40 results on '"Correia-Gomes, Carla"'
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2. Association of Mycobacterium avium paratuberculosis serostatus with age at first calving, calving interval, and milk production in dairy cows
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Martins, Elisabete, Oliveira, Pedro, Correia-Gomes, Carla, Mendonça, Denisa, and Ribeiro, João Niza
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- 2024
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3. SVEPM 2022, the annual conference of the Society for Veterinary Epidemiology and Preventive Medicine: A joyful hybrid meeting after two years online
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Dórea, Fernanda C., Vergne, Timothée, Correia-Gomes, Carla, Carmo, Luís Pedro, Fischer, Egil A.J., Brodbelt, Dave C., Robinson, Philip A., and van Schaik, Gerdien
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- 2023
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4. Evaluation of a scheme to identify risks for tail biting in pigs.
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D'Alessio, Roberta Maria, Mc Aloon, Conor G., Correia-Gomes, Carla, Hanlon, Alison, and O'Driscoll, Keelin
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INVESTMENT risk ,SWINE farms ,SWINE housing ,RISK assessment ,APPRAISERS - Abstract
The study aimed to assess the effectiveness of a tail-biting risk assessment scheme. The scheme consisted of trained private veterinary practitioners (assessors) applying a risk assessment tool on commercial pig farms to six pens per farm. The assessment tool included animal and non-animal-based observations which were used to determine the perceived risk of tail biting for each pen. For this study 27 farms were assessed, and a subsequent batch of pigs from each farm underwent post-mortem tail lesion scoring at the abattoir. The assessments revealed that a high percentage of pens had fully slatted flooring (92%) and mixed-sex populations (84%), with a significant proportion of pens containing pigs which were all tail docked (92%). Most pens (86%) did not allow all pigs simultaneous access to feeders. Enrichment was present in 88% of the pens, but most (46%) were supplied with only one item, and only 15% offering multiple enrichment types. The study found no significant associations between the risk of tail biting and visible injuries, dirty flanks, or tucked tails, as assessed by the assessors (P > 0.05). Similarly, the risk of tail biting reported per pen was not associated with aggressive, damaging, or exploratory behaviours (P > 0.05). At the abattoir, 96% of pigs' tails exhibited minor skin damage, with only 4% showing moderate to severe damage. Furthermore, no links were found between the scores obtained during slaughter and the risk of tail biting, as reported by the assessors (P < 0.05). Although the tool was useful in identifying several improvements that could be made at farm level in areas such as stocking density, enrichment provision and reducing tail docking, overall the results underscored the need for improved training of assessors, and the challenge of associating management practices and animal based measures with tail-biting risk. [ABSTRACT FROM AUTHOR]
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- 2024
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5. The advantages of using cytospins of uterine lavage fluid for the diagnosis of equine endometritis
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Marcos, Ricardo, Ribeiro, Tiago, Santos, Marta, Correia-Gomes, Carla, Macedo, Sónia, Guimarães, Tiago, Blielbernicht, Miguel, Caniatti, Mario, and Rocha, António
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- 2020
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6. Exploring the attitudes of backyard poultry keepers to health and biosecurity
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Correia-Gomes, Carla and Sparks, Nick
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- 2020
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7. Desirable BUGS in models of infectious diseases
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Auzenbergs, Megan, Correia-Gomes, Carla, Economou, Theo, Lowe, Rachel, and O’Reilly, Kathleen M
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- 2019
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8. An economic assessment of alternative antimicrobial use scenarios on pig farms.
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Shrestha, Shailesh, da Costa, Maria R., Correia-Gomes, Carla, Nevel, Amanda, McGowan, Andy, and Tongue, Sue C.
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SWINE farms ,AGRICULTURAL prices ,GROSS margins ,MARKET prices ,VARIABLE costs - Abstract
This paper explores the theoretical economic outcome of management changes that result in different levels of antimicrobial use (AMU) in two types of UK pig farm. A static farm economic pig production model (FEPM) was used on a representative 'Top-third' most profitable farm and a representative 'Midrange' profitable farm. Three AMU theoretical management scenarios were investigated; (a) management changes leading to a reduction of AMU by 35% (AMU35); (b) more extensive management changes leading to a reduction of AMU by 95% (AMU95); and (c) implementing depopulation of the herd (AMU Depop). A sensitivity analysis was conducted to determine the effect of increases or decreases in pig revenue and feed price on farm gross margin under these scenarios. Over a single year, the AMU35 scenario was estimated to have a small positive impact (+3%) on both farm types. The other two AMU reduction scenarios had higher AMU reduction on farms but required higher variable cost and hence they resulted in lower farm profitability. There was a substantial reduction (up to -50%) in farm gross margin under these two AMU reduction scenarios in the modeled short-term time-period. The impact of the alternative AMU scenarios was slightly higher on a farm representing the 'Top-third' farm type, reducing farm gross margin further by 7% compared to the 'Mid-range' farm. Nevertheless, both farm types stay profitable under all three AMU scenarios. The results showed that in the modeled short-term implementing management changes that result in a reduction of on-farm AMU by 35% had a good economic outcome. In practice, the other two scenarios would be considered as longer-term strategies. Although both require higher initial costs to implement, the improved biosecurity and hygiene will benefit from lower disease occurrence for a longer term. Farm gross margins were, however, found to be highly sensitive to changes on market prices especially increasing feed prices. An increase of more than 15% in feed price moved a profitable farm into a loss-making farm. It will be economically challenging for uptakes of these, or similar, AMU reduction scenarios on farms if the market prices become un-favorable to pig farmers. [ABSTRACT FROM AUTHOR]
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- 2024
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9. Exploring the role of small-scale livestock keepers for national biosecurity—The pig case
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Correia-Gomes, Carla, Henry, Madeleine K., Auty, Harriet K., and Gunn, George J.
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- 2017
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10. Bovine mortality: the utility of two data sources for the provision of population-level surveillance intelligence.
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Eze, Jude I., Correia-Gomes, Carla, Gunn, George J., and Tongue, Sue C.
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RISK managers ,LIVESTOCK mortality ,AGE groups ,BOS ,ANIMAL health ,MORTALITY ,EPIDEMIOLOGISTS - Abstract
Introduction: The use of existing data to provide surveillance intelligence is widely advocated but often presents considerable challenges. Two data sources could be used as proxies for the mortality experienced by the Scottish cattle population: deaths recorded in the mandatory register [Cattle Tracing System (CTS)] and fallen stock collections by the National Fallen Stock Company (NSFCo) with a nationwide voluntary membership. Methods: Data for the period 2011-2016 were described and compared to establish their strengths and limitations. Similarities and differences in their temporal, seasonal and spatial patterns were examined overall, at postcode area level and for different age groups. Temporal aberration detection algorithms (TADA) were fitted. Results: Broadly, similar patterns were observed in the two datasets; however, there were some notable differences. The observed seasonal, annual and spatial patterns match expectations, given knowledge of Scottish cattle production systems. The registry data provide more comprehensive coverage of all areas of Scotland, while collections data provide a more comprehensive measure of the mortality experienced in 0-1-month-old calves. Discussion: Consequently, estimates of early calf mortality and their impact on the livestock sector made using CTS, or successor registers, will be under-estimates. This may apply to other registry-based systems. Fitted TADA detected points of deviations from expected norms some of which coincided in the two datasets; one with a known external event that caused increased mortality. We have demonstrated that both data sources do have the potential to be utilized to provide measures of mortality in the Scottish cattle population that could inform surveillance activities. While neither is perfect, they are complementary. Each has strengths and weaknesses, so ideally, a system where they are analyzed and interpreted in parallel would optimize the information obtained for surveillance purposes for epidemiologists, risk managers, animal health policy-makers and the wider livestock industry sector. This study provides a foundation on which to build an operational system. Further development will require improvements in the timeliness of data availability and further investment of resources. [ABSTRACT FROM AUTHOR]
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- 2024
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11. Evaluation of a Manual Cytocentrifuge versus the Standard Automated Cytocentrifuge in the Analysis of Canine Cerebrospinal Fluid: A Case Series of 55 Dogs.
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Fonte-Oliveira, Luísa, Pereira, André, Gregório, Hugo, Ribeiro, João, Correia-Gomes, Carla, Marcos, Ricardo, and Santos, Marta
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CEREBROSPINAL fluid examination ,CEREBROSPINAL fluid ,CYTODIAGNOSIS ,DOGS ,THERAPEUTIC communication ,CYTOLOGY - Abstract
Simple Summary: Veterinary cytology has become a cornerstone method for confirming initial clinical diagnosis, guiding early owner communication and therapeutic planning. Cytology is often acclaimed for the ease of obtaining samples, quick results and lower cost when compared with other diagnostic tests. The analysis of cerebrospinal fluid plays a central role in the management of neurologic patients. Cerebrospinal fluid is typically a low-protein, low-cell fluid that must be rapidly cytocentrifuged to obtain a good-quality cytologic slide, called a cytospin. Automated cytocentrifuges are relatively expensive pieces of equipment typically only available in veterinary and human diagnostic laboratories, but are not usually available for use in routine clinical practice. A low-cost manual cytocentrifuge is readily available and has been developed to obtain in-clinic cytospins of a variety of fluid samples. In this study, the use of a manual cytocentrifuge was validated for analysis of canine cerebrospinal fluids in routine clinical practice. Cytospins are important for evaluating fluids with very low cellularity such as cerebrospinal fluid (CSF). The aim of this study was to compare the CSF cytospin preparations obtained from automated and manual cytocentrifugation methods. A prospective case series was performed to analyze canine CSF samples using both centrifugation methods. The cytospins were processed within 30–60 min and prepared simultaneously in a conventional automated cytocentrifuge and in an in-house manual cytocentrifuge, using a fixed volume of CSF fluid. The cellularity, differential cell count and the proportion of cell artifacts (pseudopods and vacuolization) were blindly assessed in the cytospin preparations obtained using the two methods. The agreement and correlation between both methods were analyzed. There were 55 dogs enrolled (48 prospectively and 7 retrospectively) in the study. 38 dogs had normal total nucleated cell counts, while 17 had pleocytosis. Automated and manual cytocentrifugation had similar cell yields, and no significant differences in differential cell counts or the presence of artifacts existed between both methods. In cases with pleocytosis, the cytologic diagnosis obtained using each method was similar. Manual cytocentrifugation of CSF is a reliable and economic method designed for routine clinical practice. Its use reduces the specimen deterioration related to processing and analysis delays when samples are transported to external laboratories for evaluation. [ABSTRACT FROM AUTHOR]
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- 2023
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12. Long live the liver: immunohistochemical and stereological study of hepatocytes, liver sinusoidal endothelial cells, Kupffer cells and hepatic stellate cells of male and female rats throughout ageing
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Marcos, Ricardo and Correia-Gomes, Carla
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- 2016
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13. Nuclear pleomorphism: Role in grading and prognosis of canine mammary carcinomas
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Santos, Marta, Correia-Gomes, Carla, Santos, Andreia, de Matos, Augusto, Rocha, Eduardo, Lopes, Carlos, and Pereira, Patrícia Dias
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- 2014
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14. Use of the optical disector in canine mammary simple and complex carcinomas
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Santos, Marta, Dias‐Pereira, Patrícia, Correia‐Gomes, Carla, Marcos, Ricardo, de Matos, Augusto, Rocha, Eduardo, and Lopes, Carlos
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- 2017
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15. SVEPM 2023, the annual conference of the Society for Veterinary Epidemiology and Preventive Medicine: Toulouse finally welcomes us in person
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Dórea, Fernanda C., Vergne, Timothée, Correia-Gomes, Carla, Carmo, Luís Pedro, Fischer, Egil A.J., Messam, Locksley L. McV., Brodbelt, Dave C., and Robinson, Philip A.
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- 2024
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16. Stereological assessment of sexual dimorphism in the rat liver reveals differences in hepatocytes and Kupffer cells but not hepatic stellate cells
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Marcos, Ricardo, Lopes, Célia, Malhão, Fernanda, Correia-Gomes, Carla, Fonseca, Sónia, Lima, Margarida, Gebhardt, Rolf, and Rocha, Eduardo
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- 2016
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17. Detection of Lymphoid Markers (CD3 and PAX5) for Immunophenotyping in Dogs and Cats: Comparison of Stained Cytology Slides and Matched Cell Blocks.
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Sampaio, Filipe, Marrinhas, Carla, Fonte Oliveira, Luísa, Malhão, Fernanda, Lopes, Célia, Gregório, Hugo, Correia-Gomes, Carla, Marcos, Ricardo, Caniatti, Mario, and Santos, Marta
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CYTOLOGY ,CD3 antigen ,IMMUNOPHENOTYPING ,DOGS ,CAT diseases ,EXUDATES & transudates ,T cells ,B cells - Abstract
Simple Summary: The B- or T-cell phenotype of a canine or feline lymphoma is relevant for treatment selection and prognosis. This phenotype is determined by complementary techniques and there is some evidence that the previously stained cytology (RSC) slides used for routine diagnose of lymphoma are suitable for assessing B and T-cell phenotype by immunocytochemistry. Still, immunodetection of the lymphoid markers can also be achieved with cell blocks (CB) prepared from effusions fluids or needle rinses. A comparison between these two RSC and CB is missing in the literature. In this study, lymphoid markers (CD3 and PAX5) were simultaneously studied in RSC and matched CB from 53 lymphomas and 4 chylous (lymphocyte-rich) effusions from dogs and cats. The influence of pre-analytical variables (species, time of archive, type of specimen, and coverslipping) and the interobserver agreement were assessed. Fewer CD3+ lymphocytes were identified in RSC, but the PAX5 positivity in RSC and CB had a substantial agreement. Immunodetection of CD3 and diagnosing a T-cell population on RSC were more difficult. Immunophenotyping was inconclusive in 54% RPSC and in 19% CB. The interobserver reproducibility of immunophenotyping on CB was substantial and higher than in RSC. The performance of RSC from effusions and feline samples was unsatisfactory. The detection of lymphoid markers on RSC was affected by pre-analytical variables, whilst CB was more consistent for assigning a lymphoma phenotype. Immunolabeling on Romanowsky-stained cytology (RSC) slides can be used, although there is limited evidence of its suitability for phenotyping canine and feline lymphomas. A comparison with matched cell blocks (CB) is missing. Immunolabeling on RSC and CB was compared for lymphoid markers (CD3 and PAX5) in 53 lymphomas and 4 chylous effusions from dogs and cats. The influence of pre-analytical variables (species, time of archive, type of specimens and coverslipping) and the interobserver agreement among the 2 observers was assessed. Fewer CD3+ lymphocytes were identified in RSC, while the PAX5 positivity by RSC and CB had a substantial agreement. Immunodetection of CD3 and the diagnosis of a T-cell population on RSC was more difficult. Lower intensity and higher background were noted in RSC. Immunophenotyping was inconclusive in 54% RSC and 19% CB. The interobserver reproducibility of immunophenotyping on CB was substantial, being higher than in RSC. The immunolabeling performance on the RSC of effusion and feline samples was unsatisfactory. The detection of lymphoid markers, especially membranous antigens in retrospective RSC, is affected by the pre-analytical variables: species, time of the archive, and type of specimens. CB are a more consistent type of sample for immunophenotyping purposes. [ABSTRACT FROM AUTHOR]
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- 2023
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18. Liver and gender: Are there differences in fibrous tissue before the onset of fibrosis?
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Marcos, Ricardo and Correia-Gomes, Carla
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- 2015
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19. The innate immune system of the liver: May it explain the stronger viral clearance in female sex?
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Marcos, Ricardo and Correia-Gomes, Carla
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- 2014
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20. Porcine reproductive and respiratory syndrome virus seroprevalence in Scottish finishing pigs between 2006 and 2018.
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Correia-Gomes, Carla, Duncan, Andrew, Ward, Allan, Pearce, Michael, Eppink, Lysan, Webster, Grace, McGowan, Andy, and Thomson, Jill
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- 2022
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21. Canine mast cell tumors: utility of stereologic tools in cytology.
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Marcos, Ricardo, Almeida, João, Marques, Joana, Moreira, Raquel, Dias-Pereira, Patrícia, Correia-Gomes, Carla, and Santos, Marta
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MAST cell tumors ,CYTOLOGICAL techniques ,MAST cells ,IMAGE analysis ,STEREOLOGY - Abstract
Quantitative morphologic parameters assessed in cytologic samples of canine cutaneous mast cell tumors (ccMCTs) may assist with surgical planning and prognostication. Robust cutoffs can be defined, with high reproducibility, for parameters such as the nuclear area (NA). The NA may be determined by morphometry (image analysis, NAI) or by stereology, such as the 2D-nucleator method (NAN); stereologic techniques have not been applied to cytologic specimens of ccMCT, to our knowledge. We retrospectively selected routine cytology smears from 51 ccMCT cases and screened them to determine the percentage of neoplastic mast cells with indistinct nuclear borders; this was repeated after the slides were restained with H&E. The NAI and the NAN were estimated in 100 mast cells per animal in H&E-stained slides. All nuclei were visible in H&E smears, and unbiased quantification was feasible. The NAN was similar to NAI, but less time-consuming. Both the NAN and NAI determined by cytology differed in histologic low- and high-grade ccMCTs, and in histologic grade I plus II versus grade III ccMCTs. Stereologic parameters such as the NAN could be considered as complementary techniques for the cytologic evaluation of ccMCTs. [ABSTRACT FROM AUTHOR]
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- 2022
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22. STOC Free: An Innovative Framework to Compare Probability of Freedom From Infection in Heterogeneous Control Programmes
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van Roon, Annika M., Santman-Berends, Inge M. G. A., Graham, David, More, Simon J., Nielen, Mirjam, Madouasse, Aurélien, Mercat, Mathilde, Fourichon, Christine, Gethmann, Jörn, Frössling, Jenny, Lindberg, Ann, Correia-Gomes, Carla, Gunn, George J., Sauter-Louis, Carola, Henry, Madeleine K., van Duijn, Linda, van Schaik, Gerdien, LS Evidence Based Vet Medicine, dFAH AVR, LS GZ Landbouwhuisdieren, LS Evidence Based Vet Medicine, dFAH AVR, LS GZ Landbouwhuisdieren, Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University [Utrecht], GD Animal Health, Partenaires INRAE, Ireland, University College Dublin (UCD), Biologie, Epidémiologie et analyse de risque en Santé Animale (BIOEPAR), Institut National de la Recherche Agronomique (INRA), Friedrich-Loeffler-Institut (FLI), National Veterinary Institute, and Scotland's Rural College (SRUC)
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output-based ,Frequency of occurrence ,Computer science ,[SDV]Life Sciences [q-bio] ,Control (management) ,Biosecurity ,Target groups ,Control programmes ,Output-based ,Freedom from disease ,Bovine viral diarrhea virus ,Bayesian statistics ,Safe trade ,freedom from disease ,lcsh:Veterinary medicine ,General Veterinary ,Member states ,Bayesian network ,control programmes ,bovine viral diarrhea virus ,Risk analysis (engineering) ,Perspective ,lcsh:SF600-1100 ,Veterinary Science - Abstract
The existence, stage of eradication and design of control programmes (CPs) for diseases that are not regulated by the EU differ between Member States. When freedom from infection is reached (or being pursued), safe trade is essential to protect (or reach) that status. The aim of STOC free, a collaborative project between six countries, is to develop and validate a framework that enables a transparent and standardized comparison of confidence of freedom for CPs across herds, regions or countries. The framework consists of a model combined with a tool to facilitate the collection of the necessary parameters. All relevant actions taken in a CP are included in a Bayesian network model, which allows prior distributions for most parameters. In addition, frequency of occurrence and risk estimates for factors that influence either the probability of introduction or temporary misclassification leading to delayed detection of the infection are included in the model. Bovine viral diarrhoea virus (BVDV) is used as an example disease. Many countries have CPs in place for BVDV and although elements of the CPs are similar, biosecurity measures and testing protocols, including types of tests and testing frequency, as well as target groups, differ widely. Although the initially developed framework is based on BVDV, the aim is to make it sufficiently generic to be adaptable to CPs for other diseases and possibly other species. Thus, STOC free will result in a single general framework, adaptable to multiple disease CPs, which aims to enhance the safety of trade. European Food Safety Authority
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- 2019
23. Description of control programmes for Salmonella in pigs in Europe. Progress to date?
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Correia‐Gomes, Carla, Leonard, Finola, and Graham, David
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SALMONELLA , *FOODBORNE diseases , *SWINE , *FOOD chains , *SEROPREVALENCE , *VEGETARIANS - Abstract
Salmonella spp. are one of the main causes of foodborne disease in Europe and have been associated with consumption of pig meat. However, Salmonella monitoring programmes in pigs and pig meat are not harmonized between those European countries where they exist. In general, current control programmes in Europe can be split into those aiming for: (a) elimination of infection and (b) control and reduction. Elimination programmes for Salmonella were introduced by Sweden, Norway, and Finland several decades ago. They have several elements in common including: prevalence at farm level at the start of the programmes was low, the programmes focus on the entire food chain and use bacteriology as the main detection method. If Salmonella contamination is detected stringent measures are applied. These programmes have achieved their target of a very low level of positive carcase swabs. Other European countries (e.g., Denmark, Germany, Netherlands, Belgium, UK, Ireland) have aimed for control and reduction of Salmonella in pigs rather than elimination. The main component that these programmes have in common is that their monitoring system is based on serology and farms are assigned to risk categories based on their serological profile, with control measures being targeted to high seroprevalence farms. The degree of success of each programme has varied but overall, the programmes described here have not achieved a consistent reduction of farm‐level prevalence. This review describes these programmes in detail and discusses reasons for the failure to achieve the desired outcome of reducing Salmonella prevalence at farm level. [ABSTRACT FROM AUTHOR]
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- 2021
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24. Assessing risk profiles for Salmonella serotypes in breeding pig operations in Portugal using a Bayesian hierarchical model
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Correia-Gomes Carla, Economou Theodoros, Mendonça Denisa, Vieira-Pinto Madalena, and Niza-Ribeiro João
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Veterinary medicine ,SF600-1100 - Abstract
Abstract Background The EU Regulation No 2160/2003 imposes a reduction in the prevalence of Salmonella in pigs. The efficiency of control programmes for Salmonella in pigs, reported among the EU Member States, varies and definitive eradication seems very difficult. Control measures currently recommended for Salmonella are not serotype-specific. Is it possible that the risk factors for different Salmonella serotypes are different? The aim of this study was to investigate potential risk factors for two groups of Salmonella sp serotypes using pen faecal samples from breeding pig holdings representative of the Portuguese pig sector. Methods The data used come from the Baseline Survey for the Prevalence of Salmonella in breeding pigs in Portugal. A total of 1670 pen faecal samples from 167 herds were tested, and 170 samples were positive for Salmonella. The presence of Salmonella in each sample (outcome variable) was classified in three categories: i) no Salmonella, ii) Salmonella Typhimurium or S. Typhimurium-like strains with the antigenic formula: 1,4,5,12:i:-, , and iii) other serotypes. Along with the sample collection, a questionnaire concerning herd management and potential risk factors was utilised. The data have a “natural” hierarchical structure so a categorical multilevel analysis of the dataset was carried out using a Bayesian hierarchical model. The model was estimated using Markov Chain Monte Carlo methods, implemented in the software WinBUGS. Results The significant associations found (when compared to category “no Salmonella”), for category “serotype Typhimurium or S. Typhimurium-like strains with the antigenic formula: 1,4,5,12:i:-” were: age of breeding sows, size of the herd, number of pigs/pen and source of semen. For the category “other serotypes” the significant associations found were: control of rodents, region of the country, source of semen, breeding sector room and source of feed. Conclusions The risk factors significantly associated with Salmonella shedding from the category “serotype Typhimurium or serotype 1,4,5,12:i:-“ were more related to animal factors, whereas those associated with “other serotypes” were more related to environmental factors. Our findings suggest that different control measures could be used to control different Salmonella serotypes in breeding pigs.
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- 2012
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25. Vulnerability of the British swine industry to classical swine fever
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Porphyre, Thibaud, Correia-Gomes, Carla, Chase-Topping, Margo E., Gamado, Kokouvi, Auty, Harriet K., Hutchinson, Ian, Reeves, Aaron, Gunn, George J., and Woolhouse, Mark E.J.
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Classical Swine Fever ,Risk ,Swine ,Animals ,Industry ,Models, Theoretical ,Epidemics ,Article ,United Kingdom - Abstract
Classical swine fever (CSF) is a notifiable, highly contagious viral disease of swine which results in severe welfare and economic consequences in affected countries. To improve preparedness, it is critical to have some understanding of how CSF would spread should it be introduced. Based on the data recorded during the 2000 epidemic of CSF in Great Britain (GB), a spatially explicit, premises-based model was developed to explore the risk of CSF spread in GB. We found that large outbreaks of CSF would be rare and generated from a limited number of areas in GB. Despite the consistently low vulnerability of the British swine industry to large CSF outbreaks, we identified concerns with respect to the role played by the non-commercial sector of the industry. The model further revealed how various epidemiological features may influence the spread of CSF in GB, highlighting the importance of between-farm biosecurity in preventing widespread dissemination of the virus. Knowledge of factors affecting the risk of spread are key components for surveillance planning and resource allocation, and this work provides a valuable stepping stone in guiding policy on CSF surveillance and control in GB.
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- 2017
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26. Multilayer network analysis unravels haulage vehicles as a hidden threat to the British swine industry.
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Porphyre, Thibaud, Bronsvoort, Barend M. de C., Gunn, George J., and Correia‐Gomes, Carla
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SWINE industry ,BASIC reproduction number ,SWINE diseases ,INFECTIOUS disease transmission ,ANIMAL mechanics ,COMMUNICABLE diseases ,PORCINE reproductive & respiratory syndrome - Abstract
When assessing the role of live animal trade networks in the spread of infectious diseases in livestock, attention has focused mainly on direct movements of animals between premises, whereas the role of haulage vehicles used during transport, an indirect route for disease transmission, has largely been ignored. Here, we have assessed the impact of sharing haulage vehicles from livestock transport service providers on the connectivity between farms as well as on the spread of swine infectious diseases in Great Britain (GB). Using all pig movement records between April 2012 and March 2014 in GB, we built a series of directed and weighted static multiplex networks consisting of two layers of identical nodes, where nodes (farms) are linked either by (a) the direct movement of pigs and (b) the shared use of haulage vehicles. The haulage contact definition integrates the date of the move and the duration Δs that lorries are left contaminated by pathogens, hence accounting for the temporal aspect of contact events. For increasing Δs, descriptive network analyses were performed to assess the role of haulage on network connectivity. We then explored how viruses may spread throughout the GB pig sector by computing the reproduction number R. Our results showed that sharing haulage vehicles increases the number of contacts between farms by >50% and represents an important driver of disease transmission. In particular, sharing haulage vehicles, even if Δs < 1 day, will limit the benefit of the standstill regulation, increase the number of premises that could be infected in an outbreak, and more easily raise R above 1. This work confirms that sharing haulage vehicles has significant potential for spreading infectious diseases within the pig sector. The cleansing and disinfection process of haulage vehicles is therefore a critical control point for disease transmission risk mitigation. [ABSTRACT FROM AUTHOR]
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- 2020
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27. Review of pig health and welfare surveillance data sources in England and Wales.
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Smith, Richard P., Correia-Gomes, Carla, Williamson, Susanna, Marier, Elizabeth A., Gilson, Daniel, and Tongue, Sue C.
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PORCINE reproductive & respiratory syndrome ,SWINE ,DATA - Published
- 2019
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28. Cytocentrifuge preparation in veterinary cytology: a quick, simple, and affordable manual method to concentrate low cellularity fluids.
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Marcos, Ricardo, Santos, Marta, Marrinhas, Carla, Correia‐Gomes, Carla, and Caniatti, Mario
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CYTOLOGY methodology ,CEREBROSPINAL fluid ,BRONCHOALVEOLAR lavage ,CENTRIFUGES ,CYTODIAGNOSIS - Abstract
Background Smears prepared by cytocentrifugation, the so-called cytospins, are widely used in human and veterinary cytology. However, the high cost has hampered the availability of commercial cytospin centrifuges in some veterinary clinics and laboratories. Nevertheless, cytospins are important for evaluating fluids with very low cellularity such as cerebrospinal fluid ( CSF) or bronchoalveolar lavage fluid ( BALF). Objectives The aim of this study was to devise and test the use of a low-cost, in-house manual cytocentrifuge to obtain cytospin preparations. Methods Twenty-two fluid samples (including CSF and BALF) were collected from dogs and cats. These were processed in a conventional cytocentrifuge and in an in-house, manual centrifuge (salad spinner). The cytospins obtained by the 2 methods were compared by scoring cellularity, number of cells per field, hemodilution, cell preservation, and proportion of ruptured cells. Additionally, cell number and size were compared by morphometry. Differences between the automated and manual method were statistically assessed. Results The morphology and cellular detail of cytospin preparations produced by both methods were identical. There was an almost perfect agreement for cellularity, number of cells per HPF, hemodilution and cell preservation (kappa ≥ 0.85), and a moderate agreement for the amount of ruptured cells. Cell recovery was comparable (including in CSF and BALF). Conclusions The manual cytocentrifuge produced cytospins with similar cell yield as the automated cytocentrifuge. Considering the low cost and portability, this new method should be particularly useful for cytologic diagnosis in small clinics, developing countries, and in field studies. [ABSTRACT FROM AUTHOR]
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- 2016
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29. Pig Abattoir Inspection Data: Can It Be Used for Surveillance Purposes?
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Correia-Gomes, Carla, Smith, Richard P., Eze, Jude I., Henry, Madeleine K., Gunn, George J., Williamson, Susanna, and Tongue, Sue C.
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SLAUGHTERING , *LABORATORY swine , *COMPARATIVE studies , *ACQUISITION of data - Abstract
Statutory recording of carcass lesions at the abattoir may have significant potential as a resource for surveillance of livestock populations. Food Standards Agency (FSA) data in Great Britain are not currently used for surveillance purposes. There are concerns that the sensitivity of detection, combined with other issues, may make the outputs unreliable. In this study we postulate that FSA data could be used for surveillance purposes. To test this we compared FSA data with BPHS (a targeted surveillance system of slaughtered pigs) and laboratory diagnostic scanning surveillance (FarmFile) data, from mid-2008 to mid-2012, for respiratory conditions and tail bite lesions in pigs at population level. We also evaluated the agreement/correlation at batch level between FSA and BPHS inspections in four field trials during 2013. Temporal trends and regional differences at population level were described and compared using logistic regression models. Population temporal analysis showed an increase in respiratory disease in all datasets but with regional differences. For tail bite, the temporal trend and monthly patterns were completely different between the datasets. The field trials were run in three abattoirs and included 322 batches. Pearson’s correlation and Cohen’s kappa tests were used to assess correlation/agreement between inspections systems. It was moderate to strong for high prevalence conditions but slight for low prevalence conditions. We conclude that there is potential to use FSA data as a component of a surveillance system to monitor temporal trends and regional differences of chosen indicators at population level. At producer level and for low prevalence conditions it needs further improvement. Overall a number of issues still need to be addressed in order to provide the pig industry with the confidence to base their decisions on these FSA inspection data. Similar conclusions, at national level, may apply to other livestock sectors but require further evaluation of the inspection and data collection processes. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
30. How commercial and non-commercial swine producers move pigs in Scotland: a detailed descriptive analysis.
- Author
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Porphyre, Thibaud, Boden, Lisa A., Correia-Gomes, Carla, Auty, Harriet K., Gunn, George J., and Woolhouse, Mark E. J.
- Subjects
PORK processing ,PORK industry ,SWINE diseases ,INFECTIOUS disease transmission ,LIVESTOCK handling - Abstract
Background The impact of non-commercial producers on disease spread via livestock movement is related to their level of interaction with other commercial actors within the industry. Although understanding these relationships is crucial in order to identify likely routes of disease incursion and transmission prior to disease detection, there has been little research in this area due to the difficulties of capturing movements of small producers with sufficient resolution. Here, we used the Scottish Livestock Electronic Identification and Traceability (ScotEID) database to describe the movement patterns of different pig production systems which may affect the risk of disease spread within the swine industry. In particular, we focused on the role of small pig producers. Results Between January 2012 and May 2013, 23,169 batches of pigs were recorded moving animals between 2382 known unique premises. Although the majority of movements (61%) were to a slaughterhouse, the non-commercial and the commercial sectors of the Scottish swine industry coexist, with on- and off-movement of animals occurring relatively frequently. For instance, 13% and 4% of non-slaughter movements from professional producers were sent to a non-assured commercial producer or to a small producer, respectively; whereas 43% and 22% of movements from non-assured commercial farms were sent to a professional or a small producer, respectively. We further identified differences between producer types in several animal movement characteristics which are known to increase the risk of disease spread. Particularly, the distance travelled and the use of haulage were found to be significantly different between producers. Conclusions These results showed that commercial producers are not isolated from the non-commercial sector of the Scottish swine industry and may frequently interact, either directly or indirectly. The observed patterns in the frequency of movements, the type of producers involved, the distance travelled and the use of haulage companies provide insights into the structure of the Scottish swine industry, but also highlight different features that may increase the risk of infectious diseases spread in both Scotland and the UK. Such knowledge is critical for developing more robust biosecurity and surveillance plans and better preparing Scotland against incursions of emerging swine diseases. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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31. Transmission parameters estimated for Salmonella typhimurium in swine using susceptible-infectiousresistant models and a Bayesian approach.
- Author
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Correia-Gomes, Carla, Economou, Theodoros, Bailey, Trevor, Brazdil, Pavel, Alban, Lis, and Niza-Ribeiro, João
- Subjects
- *
SALMONELLA typhimurium , *SWINE diseases , *BACTERIAL disease transmission , *PORK industry , *BAYESIAN analysis , *MANAGEMENT - Abstract
Background Transmission models can aid understanding of disease dynamics and are useful in testing the efficiency of control measures. The aim of this study was to formulate an appropriate stochastic Susceptible-Infectious-Resistant/Carrier (SIR) model for Salmonella Typhimurium in pigs and thus estimate the transmission parameters between states. Results The transmission parameters were estimated using data from a longitudinal study of three Danish farrow-to-finish pig herds known to be infected. A Bayesian model framework was proposed, which comprised Binomial components for the transition from susceptible to infectious and from infectious to carrier; and a Poisson component for carrier to infectious. Cohort random effects were incorporated into these models to allow for unobserved cohortspecific variables as well as unobserved sources of transmission, thus enabling a more realistic estimation of the transmission parameters. In the case of the transition from susceptible to infectious, the cohort random effects were also time varying. The number of infectious pigs not detected by the parallel testing was treated as unknown, and the probability of non-detection was estimated using information about the sensitivity and specificity of the bacteriological and serological tests. The estimate of the transmission rate from susceptible to infectious was 0.33 [0.06, 1.52], from infectious to carrier was 0.18 [0.14, 0.23] and from carrier to infectious was 0.01 [0.0001, 0.04]. The estimate for the basic reproduction ration (R0) was 1.91 [0.78, 5.24]. The probability of non-detection was estimated to be 0.18 [0.12, 0.25]. Conclusions The proposed framework for stochastic SIR models was successfully implemented to estimate transmission rate parameters for Salmonella Typhimurium in swine field data. R0 was 1.91, implying that there was dissemination of the infection within pigs of the same cohort. There was significant temporal-cohort variability, especially at the susceptible to infectious stage. The model adequately fitted the data, allowing for both observed and unobserved sources of uncertainty (cohort effects, diagnostic test sensitivity), so leading to more reliable estimates of transmission parameters. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
32. A novel bidirectional continuous perfusion bioreactor for the culture of large-sized bone tissue-engineered constructs.
- Author
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Gardel, Leandro S., Correia-Gomes, Carla, Serra, Luís A., Gomes, Manuela E., and Reis, Rui L.
- Abstract
This works reports the development and preliminary assessment of a new bioreactor for culturing large-sized three-dimensional constructs in bone tissue engineering. The bidirectional continuous perfusion bioreactor (BCPB) promotes mechanical stimulation of cells through the creation of shear forces induced by flow perfusion. The main innovation consists in the possibility of culturing scaffolds of large dimensions that can be suitable for the regeneration of critical sized defects. The functionality of BCPB was preliminarily evaluated by culturing starch-polycaprolactone scaffolds/goat bone marrow stromal cells for 14 and 21 days. Cylindrical blocks were stacked (42 mm thick). Static culture was used as controls. The samples were collected for DNA, alkaline phosphatase (ALP), scanning electron microscopy (SEM), and histological analysis. The results showed higher ALP levels in the bioreactor cultures than those obtained under static conditions. The number of cells in constructs cultured in the bioreactor showed lower values compared to static cultures, suggesting that static conditions tend to privilege the metabolic path way for cellular proliferation while dynamic conditions tend to privilege the metabolic path for osteogenic differentiation. SEM observations show that, the migration and cell distribution was observed in the bioreactor. These results demonstrate the feasibility and the benefit of culturing constructs in BCPB. © 2013 Wiley Periodicals, Inc. J Biomed Mater Res Part B: Appl Biomater, 101B: 1377-1386, 2013. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
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33. Estimating antimicrobial usage based on sales to beef and dairy farms from UK veterinary practices.
- Author
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Humphry, Roger William, Henry, Madeleine Kate, Reeves, Aaron, Correia‐Gomes, Carla, Innocent, Giles Thomas, Smith, R., Mason, Colin Stuart, Gunn, George John, and Tongue, Sue C.
- Abstract
Background: Accurate estimation of antimicrobial use (AMU) is important in assessing reduction of agricultural AMU. This cross‐sectional study aimed to evaluate several approaches for estimating AMU at the herd level and to report on AMU for beef and dairy farms in Scotland. Methods: Pharmaceutical sales data for 75 cattle herds (2011‐2015) were screened for antimicrobial products and aggregated by herd and year. Several denominators for usage estimates were calculated and compared for their suitability at the herd level. Results: The median total mass of active ingredient sold per kg of bovine livestock was 9.5 mg/kg for beef herds and 14.3 mg/kg for dairy herds. The 'highest priority critically important' antimicrobials (HPCIA) were by total mass of active ingredient, 10.6% of all sales; by total defined daily dose veterinary (DDDVet), 29.8% and by DCDvet, 20.0%. These are the first estimates of AMU for beef cattle in the UK, and for cattle of any kind in Scotland. Estimates of herd‐level usage based on population correction unit (PCU) were sensitive to low values for PCU for specific herd‐years due to their demographic composition. Conclusion: Pharmaceutical sales data can provide useful estimates of AMU, but estimating usage per PCU is not appropriate for comparing groups of cattle with different demographic compositions or for setting herd‐level targets. Total mass of active ingredient per kilogram of livestock is more stable and hence suitable than PCU‐based methods for assessing AMU at the herd level. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
34. Detecting and managing new animal health threats: how vulnerable are we?
- Author
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Correia-Gomes, Carla and Auty, Harriet K.
- Subjects
ANIMAL health ,VETERINARY medicine ,ANIMAL health indicators - Published
- 2017
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35. Syndromic surveillance by veterinary practitioners: a pilot study in the pig sector.
- Author
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Correia‐Gomes, Carla, Henry, Madeleine Kate, Williamson, Susanna, Irvine, Richard M, Gunn, George J, Woolfenden, Nigel, White, Mark E. C., and Tongue, Sue C
- Abstract
Traditional indicator‐based livestock surveillance has been focused on case definitions, definitive diagnoses and laboratory confirmation. The use of syndromic disease surveillance would increase the population base from which animal health data are captured and facilitate earlier detection of new and re‐emerging threats to animal health. Veterinary practitioners could potentially play a vital role in such activities. In a pilot study, specialist private veterinary practitioners (PVP) working in the English pig industry were asked to collect and transfer background data and disease incident reports for pig farms visited during the study period. Baseline data from 110 pig farms were received, along with 68 disease incident reports. Reports took an average of approximately 25 minutes to complete. Feedback from the PVPs indicated that they saw value in syndromic surveillance. Maintenance of anonymity in the outputs would be essential, as would timely access for the PVPs to relevant information on syndromic trends. Further guidance and standardisation would also be required. Syndromic surveillance by PVPs is possible for the pig industry. It has potential to fill current gaps in the collection of animal health data, as long as the engagement and participation of data providers can be obtained and maintained. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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- View/download PDF
36. Using national movement databases to help inform responses to swine disease outbreaks in Scotland: the impact of uncertainty around incursion time.
- Author
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Porphyre, Thibaud, Boden, Lisa A., Correia-Gomes, Carla, Auty, Harriet K., Gunn, George J., and Woolhouse, Mark E. J.
- Published
- 2016
- Full Text
- View/download PDF
37. Improving the Utility of Voluntary Ovine Fallen Stock Collection and Laboratory Diagnostic Submission Data for Animal Health Surveillance Purposes: A Development Cycle.
- Author
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Tongue SC, Eze JI, Correia-Gomes C, Brülisauer F, and Gunn GJ
- Abstract
There are calls from policy-makers and industry to use existing data sources to contribute to livestock surveillance systems, especially for syndromic surveillance. However, the practical implications of attempting to use such data sources are challenging; development often requires incremental steps in an iterative cycle. In this study the utility of business operational data from a voluntary fallen stock collection service was investigated, to determine if they could be used as a proxy for the mortality experienced by the British sheep population. Retrospectively, Scottish ovine fallen stock collection data (2011-2014) were transformed into meaningful units for analysis, temporal and spatial patterns were described, time-series methods and a temporal aberration detection algorithm applied. Distinct annual and spatial trends plus seasonal patterns were observed in the three age groups investigated. The algorithm produced an alarm at the point of an historic known departure from normal (April 2013) for two age groups, across Scotland as a whole and in specific postcode areas. The analysis was then extended. Initially, to determine if similar methods could be applied to ovine fallen stock collections from England and Wales for the same time period. Additionally, Scottish contemporaneous laboratory diagnostic submission data were analyzed to see if they could provide further insight for interpretation of statistical alarms. Collaboration was required between the primary data holders, those with industry sector knowledge, plus veterinary, epidemiological and statistical expertise, in order to turn data and analytical outcomes into potentially useful information. A number of limitations were identified and recommendations were made as to how some could be addressed in order to facilitate use of these data as surveillance "intelligence." e.g., improvements to data collection and provision. A recent update of the fallen stock collections data has enabled a longer temporal period to be analyzed, with evidence of changes made in line with the recommendations. Further development will be required before a functional system can be implemented. However, there is potential for use of these data as: a proxy measure for mortality in the sheep population; complementary components in a future surveillance system, and to inform the design of additional surveillance system components., (Copyright © 2020 Tongue, Eze, Correia-Gomes, Brülisauer and Gunn.)
- Published
- 2020
- Full Text
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38. STOC Free: An Innovative Framework to Compare Probability of Freedom From Infection in Heterogeneous Control Programmes.
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van Roon AM, Santman-Berends IMGA, Graham D, More SJ, Nielen M, Madouasse A, Mercat M, Fourichon C, Gethmann J, Frössling J, Lindberg A, Correia-Gomes C, Gunn GJ, Sauter-Louis C, Henry MK, van Duijn L, and van Schaik G
- Abstract
The existence, stage of eradication and design of control programmes (CPs) for diseases that are not regulated by the EU differ between Member States. When freedom from infection is reached or being pursued, safe trade is essential to protect or reach that status. The aim of STOC free, a collaborative project between six countries, is to develop and validate a framework that enables a transparent and standardized comparison of confidence of freedom for CPs across herds, regions or countries. The framework consists of a model combined with a tool to facilitate the collection of the necessary parameters. All relevant actions taken in a CP are included in a Bayesian network model, which allows prior distributions for most parameters. In addition, frequency of occurrence and risk estimates for factors that influence either the probability of introduction or temporary misclassification leading to delayed detection of the infection are included in the model. Bovine viral diarrhea virus (BVDV) is used as an example disease. Many countries have CPs in place for BVDV and although elements of the CPs are similar, biosecurity measures and testing protocols, including types of tests and testing frequency, as well as target groups, differ widely. Although the initially developed framework is based on BVDV, the aim is to make it sufficiently generic to be adaptable to CPs for other diseases and possibly other species. Thus, STOC free will result in a single general framework, adaptable to multiple disease CPs, which aims to enhance the safety of trade.
- Published
- 2019
- Full Text
- View/download PDF
39. Liver gender dimorphism--insights from quantitative morphology.
- Author
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Marcos R, Correia-Gomes C, Miranda H, and Carneiro F
- Subjects
- Animals, Female, Hepatocytes ultrastructure, Humans, Kupffer Cells ultrastructure, Liver cytology, Male, Sex Characteristics, Liver anatomy & histology
- Abstract
It was shown recently that many genes are differentially expressed in the liver of males and females, thus strengthening the concept of liver gender dimorphism. This dimorphism exists in many pathological scenarios, from regeneration to fibrosis, which has led to the development of gender hepatology. Nevertheless, it is still unknown if gender dimorphism occurs in the structure of the normal liver. In recent years, it has been shown that, compared with male, the female rat liver bears less fibrotic tissue, more Kupffer cells (per volume unit) and has higher hepatocellularity, including binucleated hepatocytes (per volume unit). Our hypothesis is that the human liver also hides a gender dimorphic pattern. Baseline differences in fibrotic tissue would contribute to explain severe liver fibrosis in men. As to the disparity of Kupffer cells, this would clarify the stronger response to post-surgery infections in women, and it could be equated when appraising the higher susceptibility to alcohol. Regarding differences in hepatocytes, they not only justify existing differences in some liver parameters (e.g., transaminases and bilirubin), but they could also account for the higher regenerative potential of the female liver. The structural dimorphism in the human liver would sustain the concept of gender hepatology and, eventually, should be considered in the context of liver transplantation.
- Published
- 2015
- Full Text
- View/download PDF
40. Value of the Nottingham Histological Grading Parameters and Nottingham Prognostic Index in Canine Mammary Carcinoma.
- Author
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Santos M, Correia-Gomes C, Marcos R, Santos A, De Matos A, Lopes C, and Dias-Pereira P
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- Animals, Disease Progression, Disease-Free Survival, Dogs, Female, Neoplasm Grading methods, Prognosis, Retrospective Studies, Mammary Neoplasms, Animal pathology
- Abstract
Background/aim: In the past decade, the human Nottingham histological grade (NHG) has been applied to canine mammary carcinomas (CMC). The Nottingham Prognostic Index (NPI) enables identification of more aggressive human breast cancer. The prognostic value of grading parameters and NPI has never been detailed in CMC. The aim of the present study was to assess the prognostic value of NHG, its parameters and NPI., Materials and Methods: Univariable and multivariable analyses were used to assess the prognostic value of NHG, its parameters and NPI in a cohort of 59 dogs with CMC., Results: Short disease-free interval and overall survival were associated with higher NHG, particularly of grade III. Only high nuclear pleomorphism score was significantly associated with poor survival. NPI exhibited a strong predictive value for disease progression., Conclusion: NHG, nuclear pleomorphism and NPI have prognostic value in CMC. Nuclear pleomorphism is an independent prognostic factor. Evaluation of nuclear pleomorphism should be included in routine pathology reports., (Copyright© 2015 International Institute of Anticancer Research (Dr. John G. Delinassios), All rights reserved.)
- Published
- 2015
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