1. Mono-, di- and trimeric binding of a bis-netropsin to DNA
- Author
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G. V. Gursky, Alexander S. Zasedatelev, Alexei L. Zhuze, A. M. Nikitin, Richard H. Shafer, S. L. Grokhovsky, Borodulin Vb, and Salmanova Dv
- Subjects
Circular dichroism ,Base pair ,Stereochemistry ,Biophysics ,Biochemistry ,chemistry.chemical_compound ,DNA/drug interaction ,Poly dA-dT ,Structural Biology ,Side-by-side binding ,Genetics ,Binding site ,Molecular Biology ,Minor groove binding ,Cooperative binding ,Netropsin ,Cell Biology ,DNA ,Ligand (biochemistry) ,Crystallography ,Kinetics ,chemistry ,Polynucleotide ,Nucleic Acid Conformation ,Binding domain - Abstract
An unusual 3:1 stoichiometry for complex formation between an elongated bis-netropsin compound and its binding site on DNA has been observed. Circular dichroism measurements distinguish two types of complexes formed between this bisnetropsin and poly[d(A-T)] · poly[d(A-T)]. The first type is characterized by a 1:1 saturating ratio of bound molecules per ten base pairs. Formation of the second type results from the cooperative binding of two additional bis-netropsin molecules to the first type of complex. In contrast to these results observed for binding to the alternating polynucleotide, only the 1:1 type of complex is formed when this ligand binds to the homopolymer poly(dA) · poly(dT).
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