302 results on '"Chen, Chien-Chin"'
Search Results
2. Prospective observational study of Trichomonas tenax infection in patients with pneumonia
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Hong, Zih-Bin, Lai, Yu-Ting, Chen, Chun-Hsien, Lai, Ching-Han, Chen, Yi-Jen, Kuo, Chin-Wei, Chan, Tzu-Yi, Fang, Pei-Chi, Chen, Chien-Chin, and Lin, Wei-Chen
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- 2024
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3. Decellularized Human Umbilical Artery Exhibits Adequate Endothelialization in Xenogenic Transplantation
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Hsia, Kai, Wang, Tien-Shiang, Liu, Chin-Su, Su, Chih-Kuan, Chen, Chien-Chin, Yeh, Chang-Ching, Lee, Hsinyu, Yao, Chao-Ling, Tseng, Tsung-Yu, Chiou, Shih-Hwa, Ma, Hsu, Lin, Chih-Hsun, and Lu, Jen-Her
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- 2023
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4. Computational investigation of turmeric phytochemicals targeting PTR1 enzyme of Leishmania species
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Ullah, Wasia, Wu, Wen-Feng, Malak, Nosheen, Nasreen, Nasreen, Swelum, Ayman A., Marcelino, Liliana Aguilar, Niaz, Sadaf, Khan, Adil, Ben Said, Mourad, and Chen, Chien-Chin
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- 2024
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5. ColdGAN: an effective cold-start recommendation system for new users based on generative adversarial networks
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Chen, Chien Chin, Lai, Po-Lin, and Chen, Chih-Yun
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- 2023
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6. Toxoplasma gondii infection in small ruminants from Khyber Pakhtunkhwa, Pakistan: Seroprevalence, spatial distribution and associated risk factors
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Khattak, Irfan, Usman, Tahir, Swelum, Ayman A., Nasreen, Nasreen, Khan, Adil, Haider, Jamila, Muhammad, Javed, Chen, Chien-Chin, and Ben Said, Mourad
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- 2024
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7. Risk factors for the development of oral precancerous lesions in a cohort of 293 oral lichen planus patients with or without chronic periodontitis in southern Taiwan
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Huang, Hsun-Yu, Lin, Pei-Yu, Chen, Chien-Chin, and Chen, Yuk-Kwan
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- 2024
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8. Acaricidal assessment of the fungal extract of Pleurotus ostreatus against Rhipicephalus microplus: Role of in vitro and in silico analysis
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Alotaibi, Bader S., Malak, Nosheen, Khan, Afshan, Nasreen, Nasreen, Niaz, Sadaf, Ahmad, Imtiaz, Khan, Adil, Rodriguez-Vivas, Roger I., and Chen, Chien-Chin
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- 2023
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9. A collaborative trend prediction method using the crowdsourced wisdom of web search engines
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Fang, Ze-Han and Chen, Chien Chin
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- 2022
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10. HER2 amplification in colorectal cancer with brain metastasis: A propensity score matching study
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Chen, Po-Chuan, Yeh, Yu-Min, Chu, Chun-Ting, Su, Pei-Fang, Chiu, Pin-Hsuan, Lin, Bo-Wen, Chen, Shang-Hung, Lin, Peng-Chan, Lee, Chung-Ta, Chen, Helen H.W., and Chen, Chien-Chin
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- 2023
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11. COHETS: A highlight extraction method using textual streams of streaming videos
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Chen, Chien Chin, Lo, Liang-Wei, and Lin, Sheng-Jie
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- 2022
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12. ADAR2 deficiency ameliorates non‐alcoholic fatty liver disease and muscle atrophy through modulating serum amyloid A1.
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Kung, Mei‐Lang, Yang, Tai‐Hua, Lin, Chia‐Chi, Ho, Jia‐Yun, Hung, Tzu‐Chi, Chang, Chih‐Hsiang, Huang, Kuan‐Wen, Chen, Chien‐Chin, and Chen, Yun‐Wen
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- 2024
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13. Subtractive Proteomics and Reverse-Vaccinology Approaches for Novel Drug Target Identification and Chimeric Vaccine Development against Bartonella henselae Strain Houston-1.
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Rahman, Sudais, Chiou, Chien-Chun, Ahmad, Shabir, Islam, Zia Ul, Tanaka, Tetsuya, Alouffi, Abdulaziz, Chen, Chien-Chin, Almutairi, Mashal M., and Ali, Abid
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BARTONELLA henselae ,DRUG target ,VACCINE development ,PROTEOMICS ,GRAM-negative bacteria ,BINDING energy ,BACTEROIDES fragilis - Abstract
Bartonella henselae is a Gram-negative bacterium causing a variety of clinical symptoms, ranging from cat-scratch disease to severe systemic infections, and it is primarily transmitted by infected fleas. Its status as an emerging zoonotic pathogen and its capacity to persist within host erythrocytes and endothelial cells emphasize its clinical significance. Despite progress in understanding its pathogenesis, limited knowledge exists about the virulence factors and regulatory mechanisms specific to the B. henselae strain Houston-1. Exploring these aspects is crucial for targeted therapeutic strategies against this versatile pathogen. Using reverse-vaccinology-based subtractive proteomics, this research aimed to identify the most antigenic proteins for formulating a multi-epitope vaccine against the B. henselae strain Houston-1. One crucial virulent and antigenic protein, the PAS domain-containing sensor histidine kinase protein, was identified. Subsequently, the identification of B-cell and T-cell epitopes for the specified protein was carried out and the evaluated epitopes were checked for their antigenicity, allergenicity, solubility, MHC binding capability, and toxicity. The filtered epitopes were merged using linkers and an adjuvant to create a multi-epitope vaccine construct. The structure was then refined, with 92.3% of amino acids falling within the allowed regions. Docking of the human receptor (TLR4) with the vaccine construct was performed and demonstrated a binding energy of −1047.2 Kcal/mol with more interactions. Molecular dynamic simulations confirmed the stability of this docked complex, emphasizing the conformation and interactions between the molecules. Further experimental validation is necessary to evaluate its effectiveness against B. henselae. [ABSTRACT FROM AUTHOR]
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- 2024
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14. COL11A1 activates cancer-associated fibroblasts by modulating TGF-β3 through the NF-κB/IGFBP2 axis in ovarian cancer cells
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Wu, Yi-Hui, Huang, Yu-Fang, Chang, Tzu-Hao, Chen, Chien-Chin, Wu, Pei-Ying, Huang, Soon-Cen, and Chou, Cheng-Yang
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- 2021
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15. Trichomonas tenax induces barrier defects and modulates the inflammatory cytotoxicity of gingival and pulmonary epithelial cells
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Hong Zih-Bin, Lai Yu-Ting, Chen Chun-Hsien, Chen Yi-Jen, Chen Chien-Chin, and Lin Wei-Chen
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trichomonas tenax ,cytotoxicity ,cell junctions ,il-6 ,Infectious and parasitic diseases ,RC109-216 - Abstract
Background: Trichomonas tenax is a single-cell flagellated anaerobic organism, commensal in the human oral cavity. Although a previous study indicated that T. tenax could cause cell damage and phagocytose host epithelial cells, its pathological effects on gum cells remain unknown. Furthermore, several case reports have detected T. tenax in several patients with empyema and/or pleural effusion, which may have been aspirated from the oral cavity. However, the cytotoxic effects and immune responses of alveolar cells are unknown. Therefore, we aimed to determine the cytotoxic and immune effects of T. tenax on gums and pulmonary cell lines. The cytopathic effect and lactate dehydrogenase (LDH) cytotoxicity assays were used to determine the level of cell damage in gum and lung epithelial cells. Western blot was used to determine the disruption of cell junctions. Finally, epithelial cell cytokines were measured using ELISA to elucidate the immune response to T. tenax. Results: We found that T. tenax induced a cytotoxic effect on gum epithelial cells by disrupting cell junctions; however, it hardly triggered cellular damage in alveolar A549 cells and mucoepidermoid NCI-H292 cells. Furthermore, T. tenax induced the production of IL-6 at a low multiplicity of infection (MOI) in gum, A549, and NCI-H292 cells. Conclusions: Our results suggest that T. tenax can trigger gingival cell cytotoxicity, disrupt cell junctions, and induce IL-6 production in gingival and pulmonary cell lines.
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- 2023
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16. Antioxidant potential of alkaloids and polyphenols of Viola canescens wall using in vitro and in silico approaches.
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Ahmad, Imtiaz, Huang, Pin-Jui, Malak, Nosheen, Khan, Adil, Asad, Fayaz, Chen, Chien-Chin, Pelaez, Walter Jose, and Iqbal, Furhan
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ANTIOXIDANTS ,ALKALOIDS ,POLYPHENOLS ,IN vitro studies ,FLAVONOIDS - Abstract
Background: V. canescens Wall, a plant renowned for its ethno-medical properties, was investigated in this study for its antioxidant potential based on its wide therapeutic applications in traditional healthcare systems. The study aimed to assess the antioxidant potential of the plant extract/fractions and to predict the active phytochemicals using computational techniques. Methods: Five fractions were obtained from the crude methanolic extract of Viola canescens, and six concentrations (25, 50, 75, 100, 125, and 150 pg/mL) were prepared for each fraction. The antioxidant activity of these fractions was evaluated using the Tetraoxomolybdate (VI) and 1,1-diphenyl-2-picrylhydrazyl (DPPH) assay. In-silico docking studies and molecular dynamic simulations were conducted to further elucidate the molecular interactions underlying the antioxidant activity. Results: The aqueous extract of V. canescens exhibited significant antioxidant and free radical scavenging activity against DPPH. Additionally, the crude flavonoid extract demonstrated moderate activity with IC
50 value of 57.863 pg/mL, indicating potent inhibition of cell growth. In-silico docking studies revealed a strong interaction between emetine and the aromatase protein, suggesting its potential as an antioxidant. Conclusion: The study findings highlight the antioxidant potential of V. canescens extract, indicating its suitability as a source of natural antioxidants. These results suggest its potential application in pharmaceutical preparations aimed at harnessing antioxidant properties for therapeutic purposes. [ABSTRACT FROM AUTHOR]- Published
- 2024
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17. Relationship Between Rectal Swab and Tissue Samples in Mucosa-associated Microbiota in Patients With Inflammatory Bowel Disease.
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Liu, Tsunglin, Lin, Cheng-Han, Chen, Yi-Lin, Yeh, Chien-Cheng, Chiou, Yuan-Yow, Wang, Jiu-Yao, Lee, Chung-Ta, Lee, Kuo-Ting, Shiau, Ai-Li, Wu, Chao-Liang, Chen, Chien-Chin, Kang, Jui-Wen, Chen, Po-Jun, Kuo, Hsin-Yu, Yang, Er-Hsiang, and Chuang, Chiao-Hsiung
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- 2024
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18. Comprehensive evaluation of benign and malignant etiologies of different serous effusions with the International System for Reporting Serous Fluid Cytopathology: A multi‐institutional study in Taiwan.
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Lu, Chun‐Han, Liu, Chih‐Yi, Jhuang, Jie‐Yang, and Chen, Chien‐Chin
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Background: The International System for Reporting Serous Fluid Cytopathology (ISRSFC) was introduced globally in 2019 in response to the absence of a standardized reporting system for serous fluid cytology. This study presents experiences implementing this system across three distinct hospitals in Taiwan. Methods: A total of 6177 serous fluid specimens in three hospitals in Taiwan between 2018 and 2020 were retrospectively reviewed and reclassified according to the ISRSFC. Cytohistological correlation and chart review were further performed to investigate etiologies and risks of malignancy (ROMs). Results: Reclassification showed that 34 (0.7%) of 4838 pleural effusions were nondiagnostic (ND), 4086 (84.5%) were negative for malignancy (NFM), 201 (4.2%) were atypia of undetermined significance (AUS), 92 (1.9%) were suspicious for malignancy (SFM), and 425 (8.8%) were malignant (MAL). The 1231 ascites cases contained 13 (1.1%) ND, 1004 (81.6%) NFM, 53 (4.3%) AUS, 31 (2.5%) SFM, and 130 (10.6%) MAL specimens. In pleural effusions, the ROM was 2.9% for ND, 14.0% for NFM, 52.2% for AUS, 85.9% for SFM, and 95.1% for MAL. In ascites, it was 15.4% for ND, 19.1% for NFM, 52.8% for AUS, 83.9% for SFM, and 92.3% for MAL. In pericardial effusions, it was 0.0% for ND, 11.6% for NFM, 30.8% for AUS, 100.0% for SFM, and 95.2% for MAL. Different effusions' most common benign and malignant etiologies were also disclosed. Conclusions: These multi‐institutional data have determined the diagnostic usefulness of the ISRSFC, which provides pathologists and physicians with invaluable assistance in correctly classifying effusions for further management. The International System for Reporting Serous Fluid Cytopathology (ISRSFC) was introduced globally in 2019 in response to the absence of a standardized reporting system for serous fluid cytology. This study presents experiences implementing this system across three distinct hospitals in Taiwan. These multi‐institutional data have determined the diagnostic usefulness of the ISRSFC, which provides pathologists and physicians with invaluable assistance in correctly classifying effusions for further management. [ABSTRACT FROM AUTHOR]
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- 2024
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19. Sole adjuvant intraoperative breast radiotherapy in Taiwan: a single-center experience
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Yang, Hsin-Yi, Tu, Chi-Wen, Chen, Chien-Chin, Lee, Cheng-Yen, and Hsu, Yu-Chen
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- 2021
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20. First Molecular-Based Confirmation of Dermacentor marginatus and Associated Rickettsia raoultii and Anaplasma marginale in the Hindu Kush Mountain Range.
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Ahmad, Iftikhar, Ullah, Shafi, Alouffi, Abdulaziz, Almutairi, Mashal M., Numan, Muhammad, Tanaka, Tetsuya, Chang, Shun-Chung, Chen, Chien-Chin, and Ali, Abid
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RICKETTSIA ,ANAPLASMA marginale ,DERMACENTOR ,GOATS ,GENETIC markers ,IXODIDAE - Abstract
Simple Summary: Dermacentor ticks have a wide geographic range with an uneven distribution in the globe. They are not scientifically well known because they survive in hard topographic and harsh climatic regions along with elevated mountains. Many mammals serve as a primary host for Dermacentor ticks, like many other tick species. The present study aimed to provide the first morphological and molecular confirmation of Dermacentor marginatus and its related pathogens like Anaplasma marginale and Rickettsia raoultii in Pakistan. In this study, a total of 26 specimens (19 males and 7 females) were collected from goats and morphologically identified. A subset of 18 specimens were subjected for the molecular characterization of ticks and associated pathogen detection. In the BLAST and phylogenetic analyses, D. marginatus and their associated pathogen sequences showed close resemblance with their corresponding species. In the present study, we reported the first genetic characterization of D. marginatus and associated A. marginale and R. raoultii in Pakistan. Due to the difficult access and harsh climate, it is important to investigate the ticks and related pathogens in the northern parts of Pakistan due to their zoonotic threats. Ticks of the genus Dermacentor Koch, 1844 (Acari: Ixodidae) are poorly known systematically due to their habitation in harsh topographic environments and high mountains. Dermacentor ticks are diversely distributed in the Palearctic, Nearctic, and Oriental regions. There is no available information on the occurrence of Dermacentor marginatus in Pakistan; thus, the current investigation aimed the first morphological and molecular confirmation of this species and associated Anaplasma marginale and Rickettsia raoultii. Ticks were collected from goats (Capra hircus) and morphologically identified. Genomic DNA was extracted from 18/26 (69.23%) tick specimens, including 11 males and 7 females (1 unfed and 6 fed females). Extracted DNA was subjected to PCR for the amplification of genetic markers like 16S rDNA and cox1 for ticks, 16S rDNA for Anaplasma spp., and gltA and ompB for Rickettsia spp. A total of 26 D. marginatus ticks composed of 19 males (73.07%) and 7 females (26.9%) [1 (3.84%) unfed and 6 (23.07%) fed females] were collected from goats. According to amplicons via BLAST analysis, the 16S rDNA sequence showed 97.28–98.85% identity and the cox1 sequence showed 95.82–98.03% identity with D. marginatus. Additionally, the 16S rDNA sequence for Anaplasma sp. was detected in D. marginatus that showed 100% identity with Anaplasma marginale. Rickettsial gltA and ompB sequences for Rickettsia sp. showed 100% identity with Rickettsia raoultii. In phylogenetic analysis, ticks' 16S rDNA and cox1 sequences clustered with the same species. In phylogenetic analysis, A. marginale based on 16 rDNA clustered with A. marginale, while gltA and ompB sequences clustered with R. raoultii. This is the first study on the genetic characterization of D. marginatus and associated A. marginale and R. raoultii in Pakistan. The northern areas of Pakistan, which need to be explored in terms of ticks and associated pathogens due to their zoonotic threats, have been neglected due to the inaccessible climatic conditions. [ABSTRACT FROM AUTHOR]
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- 2023
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21. Molecular prevalence and phylogeny of Anaplasma marginale, Anaplasma ovis and Theileria ovis in goats and sheep enrolled from a hill station in Punjab, Pakistan.
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Arif, Muhammad, Saeed, Suleman, Bashir, Ahsan, Farooq, Muhammad, Nasreen, Nasreen, Khan, Adil, Asif, Muhammad, Khalil, Muhammad Asif, Ijaz, Maryam, Muqaddas, Hira, Mehmood, Naunain, Iqbal, Furhan, and Chen, Chien-Chin
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ANAPLASMA marginale ,MOLECULAR phylogeny ,ANAPLASMA ,SHEEP ,THEILERIA ,RUMINANTS ,GOATS ,LIVESTOCK productivity - Abstract
Anaplasma marginale (A. marginale), Anaplasma ovis (A. ovis) and Theileria ovis (T. ovis) are among the most commonly reported intracellular tick borne pathogens that infect ruminants across the globe causing huge economic losses. This study aims to report the prevalence and phylogenetic evaluation of these three pathogens infecting sheep and goats (n = 333) that were enrolled from Fort Munro region in Pakistan by using msp1b, msp4 and 18S rRNA genes for A. marginale, A. ovis and T. ovis respectively. Results revealed almost similar infection rates in sheep and goats with an overall prevalence of 11% for A. marginale, 28% for A. ovis and 3% for T. ovis. Concurrent infection was also recorded, however, the number of animals infected with two pathogens (n = 24; 7.2%) was higher than infection with three pathogens (n = 2; 0.6%). Risk factor analysis revealed that sheep reared in small herds had higher A. marginale (P = 0.03) and A. ovis (P = 0.04) infection rates compared to those from large herds. In addition, it was observed that bucks (P ≤ 0.05) and tick-free goats (P ≤ 0.05) exhibited higher A. ovis infection rates than nannies. Phylogenetic analysis of all three pathogens showed that Pakistani isolates were clustered together and were closely related to previously deposited Pakistani isolates as well as with those that were reported from worldwide countries. In conclusion, we are reporting that Pakistani sheep and goats have A. marginale, A. ovis and T. ovis mediated infections and control measures should be taken against them to improve the productivity of the livestock sector. [ABSTRACT FROM AUTHOR]
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- 2023
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22. Molecular Survey of Rickettsia raoultii in Ticks Infesting Livestock from Pakistan with Notes on Pathogen Distribution in Palearctic and Oriental Regions.
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Shehla, Shehla, Almutairi, Mashal M., Alouffi, Abdulaziz, Tanaka, Tetsuya, Chang, Shun-Chung, Chen, Chien-Chin, and Ali, Abid
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TICKS ,RICKETTSIA ,PALEARCTIC ,DOMESTIC animals ,GENETIC markers ,HYALOMMA - Abstract
Simple Summary: Ticks are chelicerate arthropods that feed on blood and infest all vertebrates except fish and transmit different disease-causing agents including Rickettsia spp. to domestic and wild animals as well as humans. In the present study, we aimed to molecularly screen and genetically characterize Rickettsia spp. in various tick species infesting camels, sheep, and goats from five districts (Kohat, Dera Ismail Khan, Lower Dir, Bajaur, and Mansehra) of Khyber Pakhtunkhwa province, Pakistan. A total of 8/148 (5.4%) ticks, including four Hyalomma turanicum, two Haemaphysalis cornupunctata, one Haemaphysalis montgomeryi, and one Haemaphysalis bispinosa, were found positive for Rickettsia sp. The phylogenetic analysis of detected Rickettsia sp. based on three genetic markers (gltA, ompA, and ompB) revealed 100% identity with Rickettsia raoultii, clustered with its corresponding species reported in China, Russia, USA, Turkey, Denmark, Austria, Italy, and France. Further comprehensive studies on molecular and serosurveillance of various Rickettsia spp. in different ticks should be conducted in the region to understand the zoonotic threats due to these pathogens. Ticks are hematophagous ectoparasites that transmit different pathogens such as Rickettsia spp. to domestic and wild animals as well as humans. Genetic characterizations of Rickettsia spp. from different regions of Pakistan are mostly based on one or two genetic markers and are confined to small sampling areas and limited host ranges. Therefore, this study aimed to molecularly screen and genetically characterize Rickettsia spp. in various tick species infesting camels, sheep, and goats. All the collected tick specimens were morphologically identified, and randomly selected tick species (148) were screened molecularly for the detection of Rickettsia spp. by amplifying three rickettsial DNA fragments, namely, the citrate-synthase gene (gltA), outer-membrane protein A (ompA), and outer-membrane protein B (ompB). After examining 261 hosts, 161 (61.7%) hosts were found infested by 564 ticks, including 287 (50.9%) nymphs, 171 (30.3%) females, and 106 (18.8%) males in five districts (Kohat, Dera Ismail Khan, Lower Dir, Bajaur, and Mansehra). The highest occurrence was noted for Hyalomma dromedarii (number = 72, 12.8%), followed by Haemaphysalis sulcata (n = 70, 12.4%), Rhipicephalus turanicus (n = 64, 11.3%), Rhipicephalus microplus (n = 55, 9.7%), Haemaphysalis cornupunctata (n = 49, 8.7%), Hyalomma turanicum (n = 48, 8.5%), Hyalomma isaaci (n = 45, 8.0%), Haemaphysalis montgomeryi (n = 44, 7.8%), Hyalomma anatolicum (n = 42, 7.5%), Haemaphysalis bispinosa (n = 38, 6.7%), and Rhipicephalus haemaphysaloides (n = 37, 6.6%). A subset of 148 ticks were tested, in which eight (5.4%) ticks, including four Hy. turanicum, two Ha. cornupunctata, one Ha. montgomeryi, and one Ha. bispinosa, were found positive for Rickettsia sp. The gltA, ompA, and ompB sequences revealed 100% identity and were phylogenetically clustered with Rickettsia raoultii reported in China, Russia, USA, Turkey, Denmark, Austria, Italy, and France. Additionally, various reports on R. raoultii from Palearctic and Oriental regions were summarized in this study. To the best of our knowledge, this is the first report regarding genetic characterization and phylogenetic analysis of R. raoultii from Pakistan. Further studies to investigate the association between Rickettsia spp. and ticks should be encouraged to apprise effective management of zoonotic consequences. [ABSTRACT FROM AUTHOR]
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- 2023
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23. Homozygous Mutations in GDAP1 and MFN2 Genes Resulted in Autosomal Recessive Forms of Charcot–Marie–Tooth Disease in Consanguineous Pakistani Families.
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Asif, Muhammad, Chiou, Chien-Chun, Hussain, Malik Fiaz, Hussain, Manzoor, Sajid, Zureesha, Gulsher, Muhammad, Raheem, Afifa, Khan, Adil, Nasreen, Nasreen, Kloczkowski, Andrzej, Hassan, Mubashir, Iqbal, Furhan, and Chen, Chien-Chin
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MISSENSE mutation ,NONSENSE mutation ,CHARCOT-Marie-Tooth disease ,PERIPHERAL neuropathy ,NERVE conduction studies ,GENETIC mutation ,MOTOR unit - Abstract
Charcot–Marie–Tooth disease (CMT) is a heritable neurodegenerative disease of peripheral nervous system diseases in which more than 100 genes and their mutations are associated. Two consanguineous families Dera Ghazi Khan (PAK-CMT1-DG KHAN) and Layyah (PAK-CMT2-LAYYAH) with multiple CMT-affected subjects were enrolled from Punjab province in Pakistan. Basic epidemiological data were collected for the subjects. Nerve conduction study (NCS) and electromyography (EMG) were performed for the patients. Whole-exome sequencing (WES) followed by Sanger sequencing was applied to report the genetic basic of CMT. The NCS findings revealed that sensory and motor nerve conduction velocities for both families were <38 m/s. EMG presented denervation, neuropathic motor unit potential, and reduced interference pattern of peripheral nerves. WES identified that a novel nonsense mutation (c. 226 G>T) in GADP1 gene and a previously known missense mutation in MFN2 gene (c. 334 G>A) cause CMT4A (Charcot–Marie–Tooth disease type 4A) in the PAK-CMT1-DG KHAN family and CMT2A (Charcot–Marie–Tooth disease type 2A) in the PAK-CMT2-LAYYAH family, respectively. Mutations followed Mendelian pattern with autosomal recessive mode of inheritance. Multiple sequence alignment by Clustal Omega indicated that mutation-containing domain in both genes is highly conserved, and in situ analysis revealed that both mutations are likely to be pathogenic. We reported that a novel nonsense mutation and a previously known missense mutation in GAPD1 gene and MFN2 gene, respectively, cause CMT in consanguineous Pakistani families. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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24. Managing the transition in cervical screening methods for Taiwan: Policy recommendations and perspectives.
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Chen, Chien-Chin, Lai, Chyong-Huey, Chang, Chih-Long, Cheng, Wen-Fang, Pwu, Raoh-Fang, Tsai, Jane, Wang, Peng-Hui, Whang-Peng, Jacqueline, and Lai, Gi-Ming
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MEDICAL screening ,HUMAN papillomavirus ,TAIWANESE people ,CERVICAL cancer ,EARLY detection of cancer - Abstract
Since government-provided annual cervical cytology testing for all Taiwanese women aged 30 years or older became available in 1995, both cervical cancer incidence and death have decreased significantly. However, with the 2018 introduction of the national immunization program for human papillomavirus (HPV) vaccination in all schoolgirls aged 13–15 years old, the positive predictive value of cytology testing is expected to decrease with rising vaccination rates, and therefore a transition to more sensitive HPV-based testing may be needed. This position paper, derived from discussions by a panel of experts in cervical cancer screening, provides short-, medium-, and long-term policy recommendations to manage the transition between cervical screening methods for Taiwan. The recommendations include concrete suggestions regarding testing procedures, standards, accreditation, monitoring, promotion, and implementation. It is hoped that comprehensive preparation and management of this transition will enable Taiwan to repeat the previous successes of the cervical cytology testing program. [ABSTRACT FROM AUTHOR]
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- 2023
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25. Commentary on small‐volume biopsy of follicular lymphoma: Practical issues in the molecular era.
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Chen, Chien‐Chin
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Follicular lymphoma (FL) is a common subtype of non‐Hodgkin lymphoma derived from germinal center B‐cells. Small‐volume biopsies (SVBs), including fine‐needle aspiration, needle core biopsy, and cell blocks, are often used for the assessment of patients with FL. Recently, Fitzpatrick et al. found that additional biopsies were frequently needed to supplement SVB for the initial diagnosis of FL. However, regardless of the type of SVB used, additional biopsies were usually not necessary for assessments for transformed or recurrent FL. Their multi‐institutional study reflects the fact that SVB may be sufficient for clinical decision‐making in these medical settings, although surgical excision is the gold standard for a definitive diagnosis of FL. With ancillary tests and advances in molecular testing, SVB has become increasingly popular and helpful, although there are practical limitations. Although surgical excision is the gold standard for a definitive diagnosis of follicular lymphoma, small‐volume biopsy may be sufficient for clinical decision‐making in some medical settings. With ancillary tests and advances in molecular testing, small‐volume biopsy has become increasingly popular and helpful, although there are practical limitations. [ABSTRACT FROM AUTHOR]
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- 2024
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26. Hepatocellular carcinoma-derived high mobility group box 1 triggers M2 macrophage polarization via a TLR2/NOX2/autophagy axis
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Shiau, Dong-Jer, Kuo, Wan-Ting, Davuluri, Goutham Venkata Naga, Shieh, Chi-Chang, Tsai, Pei-Jane, Chen, Chien-Chin, Lin, Yee-Shin, Wu, Yi-Zhen, Hsiao, Yu-Peng, and Chang, Chih-Peng
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- 2020
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27. Recurrent tertiary hyperparathyroidism due to supernumerary parathyroid glands in a patient receiving long-term hemodialysis: a case report
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Tai, Tsai-Sung, Hsu, Yueh-Han, Chang, Jia Ming, and Chen, Chien-Chin
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- 2019
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28. Argas persicus and Carios vespertilionis Ticks Infesting Ducks, Domestic Fowls and Bats in Pakistan: First Report on Molecular Survey and Phylogenetic Position of Borrelia anserina.
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Zahid, Hafsa, Alouffi, Abdulaziz, Almutairi, Mashal M., Ateeq, Muhammad, Tanaka, Tetsuya, Chang, Shun-Chung, Chen, Chien-Chin, and Ali, Abid
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TICK infestations ,POULTRY farms ,BORRELIA ,POULTRY ,TICKS ,VETERINARY public health ,RELAPSING fever ,CYTOCHROME oxidase - Abstract
Simple Summary: Soft ticks are well-known for vectoring several disease-causing pathogens that are distributed throughout the world. Surveillance of disease-causing agents associated with these ticks is important to avoid any zoonotic consequences. This study reported the epidemiology and molecular characterization of Borrelia anserina in Argas persicus collected from domestic fowls, ducks and their shelters and Carios vespertilionis ticks infesting bats in Khyber Pakhtunkhwa (KP), Pakistan. In the phylogenetic tree, the obtained sequences of A. persicus and C. vespertilionis clustered with the sequences from Pakistan and neighboring countries, while the Borrelial flaB sequence revealed its relationship with the corresponding species belonging to the relapsing fever group. Further studies are encouraged to screen soft ticks for pathogens that affect public and veterinary health. Argasid ticks have the vectorial potential for transmitting disease-causing pathogens to avian hosts, resulting in economic losses that may not be fully estimated. Borrelia species are the responsible agents of borreliosis in poultry, animals and humans. Our previous studies have reported a high prevalence of Argas persicus infesting domestic fowls in Khyber Pakhtunkhwa (KP), Pakistan. However, molecular screening and genetic characterization of Borrelia spp. in A. persicus have been neglected in Pakistan. In this study, we focused on the molecular epidemiology and genetic characterization of Borrelia spp. associated with A. persicus ticks infesting domestic fowls and ducks, and Carios vespertilionis infesting bats in selected districts of KP. Overall, 1818 ticks, including females (415; 23%), males (345; 19%), nymphs (475; 26%) and larvae (583; 32%), were collected from 27 locations in nine districts (Peshawar, Mardan, Swabi, Charsadda, Chitral, Lakki Marwat, Bannu, Bajaur and Hangu) from domestic fowls, ducks and their shelters, and bats. A subset of 197 ticks was selected for DNA extraction and PCR to amplify fragments of the cytochrome c oxidase (cox) gene for ticks and flagellin B (flaB) for the detection and genetic characterization of associated Borrelia spp. Among these, only Borrelia anserina DNA was detected in 40 ticks (27.2%) of different life stages, where highest prevalence was found in female ticks (18; 45%), followed by nymphs (12; 30%), larvae (7; 17.5%) and males (3; 7.5%). Tick infestation in shelters (1081; 77%) was higher than on hosts (323; 23%). The resultant cox amplicons of A. persicus showed 100% identity with the same species reported from Pakistan, China, Iran, Kenya, Kazakhstan, Algeria and Egypt and C. vespertilionis show 100% identity with the species reported from Pakistan, China, Japan, Kenya, Vietnam, Spain, Netherlands, the United Kingdom and Hungry, and clustered with the aforementioned species in the phylogenetic tree. The obtained Borrelia sequences showed 100% identity with B. anserina and revealed a close resemblance to the relapsing fever group and clustered in a monophyletic clade with B. anserina from India, Iran and Brazil in a phylogenetic tree. These results establish the first molecular characterization of B. anserina in A. persicus infesting domestic fowls and ducks in the region, as well as their shelters. To effectively control zoonotic consequences, country-wide surveillance research should be encouraged to screen soft ticks infesting various birds for associated pathogens. [ABSTRACT FROM AUTHOR]
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- 2023
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29. Molecular Detection of Rickettsia hoogstraalii in Hyalomma anatolicum and Haemaphysalis sulcata : Updated Knowledge on the Epidemiology of Tick-Borne Rickettsia hoogstraalii.
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Aneela, Aneela, Almutairi, Mashal M., Alouffi, Abdulaziz, Ahmed, Haroon, Tanaka, Tetsuya, da Silva Vaz Junior, Itabajara, Chang, Shun-Chung, Chen, Chien-Chin, and Ali, Abid
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RICKETTSIA ,TICKS ,ANIMAL welfare ,IXODIDAE ,HYALOMMA ,INFECTIOUS disease transmission ,ANIMAL diseases - Abstract
Simple Summary: Ticks are hematophagous ectoparasites that spread diseases to both animals and humans through their bites. They are notorious for carrying various disease-causing agents, such as viruses, protozoa, and bacteria, which present substantial risks to both human and animal well-being. Continuous changes in the climate can impact both tick distribution and abundance. Understanding of the epidemiology of tick-borne Rickettsia hoogstraalii is limited, with gaps in its molecular detection, genetic characterization, and absence of data, especially from Pakistan. This study aimed to use molecular methods to genetically analyze Rickettsia species, particularly R. hoogstraalii, in Pakistan while also contributing new insights into the pathogen′s global epidemiology. For this purpose, ticks were collected from different hosts, including goats, sheep, and cattle, from six districts of Khyber-Pakhtunkhwa, Pakistan. This study is the first to genetically characterize R. hoogstraalii in Hyalomma anatolicum ticks globally and Haemaphysalis sulcata in Pakistan. This species was first described in 2006 in Croatia and has also been detected in different species of ticks in different countries. The pathogenicity of R. hoogstraalii in vertebrate hosts is not well understood. Encouraging additional research is essential to unveil the involvement of ticks in the transmission and persistence of R. hoogstraalii across various host species. Ticks are hematophagous ectoparasites that transmit pathogens to animals and humans. Updated knowledge regarding the global epidemiology of tick-borne Rickettsia hoogstraalii is dispersed, and its molecular detection and genetic characterization are missing in Pakistan. The current study objectives were to molecularly detect and genetically characterize Rickettsia species, especially R. hoogstraalii, in hard ticks infesting livestock in Pakistan, and to provide updated knowledge regarding their global epidemiology. Ticks were collected from livestock, including goats, sheep, and cattle, in six districts of Khyber Pakhtunkhwa (KP) Pakistan. Overall, 183 hosts were examined, of which 134 (73.2%), including goats (number = 39/54, 72.2%), sheep (23/40, 57.5%), and cattle (71/89, 80%) were infested by 823 ticks. The most prevalent tick species was Rhipicephalus microplus (number = 283, 34.3%), followed by Hyalomma anatolicum (223, 27.0%), Rhipicephalus turanicus (122, 14.8%), Haemaphysalis sulcata (104, 12.6%), Haemaphysalis montgomeryi (66, 8.0%), and Haemaphysalis bispinosa (25, 3.03%). A subset of 210 ticks was selected and screened for Rickettsia spp. using PCR-based amplification and subsequent sequencing of rickettsial gltA and ompB fragments. The overall occurrence rate of R. hoogstraalii was 4.3% (number = 9/210). The DNA of Rickettsia was detected in Hy. anatolicum (3/35, 8.5%) and Ha. sulcata (6/49, 12.2%). However, no rickettsial DNA was detected in Rh. microplus (35), Rh. turanicus (35), Ha. montgomeryi (42), and Ha. bispinosa (14). The gltA and ompB fragments showed 99–100% identity with R. hoogstraalii and clustered phylogenetically with the corresponding species from Pakistan, Italy, Georgia, and China. R. hoogstraalii was genetically characterized for the first time in Pakistan and Hy. anatolicum globally. Further studies should be encouraged to determine the role of ticks in the maintenance and transmission of R. hoogstraalii in different hosts. [ABSTRACT FROM AUTHOR]
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- 2023
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30. In Silico Exploration and Experimental Validation of Camellia sinensis Extract against Rhipicephalus microplus and Sarcoptes scabiei : An Integrated Approach.
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Hakami, Mohammed Ageeli, Malak, Nosheen, Khan, Afshan, Ullah, Hidayat, Cossío-Bayúgar, Raquel, Nasreen, Nasreen, Niaz, Sadaf, Khan, Adil, and Chen, Chien-Chin
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SARCOPTES scabiei ,RHIPICEPHALUS ,ACARICIDES ,TEA ,GLUTATHIONE transferase ,PLANT extracts ,MOLECULAR docking - Abstract
Sarcoptes scabiei is an ectoparasite of humans and animals that causes scabies. The Rhipicephalus (Boophilus) microplus is a blood-sucking ectoparasite that transmits various pathogens. These two parasites have caused great losses to a country's dairy and agriculture sectors. The aim of this study was to determine the in vitro and in silico efficacy of Camellia sinensis plant extracts. Different concentrations of C. sinensis ethanolic plant extracts were prepared using the maceration method and were used against mites and ticks (in adult immersion test AIT and larval packet test LPT) to evaluate their in vitro acaricidal activity. Additionally, in silico molecular docking was performed to investigate the inhibitory interactions between the phytochemicals of the plant and S. scabiei and R. microplus glutathione transferase proteins (SsGST and RmGST). This study observed that the plant extract showed high efficacy in vitro against mites and different tick stages in adult immersion and larval packet tests. Additionally, the in silico study revealed a strong binding interaction between ellagic acid and SsGST protein, with a binding energy of −7.3 kcal/mol, with respect to permethrin (−6.7 kcal/mol), whereas quercetin and RmGST resulted in a docking score of −8.6 kcal/mol compared to deltamethrin (−8.2 kcal/mol). Overall, this study explored the potential of C. sinensis as a natural alternative for controlling tick and mite infestations and provided insights into the inhibitory mechanisms of its phytochemicals. [ABSTRACT FROM AUTHOR]
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- 2023
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31. Epidemiology and Phylogeny of Anaplasma ovis with a Note on Hematological and Biochemical Changes in Asymptomatic Goats Enrolled from Four Districts in Punjab, Pakistan.
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Taqadus, Asia, Chiou, Chien-Chun, Amaro-Estrada, Itzel, Asif, Muhammad, Nasreen, Nasreen, Ahmad, Ghafoor, Iqbal, Javaid, Ali, Muhammad, Khan, Adil, Iqbal, Furhan, and Chen, Chien-Chin
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GOAT breeds ,GOATS ,ANAPLASMA ,ERYTHROCYTES ,GRAM-negative bacteria ,BREEDING ,NEUTROPHILS - Abstract
Background:Anaplasma ovis is an intra-erythrocytic gram negative rickettsial bacterium that infects small ruminants, resulting in huge economic losses worldwide. Materials and Methods: The present investigation aims at reporting the molecular prevalence of A. ovis in 1200 asymptomatic goats that were enrolled from 4 districts (Layyah, Lohdran, Dera Ghazi Khan, and Rajanpur) in Punjab, Pakistan by targeting the msp4 gene of bacterium. Risk factors associated with the prevalence of A. ovis and phylogeny of bacterium were also documented. Results: 184 out of 1200 (15%) goat blood samples were infected with A. ovis. The prevalence of the pathogen varied with the sampling sites (p = 0.005), and the highest prevalence was detected in goats from Layyah (19%) followed by Rajanpur (17%), Dera Ghazi Khan (15%), and Lohdran district (9%). The represented partial msp4 gene amplicon was confirmed by Sanger sequencing and deposited to GenBank (OP225957-59). Phylogenetic analysis revealed that the amplified isolates resembled the msp4 sequences reported from Iran, Mangolia, Sudan, and the United States. Sex and age of goats, herd composition and size, and the presence of ticks on goats and dogs associated with herds were the rick factors associated with the prevalence of A. ovis. Red blood cells, lymphocytes (%), neutrophils (%), hemoglobin, and hematocrit levels in blood and Aspartate amino transferase, urea, and creatinine levels in serum were disturbed in A. ovis infected goats when compared with uninfected animals. Conclusion: We are reporting the prevalence of A. ovis in Pakistani goats from four districts of Punjab and these data will help in developing the integrated control policies against this tick-borne pathogen that is infecting our goat breeds. [ABSTRACT FROM AUTHOR]
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- 2023
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32. The COVID‐19 pandemic has impeded cytopathology practices and hindered cancer screening and management.
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Huang, Cheng‐Yi and Chen, Chien‐Chin
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MEDICAL personnel , *COVID-19 pandemic , *EARLY detection of cancer , *CELLULAR pathology , *MEDICAL education , *FAULT diagnosis , *WEB-based user interfaces - Abstract
The COVID‐19 pandemic has had a global impact on the environment and economy and has affected hospital administration and patient behaviour. Since human‐to‐human coronavirus transmission occurs via droplets and physical contact, health care professionals are particularly vulnerable to contracting COVID‐19. Many cytopathology laboratories updated their workflow, established new standard biosafety protocols, and built digital pathology or telescope platforms to mitigate these risks and deal with the shortage of health care personnel. The COVID‐19 pandemic also disrupted medical education—all indoor training events, including conferences, multidisciplinary tumour boards, seminars, and microscope inspections were postponed. As a result, many laboratories now use new web‐based applications and platforms to maintain educational programs and multidisciplinary tumour boards. To comply with government directives, health care facilities postponed non‐emergency surgeries, reduced the number of routine medical examinations, restricted visitor numbers, and scaled back cancer screening activities, resulting in a sharp decline in cytopathology diagnoses, cancer screening specimens, and molecular testing for cancer. Subsequent misses or delays in the diagnosis and treatment of cancer were not uncommon. This review aims to provide comprehensive summaries of the consequences of the COVID‐19 pandemic for cytopathology, particularly in terms of cancer diagnosis, workload, human resources, and molecular testing. [ABSTRACT FROM AUTHOR]
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- 2023
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33. Seasonality, epidemiology and phylogeny of Theileria ovis with a note on hematological and biochemical changes in asymptomatic infected goats from Pakistan.
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Irfan, Muhammad, Chang, Shun-Chung, Iqbal, Rana Khalid, Tanveer, Muhammad, Asif, Muhammad, Khan, Adil, Nasreen, Nasreen, Atif, Farhan Ahmad, Shaikh, Rehan Sadiq, Aktas, Munir, Ben Said, Mourad, Iqbal, Furhan, and Chen, Chien-Chin
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GOAT breeds ,GENE amplification ,LEUKOCYTE count ,GOATS ,DNA sequencing ,CHI-squared test ,BLOOD urea nitrogen - Abstract
Caprine theileriosis, caused by Theileria ovis is a serious production issue, especially in the areas that depend on goats and sheep for milk, meat, and other economic benefits. Pakistan has a large goat population, but few reports have been documented from this country regarding PCR-based detection of T. ovis. The molecular prevalence of T. ovis, on a seasonal basis, in various goat breeds enrolled from Muzaffar Garh district of Punjab in Pakistan was determined from October 2018 to September 2019. In this study, 1084 goat blood samples were screened for the detection of T. ovis DNA through PCR-based amplification of 18S rRNA gene. Out of 1084 goats, 12 (1.11%) were infected with T. ovis. The parasite prevalence varied with the sampling seasons (Chi square test, P = 0.008), and the parasite prevalence was highest in goat blood samples collected in summer (2.39%) followed by winter (1.88%). DNA sequencing and BLAST analysis confirmed the presence of T. ovis, and the amplified isolates from the 18S rRNA gene of T. ovis were found to be highly conserved during phylogenetic analysis. Young goats (Fischer exact test, P = 0.022) were found more infected with T. ovis during the winter season. Infected goats had elevated white blood cell counts (Two-sample t-test, P = 0.04), blood urea nitrogen to Creatinine ratio (Two-sample t-test, P = 0.02) and decreased serum Creatinine (Two-sample t-test, P = 0.001) as compared to T. ovis negative goats. We report a relatively low molecular prevalence of T. ovis in goats from the Muzaffar Garh district. However, it is recommended that control measures to eradicate T. ovis infection in goats in this area should be taken. [ABSTRACT FROM AUTHOR]
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- 2023
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34. Experimental and Numerical Investigation of the Mechanical Properties of a Fiber-Reinforced Geopolymer Mortar Blast Resistant Panel.
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Chen, Chien-Chin, Tsai, Ying-Kuan, Lin, Yu-Kai, Ho, Pin-Hsuan, and Kuo, Chang-Yu
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MORTAR , *FIBERBOARD , *FIBER cement , *FAILURE mode & effects analysis , *BENDING strength , *CARBON emissions - Abstract
Geopolymer materials have excellent properties such as high strength, low thermal conductivity, fire resistance, acid and alkali resistance, and low carbon emissions. They can be used as protective engineering materials in places with explosion risks. At present, the common composite blast resistant panel is in the form of a sandwich: the outer layer isgalvanized steel plate, and fiber cement board or calcium carbonate board is used as the inner layer material, as these boards have the advantages of easy installation, good fire resistance, and explosion resistance. This study investigates the effect of adding different types of fibers to geopolymer mortar on the mortar's basic mechanical properties, such as compression strength, bending strength, and impact resistance. The explosive resistance of the fiber-reinforced geopolymer mortar blast resistant panels was evaluated through free-air explosion. In this paper, experimental procedures and numerical simulation have been performed to study the failure modes, maximum deflection, and dynamic response of the fiber-reinforced geopolymer mortar blast resistant panel under free-air explosion. The research results can provide a reference for the design and production of blast resistant panels. [ABSTRACT FROM AUTHOR]
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- 2023
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35. Who should you follow? Combining learning to rank with social influence for informative friend recommendation
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Chen, Chien Chin, Shih, Shun-Yuan, and Lee, Meng
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- 2016
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36. A novel trend surveillance system using the information from web search engines
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Fang, Ze-Han and Chen, Chien Chin
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- 2016
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37. Predicting the success of group buying auctions via classification
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Chen, Chien Chin and Chung, Meng-Chieh
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- 2015
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38. Modified Sauve-Kapandji Procedure Using Iliac Bone Graft for Giant Cell Tumor of the Distal Ulna: Stabilizing With Two-Screw Fixation: A Case Report
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Tsai, Ting-Chien, Chen, Chien-Chin, Huang, Hui-Kuang, and Wang, Jung-Pan
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- 2019
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39. Akt inhibitor SC66 promotes cell sensitivity to cisplatin in chemoresistant ovarian cancer cells through inhibition of COL11A1 expression
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Wu, Yi-Hui, Huang, Yu-Fang, Chen, Chien-Chin, and Chou, Cheng-Yang
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- 2019
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40. Simultaneous molecular detection of Anaplasma marginale and Theileria annulata in cattle blood samples collected from Pakistan-Afghanistan boarder region.
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Jamil, Sania, Chiou, Chien-Chun, Muqaddas, Hira, Ullah, Hayat, Asif, Muhammad, Rao, Sana, Hussain, Hafsa, Fatima, Qandeel, Nasreen, Nasreen, Niaz, Sadaf, Dzul-Rosado, Karla, Khan, Adil, Iqbal, Furhan, and Chen, Chien-Chin
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THEILERIA ,ANAPLASMA marginale ,BLOOD sampling ,CATTLE ,LIVESTOCK productivity ,TICK control - Abstract
Theileria annulata (T. annulata) and Anaplasma marginale (A. marginale) are among the most extensively reported tick borne pathogens and are associated with huge economic losses worldwide. A total of 298 cattle blood samples were screened to report the presence of these two pathogens. The samples were collected from apparently healthy cattle (Achai, n = 155, Jersy, n = 88 and crossbred, n = 55) in Bajaur district of Khyber Pakhtunkhwa (KPK) during June and July of 2022. A total of 31 out of 298 cattle (10.4%) were found infected with T. annulata as PCR amplified a 156 base pair fragment from Tams-1 gene of T. annulata from their blood. While 16/298 animals (5.4%) were found infected with A. marginale as they amplified a 382 base pair fragment specific for msp5 gene of this bacterium. Three animals (1%) were found co infected. Cattle susceptibility to T. annulata infection was significantly higher than A. marginale infection (P < 0.001). Phylogenetic analysis revealed that Pakistani isolates of both detected pathogen clustered together and were closely related isolates from worldwide countries. Prevalence of T. annulata varied significantly among the sampling sites (P = 0.05) while no such association was observed for A. marginale among the tested cattle. Epidemiological data analysis revealed that none of the studied risk factors was found associated either with the prevalence of T. annulata or A. marginale (P > 0.05) among enrolled cattle. In conclusion, our study has revealed a relatively higher prevalence of T. annulata than A. marginale in cattle from the Bajaur district in KPK. This information is important for improving the productivity of the livestock sector, which is one of the main sources of income in the country. It is recommended that this data be taken into account for the development and implementation of effective tick control programs, as well as for the improvement of livestock management practices to prevent and manage TBDs in Pakistan. [ABSTRACT FROM AUTHOR]
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- 2023
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41. Evaluation of Fine Needle Aspiration Cytopathology in Salivary Gland Tumors under Milan System: Challenges, Misdiagnosis Rates, and Clinical Recommendations.
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Huang, Yi-Tien, Ho, Chen-Yu, Ou, Chun-Yen, Huang, Cheng-Chih, Lee, Wei-Ting, Tsai, Shu-Wei, Hsu, Heng-Jui, Hung, David Shang-Yu, Tsai, Chien-Sheng, Fang, Sheen-Yie, Tsai, Sen-Tien, Hsiao, Jenn-Ren, Chang, Chan-Chi, and Chen, Chien-Chin
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NEEDLE biopsy ,SALIVARY glands ,PLEOMORPHIC adenoma ,CELLULAR pathology ,DIAGNOSTIC errors - Abstract
(1) Background: Salivary gland tumors are rare in the head and neck. To determine the need and extent of surgical intervention, fine needle aspiration (FNA) is a widely accepted tool to approach salivary gland lesions. However, the FNA cytology varies between entities, while the lack of uniform terminology makes diagnosis more challenging. Since establishing the Milan system for reporting salivary gland cytopathology (MSRSGC) has become an increasingly accepted reporting standard, further examination and detailed recommendations were needed. (2) Methods: Between April 2013 and October 2021, 375 cases with FNA and salivary gland resection were retrospectively collected. All FNA specimens were reclassified according to the criteria of MSRSGC. After surgical excision, the FNA data were compared with the histological diagnosis to estimate the risk of malignancy (ROM), the risk of neoplasm (RON), and the diagnostic accuracy for each diagnostic category. (3) Results: Our cohort's distribution of ROM and RON was similar to the MSRSGC's recommendation. Carcinoma ex pleomorphic adenoma (CXPA) has the highest rate (66.7%) of misdiagnosed as a nonneoplastic lesion or benign salivary gland tumor. Pleomorphic adenoma (PA) and Warthin's tumor were the most common benign salivary gland tumors, while the cytology diagnosis of Warthin's tumor seems more challenging than PAs. (4) Conclusions: Despite the convenience and effectiveness of MSRSGC, we suggest close follow-up, re-biopsy, or surgical removal for salivary lesions even in Milan IVA-Benign for possibly missing FNA of malignancy, mixed lesions, or prevention of malignant transformation. [ABSTRACT FROM AUTHOR]
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- 2023
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42. Individual and Community-Level Risk Factors for Giardiasis in Children under Five Years of Age in Pakistan: A Prospective Multi-Regional Study.
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Khattak, Irfan, Yen, Wen-Lan, Usman, Tahir, Nasreen, Nasreen, Khan, Adil, Ahmad, Saghir, Rehman, Gauhar, Khan, Khurshaid, Said, Mourad Ben, and Chen, Chien-Chin
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GIARDIASIS ,CROSS-sectional method ,MULTIVARIATE analysis ,WASTE management ,COMMUNITIES ,CATS ,RISK assessment ,ENZYME-linked immunosorbent assay ,DESCRIPTIVE statistics ,RESEARCH funding ,ODDS ratio ,DATA analysis software ,HAND washing ,LONGITUDINAL method ,SERVICE animals ,DOGS ,DISEASE risk factors ,CHILDREN - Abstract
Objectives: This study aimed to estimate the prevalence of Giardia lamblia infection and identify associated risk factors at both individual and community levels in a pediatric population in different agroecological zones of Khyber Pakhtunkhwa, Pakistan. Methods: A community-based cross-sectional study was conducted from March to December 2022. Using stratified sampling, 1026 households were recruited from nine agroecological zones. Stool samples were collected from 1026 children up to the age of five years and processed for detection of Giardia using a commercial ELISA kit. Data on potential risk factors were collected using a pre-structured questionnaire. A multivariable logistic regression model was used to identify risk factors associated with giardiasis. Results: The study found that the prevalence of giardiasis in the study area was 3.31%. Children aged 13–24 months were found to be at higher risk for giardiasis. Illiterate mothers and fathers attending daycare institutions/kindergartens, mothers not practicing hand washing during critical times, households with companion animals, and homes where stray dogs/cats enter were identified as predictors of giardiasis at the individual level. Children living in sub-mountain valleys use un-piped water, inadequate domestic water storage vessels, drink un-boiled or unfiltered water, live near rubbish heaps or un-paved streets/pathways, and have unimproved latrine facilities were identified as risk factors of giardiasis at the community level. Conclusions: The study highlights the need for integrated intervention approaches at both individual and community levels to reduce the incidence of giardiasis in Khyber Pakhtunkhwa, Pakistan. Interventions aimed at promoting behavioral change and providing safe and adequate water sources, combined with individual-level interventions such as hand washing and awareness of giardiasis prevention methods, would be critical to addressing this health concern. Inter-sectoral collaboration between the health sector and other sectors would also be necessary to achieve meaningful progress in reducing the incidence of giardiasis in resource-limited areas. [ABSTRACT FROM AUTHOR]
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- 2023
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43. Lipid Accumulation in Blastocystis Increases Cell Damage in Co-Cultured Cells.
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Liao, Chen-Chieh, Chen, Chun-Hsien, Shin, Jyh-Wei, Lin, Wei-Chen, Chen, Chien-Chin, and Chu, Chun-Ting
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BLASTOCYSTIS ,PALMITIC acid ,ARACHIDONIC acid ,OLEIC acid ,LIPIDS ,ABDOMINAL pain - Abstract
Blastocystis hominis is an intestinal protozoan that is often neglected, despite causing abdominal pain and diarrhea. Previous research has demonstrated that lipids can be synthesized by B. hominis or can accumulate in growth medium, but their function and mechanisms in the pathogenesis of Blastocystis remain unclear. Our study found that lipid-rich Blastocystis ST7-B can increase inflammation and disrupt Caco-2 cells more than the same parasite without the lipovenoes supplement. Additionally, the cysteine protease of Blastocystis, a virulence factor, is upregulated and has higher activity in lipid-rich Blastocystis. In order to better understand the effects of lipids on Blastocystis pathogenesis, we treated lipid-lowering pravastatin during Blastocystis ST7-B culturing with a lipovenoes supplement, which decreased the lipid levels of the Blastocystis and reduced the Blastocystis-induced inflammation and cell disruption of Caco-2 cells. We also analyzed the fatty acid composition and possible synthesis pathway in Blastocystis ST7-B, finding significantly higher ratios of arachidonic acid, oleic acid, and palmitic acid than in the other lipid components in lipid-rich Blastocystis ST7-B. These results suggest that lipids play a significant role in the pathogenesis of Blastocystis and provide important information on the molecular mechanisms of and potential treatments for Blastocystis infection. [ABSTRACT FROM AUTHOR]
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- 2023
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44. Distribution and clinical features of lymphomas involving skin in Taiwan.
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Wu, Cheng‐Lin, Chang, Su‐Wei, Lee, Julia Yu‐Yun, Chen, Tsai‐Yun, Chen, Chien‐Chin, Chu, Chia‐Bao, Medeiros, L. Jeffrey, and Chang, Kung‐Chao
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CUTANEOUS T-cell lymphoma ,DIFFUSE large B-cell lymphomas ,ANAPLASTIC large-cell lymphoma ,T-cell lymphoma ,LYMPHOMAS ,MUCOSA-associated lymphoid tissue lymphoma - Abstract
A wide variety of primary and secondary lymphoma types involves the skin. However, reports with comparisons between both groups are limited in Taiwan. We retrospectively enrolled all cutaneous lymphomas and evaluated their clinicopathologic features. There were 221 cases of lymphoma: 182 (82.3%) primary and 39 (17.7%) secondary. Mycosis fungoides was the most common primary T‐cell lymphoma, 92 (41.7%) cases, followed by CD30‐positive T‐cell lymphoproliferative disorders including lymphomatoid papulosis (n = 33, 14.9%) and cutaneous anaplastic large cell lymphoma (n = 12, 5.4%). The most frequent primary B‐cell lymphomas were marginal zone lymphoma (n = 8, 3.6%) and diffuse large B‐cell lymphoma (DLBCL), leg type (n = 8, 3.6%). DLBCL including variants was the most common secondary lymphoma involving skin. Most primary lymphomas presented at low‐stage (T‐cell, 86%; B‐cell, 75%), whereas the majority of secondary lymphomas presented at high‐stage (T‐cell, 94%; B‐cell, 100%). Patients with secondary lymphomas had an older mean age, more frequent B symptoms, lower serum albumin and hemoglobin, and a higher frequency of atypical lymphocytes in blood than those with primary lymphomas. In primary lymphomas, older age, lymphoma types, decreased lymphocyte counts and atypical lymphocytes in blood were poorer prognostic factors. In secondary lymphoma patients, lymphoma types, high serum lactate dehydrogenase and low hemoglobin levels predicted poorer survival. We found that the distribution of primary cutaneous lymphomas in Taiwan mirrors that of other Asian countries but shows some differences as compared with Western countries. Primary cutaneous lymphomas have a better prognosis than secondary lymphomas. Histologic classification of lymphomas highly correlated with disease presentation and prognosis. [ABSTRACT FROM AUTHOR]
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- 2023
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45. Density Functional Theory Calculations and Molecular Docking Analyses of Flavonoids for Their Possible Application against the Acetylcholinesterase and Triose-Phosphate Isomerase Proteins of Rhipicephalus microplus.
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Malak, Nosheen, Alotaibi, Bader S., Khan, Afshan, Khan, Adil, Ullah, Shakir, Nasreen, Nasreen, Niaz, Sadaf, and Chen, Chien-Chin
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TRIOSE-phosphate isomerase ,DENSITY functional theory ,MOLECULAR theory ,MOLECULAR docking ,RHIPICEPHALUS ,ACETYLCHOLINESTERASE ,ISOMERASES - Abstract
Ticks and tick-borne diseases constitute a substantial hazard to the livestock industry. The rising costs and lack of availability of synthetic chemical acaricides for farmers with limited resources, tick resistance to current acaricides, and residual issues in meat and milk consumed by humans further aggravate the situation. Developing innovative, eco-friendly tick management techniques, such as natural products and commodities, is vital. Similarly, searching for effective and feasible treatments for tick-borne diseases is essential. Flavonoids are a class of natural chemicals with multiple bioactivities, including the inhibition of enzymes. We selected eighty flavonoids having enzyme inhibitory, insecticide, and pesticide properties. Flavonoids' inhibitory effects on the acetylcholinesterase (AChE1) and triose-phosphate isomerase (TIM) proteins of Rhipicephalus microplus were examined utilizing a molecular docking approach. Our research demonstrated that flavonoids interact with the active areas of proteins. Seven flavonoids (methylenebisphloridzin, thearubigin, fortunellin, quercetagetin-7-O-(6-O-caffeoyl-β-d-glucopyranoside), quercetagetin-7-O-(6-O-p-coumaroyl-β-glucopyranoside), rutin, and kaempferol 3-neohesperidoside) were the most potent AChE1 inhibitors, while the other three flavonoids (quercetagetin-7-O-(6-O-caffeoyl-β-d-glucopyranoside), isorhamnetin, and liquiritin) were the potent inhibitors of TIM. These computationally-driven discoveries are beneficial and can be utilized in assessing drug bioavailability in both in vitro and in vivo settings. This knowledge can create new strategies for managing ticks and tick-borne diseases. [ABSTRACT FROM AUTHOR]
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- 2023
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46. Antidiarrheal Potential of Viola canescens : In Vivo and In Silico Approaches.
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Ahmad, Imtiaz, Alotaibi, Bader S., Malak, Nosheen, Asad, Fayaz, Ullah, Barkat, Nasreen, Nasreen, Khan, Adil, and Chen, Chien-Chin
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VIOLA ,ETHYL acetate ,MOLECULAR docking ,OPIOID receptors ,CHARCOAL ,QUERCETIN - Abstract
Viola canescens Wall. is an important medicinal plant with reported therapeutic benefits. The current work sought to investigate the antidiarrheal properties of V. canescens extracts both in vivo and in silico. This study applied molecular docking to unravel the molecular mechanism of V. canescens and to find the most effective phytocompounds with antidiarrheal effects. The antidiarrheal activity of V. canescens was assessed utilizing the castor oil-induced diarrhea assay and the charcoal meal assay. Antidiarrheal characteristics were evaluated by measuring parameters such as intestinal motility, fecal score, and hypersecretion. The V. canescens extract had a dose-dependent and statistically significant impact in the charcoal meal assay and castor oil-induced diarrhea assay. In the castor oil-induced diarrhea assay, the ethyl acetate fraction (65.96%) showed the highest percentage of defecation inhibition at the highest dose (300 mg/kg (bw)), followed by the uncorrected crystalline compound (63.83%), crude alkaloids (63.83%), chloroform fraction (63.83%), and crude flavonoids (55.32%), while the aqueous fraction (40.43%) and n-Hexane fraction (42.55%) revealed the lowest antidiarrheal potential. In addition, the molecular docking investigation showed emetine, quercetin, and violanthin, isolated chemicals of V. canescens, to have the highest binding affinity to the target μ and δ opioid receptors with significant inhibitory capacity. These pharmacologically active metabolites in V. canescens were effective in treating diarrhea. This study lends credence to the traditional usage of V. canescens in treating gastrointestinal disorders. [ABSTRACT FROM AUTHOR]
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- 2023
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47. Negative regulation of type I interferon signaling by integrin-linked kinase permits dengue virus replication.
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Kao, Yi-Sheng, Wang, Li-Chiu, Chang, Po-Chun, Lin, Heng-Ming, Lin, Yee-Shin, Yu, Chia-Yi, Chen, Chien-Chin, Lin, Chiou-Feng, Yeh, Trai-Ming, Wan, Shu-Wen, Wang, Jen-Ren, Ho, Tzong-Shiann, Chu, Chien-Chou, Zhang, Bo-Cheng, and Chang, Chih-Peng
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VIRAL nonstructural proteins ,DENGUE viruses ,TYPE I interferons ,VIRAL replication ,DENGUE hemorrhagic fever ,SUPPRESSORS of cytokine signaling ,CYTOSKELETAL proteins - Abstract
Dengue virus (DENV) infection can induce life-threatening dengue hemorrhagic fever/dengue shock syndrome in infected patients. DENV is a threat to global health due to its growing numbers and incidence of infection in the last 50 years. During infection, DENV expresses ten structural and nonstructural proteins modulating cell responses to benefit viral replication. However, the lack of knowledge regarding the cellular proteins and their functions in enhancing DENV pathogenesis impedes the development of antiviral drugs and therapies against fatal DENV infection. Here, we identified that integrin-linked kinase (ILK) is a novel enhancing factor for DENV infection by suppressing type I interferon (IFN) responses. Mechanistically, ILK binds DENV NS1 and NS3, activates Akt and Erk, and induces NF-κB-driven suppressor of cytokine signaling 3 (SOCS3) expression. Elevated SOCS3 in DENV-infected cells inhibits phosphorylation of STAT1/2 and expression of interferon-stimulated genes (ISGs). Inhibiting ILK, Akt, or Erk activation abrogates SOCS3 expression. In DENV-infected mice, the treatment of an ILK inhibitor significantly reduces viral loads in the brains, disease severity, and mortality rate. Collectively, our results show that ILK is a potential therapeutic target against DENV infection. Author summary: Dengue virus (DENV) can alter cell responses to benefit viral replication. However, most cellular proteins, especially those enhancing viral replication, remains unknown, and their roles in DENV pathogenesis are elusive. Here, we show that integrin-linked kinase (ILK) enhanced DENV infection. ILK binds DENV NS1 and NS3 to induce SOCS3 expression and abrogate STAT1/2-mediated expression of interferon-stimulated genes via the Akt-Erk- NF-κB pathway. Knockdown or inhibiting ILK enhances SOCS3 expression and reduces DENV yields in cells. Furthermore, inhibiting ILK in DENV-infected mice significantly decreased viral loads in the mouse brain and mortality. In conclusion, we identified ILK as a potential therapeutic target for DENV infection. [ABSTRACT FROM AUTHOR]
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- 2023
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48. EBV infection mediated BDNF expression is associated with bladder inflammation in interstitial cystitis/bladder pain syndrome with Hunner's lesion.
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Jhang, Jia‐Fong, Liu, Cheng‐Der, Hsu, Yung‐Hsiang, Chen, Chien‐Chin, Chen, Hsiang‐Chin, Jiang, Yuan‐Hong, Wu, Wan‐Chen, Peng, Chih‐Wen, and Kuo, Hann‐Chorng
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INTERSTITIAL cystitis ,CYSTITIS ,BRAIN-derived neurotrophic factor ,B cells ,T cells ,NERVE tissue - Abstract
Interstitial cystitis/bladder pain syndrome with Hunner's lesion (HIC) is characterized by chronic inflammation and nerve hyperplasia; however, the pathogenesis of HIC remains a mystery. In this study, we detected both Epstein–Barr virus (EBV) latency infection genes EBNA‐1 and LMP‐1 and EBV lytic infection BZLF‐1 and BRLF‐1 expression in the HIC bladders, indicating the coexistence of EBV persistence and reactivation in the B cells in HIC bladders. Upregulation of EBV‐associated inflammatory genes in HIC bladders, such as TNF‐α and IL‐6, suggests EBV infection is implicated in the pathogenesis of bladder inflammation. Nerve hyperplasia and upregulation of brain‐derived neurotrophic factor (BDNF) were noted in the HIC bladders. Double immunochemical staining and flow cytometry revealed the origin of BDNF to be EBV‐infected B cells. Inducible BDNF expression was noted in B cells upon EBV infection, but not in the T cells. A chromatin immunoprecipitation study revealed BDNF transcription could be promoted by cooperation between EBV nuclear antigens, chromatin modifiers, and B‐cell‐specific transcription. Knockdown of BDNF in EBV‐infected B cells resulted in the inhibition of cell proliferation and viability. Downregulation of phosphorylated SMAD2 and STAT3 after BDNF knockdown may play a role in the mechanism. Implantation of latent EBV‐infected B cells into rat bladder walls resulted in a higher expression level of CD45 and PGP9.5, suggesting tissue inflammation and nerve hyperplasia. In contrast, implantation of BDNF depleted EBV‐infected B cells abrogated these effects. This is the first study to provide insights into the mechanisms underlying the involvement of EBV‐infected B cells in HIC pathogenesis. © 2022 The Pathological Society of Great Britain and Ireland. [ABSTRACT FROM AUTHOR]
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- 2023
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49. An effective recommendation method for cold start new users using trust and distrust networks
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Chen, Chien Chin, Wan, Yu-Hao, Chung, Meng-Chieh, and Sun, Yu-Chun
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- 2013
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50. Ethanolic Extracts of Datura innoxia Have Promising Acaricidal Activity against Rhipicephalus microplus as It Blocks the Glutathione S-Transferase Activity of the Target Tick.
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Saman, Saman, Chen, Chien-Chin, Malak, Nosheen, Khan, Afshan, Nasreen, Nasreen, Khan, Adil, Niaz, Sadaf, Rehman, Gauhar, Rodriguez-Vivas, Roger I., and Cossío-Bayúgar, Raquel
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GLUTATHIONE , *RHIPICEPHALUS , *ACARICIDES , *PLANT extracts , *TICKS , *MOLECULAR docking - Abstract
Rhipicephalus microplus is a major bovine ectoparasite that negatively impacts the cattle industry. The acaricidal activity of Datura innoxia ethanolic plant extract against R. microplus, compared with trichlorfon, was examined using the adult immersion test (AIT), and larval packet test (LPT). In vitro acaricidal activity of the selected plant extract against R. microplus engorged females was evaluated at different concentrations (2.5, 5, 10, 20, and 40 mg/mL), and was the same for AIT and LPT. It was further supported by in silico molecular docking of D. innoxia's 21 phytochemicals against the R. microplus Glutathione S-transferases (RmGST) protein's three-dimensional (3D) structure predicted by the trRosetta server. The modeled 3D structure was then evaluated and confirmed with PROCHECK, ERRAT, and Verify3D online servers. To predict the binding mechanisms of these compounds, molecular docking was performed using Auto dock Vina software, and molecular dynamic (MD) simulations were used to investigate the protein atom's dynamic motion. D. innoxia has a relatively higher inhibitory effect on oviposition (from 9.81% to 45.37%) and total larval mortality (42.33% at 24 h and 93.67% at 48 h) at 40 mg/mL. Moreover, the docking results showed that the chemicals norapoatropine and 7-Hydroxyhyoscyamine have strong interactions with active site residues of the target protein, with a docking score of −7.3 and −7.0 Kcal/mol, respectively. The current work also provided a computational basis for the inhibitors of Glutathione S-transferases that were studied in this research work, and this new knowledge should aid in creating new and effective acaricidal chemicals. Furthermore, this plant extract's acaricide activity and its effect on oviposition and larval mortality were established in this work for the first time, indicating the possible use of this extract in the management of ticks. [ABSTRACT FROM AUTHOR]
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- 2023
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