497 results on '"Chen-Plotkin AS"'
Search Results
2. Biomarker discovery in progressive supranuclear palsy from human cerebrospinal fluid
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Jang, Yura, Oh, Sungtaek, Hall, Anna J., Zhang, Zhen, Tropea, Thomas F., Chen-Plotkin, Alice, Rosenthal, Liana S., Dawson, Ted M., Na, Chan Hyun, and Pantelyat, Alexander Y.
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- 2024
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3. Network proteomics of the Lewy body dementia brain reveals presynaptic signatures distinct from Alzheimer’s disease
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Shantaraman, Anantharaman, Dammer, Eric B., Ugochukwu, Obiadada, Duong, Duc M., Yin, Luming, Carter, E. Kathleen, Gearing, Marla, Chen-Plotkin, Alice, Lee, Edward B., Trojanowski, John Q., Bennett, David A., Lah, James J., Levey, Allan I., Seyfried, Nicholas T., and Higginbotham, Lenora
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- 2024
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4. Genetic and phenotypic characterization of Parkinson’s disease at the clinic-wide level
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Tropea, Thomas F., Hartstone, Whitney, Amari, Noor, Baum, Dylan, Rick, Jacqueline, Suh, Eunran, Zhang, Hanwen, Paul, Rachel A., Han, Noah, Zack, Rebecca, Brody, Eliza M., Albuja, Isabela, James, Justin, Spindler, Meredith, Deik, Andres, Aamodt, Whitley W., Dahodwala, Nabila, Hamedani, Ali, Lasker, Aaron, Hurtig, Howard, Stern, Matthew, Weintraub, Daniel, Vaswani, Pavan, Willis, Allison W., Siderowf, Andrew, Xie, Sharon X., Van Deerlin, Vivianna, and Chen-Plotkin, Alice S.
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- 2024
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5. Network proteomics of the Lewy body dementia brain reveals presynaptic signatures distinct from Alzheimer’s disease
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Anantharaman Shantaraman, Eric B. Dammer, Obiadada Ugochukwu, Duc M. Duong, Luming Yin, E. Kathleen Carter, Marla Gearing, Alice Chen-Plotkin, Edward B. Lee, John Q. Trojanowski, David A. Bennett, James J. Lah, Allan I. Levey, Nicholas T. Seyfried, and Lenora Higginbotham
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Lewy body dementia ,Biomarkers ,Proteomics ,Mass spectrometry ,Neurology. Diseases of the nervous system ,RC346-429 ,Geriatrics ,RC952-954.6 - Abstract
Abstract Lewy body dementia (LBD), a class of disorders comprising Parkinson’s disease dementia (PDD) and dementia with Lewy bodies (DLB), features substantial clinical and pathological overlap with Alzheimer’s disease (AD). The identification of biomarkers unique to LBD pathophysiology could meaningfully advance its diagnosis, monitoring, and treatment. Using quantitative mass spectrometry (MS), we measured over 9,000 proteins across 138 dorsolateral prefrontal cortex (DLPFC) tissues from a University of Pennsylvania autopsy collection comprising control, Parkinson’s disease (PD), PDD, and DLB diagnoses. We then analyzed co-expression network protein alterations in those with LBD, validated these disease signatures in two independent LBD datasets, and compared these findings to those observed in network analyses of AD cases. The LBD network revealed numerous groups or “modules” of co-expressed proteins significantly altered in PDD and DLB, representing synaptic, metabolic, and inflammatory pathophysiology. A comparison of validated LBD signatures to those of AD identified distinct differences between the two diseases. Notably, synuclein-associated presynaptic modules were elevated in LBD but decreased in AD relative to controls. We also found that glial-associated matrisome signatures consistently elevated in AD were more variably altered in LBD, ultimately stratifying those LBD cases with low versus high burdens of concurrent beta-amyloid deposition. In conclusion, unbiased network proteomic analysis revealed diverse pathophysiological changes in the LBD frontal cortex distinct from alterations in AD. These results highlight the LBD brain network proteome as a promising source of biomarkers that could enhance clinical recognition and management.
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- 2024
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6. Genetic and phenotypic characterization of Parkinson’s disease at the clinic-wide level
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Thomas F. Tropea, Whitney Hartstone, Noor Amari, Dylan Baum, Jacqueline Rick, Eunran Suh, Hanwen Zhang, Rachel A. Paul, Noah Han, Rebecca Zack, Eliza M. Brody, Isabela Albuja, Justin James, Meredith Spindler, Andres Deik, Whitley W. Aamodt, Nabila Dahodwala, Ali Hamedani, Aaron Lasker, Howard Hurtig, Matthew Stern, Daniel Weintraub, Pavan Vaswani, Allison W. Willis, Andrew Siderowf, Sharon X. Xie, Vivianna Van Deerlin, and Alice S. Chen-Plotkin
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Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Observational studies in Parkinson’s disease (PD) deeply characterize relatively small numbers of participants. The Molecular Integration in Neurological Diagnosis Initiative seeks to characterize molecular and clinical features of every PD patient at the University of Pennsylvania (UPenn). The objectives of this study are to determine the feasibility of genetic characterization in PD and assess clinical features by sex and GBA1/LRRK2 status on a clinic-wide scale. All PD patients with clinical visits at the UPenn PD Center between 9/2018 and 12/2022 were eligible. Blood or saliva were collected, and a clinical questionnaire administered. Genotyping at 14 GBA1 and 8 LRRK2 variants was performed. PD symptoms were compared by sex and gene groups. 2063 patients were approached and 1,689 (82%) were enrolled, with 374 (18%) declining to participate. 608 (36%) females were enrolled, 159 (9%) carried a GBA1 variant, and 44 (3%) carried a LRRK2 variant. Compared with males, females across gene groups more frequently reported dystonia (53% vs 46%, p = 0.01) and anxiety (64% vs 55%, p
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- 2024
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7. Tau maturation in the clinicopathological spectrum of Lewy body and Alzheimer's disease
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Sanaz Arezoumandan, Katheryn A.Q. Cousins, Daniel T. Ohm, MaKayla Lowe, Min Chen, James Gee, Jeffrey S. Phillips, Corey T. McMillan, Kelvin C. Luk, Andres Deik, Meredith A. Spindler, Thomas F. Tropea, Daniel Weintraub, David A. Wolk, Murray Grossman, Virginia Lee, Alice S. Chen‐Plotkin, Edward B. Lee, and David J. Irwin
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Objective Alzheimer's disease neuropathologic change and alpha‐synucleinopathy commonly co‐exist and contribute to the clinical heterogeneity of dementia. Here, we examined tau epitopes marking various stages of tangle maturation to test the hypotheses that tau maturation is more strongly associated with beta‐amyloid compared to alpha‐synuclein, and within the context of mixed pathology, mature tau is linked to Alzheimer's disease clinical phenotype and negatively associated with Lewy body dementia. Methods We used digital histology to measure percent area‐occupied by pathology in cortical regions among individuals with pure Alzheimer's disease neuropathologic change, pure alpha‐synucleinopathy, and a co‐pathology group with both Alzheimer's and alpha‐synuclein pathologic diagnoses. Multiple tau monoclonal antibodies were used to detect early (AT8, MC1) and mature (TauC3) epitopes of tangle progression. We used linear/logistic regression to compare groups and test the association between pathologies and clinical features. Results There were lower levels of tau pathology (β = 1.86–2.96, p
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- 2024
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8. Correction: Network proteomics of the Lewy body dementia brain reveals presynaptic signatures distinct from Alzheimer’s disease
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Anantharaman Shantaraman, Eric B. Dammer, Obiadada Ugochukwu, Duc M. Duong, Luming Yin, E. Kathleen Carter, Marla Gearing, Alice Chen-Plotkin, Edward B. Lee, John Q. Trojanowski, David A. Bennett, James J. Lah, Allan I. Levey, Nicholas T. Seyfried, and Lenora Higginbotham
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Neurology. Diseases of the nervous system ,RC346-429 ,Geriatrics ,RC952-954.6 - Published
- 2024
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9. CSF proteome profiling reveals biomarkers to discriminate dementia with Lewy bodies from Alzheimer´s disease
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Marta del Campo, Lisa Vermunt, Carel F. W. Peeters, Anne Sieben, Yanaika S. Hok-A-Hin, Alberto Lleó, Daniel Alcolea, Mirrelijn van Nee, Sebastiaan Engelborghs, Juliette L. van Alphen, Sanaz Arezoumandan, Alice Chen-Plotkin, David J. Irwin, Wiesje M. van der Flier, Afina W. Lemstra, and Charlotte E. Teunissen
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Science - Abstract
Abstract Diagnosis of dementia with Lewy bodies (DLB) is challenging and specific biofluid biomarkers are highly needed. We employed proximity extension-based assays to measure 665 proteins in the cerebrospinal fluid (CSF) from patients with DLB (n = 109), Alzheimer´s disease (AD, n = 235) and cognitively unimpaired controls (n = 190). We identified over 50 CSF proteins dysregulated in DLB, enriched in myelination processes among others. The dopamine biosynthesis enzyme DDC was the strongest dysregulated protein, and could efficiently discriminate DLB from controls and AD (AUC:0.91 and 0.81 respectively). Classification modeling unveiled a 7-CSF biomarker panel that better discriminate DLB from AD (AUC:0.93). A custom multiplex panel for six of these markers (DDC, CRH, MMP-3, ABL1, MMP-10, THOP1) was developed and validated in independent cohorts, including an AD and DLB autopsy cohort. This DLB CSF proteome study identifies DLB-specific protein changes and translates these findings to a practicable biomarker panel that accurately identifies DLB patients, providing promising diagnostic and clinical trial testing opportunities.
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- 2023
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10. CSF proteome profiling reveals biomarkers to discriminate dementia with Lewy bodies from Alzheimer´s disease
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del Campo, Marta, Vermunt, Lisa, Peeters, Carel F. W., Sieben, Anne, Hok-A-Hin, Yanaika S., Lleó, Alberto, Alcolea, Daniel, van Nee, Mirrelijn, Engelborghs, Sebastiaan, van Alphen, Juliette L., Arezoumandan, Sanaz, Chen-Plotkin, Alice, Irwin, David J., van der Flier, Wiesje M., Lemstra, Afina W., and Teunissen, Charlotte E.
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- 2023
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11. Plasma GFAP associates with secondary Alzheimer's pathology in Lewy body disease
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Katheryn A. Q. Cousins, David J. Irwin, Alice Chen‐Plotkin, Leslie M. Shaw, Sanaz Arezoumandan, Edward B. Lee, David A. Wolk, Daniel Weintraub, Meredith Spindler, Andres Deik, Murray Grossman, and Thomas F. Tropea
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Objective Within Lewy body spectrum disorders (LBSD) with α‐synuclein pathology (αSyn), concomitant Alzheimer's disease (AD) pathology is common and is predictive of clinical outcomes, including cognitive impairment and decline. Plasma phosphorylated tau 181 (p‐tau181) is sensitive to AD neuropathologic change (ADNC) in clinical AD, and plasma glial fibrillary acidic protein (GFAP) is associated with the presence of β‐amyloid plaques. While these plasma biomarkers are well tested in clinical and pathological AD, their diagnostic and prognostic performance for concomitant AD in LBSD is unknown. Methods In autopsy‐confirmed αSyn‐positive LBSD, we tested how plasma p‐tau181 and GFAP differed across αSyn with concomitant ADNC (αSyn+AD; n = 19) and αSyn without AD (αSyn; n = 30). Severity of burden was scored on a semiquantitative scale for several pathologies (e.g., β‐amyloid and tau), and scores were averaged across sampled brainstem, limbic, and neocortical regions. Results Linear models showed that plasma GFAP was significantly higher in αSyn+AD compared to αSyn (β = 0.31, 95% CI = 0.065–0.56, and P = 0.015), after covarying for age at plasma, plasma‐to‐death interval, and sex; plasma p‐tau181 was not (P = 0.37). Next, linear models tested associations of AD pathological features with both plasma analytes, covarying for plasma‐to‐death, age at plasma, and sex. GFAP was significantly associated with brain β‐amyloid (β = 15, 95% CI = 6.1–25, and P = 0.0018) and tau burden (β = 12, 95% CI = 2.5–22, and P = 0.015); plasma p‐tau181 was not associated with either (both P > 0.34). Interpretation Findings indicate that plasma GFAP may be sensitive to concomitant AD pathology in LBSD, especially accumulation of β‐amyloid plaques.
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- 2023
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12. Testing for Allele-specific Expression from Human Brain Samples
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Maria Diaz-Ortiz, Nimansha Jain, Michael Gallagher, Marijan Posavi, Travis Unger, and Alice Chen-Plotkin
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Biology (General) ,QH301-705.5 - Abstract
Many single nucleotide polymorphisms (SNPs) identified by genome-wide association studies exert their effects on disease risk as expression quantitative trait loci (eQTL) via allele-specific expression (ASE). While databases for probing eQTLs in tissues from normal individuals exist, one may wish to ascertain eQTLs or ASE in specific tissues or disease-states not characterized in these databases. Here, we present a protocol to assess ASE of two possible target genes (GPNMB and KLHL7) of a known genome-wide association study (GWAS) Parkinson’s disease (PD) risk locus in postmortem human brain tissue from PD and neurologically normal individuals. This was done using a sequence of RNA isolation, cDNA library generation, enrichment for transcripts of interest using customizable cDNA capture probes, paired-end RNA sequencing, and subsequent analysis. This method provides increased sensitivity relative to traditional bulk RNAseq-based and a blueprint that can be extended to the study of other genes, tissues, and disease states.Key features• Analysis of GPNMB allele-specific expression (ASE) in brain lysates from cognitively normal controls (NC) and Parkinson’s disease (PD) individuals.• Builds on the ASE protocol of Mayba et al. (2014) and extends application from cells to human tissue.• Increased sensitivity by enrichment for desired transcript via RNA CaptureSeq (Mercer et al., 2014).• Optimized for human brain lysates from cingulate gyrus, caudate nucleus, and cerebellum.Graphical overview
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- 2023
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13. Plasma phosphorylated tau181 predicts cognitive and functional decline
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Thomas F. Tropea, Teresa Waligorska, Sharon X. Xie, Ilya M. Nasrallah, Katheryn A. Q. Cousins, John Q. Trojanowski, Murray Grossman, David J. Irwin, Daniel Weintraub, Edward B. Lee, David A. Wolk, Alice S. Chen‐Plotkin, Leslie M. Shaw, and the Alzheimer's Disease Neuroimaging Initiative
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Objective To determine if plasma tau phosphorylated at threonine 181 (p‐tau181) distinguishes pathology‐confirmed Alzheimer's disease (AD) from normal cognition (NC) adults, to test if p‐tau181 predicts cognitive and functional decline, and to validate findings in an external cohort. Methods Thirty‐one neuropathology‐confirmed AD cases, participants with clinical diagnoses of mild cognitive impairment (MCI, N = 91) or AD dementia (N = 64), and NC (N = 241) had plasma collected at study entry. The clinical diagnosis groups had annual cognitive (Mini‐Mental State Examination, MMSE) and functional (Clinical Dementia Rating Scale, CDR) measures. NC (N = 70), MCI (N = 75), and AD dementia (N = 50) cases from the Alzheimer's Disease Neuroimaging Initiative (ADNI) were used as a validation cohort. Plasma p‐tau181 was measured using the Quanterix SiMoA HD‐X platform. Results Plasma p‐tau181 differentiated pathology‐confirmed AD from NC with negative amyloid PET scans with an AUC of 0.93. A cut point of 3.44 pg/mL (maximum Youden Index) had a sensitivity of 0.77, specificity of 0.96. p‐Tau181 values above the cut point were associated with the faster rate of decline in MMSE in AD dementia and MCI and a shorter time to a clinically significant functional decline in all groups. In a subset of MCI cases from ADNI, p‐tau181 values above the cut point associated with faster rate of decline in MMSE, and a shorter time to a clinically significant functional decline and conversion to dementia. Interpretation Plasma p‐tau181 differentiates AD pathology cases from NC with high accuracy. Higher levels of plasma p‐tau181 are associated with faster cognitive and functional decline.
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- 2023
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14. Cognitive heterogeneity in Parkinson’s disease: A mechanistic view
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Carceles-Cordon, Marc, Weintraub, Dan, and Chen-Plotkin, Alice S.
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- 2023
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15. Gasdermin-E mediates mitochondrial damage in axons and neurodegeneration
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Neel, Dylan V., Basu, Himanish, Gunner, Georgia, Bergstresser, Matthew D., Giadone, Richard M., Chung, Haeji, Miao, Rui, Chou, Vicky, Brody, Eliza, Jiang, Xin, Lee, Edward, Watts, Michelle E., Marques, Christine, Held, Aaron, Wainger, Brian, Lagier-Tourenne, Clotilde, Zhang, Yong-Jie, Petrucelli, Leonard, Young-Pearse, Tracy L., Chen-Plotkin, Alice S., Rubin, Lee L., Lieberman, Judy, and Chiu, Isaac M.
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- 2023
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16. CSF proteome profiling across the Alzheimer’s disease spectrum reflects the multifactorial nature of the disease and identifies specific biomarker panels
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del Campo, Marta, Peeters, Carel F. W., Johnson, Erik C. B., Vermunt, Lisa, Hok-A-Hin, Yanaika S., van Nee, Mirrelijn, Chen-Plotkin, Alice, Irwin, David J., Hu, William T., Lah, James J., Seyfried, Nicholas T., Dammer, Eric B., Herradon, Gonzalo, Meeter, Lieke H., van Swieten, John, Alcolea, Daniel, Lleó, Alberto, Levey, Allan I., Lemstra, Afina W., Pijnenburg, Yolande A. L., Visser, Pieter J., Tijms, Betty M., van der Flier, Wiesje M., and Teunissen, Charlotte E.
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- 2022
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17. Genetic prediction of impulse control disorders in Parkinson's disease
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Daniel Weintraub, Marijan Posavi, Pierre Fontanillas, Thomas F. Tropea, Eugenia Mamikonyan, Eunran Suh, John Q. Trojanowski, Paul Cannon, Vivianna M. Van Deerlin, andMe Research Team, and Alice S. Chen‐Plotkin
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Objective To develop a clinico‐genetic predictor of impulse control disorder (ICD) risk in Parkinson's disease (PD). Methods In 5770 individuals from three PD cohorts (the 23andMe, Inc.; the University of Pennsylvania [UPenn]; and the Parkinson's Progression Markers Initiative [PPMI]), we used a discovery‐replication strategy to develop a clinico‐genetic predictor for ICD risk. We first performed a Genomewide Association Study (GWAS) for ICDs anytime during PD in 5262 PD individuals from the 23andMe cohort. We then combined newly discovered ICD risk loci with 13 ICD risk loci previously reported in the literature to develop a model predicting ICD in a Training dataset (n = 339, from UPenn and PPMI cohorts). The model was tested in a non‐overlapping Test dataset (n = 169, from UPenn and PPMI cohorts) and used to derive a continuous measure, the ICD‐risk score (ICD‐RS), enriching for PD individuals with ICD (ICD+ PD). Results By GWAS, we discovered four new loci associated with ICD at p‐values of 4.9e‐07 to 1.3e‐06. Our best logistic regression model included seven clinical and two genetic variables, achieving an area under the receiver operating curve for ICD prediction of 0.75 in the Training and 0.72 in the Test dataset. The ICD‐RS separated groups of PD individuals with ICD prevalence of nearly 40% (highest risk quartile) versus 7% (lowest risk quartile). Interpretation In this multi‐cohort, international study, we developed an easily computed clinico‐genetic tool, the ICD‐RS, that substantially enriches for subgroups of PD at very high versus very low risk for ICD, enabling pharmacogenetic approaches to PD medication selection.
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- 2022
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18. Immune aging in multiple sclerosis is characterized by abnormal CD4 T cell activation and increased frequencies of cytotoxic CD4 T cells with advancing age
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Zuroff, Leah, Rezk, Ayman, Shinoda, Koji, Espinoza, Diego A., Elyahu, Yehezqel, Zhang, Bo, Chen, Andrew A., Shinohara, Russell T., Jacobs, Dina, Alcalay, Roy N., Tropea, Thomas F., Chen-Plotkin, Alice, Monsonego, Alon, Li, Rui, and Bar-Or, Amit
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- 2022
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19. Quantitative detection of α-Synuclein and Tau oligomers and other aggregates by digital single particle counting
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Lara Blömeke, Marlene Pils, Victoria Kraemer-Schulien, Alexandra Dybala, Anja Schaffrath, Andreas Kulawik, Fabian Rehn, Anneliese Cousin, Volker Nischwitz, Johannes Willbold, Rebecca Zack, Thomas F. Tropea, Tuyen Bujnicki, Gültekin Tamgüney, Daniel Weintraub, David Irwin, Murray Grossman, David A. Wolk, John Q. Trojanowski, Oliver Bannach, Alice Chen-Plotkin, and Dieter Willbold
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Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract The pathological hallmark of neurodegenerative diseases is the formation of toxic oligomers by proteins such as alpha-synuclein (aSyn) or microtubule-associated protein tau (Tau). Consequently, such oligomers are promising biomarker candidates for diagnostics as well as drug development. However, measuring oligomers and other aggregates in human biofluids is still challenging as extreme sensitivity and specificity are required. We previously developed surface-based fluorescence intensity distribution analysis (sFIDA) featuring single-particle sensitivity and absolute specificity for aggregates. In this work, we measured aSyn and Tau aggregate concentrations of 237 cerebrospinal fluid (CSF) samples from five cohorts: Parkinson’s disease (PD), dementia with Lewy bodies (DLB), Alzheimer’s disease (AD), progressive supranuclear palsy (PSP), and a neurologically-normal control group. aSyn aggregate concentration discriminates PD and DLB patients from normal controls (sensitivity 73%, specificity 65%, area under the receiver operating curve (AUC) 0.68). Tau aggregates were significantly elevated in PSP patients compared to all other groups (sensitivity 87%, specificity 70%, AUC 0.76). Further, we found a tight correlation between aSyn and Tau aggregate titers among all patient cohorts (Pearson coefficient of correlation r = 0.81). Our results demonstrate that aSyn and Tau aggregate concentrations measured by sFIDA differentiate neurodegenerative disease diagnostic groups. Moreover, sFIDA-based Tau aggregate measurements might be particularly useful in distinguishing PSP from other parkinsonisms. Finally, our findings suggest that sFIDA can improve pre-clinical and clinical studies by identifying those individuals that will most likely respond to compounds designed to eliminate specific oligomers or to prevent their formation.
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- 2022
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20. Multimarker synaptic protein cerebrospinal fluid panels reflect TDP-43 pathology and cognitive performance in a pathological cohort of frontotemporal lobar degeneration
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Alba Cervantes González, David J. Irwin, Daniel Alcolea, Corey T. McMillan, Alice Chen-Plotkin, David Wolk, Sònia Sirisi, Oriol Dols-Icardo, Marta Querol-Vilaseca, Ignacio Illán-Gala, Miguel Angel Santos-Santos, Juan Fortea, Edward B. Lee, John Q. Trojanowski, Murray Grossman, Alberto Lleó, and Olivia Belbin
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Calsyntenin-1 ,Frontotemporal lobar degeneration ,Frontotemporal dementia ,Cerebrospinal fluid ,Biomarker ,TDP-43 ,Neurology. Diseases of the nervous system ,RC346-429 ,Geriatrics ,RC952-954.6 - Abstract
Abstract Background Synapse degeneration is an early event in pathological frontotemporal lobar degeneration (FTLD). Consequently, a surrogate marker of synapse loss could be used to monitor early pathologic changes in patients with underlying FTLD. The aim of this study was to evaluate the relationship of antemortem cerebrospinal fluid (CSF) levels of 8 synaptic proteins with postmortem global tau and TDP-43 burden and cognitive performance and to assess their diagnostic capacity in a neuropathological FTLD cohort. Methods We included patients with a neuropathological confirmation of FTLD-Tau (n = 24, mean age-at-CSF 67 years ± 11), FTLD-TDP (n = 25, 66 years ± 9) or AD (n = 25, 73 years ± 6) as well as cognitively normal controls (n = 35, 69 years ± 7) from the Penn FTD Center and ADRC. We used a semi-quantitative measure of tau and TDP-43 inclusions to quantify pathological burden across 16 brain regions. Statistical methods included Spearman rank correlations, one-way analysis of covariance, ordinal regression, step-wise multiple linear regression and receiver-operating characteristic curves. Result CSF calsyntenin-1 and neurexin-2a were correlated in all patient groups (r s = .55 to .88). In FTLD-TDP, we observed low antemortem CSF levels of calsyntenin-1 and neurexin-2a compared to AD (.72-fold, p = .001, .77-fold, p = .04, respectively) and controls (.80-fold, p = .02, .78-fold, p = .02, respectively), which were inversely associated with post-mortem global TDP-43 burden (regression r 2 = .56, p = .007 and r 2 = .57, p = .006, respectively). A multimarker panel including calsyntenin-1 was associated with TDP-43 burden (r 2 = .69, p = .003) and MMSE score (r 2 = .19, p = .03) in FTLD. A second multimarker synaptic panel, also including calsyntenin-1, was associated with MMSE score in FTLD-tau (r 2 = .49, p = .04) and improved diagnostic performance to discriminate FTLD-Tau and FTLD-TDP neuropathologic subtypes (AUC = .83). Conclusion These synaptic panels have potential in the differential diagnosis of FTLD neuropathologic subtypes and as surrogate markers of cognitive performance in future clinical trials targeting TDP-43 or tau.
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- 2022
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21. Connecting dementia risk loci to the CSF proteome identifies pathophysiological leads for dementia.
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Reus, Lianne M, Jansen, Iris E, Tijms, Betty M, Visser, Pieter Jelle, Tesi, Niccoló, Lee, Sven J van der, Vermunt, Lisa, Peeters, Carel F W, Groot, Lisa A De, Hok-A-Hin, Yanaika S, Chen-Plotkin, Alice, Irwin, David J, Hu, William T, Meeter, Lieke H, Swieten, John C van, Holstege, Henne, Hulsman, Marc, Lemstra, Afina W, Pijnenburg, Yolande A L, and Flier, Wiesje M van der
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LEWY body dementia ,FRONTOTEMPORAL dementia ,LOCUS (Genetics) ,ALZHEIMER'S disease ,DISEASE risk factors - Abstract
Genome-wide association studies have successfully identified many genetic risk loci for dementia, but exact biological mechanisms through which genetic risk factors contribute to dementia remains unclear. Integrating CSF proteomic data with dementia risk loci could reveal intermediate molecular pathways connecting genetic variance to the development of dementia. We tested to what extent effects of known dementia risk loci can be observed in CSF levels of 665 proteins [proximity extension-based (PEA) immunoassays] in a deeply-phenotyped mixed memory clinic cohort [ n = 502, mean age (standard deviation, SD) = 64.1 (8.7) years, 181 female (35.4%)], including patients with Alzheimer's disease (AD, n = 213), dementia with Lewy bodies (DLB, n = 50) and frontotemporal dementia (FTD, n = 93), and controls (n = 146). Validation was assessed in independent cohorts (n = 99 PEA platform, n = 198, mass reaction monitoring-targeted mass spectroscopy and multiplex assay). We performed additional analyses stratified according to diagnostic status (AD, DLB, FTD and controls separately), to explore whether associations between CSF proteins and genetic variants were specific to disease or not. We identified four AD risk loci as protein quantitative trait loci (pQTL): CR1 -CR2 (rs3818361, P = 1.65 × 10
−8 ), ZCWPW1 -PILRB (rs1476679, P = 2.73 × 10−32 ), CTSH -CTSH (rs3784539, P = 2.88 × 10−24 ) and HESX1 -RETN (rs186108507, P = 8.39 × 10−8 ), of which the first three pQTLs showed direct replication in the independent cohorts. We identified one AD-specific association between a rare genetic variant of TREM2 and CSF IL6 levels (rs75932628, P = 3.90 × 10−7 ). DLB risk locus GBA showed positive trans effects on seven inter-related CSF levels in DLB patients only. No pQTLs were identified for FTD loci, either for the total sample as for analyses performed within FTD only. Protein QTL variants were involved in the immune system, highlighting the importance of this system in the pathophysiology of dementia. We further identified pQTLs in stratified analyses for AD and DLB, hinting at disease-specific pQTLs in dementia. Dissecting the contribution of risk loci to neurobiological processes aids in understanding disease mechanisms underlying dementia. [ABSTRACT FROM AUTHOR]- Published
- 2024
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22. Multimarker synaptic protein cerebrospinal fluid panels reflect TDP-43 pathology and cognitive performance in a pathological cohort of frontotemporal lobar degeneration
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Cervantes González, Alba, Irwin, David J., Alcolea, Daniel, McMillan, Corey T., Chen-Plotkin, Alice, Wolk, David, Sirisi, Sònia, Dols-Icardo, Oriol, Querol-Vilaseca, Marta, Illán-Gala, Ignacio, Santos-Santos, Miguel Angel, Fortea, Juan, Lee, Edward B., Trojanowski, John Q., Grossman, Murray, Lleó, Alberto, and Belbin, Olivia
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- 2022
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23. Quantitative detection of α-Synuclein and Tau oligomers and other aggregates by digital single particle counting
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Blömeke, Lara, Pils, Marlene, Kraemer-Schulien, Victoria, Dybala, Alexandra, Schaffrath, Anja, Kulawik, Andreas, Rehn, Fabian, Cousin, Anneliese, Nischwitz, Volker, Willbold, Johannes, Zack, Rebecca, Tropea, Thomas F., Bujnicki, Tuyen, Tamgüney, Gültekin, Weintraub, Daniel, Irwin, David, Grossman, Murray, Wolk, David A., Trojanowski, John Q., Bannach, Oliver, Chen-Plotkin, Alice, and Willbold, Dieter
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- 2022
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24. TMEM106B modifies TDP-43 pathology in human ALS brain and cell-based models of TDP-43 proteinopathy
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Mao, Fei, Robinson, John L., Unger, Travis, Posavi, Marijan, Amado, Defne A., Elman, Lauren, Grossman, Murray, Wolk, David A., Lee, Edward B., Van Deerlin, Vivianna M., Porta, Sílvia, Lee, Virginia M. Y., Trojanowski, John Q., and Chen-Plotkin, Alice S.
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- 2021
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25. Immune aging in multiple sclerosis is characterized by abnormal CD4 T cell activation and increased frequencies of cytotoxic CD4 T cells with advancing age
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Leah Zuroff, Ayman Rezk, Koji Shinoda, Diego A. Espinoza, Yehezqel Elyahu, Bo Zhang, Andrew A. Chen, Russell T. Shinohara, Dina Jacobs, Roy N. Alcalay, Thomas F. Tropea, Alice Chen-Plotkin, Alon Monsonego, Rui Li, and Amit Bar-Or
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Immunosenescence ,Multiple sclerosis ,Aging ,T lymphocytes ,Medicine ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Immunosenescence (ISC) describes age-related changes in immune-system composition and function. Multiple sclerosis (MS) is a lifelong inflammatory condition involving effector and regulatory T-cell imbalance, yet little is known about T-cell ISC in MS. We examined age-associated changes in circulating T cells in MS compared to normal controls (NC). Methods: Forty untreated MS (Mean Age 43·3, Range 18–72) and 49 NC (Mean Age 48·6, Range 20–84) without inflammatory conditions were included in cross-sectional design. T-cell subsets were phenotypically and functionally characterized using validated multiparametric flow cytometry. Their aging trajectories, and differences between MS and NC, were determined using linear mixed-effects models. Findings: MS patients demonstrated early and persistent redistribution of naïve and memory CD4 T-cell compartments. While most CD4 and CD8 T-cell aging trajectories were similar between groups, MS patients exhibited abnormal age-associated increases of activated (HLA-DR+CD38+; (P = 0·013) and cytotoxic CD4 T cells, particularly in patients >60 (EOMES: P
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- 2022
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26. L1CAM is not associated with extracellular vesicles in human cerebrospinal fluid or plasma
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Norman, Maia, Ter-Ovanesyan, Dmitry, Trieu, Wendy, Lazarovits, Roey, Kowal, Emma J. K., Lee, Ju Hyun, Chen-Plotkin, Alice S., Regev, Aviv, Church, George M., and Walt, David R.
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- 2021
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27. Long-Term Dementia Risk in Parkinson Disease.
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Gallagher, Julia, Gochanour, Caroline, Caspell-Garcia, Chelsea, Dobkin, Roseanne D., Aarsland, Dag, Alcalay, Roy N., Barrett, Matthew J., Chahine, Lana, Chen-Plotkin, Alice S., Coffey, Christopher S., Dahodwala, Nabila, Eberling, Jamie L., Espay, Alberto J., Leverenz, James B., Litvan, Irene, Mamikonyan, Eugenia, Morley, James, Richard, Irene H., Rosenthal, Liana, and Siderowf, Andrew D.
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- 2024
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28. Omics in Neurodegenerative Disease: Hope or Hype?
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Diaz-Ortiz, Maria E. and Chen-Plotkin, Alice S.
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- 2020
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29. A growth-factor-activated lysosomal K+ channel regulates Parkinson’s pathology
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Wie, Jinhong, Liu, Zhenjiang, Song, Haikun, Tropea, Thomas F., Yang, Lu, Wang, Huanhuan, Liang, Yuling, Cang, Chunlei, Aranda, Kimberly, Lohmann, Joey, Yang, Jing, Lu, Boxun, Chen-Plotkin, Alice S., Luk, Kelvin C., and Ren, Dejian
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- 2021
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30. New York City COVID-19 resident physician exposure during exponential phase of pandemic
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Breazzano, Mark P., Shen, Junchao, Abdelhakim, Aliaa H., Glass, Lora R. Dagi, Horowitz, Jason D., Xie, Sharon X., de Moraes, C. Gustavo, Chen-Plotkin, Alice, and Chen, Royce W.S.
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Quarantine -- Health aspects -- Surveys ,Physicians -- Surveys ,Coronaviruses -- Health aspects -- Surveys ,COVID-19 -- Surveys -- Health aspects ,Health care industry ,University of Pennsylvania -- Officials and employees - Abstract
BACKGROUND. From March 2, 2020, to April 12, 2020, New York City (NYC) experienced exponential growth of the COVID-19 pandemic due to novel coronavirus (SARS-CoV-2). Little is known regarding how physicians have been affected. We aimed to characterize the COVID-19 impact on NYC resident physicians. METHODS. IRB-exempt and expedited cross-sectional analysis through survey to NYC residency program directors April 3-12, 2020, encompassing events from March 2, 2020, to April 12, 2020. RESULTS. From an estimated 340 residency programs around NYC, recruitment yielded 91 responses, representing 24 specialties and 2306 residents. In 45.1% of programs, at least 1 resident with confirmed COVID-19 was reported. One hundred one resident physicians were confirmed COVID-19-positive, with an additional 163 residents presumed positive for COVID-19 based on symptoms but awaiting or unable to obtain testing. Two COVID-19-positive residents were hospitalized, with 1 in intensive care. Among specialties with more than 100 residents represented, negative binomial regression indicated that infection risk differed by specialty (P = 0.039). In 80% of programs, quarantining a resident was reported. Ninety of 91 programs reported reuse or extended mask use, and 43 programs reported that personal protective equipment (PPE) was suboptimal. Sixty-five programs (74.7%) redeployed residents elsewhere to support COVID-19 efforts. CONCLUSION. Many resident physicians around NYC have been affected by COVID-19 through direct infection, quarantine, or redeployment. Lack of access to testing and concern regarding suboptimal PPE are common among residency programs. Infection risk may differ by specialty. FUNDING. National Eye Institute Core Grant P30EY019007; Research to Prevent Blindness Unrestricted Grant; Parker Family Chair; University of Pennsylvania., Introduction The United States is part of a global pandemic known as COVID-19 (1), which has characteristics that overlap with the Spanish flu of 1918. The causative novel coronavirus (2019-nCoV, [...]
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- 2020
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31. ADNC-RS, a clinical-genetic risk score, predicts Alzheimer’s pathology in autopsy-confirmed Parkinson’s disease and Dementia with Lewy bodies
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Dai, David L., Tropea, Thomas F., Robinson, John L., Suh, Eunran, Hurtig, Howard, Weintraub, Daniel, Van Deerlin, Vivianna, Lee, Edward B., Trojanowski, John Q., and Chen-Plotkin, Alice S.
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- 2020
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32. John Q. Trojanowski, ‘tour de force’ in neurodegeneration (1946–2022)
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Chen-Plotkin, Alice S.
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- 2022
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33. Abnormal B-Cell and Tfh-Cell Profiles in Patients With Parkinson Disease: A Cross-sectional Study
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Li, Rui, Tropea, Thomas Francis, Baratta, Laura Rosa, Zuroff, Leah, Diaz-Ortiz, Maria E., Zhang, Bo, Shinoda, Koji, Rezk, Ayman, Alcalay, Roy N., Chen-Plotkin, Alice, and Bar-Or, Amit
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- 2022
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34. AAV-Mediated Progranulin Delivery to a Mouse Model of Progranulin Deficiency Causes T Cell-Mediated Toxicity
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Amado, Defne A., Rieders, Julianne M., Diatta, Fortunay, Hernandez-Con, Pilar, Singer, Adina, Mak, Jordan T., Zhang, Junxian, Lancaster, Eric, Davidson, Beverly L., and Chen-Plotkin, Alice S.
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- 2019
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35. Elevated CSF GAP-43 is Alzheimer's disease specific and associated with tau and amyloid pathology
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Sandelius, Åsa, Portelius, Erik, Källén, Åsa, Zetterberg, Henrik, Rot, Uros, Olsson, Bob, Toledo, Jon B., Shaw, Leslie M., Lee, Virginia M.Y., Irwin, David J., Grossman, Murray, Weintraub, Daniel, Chen-Plotkin, Alice, Wolk, David A., McCluskey, Leo, Elman, Lauren, Kostanjevecki, Vesna, Vandijck, Manu, McBride, Jennifer, Trojanowski, John Q., and Blennow, Kaj
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- 2019
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36. Medial temporal lobe gray matter microstructure in preclinical Alzheimer's disease.
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Brown, Christopher, Das, Sandhitsu, Xie, Long, Nasrallah, Ilya, Detre, John, Chen‐Plotkin, Alice, Shaw, Leslie, McMillan, Corey, Yushkevich, Paul, and Wolk, David
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INTRODUCTION: Typical MRI measures of neurodegeneration have limited sensitivity in early disease stages. Diffusion MRI (dMRI) microstructural measures may allow for detection in preclinical stages. METHODS: Participants had dMRI and either beta‐amyloid PET or plasma biomarkers of Alzheimer's pathology within 18 months of MRI. Microstructure was measured in portions of the medial temporal lobe (MTL) with high neurofibrillary tangle (NFT) burden based on a previously developed post mortem 3D‐map. Regressions examined relationships between microstructure and markers of Alzheimer's pathology in preclinical disease and then across disease stages. RESULTS: There was higher isometric volume fraction in amyloid‐positive compared to amyloid‐negative cognitively unimpaired individuals in high tangle MTL regions. Similarly, plasma biomarkers and 18F‐flortaucipir were associated with microstructural changes in preclinical disease. Additional microstructural effects were seen across disease stages. DISCUSSION: Combining a post mortem atlas of NFT pathology with microstructural measures allows for detection of neurodegeneration in preclinical Alzheimer's disease. Highlights: Typical markers of neurodegeneration are not sensitive in preclinical Alzheimer's.dMRI measured microstructure in regions with high NFT.Microstructural changes occur in medial temporal regions in preclinical disease.Microstructural changes occur in other typical Alzheimer's regions in later stages.Combining post mortem pathology atlases with in vivo MRI is a powerful framework. [ABSTRACT FROM AUTHOR]
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- 2024
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37. Pathologic and cognitive correlates of plasma biomarkers in neurodegenerative disease.
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Cousins, Katheryn A. Q., Phillips, Jeffrey S., Das, Sandhitsu R., O'Brien, Kyra, Tropea, Thomas F., Chen‐Plotkin, Alice, Shaw, Leslie M., Nasrallah, Ilya M., Mechanic‐Hamilton, Dawn, McMillan, Corey T., Irwin, David J., Lee, Edward B., and Wolk, David A.
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INTRODUCTION: We investigate pathological correlates of plasma phosphorylated tau 181 (p‐tau181), glial fibrillary acidic protein (GFAP), and neurofilament light chain (NfL) across a clinically diverse spectrum of neurodegenerative disease, including normal cognition (NormCog) and impaired cognition (ImpCog). METHODS: Participants were NormCog (n = 132) and ImpCog (n = 461), with confirmed β‐amyloid (Aβ+/‐) status (cerebrospinal fluid, positron emission tomography, autopsy) and single molecule array plasma measurements. Logistic regression and receiver operating characteristic (ROC) area under the curve (AUC) tested how combining plasma analytes discriminated Aβ+ from Aβ‐. Survival analyses tested time to clinical dementia rating (global CDR) progression. RESULTS: Multivariable models (p‐tau+GFAP+NfL) had the best performance to detect Aβ+ in NormCog (ROCAUC = 0.87) and ImpCog (ROCAUC = 0.87). Survival analyses demonstrated that higher NfL best predicted faster CDR progression for both Aβ+ (hazard ratio [HR] = 2.94; p = 8.1e‐06) and Aβ‐ individuals (HR = 3.11; p = 2.6e‐09). DISCUSSION: Combining plasma biomarkers can optimize detection of Alzheimer's disease (AD) pathology across cognitively normal and clinically diverse neurodegenerative disease. Highlights: Participants were clinically heterogeneous, with autopsy‐ or biomarker‐confirmed Aβ.Combining plasma p‐tau181, GFAP, and NfL improved diagnostic accuracy for Aβ status.Diagnosis by plasma biomarkers is more accurate in amnestic AD than nonamnestic AD.Plasma analytes show independent associations with tau PET and post mortem Aβ/tau.Plasma NfL predicted longitudinal cognitive decline in both Aβ+ and Aβ‐ individuals. [ABSTRACT FROM AUTHOR]
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- 2024
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38. GPNMB Biomarker Levels in GBA1 Carriers with Lewy Body Disorders.
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Brody, Eliza M., Seo, Yunji, Suh, EunRan, Amari, Noor, Hartstone, Whitney G., Skrinak, R. Tyler, Zhang, Hanwen, Diaz‐Ortiz, Maria E., Weintraub, Daniel, Tropea, Thomas F., Van Deerlin, Vivianna M., and Chen‐Plotkin, Alice S.
- Abstract
Background: The GPNMB single‐nucleotide polymorphism rs199347 and GBA1 variants both associate with Lewy body disorder (LBD) risk. GPNMB encodes glycoprotein nonmetastatic melanoma protein B (GPNMB), a biomarker for GBA1‐associated Gaucher's disease. Objective: The aim of this study was to determine whether GPNMB levels (1) differ in LBD with and without GBA1 variants and (2) associate with rs199347 genotype. Methods: We quantified GPNMB levels in plasma and cerebrospinal fluid (CSF) from 124 individuals with LBD with one GBA1 variant (121 plasma, 14 CSF), 631 individuals with LBD without GBA1 variants (626 plasma, 41 CSF), 9 neurologically normal individuals with one GBA1 variant (plasma), and 2 individuals with two GBA1 variants (plasma). We tested for associations between GPNMB levels and rs199347 or GBA1 status. Results: GPNMB levels associate with rs199347 genotype in plasma (P = 0.022) and CSF (P = 0.007), but not with GBA1 status. Conclusions: rs199347 is a protein quantitative trait locus for GPNMB. GPNMB levels are unaltered in individuals carrying one GBA1 variant. © 2024 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society. [ABSTRACT FROM AUTHOR]
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- 2024
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39. Cerebrospinal fluid α-synuclein contributes to the differential diagnosis of Alzheimer's disease
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Shi, Min, Tang, Lu, Toledo, Jon B., Ginghina, Carmen, Wang, Hua, Aro, Patrick, Jensen, Poul H., Weintraub, Daniel, Chen-Plotkin, Alice S., Irwin, David J., Grossman, Murray, McCluskey, Leo, Elman, Lauren B., Wolk, David A., Lee, Edward B., Shaw, Leslie M., Trojanowski, John Q., and Zhang, Jing
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- 2018
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40. The Post-GWAS Era: From Association to Function
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Gallagher, Michael D. and Chen-Plotkin, Alice S.
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- 2018
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41. Unlocking the mystery of biomarkers: A brief introduction, challenges and opportunities in Parkinson Disease
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Tropea, Thomas F. and Chen-Plotkin, Alice S.
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- 2018
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42. Aberrant activation of non-coding RNA targets of transcriptional elongation complexes contributes to TDP-43 toxicity
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Chia-Yu Chung, Amit Berson, Jason R. Kennerdell, Ashley Sartoris, Travis Unger, Sílvia Porta, Hyung-Jun Kim, Edwin R. Smith, Ali Shilatifard, Vivianna Van Deerlin, Virginia M.-Y. Lee, Alice Chen-Plotkin, and Nancy M. Bonini
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Science - Abstract
TDP-43 is associated with amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration with ubiquitinated inclusions (FTD-TDP). Here, the authors identify the transcriptional elongation factor Ell as a strong modifier of TDP-43-mediated neurodegeneration through the Ell transcriptional elongation complexes LEC and SEC.
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- 2018
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43. A Dementia-Associated Risk Variant near TMEM106B Alters Chromatin Architecture and Gene Expression
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Gallagher, Michael D., Posavi, Marijan, Huang, Peng, Unger, Travis L., Berlyand, Yosef, Gruenewald, Analise L., Chesi, Alessandra, Manduchi, Elisabetta, Wells, Andrew D., Grant, Struan F.A., Blobel, Gerd A., Brown, Christopher D., and Chen-Plotkin, Alice S.
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- 2017
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44. Prediction of cognition in Parkinson's disease with a clinical–genetic score: a longitudinal analysis of nine cohorts
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Scherzer, Clemens R., Hyman, Bradley T., Ivinson, Adrian J., Trisini-Lipsanopoulos, Ana, Franco, Daly, Burke, Kyle, Sudarsky, Lewis R., Hayes, Michael T., Umeh, Chizoba C., Sperling, Reisa, Growdon, John H., Schwarzschild, Michael A., Hung, Albert Y., Flaherty, Alice W., Blacker, Deborah, Wills, Anne-Marie, Sohur, U. Shivraj, Mejia, Nicte I., Viswanathan, Anand, Gomperts, Stephen N., Khurana, Vikram, Albers, Mark W., Alora-Palli, Maria, McGinnis, Scott, Sharma, Nutan, Dickerson, Bradford, Frosch, Matthew, Gomez-Isla, Teresa, Greenberg, Steven, Gusella, James, Hedden, Trey, Hedley-Whyte, E Tessa, Koenig, Aaron, Marquis-Sayagues, Marta, Marshall, Gad, Okereke, Olivia, Stemmer-Rachaminov, Anat, Kloppenburg, Jessica, Schlossmacher, Michael G., Selkoe, Dennis J., Yi, Thomas, Locascio, Joseph J., Li, Haining, Stalberg, Gabriel, Liao, Zhixiang, Barker, Roger, Foltynie, Tom, Williams-Gray, Caroline, Robbins, Trevor, Brayne, Carol, Mason, Sarah, Winder-Rhodes, Sophie, Breen, David P, Cummins, Gemma, Evans, Jonathan, van Hilten, Jacobus J., Marinus, Johan, Corvol, Jean-Christophe, Brice, Alexis, Elbaz, Alexis, Mallet, Alain, Vidailhet, Marie, Bonnet, Anne-Marie, Bonnet, Cecilia, Grabli, David, Hartmann, Andreas, Klebe, Stephan, Lacomblez, Lucette, Mangone, Graziella, Bourdain, Frédéric, Brandel, Jean-Philippe, Derkinderen, Pascal, Durif, Franck, Mesnage, Valérie, Pico, Fernando, Rascol, Olivier, Brefel-Courbon, Christine, Ory-Magne, Fabienne, Forlani, Sylvie, Lesage, Suzanne, Tahiri, Khadija, Albin, Roger, Alcalay, Roy, Ascherio, Alberto, Bowman, Dubois, Chen-Plotkin, Alice, Dawson, Ted, Dewey, Richard, German, Dwight, Saunders-Pullman, Rachel, Scherzer, Clemens, Vaillancourt, David, Petyuk, Vladislav, West, Andy, Zhang, Jing, Liu, Ganqiang, Locascio, Joseph J, Boot, Brendon, Page, Kara, Jansen, Iris E, Tanner, Caroline M, Lang, Anthony E, Eberly, Shirley, Ravina, Bernard, Shoulson, Ira, Cormier-Dequaire, Florence, Heutink, Peter, van Hilten, Jacobus J, Barker, Roger A, Williams-Gray, Caroline H, and Scherzer, Clemens R
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- 2017
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45. Tau maturation in the clinicopathological spectrum of Lewy body and Alzheimer's disease.
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Arezoumandan, Sanaz, Cousins, Katheryn A.Q., Ohm, Daniel T., Lowe, MaKayla, Chen, Min, Gee, James, Phillips, Jeffrey S., McMillan, Corey T., Luk, Kelvin C., Deik, Andres, Spindler, Meredith A., Tropea, Thomas F., Weintraub, Daniel, Wolk, David A., Grossman, Murray, Lee, Virginia, Chen‐Plotkin, Alice S., Lee, Edward B., and Irwin, David J.
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ALZHEIMER'S disease ,LEWY body dementia ,TAU proteins ,CLINICAL pathology ,PURE red cell aplasia ,MONOCLONAL antibodies ,CHRONIC traumatic encephalopathy - Abstract
Objective: Alzheimer's disease neuropathologic change and alpha‐synucleinopathy commonly co‐exist and contribute to the clinical heterogeneity of dementia. Here, we examined tau epitopes marking various stages of tangle maturation to test the hypotheses that tau maturation is more strongly associated with beta‐amyloid compared to alpha‐synuclein, and within the context of mixed pathology, mature tau is linked to Alzheimer's disease clinical phenotype and negatively associated with Lewy body dementia. Methods: We used digital histology to measure percent area‐occupied by pathology in cortical regions among individuals with pure Alzheimer's disease neuropathologic change, pure alpha‐synucleinopathy, and a co‐pathology group with both Alzheimer's and alpha‐synuclein pathologic diagnoses. Multiple tau monoclonal antibodies were used to detect early (AT8, MC1) and mature (TauC3) epitopes of tangle progression. We used linear/logistic regression to compare groups and test the association between pathologies and clinical features. Results: There were lower levels of tau pathology (β = 1.86–2.96, p < 0.001) across all tau antibodies in the co‐pathology group compared to the pure Alzheimer's pathology group. Among individuals with alpha‐synucleinopathy, higher alpha‐synuclein was associated with greater early tau (AT8 β = 1.37, p < 0.001; MC1 β = 1.2, p < 0.001) but not mature tau (TauC3 p = 0.18), whereas mature tau was associated with beta‐amyloid (β = 0.21, p = 0.01). Finally, lower tau, particularly TauC3 pathology, was associated with lower frequency of both core clinical features and categorical clinical diagnosis of dementia with Lewy bodies. Interpretation: Mature tau may be more closely related to beta‐amyloidosis than alpha‐synucleinopathy, and pathophysiological processes of tangle maturation may influence the clinical features of dementia in mixed Lewy‐Alzheimer's pathology. [ABSTRACT FROM AUTHOR]
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- 2024
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46. Sex Hormone-Binding Globulin (SHBG) in Cerebrospinal Fluid Does Not Discriminate between the Main FTLD Pathological Subtypes but Correlates with Cognitive Decline in FTLD Tauopathies
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Marta del Campo, Yolande A. L. Pijnenburg, Alice Chen-Plotkin, David J. Irwin, Murray Grossman, Harry A. M. Twaalfhoven, William T. Hu, Lieke H. Meeter, John van Swieten, Lisa Vermunt, Frans Martens, Annemieke C. Heijboer, and Charlotte E. Teunissen
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CSF ,biomarkers ,FTLD-Tau ,FTLD-TDP ,Microbiology ,QR1-502 - Abstract
Biomarkers to discriminate the main pathologies underlying frontotemporal lobar degeneration (FTLD-Tau, FTLD-TDP) are lacking. Our previous FTLD cerebrospinal fluid (CSF) proteome study revealed that sex hormone-binding globulin (SHBG) was specifically increased in FTLD-Tau patients. Here we investigated the potential of CSF SHBG as a novel biomarker discriminating the main FTLD pathological subtypes. SHBG was measured in CSF samples from patients with FTLD-Tau (n = 23), FTLD-TDP (n = 29) and controls (n = 33) using an automated electro-chemiluminescent immunoassay. Differences in CSF SHBG levels across groups, as well as its association with CSF YKL40, pTau181/total-Tau ratio and cognitive function were analyzed. CSF SHBG did not differ across groups, though a trend towards elevated levels in FTLD-Tau cases compared to FTLD-TDP and controls was observed. CSF SHBG levels were not associated with either CSF YKL40 or the p/tTau ratio. They, however, inversely correlated with the MMSE score (r = −0.307, p = 0.011), an association likely driven by the FTLD-Tau group (r FTLD-Tau = −0.38; r FTLD-TDP = −0.02). CSF SHBG is not a suitable biomarker to discriminate FTLD-Tau from FTLD-TDP.
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- 2021
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47. Cerebrospinal fluid neurogranin concentration in neurodegeneration: relation to clinical phenotypes and neuropathology
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Portelius, Erik, Olsson, Bob, Höglund, Kina, Cullen, Nicholas C., Kvartsberg, Hlin, Andreasson, Ulf, Zetterberg, Henrik, Sandelius, Åsa, Shaw, Leslie M., Lee, Virginia M. Y., Irwin, David J., Grossman, Murray, Weintraub, Daniel, Chen-Plotkin, Alice, Wolk, David A., McCluskey, Leo, Elman, Lauren, McBride, Jennifer, Toledo, Jon B., Trojanowski, John Q., and Blennow, Kaj
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- 2018
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48. Genetic Modifiers in Neurodegeneration
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Jain, Nimansha and Chen-Plotkin, Alice S.
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- 2018
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49. Circulating brain-enriched microRNAs as novel biomarkers for detection and differentiation of neurodegenerative diseases
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Kira S. Sheinerman, Jon B. Toledo, Vladimir G. Tsivinsky, David Irwin, Murray Grossman, Daniel Weintraub, Howard I. Hurtig, Alice Chen-Plotkin, David A. Wolk, Leo F. McCluskey, Lauren B. Elman, John Q. Trojanowski, and Samuil R. Umansky
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Alzheimer’s disease ,Frontotemporal dementia ,Parkinson’s disease ,Amyotrophic lateral sclerosis ,microRNA ,Blood-based biomarkers ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background Minimally invasive specific biomarkers of neurodegenerative diseases (NDs) would facilitate patient selection and disease progression monitoring. We describe the assessment of circulating brain-enriched microRNAs as potential biomarkers for Alzheimer’s disease (AD), frontotemporal dementia (FTD), Parkinson’s disease (PD), and amyotrophic lateral sclerosis (ALS). Methods In this case-control study, the plasma samples were collected from 250 research participants with a clinical diagnosis of AD, FTD, PD, and ALS, as well as from age- and sex-matched control subjects (n = 50 for each group), recruited from 2003 to 2015 at the University of Pennsylvania Health System, including the Alzheimer’s Disease Center, the Parkinson’s Disease and Movement Disorders Center, the Frontotemporal Degeneration Center, and the Amyotrophic Lateral Sclerosis Clinic. Each group was randomly divided into training and confirmation sets of equal size. To evaluate the potential of circulating microRNAs enriched in specific brain regions affected by NDs and present in synapses as biomarkers of NDs, the levels of 37 brain-enriched and inflammation-associated microRNAs in the plasma of all participants were measured using individual qRT-PCR. A “microRNA pair” approach was used for data normalization. Results MicroRNA pairs and their combinations (classifiers) capable of differentiating NDs from control and from each other were defined using independently and jointly analyzed training and confirmation datasets. AD, PD, FTD, and ALS are differentiated from control with accuracy of 0.89, 0.90, 0.88, and 0.83 (AUCs, 0.96, 0.96, 0.94, and 0.93), respectively; NDs are differentiated from each other with accuracy ranging from 0.77 (AUC, 0.87) for AD vs. FTD to 0.93 (AUC, 0.98) for AD vs. ALS. The data further indicate sex dependence of some microRNA markers. The average increase in accuracy in distinguishing ND from control for all and male/female groups is 0.06; the largest increase is for ALS, from 0.83 for all participants to 0.92/0.98 for male/female participants. Conclusions The work presented here suggests the possibility of developing microRNA-based diagnostics for detection and differentiation of NDs. Larger multicenter clinical studies are needed to further evaluate circulating brain-enriched microRNAs as biomarkers for NDs and to investigate their association with other ND biomarkers in clinical trial settings.
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- 2017
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50. Characterization of Parkinson's disease using blood-based biomarkers: A multicohort proteomic analysis.
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Marijan Posavi, Maria Diaz-Ortiz, Benjamine Liu, Christine R Swanson, R Tyler Skrinak, Pilar Hernandez-Con, Defne A Amado, Michelle Fullard, Jacqueline Rick, Andrew Siderowf, Daniel Weintraub, Leo McCluskey, John Q Trojanowski, Richard B Dewey, Xuemei Huang, and Alice S Chen-Plotkin
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Medicine - Abstract
BackgroundParkinson's disease (PD) is a progressive neurodegenerative disease affecting about 5 million people worldwide with no disease-modifying therapies. We sought blood-based biomarkers in order to provide molecular characterization of individuals with PD for diagnostic confirmation and prediction of progression.Methods and findingsIn 141 plasma samples (96 PD, 45 neurologically normal control [NC] individuals; 45.4% female, mean age 70.0 years) from a longitudinally followed Discovery Cohort based at the University of Pennsylvania (UPenn), we measured levels of 1,129 proteins using an aptamer-based platform. We modeled protein plasma concentration (log10 of relative fluorescence units [RFUs]) as the effect of treatment group (PD versus NC), age at plasma collection, sex, and the levodopa equivalent daily dose (LEDD), deriving first-pass candidate protein biomarkers based on p-value for PD versus NC. These candidate proteins were then ranked by Stability Selection. We confirmed findings from our Discovery Cohort in a Replication Cohort of 317 individuals (215 PD, 102 NC; 47.9% female, mean age 66.7 years) from the multisite, longitudinally followed National Institute of Neurological Disorders and Stroke Parkinson's Disease Biomarker Program (PDBP) Cohort. Analytical approach in the Replication Cohort mirrored the approach in the Discovery Cohort: each protein plasma concentration (log10 of RFU) was modeled as the effect of group (PD versus NC), age at plasma collection, sex, clinical site, and batch. Of the top 10 proteins from the Discovery Cohort ranked by Stability Selection, four associations were replicated in the Replication Cohort. These blood-based biomarkers were bone sialoprotein (BSP, Discovery false discovery rate [FDR]-corrected p = 2.82 × 10-2, Replication FDR-corrected p = 1.03 × 10-4), osteomodulin (OMD, Discovery FDR-corrected p = 2.14 × 10-2, Replication FDR-corrected p = 9.14 × 10-5), aminoacylase-1 (ACY1, Discovery FDR-corrected p = 1.86 × 10-3, Replication FDR-corrected p = 2.18 × 10-2), and growth hormone receptor (GHR, Discovery FDR-corrected p = 3.49 × 10-4, Replication FDR-corrected p = 2.97 × 10-3). Measures of these proteins were not significantly affected by differences in sample handling, and they did not change comparing plasma samples from 10 PD participants sampled both on versus off dopaminergic medication. Plasma measures of OMD, ACY1, and GHR differed in PD versus NC but did not differ between individuals with amyotrophic lateral sclerosis (ALS, n = 59) versus NC. In the Discovery Cohort, individuals with baseline levels of GHR and ACY1 in the lowest tertile were more likely to progress to mild cognitive impairment (MCI) or dementia in Cox proportional hazards analyses adjusting for age, sex, and disease duration (hazard ratio [HR] 2.27 [95% CI 1.04-5.0, p = 0.04] for GHR, and HR 3.0 [95% CI 1.24-7.0, p = 0.014] for ACY1). GHR's association with cognitive decline was confirmed in the Replication Cohort (HR 3.6 [95% CI 1.20-11.1, p = 0.02]). The main limitations of this study were its reliance on the aptamer-based platform for protein measurement and limited follow-up time available for some cohorts.ConclusionsIn this study, we found that the blood-based biomarkers BSP, OMD, ACY1, and GHR robustly associated with PD across multiple clinical sites. Our findings suggest that biomarkers based on a peripheral blood sample may be developed for both disease characterization and prediction of future disease progression in PD.
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- 2019
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