324 results on '"Asai, Kiyoshi"'
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2. A streamlined strain engineering workflow with genome-wide screening detects enhanced protein secretion in Komagataella phaffii
3. m6A modification of HSATIII lncRNAs regulates temperature‐dependent splicing
4. The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
5. The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows
6. RintC: fast and accuracy-aware decomposition of distributions of RNA secondary structures with extended logsumexp
7. Bioinformatics tools for lncRNA research
8. Class of cyclic ribosomal peptide synthetic genes in filamentous fungi
9. LncRNA‐dependent nuclear stress bodies promote intron retention through SR protein phosphorylation
10. A semi-supervised learning approach for RNA secondary structure prediction
11. The Effect of γ Phosphate Modified Deoxynucleotide Substrates on PCR Activity and Fidelity.
12. Free-energy calculation of ribonucleic inosines and its application to nearest-neighbor parameters
13. Capturing alternative secondary structures of RNA by decomposition of base-pairing probabilities
14. Characterization of Endogenous Human Argonautes and Their miRNA Partners in RNA Silencing
15. Antagonistic RNA aptamer specific to a heterodimeric form of human interleukin-17A/F
16. CDSfold: an algorithm for designing a protein-coding sequence with the most stable secondary structure
17. PBSIM3: a simulator for all types of PacBio and ONT long reads.
18. Reference-free prediction of rearrangement breakpoint reads
19. A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila
20. Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells
21. Identification and characterization of human non-coding RNAs with tissue-specific expression
22. Coordinated expression of ncRNAs and HOX mRNAs in the human HOXA locus
23. Minimizing the Cross Validation Error to Mix Kernel Matrices of Heterogeneous Biological Data
24. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
25. Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
26. Genome sequencing and analysis of Aspergillus oryzae
27. Analysis of base-pairing probabilities of RNA molecules involved in protein–RNA interactions
28. PBSIM: PacBio reads simulator—toward accurate genome assembly
29. DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition
30. Shape-based alignment of genomic landscapes in multi-scale resolution
31. A mostly traditional approach improves alignment of bisulfite-converted DNA
32. Rchange: algorithms for computing energy changes of RNA secondary structures in response to base mutations
33. Transformations for the compression of FASTQ quality scores of next-generation sequencing data
34. RecountDB: a database of mapped and count corrected transcribed sequences
35. The voltage-sensitive sodium channel is a bell-shaped molecule with several cavities
36. Probabilistic alignments with quality scores: an application to short-read mapping toward accurate SNP/indel detection
37. CentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequences
38. IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming
39. A detailed investigation of accessibilities around target sites of siRNAs and miRNAs
40. Improving the accuracy of predicting secondary structure for aligned RNA sequences
41. Discovery of short pseudogenes derived from messenger RNAs
42. CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score
43. Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation
44. CENTROIDFOLD: a web server for RNA secondary structure prediction
45. Predictions of RNA secondary structure by combining homologous sequence information
46. A local multiple alignment method for detection of non-coding RNA sequences
47. Prediction of RNA secondary structure using generalized centroid estimators
48. The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs
49. Software.ncrna.org: web servers for analyses of RNA sequences
50. Rfold: an exact algorithm for computing local base pairing probabilities
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