courses in education. However, only some studies have shown what pedagogical practices are mobilised by the teachers with their specific scientific conceptions. This article presents and discusses the results of an extensive research study conducted in Portugal with all the teachers involved in teaching research methodologies on master's and doctoral programmes in education. The results show the personal and professional characteristics of the teachers involved in this teaching and the type of senses, decisions, and challenges experienced when teaching research methodologies. The study identifies and characterises the research culture generated by the different pedagogical practices in this scientific field. Based on the results, we argue that the teachers' scientific conceptions and pedagogical practices may be developed by a "peer authorial construction of research understanding," aiming to provide appropriate educational experiences to students in research methodologies courses in advanced studies in education.
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- 2024
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20. Reconceptualizing Expressive Arts Education in Portugal through a Biographical Narrative Approach
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André Freitas, Fátima Pereira, and Paulo Nogueira
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biographical narrative methodology ,expressive arts education ,artistic expressivity experience ,Education - Abstract
In light of ongoing controversies concerning expressive arts education in Portuguese primary schools, the life history of one primary-school teacher who lives and works in the city of Porto (Portugal) is the starting point for problematizing this issue from the perspective of lived experiences. Data collection comprises oral reports, visual materials, and emotional accounts. Feelings were shared in a relational environment framed by ethical commitments. Through these processes, it was possible to create a narrative within the framework of a biographical narrative research approach. The main purpose was to highlight the voice of one primary-school teacher whose life history is blended with the foundations and practices of artistic expression in basic education—such as language, communication, knowledge, and lived experiences—making it an important starting point for reconceptualizing expressive arts education. The results showed that this reconceptualization can be achieved through three dimensions: seducing people, mediating places, and governing senses.
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- 2020
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21. New distribution records and notes on the habitat of Magneuptychia flavofascia Zacca & Siewert, 2014 (Lepidoptera: Nymphalidae)
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Lucas Kaminski, Rafael Dell’Erba, Eduardo Barbosa, and André Freitas
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Biology (General) ,QH301-705.5 - Abstract
The recently described butterfly Magneuptychia flavofascia was formerly known from only two localities in the Brazilian Cerrado savanna. Here, we report new distribution records, DNA barcode sequences, and information on the habitat, adult behavior and systematic position of this species.
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- 2015
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22. The 'Taygetis ypthima species group' (Lepidoptera, Nymphalidae, Satyrinae): taxonomy, variation and description of a new species
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Ricardo Siewert, Thamara Zacca, Fernando Dias, André Freitas, Olaf Mielke, and Mirna Casagrande
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Zoology ,QL1-991 - Abstract
A new species of Taygetis Hübner, [1819] (Lepidoptera, Nymphalidae, Satyrinae) from southeastern Brazil is described: Taygetis drogoni sp. n. In addition, T. servius Weymer, 1910 and T. fulginia d’Almeida, 1922 are resurrected from synonymy and a taxonomic discussion on the species T. ypthima Hübner, [1821] and T. rectifascia Weymer, 1907 is provided. A dichotomous key for the species is also provided.
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- 2013
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23. Yield mapping, soil fertility and tree gaps in an orange orchard Mapeamento da produtividade, fertilidade do solo e falhas de plantas em pomar de laranjeiras
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José Paulo Molin, André Freitas Colaço, Eduardo Fermino Carlos, and Dirceu de Mattos Junior
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Agricultura de precisão ,variabilidade espacial ,declínio ,huanglongbing (HLB) ,Precision agriculture ,spatial variability ,citrus blight ,Plant culture ,SB1-1110 - Abstract
The current high competition on Citrus industry demands from growers new management technologies for superior efficiency and sustainability. In this context, precision agriculture (PA) has developed techniques based on yield mapping and management systems that recognize field spatial variability, which contribute to increase profitability of commercial crops. Because spatial variability is often not perceived the orange orchards are still managed as uniform and adoption of PA technology on citrus farms is low. Thus, the objective of the present study was to characterize the spatial variability of three factors: fruit yield, soil fertility and occurrence of plant gaps caused by either citrus blight or huanglongbing (HLB) in a commercial Valencia orchard in Brotas, São Paulo State, Brazil. Data from volume, geographic coordinates and representative area of the bags used on harvest were recorded to generate yield points that were then interpolated to produce the yield map. Soil chemical characteristics were studied by analyzing samples collected along planting rows and inter-rows in 24 points distributed in the field. A map of density of tree gaps was produced by georeferencing individual gaps and later by counting the number of gaps within 500 m² cells. Data were submitted to statistical and geostatistical analyses. A t test was used to compare means of soil chemical characteristics between sampling regions. High variation on yield and density of tree gaps was observed from the maps. It was also demonstrated overlapping regions of high density of plant absence and low fruit yield. Soil fertility varied depending on the sampling region in the orchard. The spatial variability found on yield, soil fertility and on disease occurrence demonstrated the importance to adopt site specific nutrient management and disease control as tools to guarantee efficiency of fruit production.A atual competitividade existente no setor citrícola demanda dos produtores novas estratégias de manejo para aumento de eficiência e sustentabilidade. Nesse sentido, a agricultura de precisão (AP) tem desenvolvido técnicas baseadas no mapeamento de produtividade e sistemas de manejos que reconheçam a variabilidade espacial existente no campo, o que contribui para aumentar a lucratividade de pomares comerciais. Como a variabilidade espacial normalmente não é visualizada, os pomares ainda são manejados como uniformes, e a adoção das tecnologias de AP nas fazendas citrícolas é baixa. Dessa forma, o objetivo do trabalho foi carcaterizar a variabilidade espacial de três fatores: produtividade de frutos, fertilidade do solo e ocorrência de falhas de plantas causadas pelo declínio dos citros e pelo (HLB), em um talhão comercial de citros em Brotas-SP. Dados de volume, coordenadas geográficas e área de representação dos sacolões utilizados na colheita foram registrados para gerar pontos de produtividade, que foram interpolados para produzir o mapa de produtividade. As características químicas do solo foram estudadas por meio de análises de amostras coletadas ao longo das linhas de plantio e no centro das entrelinhas em 24 pontos distribuídos no talhão. Um mapa de densidade de falhas de plantas foi realizado por meio do georreferenciamento das falhas e da posterior contagem do número de falhas em células de 500 m². Os dados foram submetidos a análises estatísticas e geoestatísticas. Utilizou-se o teste t para comparaç��o de médias das características químicas do solo entre as regiões de amostragem. A partir dos mapas realizados, observou-se grande variação de produtividade e de densidade de falhas. Eles também mostraram manchas sobrepostas de alta densidade de falhas de plantas e baixa produtividade de frutos. A fertilidade do solo nas regiões amostradas mostrou-se significativamente diferente. A variabilidade espacial encontrada na produtividade, na fertilidade do solo e na ocorrência de doenças demonstrou a importância do manejo localizado nutricional e fitossanitário como ferramentas para garantir eficiência na produção de frutas.
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- 2012
24. Lepidoptera, Nymphalidae, Ithomiinae, Scada reckia reckia: Suggestion of recent range expansion throughout the state of Espírito Santo, SE Brazil
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Jaqueliny Canuto, Talita Nogueira, Keith Brown Jr., and André Freitas
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Biology (General) ,QH301-705.5 - Abstract
None
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- 2008
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25. Long-Term Physical Activity Mitigates Inflammaging Progression in Older Adults Amidst the COVID-19 Pandemic.
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dos Santos, Carlos André Freitas, Nardy, Ariane, Gomes, Renato Jimenez, Silva, Brenda Rodrigues, Monteiro, Fernanda Rodrigues, Rossi, Marcelo, do Amaral, Jônatas Bussador, Paixão, Vitória, Vaisberg, Mauro Walter, Amirato, Gislene Rocha, Vieira, Rodolfo P., dos Santos, Juliana de Melo Batista, Furtado, Guilherme Eustaquio, Ribeiro, Ana Paula, Colombo-Souza, Patrícia, Jacinto, Alessandro Ferrari, and Bachi, Andre Luis Lacerda
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- 2024
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26. Microcephaly-chorioretinopathy syndrome, autosomal recessive form. A case report
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Rafael Fabiano Machado Rosa, Flávia Enk, Korine Camargo, Giovanni Marco Travi, André Freitas, Rosana Cardoso Manique Rosa, Carla Graziadio, Vinicius Freitas de Mattos, and Paulo Ricardo Gazzola Zen
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Microcephaly ,Retina ,Intellectual disability ,Consanguinity ,Toxoplasmosis ,Medicine - Abstract
CONTEXT: The autosomal recessive form of microcephaly-chorioretinopathy syndrome is a rare genetic condition that is considered to be an important differential diagnosis with congenital toxoplasmosis.CASE REPORT: Our patient was a seven-year-old white boy who was initially diagnosed with congenital toxoplasmosis. However, his serological tests for congenital infections, including toxoplasmosis, were negative. He was the first child of young, healthy and consanguineous parents (fourth-degree relatives). The parents had normal head circumferences and intelligence. The patient presented microcephaly and specific abnormalities of the retina, with multiple diffuse oval areas of pigmentation and patches of chorioretinal atrophy associated with diffuse pigmentation of the fundus. Ophthalmological evaluations on the parents were normal. A computed tomography scan of the child's head showed slight dilation of lateral ventricles and basal cisterns without evidence of calcifications. We did not find any lymphedema in his hands and feet. He had postnatal growth retardation, severe mental retardation and cerebral palsy.CONCLUSIONS: The finding of chorioretinal lesions in a child with microcephaly should raise suspicions of the autosomal recessive form of microcephaly-chorioretinopathy syndrome, especially in cases with an atypical pattern of eye fundus and consanguinity. A specific diagnosis is essential for an appropriate clinical evaluation and for genetic counseling for the patients and their families.
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27. Comparative Analysis of the Culture of Pink Shrimp Farfantepenaeus brasiliensis and Pacific White Shrimp Litopenaeus vannamei in Biofloc System.
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Krummenauer, Dariano, da Silva, André Freitas, Xavier, Missileny, Foes, Geraldo Kipper, Poersch, Luís H., Cardozo, Alessandro, and Wasielesky, Wilson
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WHITELEG shrimp , *DIETARY supplements , *LOW temperatures , *WATER quality , *AQUACULTURE - Abstract
Shrimp farming in the Biofloc Technology System (BFT) is already considered an alternative to the traditional culture. The bioflocs maintain the water quality and can be used as a food supplement for shrimp. The Pacific white shrimp Litopenaeus vannamei forms the basis for most of the production in BFT. However, its culture is limited by the low temperatures. Thus, the BFT culture potential of native species, such as the pink shrimp Farfantepenaeus brasiliensis, should be considered. The present study aimed to compare the cultures of F. brasiliensis and L. vannamei in the grow-out phase in the BFT system. The experiment comprised two treatments: (FB), grown out of F. brasiliensis, and (LV), grown out of L. vannamei. The study lasted 70 days and was conducted at the Marine Station of Aquaculture at the Federal University of Rio Grande, Rio Grande do Sul State, Brazil. The stocking density was 100 shrimp/m² for both species. The shrimp were fed twice a day with commercial food. The physicochemical parameters of the water were monitored throughout the experimental period. The results showed that all physicochemical parameters of the water remained within the tolerated limits for both species. However, during the growth phase in the BFT, it was observed that the L. vannamei shrimp showed a better zootechnical performance than F. brasiliensis. The results indicate that L. vannamei has a higher capacity to catch bioflocs as supplementary food, demonstrating a better response of that species to the BFT system in the grow-out phase compared to F. brasiliensis. [ABSTRACT FROM AUTHOR]
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- 2024
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28. Teaching Research Methods Courses in Education: Towards a Research-Based Culture
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Piedade, João Filipe Matos, André Freitas, Elsa Estrela, Carla Galego, and João
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research methodologies in education ,teaching research methods ,student-centered learning approach ,pedagogical culture of research methods - Abstract
This paper aims to identify and discuss what constitutes a research-based pedagogical culture in teaching research methods courses in master’s and doctoral programs in education. The discussion draws on empirical results of a set of five focus group interviews with teachers responsible for teaching research methods courses in educational programs in higher education institutions in Portugal. Data are analyzed and interpreted within a situated learning framework that acknowledges the relevance of creating social learning spaces which accommodate the variety of students. The article closes with a characterization of what could be a research-based pedagogical culture in teaching research methods in advanced studies in education in the near future.
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- 2023
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29. Defining the role of real-world data in cancer clinical research: The position of the European Organisation for Research and Treatment of Cancer
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Robbe Saesen, Mieke Van Hemelrijck, Jan Bogaerts, Christopher M. Booth, Jan J. Cornelissen, Andre Dekker, Elizabeth A. Eisenhauer, André Freitas, Alessandro Gronchi, Miguel A. Hernán, Frank Hulstaert, Piet Ost, Petr Szturz, Helena M. Verkooijen, Michael Weller, Roger Wilson, Denis Lacombe, Winette T. van der Graaf, Hematology, and Medical Oncology
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Real-world evidence ,Cancer Research ,Oncology ,SDG 3 - Good Health and Well-being ,Cohort multiple randomised controlled trials ,Randomised controlled trials ,Trials within cohorts ,Add-on cohorts ,Real-world data ,Cancer ,Clinical research ,Pragmatic trials - Abstract
The emergence of the precision medicine paradigm in oncology has led to increasing interest in the integration of real-world data (RWD) into cancer clinical research. As sources of real-world evidence (RWE), such data could potentially help address the uncertainties that surround the adoption of novel anticancer therapies into the clinic following their investigation in clinical trials. At present, RWE-generating studies which investigate antitumour interventions seem to primarily focus on collecting and analysing observational RWD, typically forgoing the use of randomisation despite its methodological benefits. This is appropriate in situations where randomised controlled trials (RCTs) are not feasible and non-randomised RWD analyses can offer valuable insights. Nevertheless, depending on how they are designed, RCTs have the potential to produce strong and actionable RWE themselves. The choice of which methodology to employ for RWD studies should be guided by the nature of the research question they are intended to answer. Here, we attempt to define some of the questions that do not necessarily require the conduct of RCTs. Moreover, we outline the strategy of the European Organisation for Research and Treatment of Cancer (EORTC) to contribute to the generation of robust and high-quality RWE by prioritising the execution of pragmatic trials and studies set up according to the trials-within-cohorts approach. If treatment allocation cannot be left up to random chance due to practical or ethical concerns, the EORTC will consider undertaking observational RWD research based on the target trial principle. New EORTC-sponsored RCTs may also feature concurrent prospective cohorts composed of off-trial patients. ispartof: EUROPEAN JOURNAL OF CANCER vol:186 pages:52-61 ispartof: location:England status: published
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- 2023
30. A Canonical Context-Preserving Representation for Open IE: Extracting Semantically Typed Relational Tuples from Complex Sentences
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Christina Niklaus, Matthias Cetto, André Freitas, and Siegfried Handschuh
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Information Systems and Management ,Artificial Intelligence ,computer science ,Software ,Management Information Systems - Abstract
Modern systems that deal with inference in texts need automatized methods to extract meaning representations (MRs) from texts at scale. Open Information Extraction (IE) is a prominent way of extracting all potential relations from a given text in a comprehensive manner. Previous work in this area has mainly focused on the extraction of isolated relational tuples. Ignoring the cohesive nature of texts where important contextual information is spread across clauses or sentences, state-of-the- art Open IE approaches are thus prone to generating a loose arrangement of tuples that lack the expressiveness needed to infer the true meaning of complex assertions. To overcome this limitation, we present a method that allows existing Open IE systems to enrich their output with additional meta information. By leveraging the semantic hierarchy of minimal propositions generated by the discourse-aware Text Simplification (TS) approach presented in Niklaus et al. (2019), we propose a mechanism to extract semantically typed relational tuples from complex source sentences. Based on this novel type of output, we introduce a lightweight semantic representation for Open IE in the form of normalized and context-preserving relational tuples. It extends the shallow semantic representation of state-of-the-art approaches in the form of predicate-argument structures by capturing intra-sentential rhetorical structures and hierarchical relationships between the relational tuples. In that way, the semantic context of the extracted tuples is preserved, resulting in more informative and coherent predicate-argument structures which are easier to interpret. In addition, in a comparative analysis, we show that the semantic hierarchy of minimal propositions benefits Open IE approaches in a second dimension: the canonical structure of the simplified sentences is easier to process and analyze, and thus facilitates the extraction of relational tuples, resulting in an improved precision (up to 32%) and recall (up to 30%) of the extracted relations on a large benchmark corpus.
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- 2023
31. Impact of Exercise Interventions on Sustained Brain Health Outcomes in Frail Older Individuals: A Comprehensive Review of Systematic Reviews.
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Furtado, Guilherme Eustáquio, Reis, Anne Sulivan Lopes da Silva, Braga-Pereira, Ricardo, Caldo-Silva, Adriana, Teques, Pedro, Sampaio, António Rodrigues, Santos, Carlos André Freitas dos, Bachi, André Luís Lacerda, Campos, Francisco, Borges, Grasiely Faccin, and Brito-Costa, Sónia
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BRAIN physiology ,EVALUATION of medical care ,WELL-being ,BIOMARKERS ,NEUROENDOCRINE system ,ACTIVITIES of daily living ,DISABILITY evaluation ,EXERCISE ,DEMENTIA ,MUSCLE strength ,QUALITY of life ,EXERCISE therapy - Abstract
Several systematic review studies highlight exercise's positive impact on brain health outcomes for frail individuals. This study adopts a Comprehensive Review of reviews (CRs) approach to amalgamate data from existing reviews, focusing on exercise's influence on brain health outcomes in older frail and pre-frail adults. The methodology involves a thorough search of Portuguese, Spanish, and English-indexed databases (i.e., Ebsco Health, Scielo, ERIC, LILACS, Medline, Web of Science, SportDiscus) from 1990 to 2022, with the AMSTAR-2 tool assessing evidence robustness. The search terms "physical exercise", "elderly frail", and "systematic review" were employed. Results: Out of 12 systematically reviewed studies, four presented high-quality (with metanalyses), while eight exhibit critically low quality. Positive trends emerge in specific cognitive and neuromotor aspects, yet challenges persist in psychosocial domains, complex cognitive tasks, and ADL outcomes. This study yields reasonable and promising evidence regarding exercise's influence on quality of life and depression in frail older individuals. However, the impact on biochemical markers remains inconclusive, emphasizing the need for standardized methodologies. Conclusions: The findings highlight the importance of acknowledging methodological nuances for clinicians and policymakers when translating these results into impactful interventions for aging populations. This emphasizes the necessity for a comprehensive and customized approach to exercise interventions aimed at fostering the sustainability of overall well-being in older individuals, aligning with United Nations Sustainable Development Goal 3. [ABSTRACT FROM AUTHOR]
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- 2023
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32. Older Adults Who Maintained a Regular Physical Exercise Routine before the Pandemic Show Better Immune Response to Vaccination for COVID-19
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Brenda Rodrigues Silva, Fernanda Rodrigues Monteiro, Kizzy Cezário, Jônatas Bussador do Amaral, Vitória Paixão, Ewin Barbosa Almeida, Carlos André Freitas dos Santos, Gislene Rocha Amirato, Danielle Bruna Leal Oliveira, Edison Luiz Durigon, Andressa Simões Aguiar, Rodolfo P. Vieira, Juliana de Melo Batista dos Santos, Guilherme Eustáquio Furtado, Carolina Nunes França, Marina Tiemi Shio, and André Luis Lacerda Bachi
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immunosenescence ,active lifestyle ,Health, Toxicology and Mutagenesis ,vaccine ,antibody ,Public Health, Environmental and Occupational Health ,COVID-19 ,lymphocyte - Abstract
Background: In this study, we aimed to investigate the specific-antibody response to the COVID-19 vaccination and the immunophenotyping of T cells in older adults who were engaged or not in an exercise training program before the pandemic. Methods: Ninety-three aged individuals (aged between 60 and 85 years) were separated into 3 groups: practitioners of physical exercise vaccinated with CoronaVac (PE-Co, n = 46), or vaccinated with ChadOx-1 (PE-Ch, n = 23), and non-practitioners vaccinated with ChadOx-1 (NPE-Ch, n = 24). Blood samples were collected before (pre) and 30 days after vaccination with the second vaccine dose. Results. Higher IgG levels and immunogenicity were found in the PE-Ch and NPE-Ch groups, whereas increased IgA levels were found only in the PE-Ch group post-vaccination. The PE-Co group showed a positive correlation between the IgA and IgG values, and lower IgG levels post-vaccination were associated with age. Significant alterations in the percentage of naive (CD28+CD57-), double-positive (CD28+CD57+), and senescent (CD28-CD57+) CD4+ T and CD8+ T cells were found post-vaccination, particularly in the PE-Ch group. Conclusions: The volunteers vaccinated with the ChadOx-1 presented not only a better antibody response but also a significant modulation in the percentage of T cell profiles, mainly in the previously exercised group.
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- 2023
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33. GENETIC PARAMETERS AND DIVERSITY, AND CORRELATIONS IN ONION STRAINS
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VANESSA CLÁUDIA VASCONCELOS SEGUNDO, RENATO INNECCO, JOELSON ANDRÉ FREITAS, EVELINE NOGUEIRA LIMA, ANA PAULA OLIVEIRA NOGUEIRA, and JOSÉ MAGNO QUEIROZ LUZ
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Heritability ,Seleção indireta ,Allium cepa L. Recursos genéticos. Herdabilidade. Variabilidade genética. Seleção indireta ,Allium cepa L ,Recursos genéticos ,Genetic variability ,Indirect selection ,Variabilidade genética ,General Agricultural and Biological Sciences ,Herdabilidade ,Genetic resources ,Allium cepa L. Genetic resources. Heritability. Genetic variability. Indirect selection - Abstract
Plant breeding programs have been investing in the development of high commercial standard onions; thus, they depend on the genetic resources available for obtaining commercial hybrids. The objective of this study was to evaluate genetic parameters and diversity, and phenotypic and genotypic correlations of characters related to onion production. The experiment was conducted in Uberlândia, Minas Gerais, Brazil. Fifty-three onion strains were evaluated, and a randomized block design was used. The number of plant and bulb characteristics evaluated was 13. The statistical analyses were performed using Genes and R software. A genetic variability among the genotypes was found for most of the characters at 1% level of significance in the F test. The heritability of most characters presented moderate to high values (≥ 70%) and high CVg/CVe ratio (≥ 1). The UPGMA method separated the genotypes into 20 groups, while the Tocher method separated them into 19 groups. The groups that stood out were V, XIV, XV, XV, XVI, XVII, XVIII, XIX, and XX. The results of t-test showed six significant phenotypic correlations with low to moderate degree of association, and the genotypic correlations, in most cases, were higher than the phenotypic ones and showed the same sign. From the genetic parameters studied, the possibility of gains in the selection is high. The separation of groups of divergent genitors was possible due to the wide genetic variability for the studied characters. Moreover, the phenotypic and genotypic correlations showed that indirect selection is not feasible. RESUMO Os programas de melhoramento vegetal têm investido no desenvolvimento de cebolas com alto padrão comercial e para tal dependem dos recursos genéticos disponíveis para a obtenção de híbridos comerciais. O objetivo deste estudo foi avaliar parâmetros genéticos, diversidade genética e as correlações fenotípicas e genotípicas de caracteres relacionados à produção de cebola. O experimento foi realizado em Uberlândia - Minas Gerais, Brasil. Foram avaliadas 53 linhagens de cebola. Foi utilizado o delineamento em blocos ao acaso. Foram avaliadas 13 características de planta e bulbo. As análises estatísticas foram realizadas no programa Genes e R. Observou-se a existência de variabilidade genética entre os genótipos para a maioria dos caracteres ao nível de 1% pelo teste F. A herdabilidade da maioria dos caracteres apresentou valores moderados a altos (≥ 70%) e relação CVg/CVe alta (≥1). O método UPGMA possibilitou separar os genótipos em 20 grupos e de forma semelhante o método de Tocher separou os mesmos em 19 grupos. Os grupos que mais se destacaram foram V, XIV, XV, XVI, XVII, XVIII, XIX e XX. Houve seis correlações fenotípicas significativas pelo teste t com grau de associação baixo a moderado, e as correlações genotípicas, em sua maioria, mostraram-se superiores às fenotípicas e apresentaram o mesmo sinal. A partir dos parâmetros genéticos estudados existe alta possibilidade de ganhos na seleção. Há ampla variabilidade genética para os caracteres estudados o que permitiu a separação de grupos de genitores divergentes. Adicionalmente, as correlações fenotípicas e genotípicas mostraram inviabilidade para seleção indireta.
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- 2022
34. An International Comparison of Presentation, Outcomes and CORONET Predictive Score Performance in Patients with Cancer Presenting with COVID-19 across Different Pandemic Waves
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Oskar, Wysocki, Cong, Zhou, Jacobo, Rogado, Prerana, Huddar, Rohan, Shotton, Ann, Tivey, Laurence, Albiges, Angelos, Angelakas, Dirk, Arnold, Theingi, Aung, Kathryn, Banfill, Mark, Baxter, Fabrice, Barlesi, Arnaud, Bayle, Benjamin, Besse, Talvinder, Bhogal, Hayley, Boyce, Fiona, Britton, Antonio, Calles, Luis, Castelo-Branco, Ellen, Copson, Adina, Croitoru, Sourbha S, Dani, Elena, Dickens, Leonie, Eastlake, Paul, Fitzpatrick, Stephanie, Foulon, Henrik, Frederiksen, Sarju, Ganatra, Spyridon, Gennatas, Andreas, Glenthøj, Fabio, Gomes, Donna M, Graham, Christina, Hague, Kevin, Harrington, Michelle, Harrison, Laura, Horsley, Richard, Hoskins, Zoe, Hudson, Lasse H, Jakobsen, Nalinie, Joharatnam-Hogan, Sam, Khan, Umair T, Khan, Khurum, Khan, Alexandra, Lewis, Christophe, Massard, Alec, Maynard, Hayley, McKenzie, Olivier, Michielin, Anne C, Mosenthal, Berta, Obispo, Carlo, Palmieri, Rushin, Patel, George, Pentheroudakis, Solange, Peters, Kimberly, Rieger-Christ, Timothy, Robinson, Emanuela, Romano, Michael, Rowe, Marina, Sekacheva, Roseleen, Sheehan, Alexander, Stockdale, Anne, Thomas, Lance, Turtle, David, Viñal, Jamie, Weaver, Sophie, Williams, Caroline, Wilson, Caroline, Dive, Donal, Landers, Timothy, Cooksley, André, Freitas, Anne C, Armstrong, Rebecca J, Lee, On Behalf Of The Esmo Co-Care, Institut Gustave Roussy (IGR), Oncologie gynécologique, Département de médecine oncologique [Gustave Roussy], Institut Gustave Roussy (IGR)-Institut Gustave Roussy (IGR), Physikalisch-Technische Bundesanstalt [Braunschweig] (PTB), Centre de Recherche en Cancérologie de Marseille (CRCM), Aix Marseille Université (AMU)-Institut Paoli-Calmettes, Fédération nationale des Centres de lutte contre le Cancer (FNCLCC)-Fédération nationale des Centres de lutte contre le Cancer (FNCLCC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Cancer Research and Personalized Medicine - CARPEM [Paris], Hôpital Européen Georges Pompidou [APHP] (HEGP), Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Hôpitaux Universitaires Paris Ouest - Hôpitaux Universitaires Île de France Ouest (HUPO)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Hôpitaux Universitaires Paris Ouest - Hôpitaux Universitaires Île de France Ouest (HUPO)-Hôpital Cochin [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Université Paris Descartes - Paris 5 (UPD5)-Institut National de la Santé et de la Recherche Médicale (INSERM)-CHU Necker - Enfants Malades [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Genetics, University of Southampton, Centre de recherche en épidémiologie et santé des populations (CESP), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Hôpital Paul Brousse-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris-Saclay, Hematology, Odense University Hospital, Department of Clinical Microbiology [Rigshospitalet], Rigshospitalet [Copenhagen], Copenhagen University Hospital-Copenhagen University Hospital, University of Manchester [Manchester], Lausanne University Hospital, University of Liverpool, Department of Medical Oncology, Ioannina University Hospital, Immunité et cancer (U932), Institut Curie [Paris]-Institut National de la Santé et de la Recherche Médicale (INSERM), Clinical and Experimental Pharmacology Group, Paterson Institute for Cancer Research, University of Manchester, Universidade Estadual de Campinas = University of Campinas (UNICAMP), Cancer Research UK Department of Medical Oncology, and Christie Hospital NHS Foundation Trust
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CORONET ,Cancer Research ,Oncology ,Omicron ,[SDV]Life Sciences [q-bio] ,cancer ,COVID-19 ,outcomes ,vaccination - Abstract
International audience; Simple Summary There have been huge improvements in both vaccination and the management of COVID-19 in patients with cancer. In addition, different variants may be associated with different presentations. Therefore, we examined whether indicators of the severity of COVID-19 in patients with cancer who present to hospital varied during different waves of the pandemic and we showed that these indicators remained predictive. We validated that the COVID-19 Risk in Oncology Evaluation Tool (CORONET), which predicts the severity of COVID-19 in cancer patients presenting to hospital, performed well in all waves. In addition, we examined patient outcomes and the factors that influence them and found that there was increased vaccination uptake and steroid use for patients requiring oxygen in later waves, which may be associated with improvements in outcome. Patients with cancer have been shown to have increased risk of COVID-19 severity. We previously built and validated the COVID-19 Risk in Oncology Evaluation Tool (CORONET) to predict the likely severity of COVID-19 in patients with active cancer who present to hospital. We assessed the differences in presentation and outcomes of patients with cancer and COVID-19, depending on the wave of the pandemic. We examined differences in features at presentation and outcomes in patients worldwide, depending on the waves of the pandemic: wave 1 D614G (n = 1430), wave 2 Alpha (n = 475), and wave 4 Omicron variant (n = 63, UK and Spain only). The performance of CORONET was evaluated on 258, 48, and 54 patients for each wave, respectively. We found that mortality rates were reduced in subsequent waves. The majority of patients were vaccinated in wave 4, and 94% were treated with steroids if they required oxygen. The stages of cancer and the median ages of patients significantly differed, but features associated with worse COVID-19 outcomes remained predictive and did not differ between waves. The CORONET tool performed well in all waves, with scores in an area under the curve (AUC) of >0.72. We concluded that patients with cancer who present to hospital with COVID-19 have similar features of severity, which remain discriminatory despite differences in variants and vaccination status. Survival improved following the first wave of the pandemic, which may be associated with vaccination and the increased steroid use in those patients requiring oxygen. The CORONET model demonstrated good performance, independent of the SARS-CoV-2 variants.
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- 2022
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35. Wave comparisons of clinical characteristics and outcomes of COVID-19 admissions - Exploring the impact of treatment and strain dynamics
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Robert Livingstone, Hannah Burke, André Freitas, Michael Celinski, Hang Phan, Florina Borca, Paul A. Fitzpatrick, Oskar Wysocki, Anna Freeman, Paul O'Regan, Ahilanadan Dushianthan, Donal Landers, James Batchelor, Tom Wilkinson, and Alastair Watson
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medicine.medical_specialty ,COVID-19 variants ,Coronavirus disease 2019 (COVID-19) ,Psychological intervention ,Article ,Dexamethasone ,law.invention ,Odds ,law ,Virology ,Internal medicine ,medicine ,Humans ,Hospital patients ,Hospitals, Teaching ,COVID-19 waves ,Manchester Cancer Research Centre ,business.industry ,SARS-CoV-2 ,ResearchInstitutes_Networks_Beacons/mcrc ,COVID-19 ,Retrospective cohort study ,Intensive care unit ,United Kingdom ,COVID-19 Drug Treatment ,Hospitalization ,Intensive Care Units ,Infectious Diseases ,Cohort ,business ,medicine.drug - Abstract
OBJECTIVES: Dexamethasone has now been incorporated into the standard of care for COVID-19 hospital patients. However, larger intensive care unit studies have failed to show discernible improvements in mortality in the recent wave. We aimed to investigate the impacts of these factors on disease outcomes in a UK hospital study.METHODS: This retrospective observational study reports patient characteristics, interventions and outcomes in COVID-19 patients from a UK teaching hospital; cohort 1, pre 16th June-2020 (pre-dexamethasone); cohort 2, 17th June to 30th November-2020 (post-dexamethasone, pre-VOC 202,012/01 as dominant strain); cohort 3, 1st December-2020 to 3rd March-2021 (during establishment of VOC202012/01 as the dominant strain).RESULTS: Dexamethasone treatment was more common in cohorts 2 and 3 (42.7% and 51.6%) compared with cohort 1 (2.5%). After adjusting for risk, odds of death within 28 days were 2-fold lower in cohort 2 vs 1 (OR:0.47,[0.27,0.79],p = 0.006). Mortality was higher cohort 3 vs 2 (20% vs 14%); but not significantly different to cohort 1 (OR: 0.86,[0.64, 1.15],p = 0.308).CONCLUSIONS: The real world finding of lower mortality following dexamethasone supports the published trial evidence and highlights ongoing need for research with introduction of new treatments and ongoing concern over new COVID-19 variants.
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- 2022
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36. What is SemEval evaluating? A Systematic Analysis of Evaluation Campaigns in NLP
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Oskar Wysocki, Malina Florea, Dónal Landers, and André Freitas
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FOS: Computer and information sciences ,Artificial Intelligence (cs.AI) ,Computer Science - Computation and Language ,Computer Science - Artificial Intelligence ,Computation and Language (cs.CL) - Abstract
SemEval is the primary venue in the NLP community for the proposal of new challenges and for the systematic empirical evaluation of NLP systems. This paper provides a systematic quantitative analysis of SemEval aiming to evidence the patterns of the contributions behind SemEval. By understanding the distribution of task types, metrics, architectures, participation and citations over time we aim to answer the question on what is being evaluated by SemEval., 12 pages, 6 figures
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- 2021
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37. A model to analyze as-applied reports from variable rate applications
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Colaço, André Freitas, de Andrade Rosa, Hugo José, and Molin, José Paulo
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- 2014
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38. Older Adults Who Maintained a Regular Physical Exercise Routine before the Pandemic Show Better Immune Response to Vaccination for COVID-19.
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Silva, Brenda Rodrigues, Monteiro, Fernanda Rodrigues, Cezário, Kizzy, Amaral, Jônatas Bussador do, Paixão, Vitória, Almeida, Ewin Barbosa, Santos, Carlos André Freitas dos, Amirato, Gislene Rocha, Oliveira, Danielle Bruna Leal, Durigon, Edison Luiz, Aguiar, Andressa Simões, Vieira, Rodolfo P., Santos, Juliana de Melo Batista dos, Furtado, Guilherme Eustáquio, França, Carolina Nunes, Shio, Marina Tiemi, and Bachi, André Luis Lacerda
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- 2023
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39. Does My Representation Capture X? Probe-Ably
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Mokanarangan Thayaparan, Deborah Ferreira, André Freitas, Julia Rozanova, and Marco Valentino
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FOS: Computer and information sciences ,Computer Science - Machine Learning ,Computer Science - Computation and Language ,Process (engineering) ,business.industry ,Computer science ,Computer Science - Artificial Intelligence ,ComputingMethodologies_MISCELLANEOUS ,Machine learning ,computer.software_genre ,Diagnostic classification ,Machine Learning (cs.LG) ,Set (abstract data type) ,Artificial Intelligence (cs.AI) ,Line (geometry) ,Artificial intelligence ,Representation (mathematics) ,business ,Computation and Language (cs.CL) ,computer - Abstract
Probing (or diagnostic classification) has become a popular strategy for investigating whether a given set of intermediate features is present in the representations of neural models. Probing studies may have misleading results, but various recent works have suggested more reliable methodologies that compensate for the possible pitfalls of probing. However, these best practices are numerous and fast-evolving. To simplify the process of running a set of probing experiments in line with suggested methodologies, we introduce Probe-Ably: an extendable probing framework which supports and automates the application of probing methods to the user's inputs., ACL 2021 (System Demonstrations)
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- 2021
40. What's Your Value of Travel Time? Collecting Traveler-Centered Mobility Data via Crowdsourcing
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Cristian Consonni, Silvia Basile, Matteo Manca, Ludovico Boratto, André Freitas, Tatiana Kovacikova, Ghadir Pourhashem, and Yannick Cornet
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FOS: Computer and information sciences ,Computer Science - Computers and Society ,Computers and Society (cs.CY) ,Computer Science - Human-Computer Interaction ,Human-Computer Interaction (cs.HC) - Abstract
Mobility and transport, by their nature, involve crowds and require the coordination of multiple stakeholders - such as policy-makers, planners, transport operators, and the travelers themselves. However, traditional approaches have been focused on time savings, proposing to users solutions that include the shortest or fastest paths. We argue that this approach towards travel time value is not centered on a traveler's perspective. To date, very few works have mined data from crowds of travelers to test the efficacy and efficiency of novel mobility paradigms. In this paper, we build upon a different paradigm of worthwhile time in which travelers can use their travel time for other activities; we present a new dataset, which contains data about travelers and their journeys, collected from a dedicated mobile application. Each trip contains multi-faceted information: from the transport mode, through its evaluation, to the positive and negative experience factors. To showcase this new dataset's potential, we also present a use case, which compares corresponding trip legs with different transport modes, studying experience factors that negatively impact users using cycling and public transport as alternatives to cars. We conclude by discussing other application domains and research opportunities enabled by the dataset., 10 pages, 1 figure, LaTeX. Final camera-ready version accepted at the 15th International AAAI Conference on Web and Social Media (ICWSM 2021) - 7-11 June 2021
- Published
- 2021
41. Microeconomic foundations of decentralised organisations
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Mauricio Jacobo-Romero and André Freitas
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FOS: Computer and information sciences ,J.1 ,J.4 ,Computer science ,Econometrics (econ.EM) ,Distribution (economics) ,K.4.3 ,ComputerApplications_COMPUTERSINOTHERSYSTEMS ,02 engineering and technology ,Collective action ,Computational Engineering, Finance, and Science (cs.CE) ,FOS: Economics and business ,Computer Science - Computers and Society ,decentralised organisations ,020204 information systems ,Computers and Society (cs.CY) ,0202 electrical engineering, electronic engineering, information engineering ,Computer Science - Computational Engineering, Finance, and Science ,distributed ledgers ,Industrial organization ,Economics - Econometrics ,Structure (mathematical logic) ,Transaction cost ,business.industry ,Public sector ,020207 software engineering ,artificial intelligence ,microeconomics ,Coase theorem ,Fundamental change ,business ,Mechanism (sociology) - Abstract
In this article, we analyse how decentralised digital infrastructures can provide a fundamental change in the structure and dynamics of organisations. The works of R.H.Coase and M. Olson, on the nature of the firm and the logic of collective action, respectively, are revisited under the light of these emerging new digital foundations. We also analyse how these technologies can affect the fundamental assumptions on the role of organisations (either private or public) as mechanisms for the coordination of labour. We propose that these technologies can fundamentally affect: (i) the distribution of rewards within an organisation and (ii) the structure of its transaction costs. These changes bring the potential for addressing some of the trade-offs between the private and public sectors., 9 pages, 7 figures, pre-final version, submitted to conference
- Published
- 2021
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- View/download PDF
42. Longitudinal characterisation of haematological and biochemical parameters in cancer patients prior to and during COVID-19 reveals features associated with outcome
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P. Huddar, A. Angelakas, Michelle Harrison, G. Brearton, Umair T Khan, S. Khan, T. Robinson, C. Wilson, Oskar Wysocki, K. Banfill, Alec Maynard, C. Hague, Daniel H. Palmer, Mark Baxter, Tim Cooksley, Anne Thomas, J. Tweedy, Carlo Palmieri, André Freitas, C. Dive, H. Boyce, Simon G. Williams, C. Zhou, Anne C Armstrong, Alexander J. Stockdale, T. Aung, Z. Hudson, Ellen Copson, L. Eastlake, M. Rowe, E. Dickens, F. Gomes, T. Bhogal, Jamie M Weaver, L. Horsley, A. Tivey, Rebecca Lee, Rohan Shotton, H. McKenzie, and R. Sheehan
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Cancer Research ,medicine.medical_specialty ,neutrophils/metabolism ,Lymphocyte ,COVID-19/prevention & control ,neoplasms/blood ,Logistic regression ,chemistry.chemical_compound ,C-Reactive Protein/analysis ,male ,Internal medicine ,Lactate dehydrogenase ,L-Lactate Dehydrogenase/metabolism ,middle aged ,medicine ,cancer ,longitudinal studies ,humans ,lymphocyte count ,Original Research ,Aged, 80 and over ,Manchester Cancer Research Centre ,business.industry ,SARS-CoV-2 ,SARS-CoV-2/isolation & purification ,adult ,ResearchInstitutes_Networks_Beacons/mcrc ,Albumin ,Cancer ,COVID-19 ,Outcome Assessment, Health Care/methods ,platelet count ,medicine.disease ,United Kingdom ,Exact test ,aged ,medicine.anatomical_structure ,female ,Oncology ,chemistry ,Cohort ,Mann–Whitney U test ,young adult ,lymphocytes/metabolism ,business ,logistic models - Abstract
Background Cancer patients are at increased risk of death from severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Cancer and its treatment affect many haematological and biochemical parameters, therefore we analysed these prior to and during coronavirus disease 2019 (COVID-19) and correlated them with outcome. Patients and methods Consecutive patients with cancer testing positive for SARS-CoV-2 in centres throughout the United Kingdom were identified and entered into a database following local governance approval. Clinical and longitudinal laboratory data were extracted from patient records. Data were analysed using Mann–Whitney U test, Fisher's exact test, Wilcoxon signed rank test, logistic regression, or linear regression for outcomes. Hierarchical clustering of heatmaps was performed using Ward's method. Results In total, 302 patients were included in three cohorts: Manchester (n = 67), Liverpool (n = 62), and UK (n = 173). In the entire cohort (N = 302), median age was 69 (range 19-93 years), including 163 males and 139 females; of these, 216 were diagnosed with a solid tumour and 86 with a haematological cancer. Preinfection lymphopaenia, neutropaenia and lactate dehydrogenase (LDH) were not associated with oxygen requirement (O2) or death. Lymphocyte count (P < 0.001), platelet count (P = 0.03), LDH (P < 0.0001) and albumin (P < 0.0001) significantly changed from preinfection to during infection. High rather than low neutrophils at day 0 (P = 0.007), higher maximal neutrophils during COVID-19 (P = 0.026) and higher neutrophil-to-lymphocyte ratio (NLR; P = 0.01) were associated with death. In multivariable analysis, age (P = 0.002), haematological cancer (P = 0.034), C-reactive protein (P = 0.004), NLR (P = 0.036) and albumin (P = 0.02) at day 0 were significant predictors of death. In the Manchester/Liverpool cohort 30 patients have restarted therapy following COVID-19, with no additional complications requiring readmission. Conclusion Preinfection biochemical/haematological parameters were not associated with worse outcome in cancer patients. Restarting treatment following COVID-19 was not associated with additional complications. Neutropaenia due to cancer/treatment is not associated with COVID-19 mortality. Cancer therapy, particularly in patients with solid tumours, need not be delayed or omitted due to concerns that treatment itself increases COVID-19 severity., Highlights • Pre-infection haematological/biochemical characteristics are not associated with COVID-19 severity. • Significant haematological/biochemical changes occur upon infection with heterogeneity in response observed. • High not low neutrophils were associated with oxygen requirement and COVID-19 mortality – GCSF should be used with caution. Age, haematological cancer, high neutrophil:lymphocyte ratio, CRP and low albumin were significant predictors of death in multivariable analysis. No significant complications requiring readmission were seen upon restart of cancer therapy following diagnosis of COVID-19.
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- 2021
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43. Measuring diagram quality through semiotic morphism
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André Freitas and Guy Clarke Marshall
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Linguistics and Language ,Literature and Literary Theory ,Computer science ,business.industry ,Diagram (category theory) ,media_common.quotation_subject ,020207 software engineering ,Usability ,02 engineering and technology ,Language and Linguistics ,Algebra ,Morphism ,0202 electrical engineering, electronic engineering, information engineering ,Semiotics ,020201 artificial intelligence & image processing ,Quality (business) ,business ,media_common - Abstract
This paper outlines a method to assess the effectiveness of diagrams, from semiotic foundations. In doing so, we explore the Peircian notion of signification, as applied to diagrammatic representations. We review a history of diagrams, with particular emphasis on schematics used for representing systems, and uncover the neglect of semiotic analysis of diagrammatic representations. Through application of category theory to the Peircian triadic model, we propose a set of quantitative quality measures for diagrams, and a framework for their assessment, based on the properties of their encoding, pragmatic and perceptual morphisms. These measures include diagram complexity, utility, aesthetics and expert assessment of semiotic content, together with qualitative feedback. We consider the diagrams as an aid to cognitive processes, rather than a purely communication media. This utility-focused perspective on diagram quality dimensions allows for fresh insights into the creation of effective diagrams.
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- 2021
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44. Older Women Who Practiced Physical Exercises before the COVID-19 Pandemic Present Metabolic Alterations and Worsened Functional Physical Capacity after One Year of Social Isolation.
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Cezário, Kizzy, Santos, Carlos André Freitas dos, Filho, Clineu de Mello Almada, Amirato, Gislene Rocha, Paixão, Vitória da, Almeida, Ewin Barbosa, Amaral, Jônatas Bussador do, Caldo-Silva, Adriana, Pimenta, Nuno, Sampaio, António Rodrigues, Teques, Pedro, Rodrigues, Fernanda Monteiro, França, Carolina Nunes, and Bachi, André Luis Lacerda
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PROTEINS ,TRIGLYCERIDES ,GERIATRIC assessment ,BASAL metabolism ,SOCIAL isolation ,EXERCISE ,BODY movement ,WOMEN'S health ,LONGITUDINAL method ,CREATININE ,LIPIDS - Abstract
Background: Because the consequences of the lifestyle changes in older adults associated with the social isolation imposed in response to the COVID-19 pandemic are not fully understood, here, we investigated the effects of one year of social isolation imposed by COVID-19 on the metabolic parameters and functional physical capacity of older women who regularly practiced physical exercises before the pandemic. Methods: Systemic lipid and protein profiles, estimated creatinine clearance (ECC), and functional physical capacity (FPC) were assessed before (January-February 2020) and 12 months after social isolation in 30 older women (mean age 73.77 ± 6.22) who were engaged in a combined-exercise training program for at least 3 years before the COVID-19 pandemic. Results: In this group, we observed increased plasma levels of triglycerides and creatinine, an increase in the time necessary to perform gait speed and time-up-and-go tests, and reduced muscle strength assessed by the handgrip test and ECC post-COVID-19 pandemic relative to values recorded pre-pandemic. In addition, we observed significant correlations (both negative and positive) between anthropometric, some metabolic parameters, and physical tests. Conclusion: One year of interruption of physical exercise practice imposed in response to the COVID-19 pandemic significantly altered some systemic metabolic parameters and worsened ECC and FPC in older women. [ABSTRACT FROM AUTHOR]
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- 2022
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45. Reconceptualizing Expressive Arts Education in Portugal through a Biographical Narrative Approach
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Paulo Nogueira, André Freitas, Fátima Pereira, and Faculdade de Psicologia e de Ciências da Educação
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Public Administration ,media_common.quotation_subject ,Physical Therapy, Sports Therapy and Rehabilitation ,The arts ,Visual arts education ,Education ,Narrative inquiry ,0504 sociology ,biographical narrative methodology ,Developmental and Educational Psychology ,Computer Science (miscellaneous) ,Narrative ,Sociology ,media_common ,artistic expressivity experience ,05 social sciences ,Perspective (graphical) ,050401 social sciences methods ,050301 education ,language.human_language ,Computer Science Applications ,Expression (architecture) ,Feeling ,expressive arts education ,Aesthetics ,language ,Portuguese ,lcsh:L ,0503 education ,lcsh:Education - Abstract
In light of ongoing controversies concerning expressive arts education in Portuguese primary schools, the life history of one primary-school teacher who lives and works in the city of Porto (Portugal) is the starting point for problematizing this issue from the perspective of lived experiences. Data collection comprises oral reports, visual materials, and emotional accounts. Feelings were shared in a relational environment framed by ethical commitments. Through these processes, it was possible to create a narrative within the framework of a biographical narrative research approach. The main purpose was to highlight the voice of one primary-school teacher whose life history is blended with the foundations and practices of artistic expression in basic education&mdash, such as language, communication, knowledge, and lived experiences&mdash, making it an important starting point for reconceptualizing expressive arts education. The results showed that this reconceptualization can be achieved through three dimensions: seducing people, mediating places, and governing senses.
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- 2020
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46. SKG4J 2020: 1st International Workshop on Semantic and Knowledge Graph Advances for Journalism
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Tareq Al-Moslmi, Davide Ceolin, Abdullatif Abolohom, Raphaël Troncy, André Freitas, and Centrum Wiskunde & Informatica, Amsterdam (CWI), The Netherlands
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business.industry ,Computer science ,Interface (Java) ,Data management ,semantic representation ,computer.software_genre ,World Wide Web ,Information extraction ,Knowledge graph ,Knowledge extraction ,Journalism ,Semantic representation ,information extraction ,business ,journalistic knowledge graphs ,computer - Abstract
SKG4J targeted contributions at the interface between Artificial Intelligence, Data Management and its implications for journalistic practice. The first version of the workshop accepted three submissions with topics emphasising the complementary requirements for delivering realistic journalistic knowledge extraction/management platforms.
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- 2020
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47. Correlation between molten vanadium salts and the structural degradation of HK-type steel superheater tubes
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de Carvalho Nunes, Frederico, de Almeida, Luiz Henrique, and Ribeiro, André Freitas
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- 2006
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48. Application of light detection and ranging and ultrasonic sensors to high-throughput phenotyping and precision horticulture: current status and challenges
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Alexandre Escolà, Joan R. Rosell-Polo, José Paulo Molin, and André Freitas Colaço
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0106 biological sciences ,Plant Science ,Review Article ,Horticulture ,Biology ,01 natural sciences ,Biochemistry ,Data acquisition ,lcsh:Botany ,Genetics ,Applied research ,Digital elevation model ,lcsh:QH301-705.5 ,Data processing ,Ranging ,04 agricultural and veterinary sciences ,TECNOLOGIA LIDAR ,lcsh:QK1-989 ,Tree (data structure) ,Lidar ,lcsh:Biology (General) ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Scale (map) ,010606 plant biology & botany ,Biotechnology - Abstract
Ultrasonic and light detection and ranging (LiDAR) sensors have been some of the most deeply investigated sensing technologies within the scope of digital horticulture. They can accurately estimate geometrical and structural parameters of the tree canopies providing input information for high-throughput phenotyping and precision horticulture. A review was conducted in order to describe how these technologies evolved and identify the main investigated topics, applications, and key points for future investigations in horticulture science. Most research efforts have been focused on the development of data acquisition systems, data processing, and high-resolution 3D modeling to derive structural tree parameters such as canopy volume and leaf area. Reported applications of such sensors for precision horticulture were restricted to real-time variable-rate solutions where ultrasonic or LiDAR sensors were tested to adjust plant protection product or fertilizer dose rates according to the tree volume variability. More studies exploring other applications in site-specific management are encouraged; some that integrates canopy sensing data with other sources of information collected at the within-grove scale (e.g., digital elevation models, soil type maps, historical yield maps, etc.). Highly accurate 3D tree models derived from LiDAR scanning demonstrate their great potential for tree phenotyping. However, the technology has not been widely adopted by researchers to evaluate the performance of new plant varieties or the outcomes from different management practices. Commercial solutions for tree scanning of whole groves, orchards, and nurseries would promote such adoption and facilitate more applied research in plant phenotyping and precision horticulture., Remote sensing: Shining light on tree productivity LIDAR should be combined with other information from groves or orchards to gain a better understanding of the factors driving tree performance and optimize it. LIDAR is a remote sensing method which ‘maps’ surfaces by shining light at them and measuring how long the light takes to return. Within horticulture, it’s main use has been in estimating canopy volume to optimize spraying of eg. fruit trees, or fertilizer distribution. In this review, André Colaço at the University of São Paulo in Brazil and colleagues describe the evolution of this technology and its broader applications. They suggest that by combining LIDAR with other information, such as soil electrical conductivity and fertility; or historic yield, disease and pest occurrence, growers could fine-tune crop production. LIDAR could also be used to evaluate the performance of new plant varieties.
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- 2018
49. Identifying Supporting Facts for Multi-hop Question Answering with Document Graph Networks
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Marco Valentino, Viktor Schlegel, Mokanarangan Thayaparan, and André Freitas
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FOS: Computer and information sciences ,Computer Science - Machine Learning ,Information retrieval ,Computer Science - Computation and Language ,Computer science ,Computer Science - Artificial Intelligence ,Complex question ,02 engineering and technology ,010501 environmental sciences ,01 natural sciences ,Machine Learning (cs.LG) ,Computer Science - Information Retrieval ,Artificial Intelligence (cs.AI) ,Reading comprehension ,Message passing architecture ,0202 electrical engineering, electronic engineering, information engineering ,Question answering ,Graph (abstract data type) ,020201 artificial intelligence & image processing ,Computation and Language (cs.CL) ,Information Retrieval (cs.IR) ,0105 earth and related environmental sciences - Abstract
Recent advances in reading comprehension have resulted in models that surpass human performance when the answer is contained in a single, continuous passage of text. However, complex Question Answering (QA) typically requires multi-hop reasoning - i.e. the integration of supporting facts from different sources, to infer the correct answer. This paper proposes Document Graph Network (DGN), a message passing architecture for the identification of supporting facts over a graph-structured representation of text. The evaluation on HotpotQA shows that DGN obtains competitive results when compared to a reading comprehension baseline operating on raw text, confirming the relevance of structured representations for supporting multi-hop reasoning.
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- 2019
50. Transforming Complex Sentences into a Semantic Hierarchy
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Siegfried Handschuh, Matthias Cetto, Christina Niklaus, and André Freitas
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FOS: Computer and information sciences ,Machine translation ,Computer science ,Text simplification ,computer science ,02 engineering and technology ,computer.software_genre ,Set (abstract data type) ,03 medical and health sciences ,0302 clinical medicine ,0202 electrical engineering, electronic engineering, information engineering ,Rhetorical question ,Representation (mathematics) ,Interpretability ,Structure (mathematical logic) ,Computer Science - Computation and Language ,business.industry ,Syntax ,Information extraction ,030221 ophthalmology & optometry ,020201 artificial intelligence & image processing ,Artificial intelligence ,business ,computer ,Computation and Language (cs.CL) ,Natural language processing - Abstract
We present an approach for recursively splitting and rephrasing complex English sentences into a novel semantic hierarchy of simplified sentences, with each of them presenting a more regular structure that may facilitate a wide variety of artificial intelligence tasks, such as machine translation (MT) or information extraction (IE). Using a set of hand-crafted transformation rules, input sentences are recursively transformed into a two-layered hierarchical representation in the form of core sentences and accompanying contexts that are linked via rhetorical relations. In this way, the semantic relationship of the decomposed constituents is preserved in the output, maintaining its interpretability for downstream applications. Both a thorough manual analysis and automatic evaluation across three datasets from two different domains demonstrate that the proposed syntactic simplification approach outperforms the state of the art in structural text simplification. Moreover, an extrinsic evaluation shows that when applying our framework as a preprocessing step the performance of state-of-the-art Open IE systems can be improved by up to 346% in precision and 52% in recall. To enable reproducible research, all code is provided online.
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- 2019
- Full Text
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