29 results on '"Engelmann, Ines"'
Search Results
2. Molecular characterisation of extended-spectrum ß-lactamase producing Escherichia coli in wild birds and cattle, Ibadan, Nigeria
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Fashae, Kayode, Engelmann, Ines, Monecke, Stefan, Braun, Sascha D., and Ehricht, Ralf
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- 2021
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3. Salient deliberative norm types in comment sections on news sites.
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Engelmann, Ines, Marzinkowski, Hanna, and Langmann, Klara
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SOCIAL norms , *POLITICAL science , *CONTENT analysis , *DEFAULT (Finance) - Abstract
Civil and argumentative public discussions are considered crucial for functioning democracies. Among other factors, the quality of user discussions of political issues on news sites depends on prevalent discussion norms. We integrate injunctive and descriptive norms into news comment research, assuming that the degree of salience of the respective norm influences the commenting behavior. Furthermore, we discuss how technical affordances such as default comment sorting determine the comment visibility and thus the salience of norms. Using data from a content analysis of 8162 comments on eight German news sites, we investigate how the two norm types influence deliberative forms of commenting. The results show that different types of salient injunctive and descriptive norms promote norm-compliant commenting. Furthermore, the default comment sorting can determine which comments are more or less salient. The results underline the importance of distinguishing different norm types in analyzing the quality of user comments in comment sections. [ABSTRACT FROM AUTHOR]
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- 2024
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4. From Shadows to Spotlight: Enhancing Bacterial DNA Detection in Blood Samples through Cutting-Edge Molecular Pre-Amplification.
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Reinicke, Martin, Braun, Sascha Daniel, Diezel, Celia, Lemuth, Oliver, Engelmann, Ines, Liebe, Theresa, and Ehricht, Ralf
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BACTERIAL DNA ,BLOOD sampling ,ESCHERICHIA coli ,BLOOD substitutes ,GRAM-negative bacteria ,BETA lactamases - Abstract
One of the greatest challenges to the use of molecular methods for diagnostic purposes is the detection of target DNA that is present only in low concentrations. One major factor that negatively impacts accuracy, diagnostic sensitivity, and specificity is the sample matrix, which hinders the attainment of the required detection limit due to the presence of residual background DNA. To address this issue, various methods have been developed to enhance sensitivity through targeted pre-amplification of marker sequences. Diagnostic sensitivity to the single molecular level is critical, particularly when identifying bloodstream infections. In cases of clinically manifest sepsis, the concentration of bacteria in the blood may reach as low as one bacterial cell/CFU per mL of blood. Therefore, it is crucial to achieve the highest level of sensitivity for accurate detection. In the present study, we have established a method that fills the analytical gap between low concentrations of molecular markers and the minimum requirements for molecular testing. For this purpose, a sample preparation of whole blood samples with a directly downstream pre-amplification was developed, which amplifies specific species and resistance markers in a multiplex procedure. When applying pre-amplification techniques, the sensitivity of the pathogen detection in whole blood samples was up to 100 times higher than in non-pre-amplified samples. The method was tested with blood samples that were spiked with several Gram-positive and Gram-negative bacterial pathogens. By applying this method to artificial spiked blood samples, it was possible to demonstrate a sensitivity of 1 colony-forming unit (CFU) per millilitre of blood for S. aureus and E. faecium. A detection limit of 28 and 383 CFU per ml of blood was achieved for E. coli and K. pneumoniae, respectively. If the sensitivity is also confirmed for real clinical blood samples from septic patients, the novel technique can be used for pathogen detection without cultivation, which might help to accelerate diagnostics and, thus, to decrease sepsis mortality rates. [ABSTRACT FROM AUTHOR]
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- 2024
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5. In/Visibility in the Digital Age: A Literature Review From a Communication Studies Perspective.
- Author
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STEHLE, HELENA, BOCK, ANNEKATRIN, WILHELM, CLAUDIA, SPRINGER, NINA, MAHRT, MERJA, LOBINGER, KATHARINA, LINKE, CHRISTINE, ENGELMANN, INES, DETEL, HANNE, and BRANTNER, CORNELIA
- Abstract
Visibility and its counterpart, invisibility, are critical concepts in digital communication, although research on these concepts in communication studies has rarely been reflected on in an integrative way. This article aims to map key discussions in current research on in/visibility from a communication studies perspective. Therefore, through a literature review, we elaborate on these discussions in research areas dealing extensively with in/visibility. The resulting mapping highlights similarities and differences between definitions of in/visibility and systematizes the various approaches according to three essential understandings (perceptibility, presence, and valuation) and three paradigmatic perspectives (functionalist, interpretive, and critical). The article offers a deeper understanding of the range of previous studies on the undertheorized concepts of in/visibility and demonstrates the concepts' potential for future research within communication studies. [ABSTRACT FROM AUTHOR]
- Published
- 2024
6. Perceiving politicians as true to themselves: Development and validation of the perceived political authenticity scale.
- Author
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Luebke, Simon M. and Engelmann, Ines
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CITIZENS , *POLITICAL candidates , *POLITICIANS , *MULTIDIMENSIONAL scaling , *ACADEMIC discourse - Abstract
The authenticity of political candidates receives increasing attention in political and academic discourse. Although being perceived as authentic is seen as a success factor in contemporary political communication, little attention has been paid to how citizens evaluate politicians' authenticity. The state of research thus lacks a valid instrument to measure citizens' perceptions of politicians' authenticity. This article addresses this gap in the literature and proposes a new multidimensional scale of perceived political authenticity. We conducted three consecutive studies to test the instrument's composition, performance, and validity and present a final 12-item scale. Results from an expert panel and two online quota surveys (Sample 1: N = 556, Sample 2: N = 1,210) show that citizens rely on three political authenticity dimensions to judge politicians' authenticity: ordinariness, consistency, and immediacy. Factor analyses were used to establish construct validity and demonstrate that the new scale is a robust and reliable measure. Finally, we find that higher perceived political authenticity for specific politicians is positively associated with party identification and the intention to vote for politicians. [ABSTRACT FROM AUTHOR]
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- 2023
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7. Rapid microarray-based DNA genoserotyping of Escherichia coli
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Geue, Lutz, Monecke, Stefan, Engelmann, Ines, Braun, Sascha, Slickers, Peter, and Ehricht, Ralf
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- 2014
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8. Occurrence, Phenotypic and Molecular Characteristics of Extended-Spectrum Beta-Lactamase-Producing Escherichia coli in Healthy Turkeys in Northern Egypt.
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Moawad, Amira A., Hotzel, Helmut, Hafez, Hafez M., Ramadan, Hazem, Tomaso, Herbert, Braun, Sascha D., Ehricht, Ralf, Diezel, Celia, Gary, Dominik, Engelmann, Ines, Zakaria, Islam M., Reda, Reem M., Eid, Samah, Shahien, Momtaz A., Neubauer, Heinrich, and Monecke, Stefan
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ESCHERICHIA coli ,PHENOTYPES ,KLEBSIELLA pneumoniae ,ANTI-infective agents ,CARBAPENEMASE ,DRUG resistance in microorganisms - Abstract
Poultry is one of the most important reservoirs for zoonotic multidrug-resistant pathogens. The indiscriminate use of antimicrobials in poultry production is a leading factor for development and dissemination of antimicrobial resistance. This study aimed to describe the prevalence and antimicrobial resistance of E. coli isolated from healthy turkey flocks of different ages in Nile delta region, Egypt. In the current investigation, 250 cloacal swabs were collected from 12 turkey farms in five governorates in the northern Egypt. Collected samples were cultivated on Brilliance
TM ESBL agar media supplemented with cefotaxime (100 mg/L). The E. coli isolates were identified using MALDI-TOF-MS and confirmed by a conventional PCR assay targeting 16S rRNA-DNA. The phenotypic antibiogram against 14 antimicrobial agents was determined using the broth micro-dilution method. DNA-microarray-based assay was applied for genotyping and determination of both, virulence and resistance-associated gene markers. Multiplex real-time PCR was additionally applied for all isolates for detection of the actual most relevant Carbapenemase genes. The phenotypic identification of colistin resistance was carried out using E-test. A total of 26 E. coli isolates were recovered from the cloacal samples. All isolates were defined as multidrug-resistant. Interestingly, two different E. coli strains were isolated from one sample. Both strains had different phenotypic and genotypic profiles. All isolates were phenotypically susceptible to imipenem, while resistant to penicillin, rifampicin, streptomycin, and erythromycin. None of the examined carbapenem resistance genes was detected among isolates. At least one beta-lactamase gene was identified in most of isolates, where blaTEM was the most commonly identified determinant (80.8%), in addition to blaCTX-M9 (23.1%), blaSHV (19.2%) and blaOXA-10 (15.4%). Genes associated with chloramphenicol resistance were floR (65.4%) and cmlA1 (46.2%). Tetracycline- and quinolone-resistance-associated genes tetA and qnrS were detected in (57.7%) and (50.0%) of isolates, respectively. The aminoglycoside resistance associated genes aadA1 (65.4%), aadA2 (53.8%), aphA (50.0%), strA (69.2%), and strB (65.4%), were detected among isolates. Macrolide resistance associated genes mph and mrx were also detected in (53.8%) and (34.6%). Moreover, colistin resistance associated gene mcr-9 was identified in one isolate (3.8%). The class 1 integron integrase intI1 (84.6%), transposase for the transposon tnpISEcp1 (34.6%) and OqxB -integral membrane and component of RND-type multidrug efflux pump oqxB (7.7%) were identified among the isolates. The existing high incidence of ESBL/colistin-producing E. coli identified in healthy turkeys is a major concern that demands prompt control; otherwise, such strains and their resistance determinants could be transmitted to other bacteria and, eventually, to people via the food chain. [ABSTRACT FROM AUTHOR]- Published
- 2022
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9. Comparison of clinical and immunological findings in gnotobiotic piglets infected with Escherichia coli O104:H4 outbreak strain and EHEC O157:H7
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Wochtl, Bettina, Gunzer, Florian, Gerner, Wilhelm, Gasse, Hagen, Koch, Michaela, Bago, Zoltan, Ganter, Martin, Weissenbock, Herbert, Dinhopl, Nora, Coldewey, Sina M., von Altrock, Alexandra, Waldmann, Karl-Heinz, Saalmuller, Armin, Zimmermann, Kurt, Steinmann, Jorg, Kehrmann, Jan, Klein-Hitpass, Ludger, Blom, Jochen, Ehricht, Ralf, Engelmann, Ines, and Hennig-Pauka, Isabel
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Clinical pathology -- Analysis ,Escherichia coli infections -- Research ,Swine -- Research -- Physiological aspects ,Immune response -- Analysis ,Health - Abstract
Author(s): Bettina Wöchtl[sup.1] , Florian Gunzer[sup.2] , Wilhelm Gerner[sup.3] , Hagen Gasse[sup.4] , Michaela Koch[sup.1] , Zoltán Bagó[sup.5] , Martin Ganter[sup.6] , Herbert Weissenböck[sup.7] , Nora Dinhopl[sup.7] , Sina M. [...]
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- 2017
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10. Do We Know Politicians' True Selves From the Media? Exploring the Relationship Between Political Media Exposure and Perceived Political Authenticity.
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Luebke, Simon M. and Engelmann, Ines
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- 2022
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11. A multiplex real-time PCR for the direct, fast, economic and simultaneous detection of the carbapenemase genes blaKPC, blaNDM, blaVIM and blaOXA-48
- Author
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Weiß, Daniel, Engelmann, Ines, Braun, Sascha D., Monecke, Stefan, and Ehricht, Ralf
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- 2017
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12. Effects of News Factors on Users' News Attention and Selective Exposure on a News Aggregator Website.
- Author
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Engelmann, Ines, Luebke, Simon M., and Kessler, Sabrina H.
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ATTENTION , *NEWS websites , *SELECTIVE exposure , *NEWS aggregators , *EYE tracking , *CONTENT analysis - Abstract
Do journalistic relevance criteria still matter in digital news environments where news is selected and aggregated by algorithms? This article investigates how news factors (e.g., conflict, power elite) influence users' news attention and selective exposure on the news aggregator website Google News. Alongside direct effects, the study also examines indirect effects of news factors on users' news selection processes via media cues of news items on the news aggregator website (e.g., picture, position, and recency). The study relies on the news value theory and analyzes observations of users' news attention and selective exposure on Google News via eye tracking (N = 47 participants, N = 751 news items). We conducted a content analysis on all news items on Google News that users paid attention to. The results show that news factors do not have direct effects on news attention and selective exposure, but rather indirect effects mediated via media cues of news items. Consequently, the traditional idea of newsworthiness based on professional journalistic norms continues to play a role on a news aggregator where news is selected by algorithms. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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13. Molecular characterisation of extendedspectrum ß-lactamase producing Escherichia coli in wild birds and cattle, Ibadan, Nigeria.
- Author
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Fashae, Kayode, Engelmann, Ines, Monecke, Stefan, Braun, Sascha D., and Ehricht, Ralf
- Abstract
Background: Antimicrobial resistance (AMR) is an increasing global health concern reducing options for therapy of infections and also for perioperative prophylaxis. Many Enterobacteriaceae cannot be treated anymore with third generation cephalosporins (3GC) due to the production of certain 3GC hydrolysing enzymes (extended spectrum beta-lactamases, ESBLs). The role of animals as carriers and vectors of multi-resistant bacteria in different geographical regions is poorly understood. Therefore, we investigated the occurrence and molecular characteristics of ESBL-producing Escherichia coli (E. coli) in wild birds and slaughtered cattle in Ibadan, Nigeria. Cattle faecal samples (n = 250) and wild bird pooled faecal samples (cattle egrets, Bubulcus ibis, n = 28; white-faced whistling duck, Dendrocygna viduata, n = 24) were collected and cultured on cefotaxime-eosin methylene blue agar. Antimicrobial susceptibility was determined by agar diffusion assays and all 3GC resistant isolates were genotypically characterised for AMR genes, virulence associated genes (VAGs) and serotypes using DNA microarraybased assays. Results: All 3GC resistant isolates were E. coli: cattle (n = 53), egrets (n = 87) and whistling duck (n = 4); cultured from 32/250 (12.8%), 26/28 (92.9%), 2/24(8.3%), cattle, egrets and whistling duck faecal samples, respectively. blaCTX-M gene family was prevalent; blaCTX-M15 (83.3%) predominated over blaCTX-M9 (11.8%). All were susceptible to carbapenems. The majority of isolates were resistant to at least one of the other tested antimicrobials; multidrug resistance was highest in the isolates recovered from egrets. The isolates harboured diverse repositories of other AMR genes (including strB and sul2), integrons (predominantly class 1) and VAGs. The isolates recovered from egrets harboured more AMR genes; eight were unique to these isolates including tetG, gepA, and floR. The prevalent VAGs included hemL and iss; while 14 (including sepA) were unique to certain animal isolates. E. coli serotypes O9:H9, O9:H30 and O9:H4 predominated. An identical phenotypic microarray profile was detected in three isolates from egrets and cattle, indicative of a clonal relationship amongst these isolates. Conclusion: Wild birds and cattle harbour diverse ESBL-producing E. coli populations with potential of inter-species dissemination and virulence. Recommended guidelines to balance public health and habitat conservation should be implemented with continuous surveillance. [ABSTRACT FROM AUTHOR]
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- 2021
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14. Influence of polymerase brand on microarray-based spoligotyping in low concentrations of mycobacterial DNA
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Monecke, Stefan, Engelmann, Ines, and Ehricht, Ralf
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- 2015
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15. Rapid culture-based identification of Shiga toxin-producing Escherichia coli and Shigella spp./Enteroinvasive E. coli using the eazyplex® EHEC complete assay.
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Penzel, Anika, Schützler, Katrin, Dröge, Jana, Mellmann, Alexander, Ehricht, Ralf, Engelmann, Ines, Braun, Sascha D., Schleenvoigt, Benjamin T., Löffler, Bettina, and Rödel, Jürgen
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SHIGELLOSIS ,SHIGELLA ,ESCHERICHIA coli ,DISEASE outbreaks ,FUNGAL cultures ,CHEMICAL sample preparation - Abstract
Shiga toxin–producing Escherichia coli (STEC) and Shigella spp./enteroinvasive E. coli (EIEC) are common diarrheagenic bacteria that cause sporadic diseases and outbreaks. Clinical manifestations vary from mild symptoms to severe complications. For microbiological diagnosis, culture confirmation of a positive stool screening PCR test is challenging because of time-consuming methods for isolation of strains, wide variety of STEC pathotypes, and increased emergence of non-classical strains with unusual serotypes. Therefore, molecular assays for the rapid identification of suspect colonies growing on selective media are very useful. In this study, the performance of the newly introduced eazyplex® EHEC assay based on loop-mediated isothermal amplification (LAMP) was evaluated using 18 representative STEC and Shigella strains and 31 isolates or positive-enrichment broths that were collected from clinical stool samples following screening by BD MAX™ EBP PCR. Results were compared to real-time PCR as a reference standard. Overall, sensitivities and specificities of the eazyplex® EHEC were as follows: 94.7% and 100% for Shiga toxin 1 (stx1), 100% and 100% for stx2, 93.3% and 97.1% for intimin (eae), 100% and 100% for enterohemolysin A (ehlyA), and 100% and 100% for invasion-associated plasmid antigen H (ipaH) as Shigella spp./EIEC target, respectively. Sample preparation for LAMP took only some minutes, and the time to result of the assay ranged from 8.5 to 13 min. This study shows that eazyplex® EHEC is a very fast and easy to perform molecular assay that provides reliable results as a culture confirmation assay for the diagnosis of STEC and Shigella spp./EIEC infections. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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16. Why do we click? Investigating reasons for user selection on a news aggregator website.
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Kessler, Sabrina Heike and Engelmann, Ines
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NEWS websites ,INTERNET forums ,SOCIAL media ,ELECTRONIC newspapers ,PRESS - Abstract
The aim of this study is to analyze the reasons behind users' selection of news results on the news aggregator website, Google News, and the role that news factors play in this selection. We assume that user's cognitive elaboration of users influences their news selection. In this study, a multi-method approach is used to obtain a complete picture of the users' news selection reasoning: an open survey, a closed survey, and a content analysis of screen recording data. The results were determined from online news selection of 90 news results from 47 users on Google News. Different news values could be identified as relevant for selection: time-referenced news factors and news factors of social significance were shown to be more important than the news factors of deviance. News cues (presence of a picture, position of a news result, source) were identified as selection reasons regardless of the level of cognitive elaboration during the online browsing process. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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17. Visibility Through Information Sharing: The Role of Tweet Authors and Communication Styles in Retweeting Political Information on Twitter.
- Author
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ENGELMANN, INES, KLOSS, ANDREA, NEUBERGER, CHRISTOPH, and BROCKMANN, TOBIAS
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INFORMATION sharing ,COMMUNICATION ,PUBLIC sphere ,HEURISTIC-systematic model (Communication) - Abstract
If a speaker's political message on Twitter is retweeted, both the speaker and the message become visible to a wider network of Twitter users, making the tweet actor more prominent on the Twittersphere or beyond. This study analyzes the effects of different types of tweet authors (such as politicians, journalists, economic actors, members of nonprofit interest groups, and citizens) and the communication styles of political information (affect and rationality) on the number of retweets. The potential effects of these factors are hypothesized based on the heuristic-systematic model but are also discussed in the normative context of public sphere theories. A content analysis of 4,403 tweets shows that the author types, communication styles, and their interactions affect the number of retweets. The theoretical and normative implications of these results are discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2019
18. Distribution of SCCmec-associated phenol-soluble modulin in staphylococci
- Author
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Monecke, Stefan, Engelmann, Ines, Archambault, Marie, Coleman, David C., Coombs, Geoffrey W., Cortez de Jäckel, Sonia, Pelletier-Jacques, Geneviève, Schwarz, Stefan, Shore, Anna C., Slickers, Peter, and Ehricht, Ralf
- Published
- 2012
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19. User Rankings and Journalistic News Selection.
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Wendelin, Manuel, Engelmann, Ines, and Neubarth, Julia
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JOURNALISM , *AUDIENCE response , *MASS media , *NEWS agencies , *NEWSPAPER publishing - Abstract
User rankings provide detailed information about the news selection of internet audiences. Due to the difficult economic situation of many publishing companies, newsrooms are increasingly forced to take these data into account. This paper contributes to the debate about an increasing audience orientation in journalism. We conducted a content analysis of various media outlets and user rankings in order to explore current differences between journalistic news selection and selections of the audience. Our comparison criteria include news values and topics. The results show similarities in news values, but differences in preferred topics. Finally, we discuss the opportunities and challenges presented by user rankings for the analysis of audience behavior. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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20. Journalismus und alltagsrationale Nachrichtenauswahl.
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Engelmann, Ines
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- 2016
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21. Journalismus und Framing.
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Scheufele, Bertram and Engelmann, Ines
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- 2016
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22. Comment Counts or News Factors or Both? Influences on News Website Users' News Selection.
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ENGELMANN, INES and WENDELIN, MANUEL
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NEWS websites ,INTERNET users ,POPULARITY ,JOURNALISM ,ONLINE comments - Abstract
In this article, we investigate how news selection on news websites is influenced by popularity indicators and news factor intensities. For Internet users, popularity indicators such as comment counts, published in the context of news items, might complement journalistic relevance attribution. We therefore conducted an experiment (N = 320) in which we investigated the impact of comment counts and news factor intensities on news selection. We found that comment counts did not affect the selection of associated news items, whereas news factors affected news selection positively. The implications of these results are discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2017
23. Surveillance of Extended-Spectrum Beta-Lactamase-Producing Escherichia coli in Dairy Cattle Farms in the Nile Delta, Egypt.
- Author
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Braun, Sascha D., Ahmed, Marwa F. E., El-Adawy, Hosny, Hotzel, Helmut, Engelmann, Ines, Weiß, Daniel, Monecke, Stefan, Ehricht, Ralf, Mathers, Amy J., and Luedtke, Brandon
- Subjects
GRAM-negative bacteria ,CEPHALOSPORINS - Abstract
Introduction: Industrial livestock farming is a possible source of multi-resistant Gram-negative bacteria, including producers of extended spectrum beta-lactamases (ESBLs) conferring resistance to 3rd generation cephalosporins. Limited information is currently available on the situation of ESBL producers in livestock farming outside of Western Europe. A surveillance study was conducted from January to May in 2014 in four dairy cattle farms in different areas of the Nile delta, Egypt. Materials and Methods: In total, 266 samples were collected from 4 dairy farms including rectal swabs from clinically healthy cattle (n = 210), and environmental samples from the stalls (n = 56). After 24 h pre-enrichment in buffered peptone water, all samples were screened for 3rd generation cephalosporin-resistant Escherichia coli using Brilliance ESBL agar. Suspected colonies of putatively ESBL-producing E. coli were sub-cultured and subsequently genotypically and phenotypically characterized. Susceptibility testing using the VITEK-2 system was performed. All suspect isolates were genotypically analyzed using two DNA-microarray based assays: CarbDetect AS-1 and E. coli PanType AS-2 kit (ALERE). These tests allow detection of a multitude of genes and their alleles associated with resistance toward carbapenems, cephalosporins, and other frequently used antibiotics. Serotypes were determined using the E. coli SeroGenotyping AS-1 kit (ALERE). Results: Out of 266 samples tested, 114 (42.8%) ESBL-producing E. coli were geno- and phenotypically identified. 113 of 114 phenotypically 3rd generation cephalosporin-resistant isolates harbored at least one of the ESBL resistance genes covered by the applied assays [blaCTX-M15 (n = 105), blaCTX-M9 (n = 1), blaTEM (n = 90), blaSHV (n = 1)]. Alarmingly, the carbapenemase genes blaOXA-48 (n = 5) and blaOXA-181 (n = 1) were found in isolates that also were phenotypically resistant to imipenem and meropenem. Using the array-based serogenotyping method, 66 of the 118 isolates (55%) could be genotypically assigned to O-types. Conclusion: This study is considered to be a first report of the high prevalence of ESBL-producing E. coli in dairy farms in Egypt. ESBL-producing E. coli isolates with different underlying resistance mechanisms are common in investigated dairy cattle farms in Egypt. The global rise of ESBL- and carbapenemase-producing Gram-negative bacteria is a big concern, and demands intensified surveillance. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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24. DNA-Microarray-based Genotyping of Clostridium difficile.
- Author
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Gawlik, Darius, Slickers, Peter, Engelmann, Ines, Müller, Elke, Lück, Christian, Friedrichs, Anette, Ehricht, Ralf, and Monecke, Stefan
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DNA microarrays ,CLOSTRIDIOIDES difficile ,DIARRHEA ,IMMOBILIZED nucleic acids ,CLOSTRIDIUM - Abstract
Background: Clostridium difficile can cause antibiotic-associated diarrhea and a possibility of outbreaks in hospital settings warrants molecular typing. A microarray was designed that included toxin genes (tcdA/B, cdtA/B), genes related to antimicrobial resistance, the slpA gene and additional variable genes. Results: DNA of six reference strains and 234 clinical isolates from South-Western and Eastern Germany was subjected to linear amplification and labeling with dUTP-linked biotin. Amplicons were hybridized to microarrays providing information on the presence of target genes and on their alleles. Tested isolates were assigned to 37 distinct profiles that clustered mainly according to MLST-defined clades. Three additional profiles were predicted from published genome sequences, although they were not found experimentally. Conclusions: The microarray based assay allows rapid and high-throughput genotyping of clinical C. difficile isolates including toxin gene detection and strain assignment. Overall hybridization profiles correlated with MLST-derived clades. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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25. User comments: motives and inhibitors to write and read.
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Springer, Nina, Engelmann, Ines, and Pfaffinger, Christian
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USER-generated content , *PUBLIC sphere , *DELAY of gratification , *INTERNET surveys - Abstract
User comments allow ‘annotative reporting’ by embedding users’ viewpoints within an article's context, providing readers with additional information to form opinions, which can potentially enhance deliberative processes. But are these the only reasons why people comment on online news and read these comments? This study examines factors that motivate, or demotivate and constrict, such participation by surveying nearly 650 commenters, lurkers, and non-users in Germany. From a normative perspective, the results are ambivalent. The results show that commenters are driven by social-interactive motives to participate in journalism, and to discuss with other users. However, the data suggest that commenters do not obtain cognitive gratifications to the desired extent. Presumably, their exchange is socially and not deliberatively motivated. Reading comments is fuelled by both cognitive and entertainment motives, but regression analyses show that the entertainment dimension − a dimension that is not usually considered to be linked to deliberation processes − is the more stable one. A low standard of discussions not only increases the frequency at which comments are read, but also reduces lurkers’ satisfaction. Similarly, non-users are even more frustrated by the low quality of discussions. They consider such participation activities to be a waste of time, and are not willing to register. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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26. Fast, economic and simultaneous identification of clinically relevant Gram-negative species with multiplex real-time PCR.
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Weiss D, Gawlik D, Hotzel H, Engelmann I, Mueller E, Slickers P, Braun SD, Monecke S, and Ehricht R
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- Acinetobacter baumannii genetics, DNA Primers genetics, DNA, Bacterial genetics, DNA, Bacterial isolation & purification, Escherichia coli genetics, Genome, Bacterial genetics, Humans, Klebsiella pneumoniae genetics, Limit of Detection, Multiplex Polymerase Chain Reaction economics, Pseudomonas aeruginosa genetics, Sensitivity and Specificity, Time Factors, Acinetobacter baumannii isolation & purification, Escherichia coli isolation & purification, Klebsiella pneumoniae isolation & purification, Pseudomonas aeruginosa isolation & purification
- Abstract
Aim: A newly designed multiplex real-time PCR (rt-PCR) was validated to detect four clinically relevant Gram-negative bacteria (Escherichia coli, Acinetobacter baumannii, Klebsiella pneumoniae and Pseudomonas aeruginosa)., Materials & Methods: Serial dilutions of genomic DNA were used to determine the limit of detection. Colony PCR was performed with isolates of the four selected species and other species as negative controls. Isolates were characterized genotypically and phenotypically to evaluate the assay., Results: Specific signals of all target genes were detected with diluted templates comprising ten genomic equivalents. Using colony rt-PCR, all isolates of the target species were identified correctly. All negative control isolates were negative., Conclusion: The genes gad, basC, khe and ecfX can reliably identify these four species via multiplex colony rt-PCR.
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- 2019
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27. Prevalence of carbapenemase-producing organisms at the Kidney Center of Rawalpindi (Pakistan) and evaluation of an advanced molecular microarray-based carbapenemase assay.
- Author
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Braun SD, Jamil B, Syed MA, Abbasi SA, Weiß D, Slickers P, Monecke S, Engelmann I, and Ehricht R
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- DNA, Bacterial genetics, Genotype, Gram-Negative Bacteria enzymology, Humans, Kidney Transplantation, Microbial Sensitivity Tests, Pakistan, Phenotype, Tertiary Care Centers, Bacterial Proteins genetics, Drug Resistance, Bacterial genetics, Gram-Negative Bacteria genetics, Gram-Negative Bacteria isolation & purification, Oligonucleotide Array Sequence Analysis, beta-Lactamases genetics
- Abstract
Aim: A DNA microarray-based assay for the detection of antimicrobial resistance (AMR) genes was used to study carbapenemase-producing organisms at the Kidney Center of Rawalpindi, Pakistan., Methods: The evaluation of this assay was performed using 97 reference strains with confirmed AMR genes. Testing of 7857 clinical samples identified 425 Gram-negative bacteria out of which 82 appeared carbapenem resistant. These isolates were analyzed using VITEK-2 for phenotyping and the described AMR assay for genotyping., Results: The most prevalent carbapenemase gene was blaNDM and in 12 isolates we detected two carbapenemase genes (e.g., blaNDM/blaOXA-48)., Conclusion: Our prevalence data from Pakistan show that - as in other parts of the world - carbapenemase-producing organisms with different underlying resistance mechanisms are emerging, and this warrants intensified and constant surveillance.
- Published
- 2018
- Full Text
- View/download PDF
28. Development of a rapid microarray-based DNA subtyping assay for the alleles of Shiga toxins 1 and 2 of Escherichia coli.
- Author
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Geue L, Stieber B, Monecke S, Engelmann I, Gunzer F, Slickers P, Braun SD, and Ehricht R
- Subjects
- Animals, Automation, Laboratory methods, Computational Biology methods, Escherichia coli Infections microbiology, Escherichia coli Infections veterinary, Humans, Shiga-Toxigenic Escherichia coli isolation & purification, Software, Genotyping Techniques methods, Microarray Analysis methods, Shiga Toxin 1 genetics, Shiga Toxin 2 genetics, Shiga-Toxigenic Escherichia coli classification, Shiga-Toxigenic Escherichia coli genetics
- Abstract
In this study, we developed a new rapid, economic, and automated microarray-based genotyping test for the standardized subtyping of Shiga toxins 1 and 2 of Escherichia coli. The microarrays from Alere Technologies can be used in two different formats, the ArrayTube and the ArrayStrip (which enables high-throughput testing in a 96-well format). One microarray chip harbors all the gene sequences necessary to distinguish between all Stx subtypes, facilitating the identification of single and multiple subtypes within a single isolate in one experiment. Specific software was developed to automatically analyze all data obtained from the microarray. The assay was validated with 21 Shiga toxin-producing E. coli (STEC) reference strains that were previously tested by the complete set of conventional subtyping PCRs. The microarray results showed 100% concordance with the PCR results. Essentially identical results were detected when the standard DNA extraction method was replaced by a time-saving heat lysis protocol. For further validation of the microarray, we identified the Stx subtypes or combinations of the subtypes in 446 STEC field isolates of human and animal origin. In summary, this oligonucleotide array represents an excellent diagnostic tool that provides some advantages over standard PCR-based subtyping. The number of the spotted probes on the microarrays can be increased by additional probes, such as for novel alleles, species markers, or resistance genes, should the need arise., (Copyright © 2014, American Society for Microbiology. All Rights Reserved.)
- Published
- 2014
- Full Text
- View/download PDF
29. Rapid spoligotyping of Mycobacterium tuberculosis complex bacteria by use of a microarray system with automatic data processing and assignment.
- Author
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Ruettger A, Nieter J, Skrypnyk A, Engelmann I, Ziegler A, Moser I, Monecke S, Ehricht R, and Sachse K
- Subjects
- High-Throughput Screening Assays methods, Humans, Time Factors, Electronic Data Processing methods, Molecular Typing methods, Mycobacterium tuberculosis classification, Mycobacterium tuberculosis genetics, Oligonucleotide Array Sequence Analysis methods
- Abstract
Membrane-based spoligotyping has been converted to DNA microarray format to qualify it for high-throughput testing. We have shown the assay's validity and suitability for direct typing from tissue and detecting new spoligotypes. Advantages of the microarray methodology include rapidity, ease of operation, automatic data processing, and affordability.
- Published
- 2012
- Full Text
- View/download PDF
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