381 results on '"Fenyö, David"'
Search Results
2. Dormant origin firing promotes head-on transcription-replication conflicts at transcription termination sites in response to BRCA2 deficiency
- Author
-
Goehring, Liana, Keegan, Sarah, Lahiri, Sudipta, Xia, Wenxin, Kong, Michael, Jimenez-Sainz, Judit, Gupta, Dipika, Drapkin, Ronny, Jensen, Ryan B., Smith, Duncan J., Rothenberg, Eli, Fenyö, David, and Huang, Tony T.
- Published
- 2024
- Full Text
- View/download PDF
3. Few-shot genes selection: subset of PAM50 genes for breast cancer subtypes classification
- Author
-
Okimoto, Leandro Y. S., Mendonca-Neto, Rayol, Nakamura, Fabíola G., Nakamura, Eduardo F., Fenyö, David, and Silva, Claudio T.
- Published
- 2024
- Full Text
- View/download PDF
4. A new generation of nanobody research tools using improved mass spectrometry-based discovery methods
- Author
-
Fridy, Peter C., Farrell, Ryan J., Molloy, Kelly R., Keegan, Sarah, Wang, Junjie, Jacobs, Erica Y., Li, Yinyin, Trivedi, Jill, Sehgal, Viren, Fenyö, David, Wu, Zhuhao, Chait, Brian T., and Rout, Michael P.
- Published
- 2024
- Full Text
- View/download PDF
5. Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening
- Author
-
Tan, Jimin, Shenker-Tauris, Nina, Rodriguez-Hernaez, Javier, Wang, Eric, Sakellaropoulos, Theodore, Boccalatte, Francesco, Thandapani, Palaniraja, Skok, Jane, Aifantis, Iannis, Fenyö, David, Xia, Bo, and Tsirigos, Aristotelis
- Published
- 2023
- Full Text
- View/download PDF
6. Multi-scale signaling and tumor evolution in high-grade gliomas
- Author
-
Liu, Jingxian, Cao, Song, Imbach, Kathleen J., Gritsenko, Marina A., Lih, Tung-Shing M., Kyle, Jennifer E., Yaron-Barir, Tomer M., Binder, Zev A., Li, Yize, Strunilin, Ilya, Wang, Yi-Ting, Tsai, Chia-Feng, Ma, Weiping, Chen, Lijun, Clark, Natalie M., Shinkle, Andrew, Naser Al Deen, Nataly, Caravan, Wagma, Houston, Andrew, Simin, Faria Anjum, Wyczalkowski, Matthew A., Wang, Liang-Bo, Storrs, Erik, Chen, Siqi, Illindala, Ritvik, Li, Yuping D., Jayasinghe, Reyka G., Rykunov, Dmitry, Cottingham, Sandra L., Chu, Rosalie K., Weitz, Karl K., Moore, Ronald J., Sagendorf, Tyler, Petyuk, Vladislav A., Nestor, Michael, Bramer, Lisa M., Stratton, Kelly G., Schepmoes, Athena A., Couvillion, Sneha P., Eder, Josie, Kim, Young-Mo, Gao, Yuqian, Fillmore, Thomas L., Zhao, Rui, Monroe, Matthew E., Southard-Smith, Austin N., Li, Yang E., Jui-Hsien Lu, Rita, Johnson, Jared L., Wiznerowicz, Maciej, Hostetter, Galen, Newton, Chelsea J., Ketchum, Karen A., Thangudu, Ratna R., Barnholtz-Sloan, Jill S., Wang, Pei, Fenyö, David, An, Eunkyung, Thiagarajan, Mathangi, Robles, Ana I., Mani, D.R., Smith, Richard D., Porta-Pardo, Eduard, Cantley, Lewis C., Iavarone, Antonio, Chen, Feng, Mesri, Mehdi, Nasrallah, MacLean P., Zhang, Hui, Resnick, Adam C., Chheda, Milan G., Rodland, Karin D., Liu, Tao, and Ding, Li
- Published
- 2024
- Full Text
- View/download PDF
7. Comprehensive proteogenomic characterization of rare kidney tumors
- Author
-
Lazar, Alexander J., Paulovich, Amanda G., Antczak, Andrzej, Green, Anthony, Ma’ayan, Avi, Pruetz, Barb, Zhang, Bing, Reva, Boris, Druker, Brian J., Goldthwaite, Charles A., Jr., Birger, Chet, Mani, D.R., Chesla, David, Fenyö, David, Schadt, Eric E., Wilson, George, Kołodziejczak, Iga, John, Ivy, Hafron, Jason, Vo, Josh, Zaalishvili, Kakhaber, Ketchum, Karen A., Rodland, Karin D., Nyce, Kristen, Wiznerowicz, Maciej, Domagalski, Marcin J., Anurag, Meenakshi, Borucki, Melissa, Gillette, Michael A., Birrer, Michael J., Edwards, Nathan J., Vatanian, Negin, VanderKolk, Pamela, McGarvey, Peter B., Dhir, Rajiv, Thangudu, Ratna R., Crispen, Reese, Smith, Richard D., Payne, Samuel H., Cottingham, Sandra, Cai, Shuang, Carr, Steven A., Liu, Tao, Le, Toan, Ma, Weiping, Zhang, Xu, Lu, Yin, Shutack, Yvonne, Zhang, Zhen, Li, Ginny Xiaohe, Chen, Lijun, Hsiao, Yi, Mannan, Rahul, Zhang, Yuping, Luo, Jie, Petralia, Francesca, Cho, Hanbyul, Hosseini, Noshad, Leprevost, Felipe da Veiga, Calinawan, Anna, Li, Yize, Anand, Shankara, Dagar, Aniket, Geffen, Yifat, Kumar-Sinha, Chandan, Chugh, Seema, Le, Anne, Ponce, Sean, Guo, Shenghao, Zhang, Cissy, Schnaubelt, Michael, Al Deen, Nataly Naser, Chen, Feng, Caravan, Wagma, Houston, Andrew, Hopkins, Alex, Newton, Chelsea J., Wang, Xiaoming, Polasky, Daniel A., Haynes, Sarah, Yu, Fengchao, Jing, Xiaojun, Chen, Siqi, Robles, Ana I., Mesri, Mehdi, Thiagarajan, Mathangi, An, Eunkyung, Getz, Gad A., Linehan, W. Marston, Hostetter, Galen, Jewell, Scott D., Chan, Daniel W., Wang, Pei, Omenn, Gilbert S., Mehra, Rohit, Ricketts, Christopher J., Ding, Li, Chinnaiyan, Arul M., Cieslik, Marcin P., Dhanasekaran, Saravana M., Zhang, Hui, and Nesvizhskii, Alexey I.
- Published
- 2024
- Full Text
- View/download PDF
8. CDK-independent role of D-type cyclins in regulating DNA mismatch repair
- Author
-
Rona, Gergely, Miwatani-Minter, Bearach, Zhang, Qingyue, Goldberg, Hailey V., Kerzhnerman, Marc A., Howard, Jesse B., Simoneschi, Daniele, Lane, Ethan, Hobbs, John W., Sassani, Elizabeth, Wang, Andrew A., Keegan, Sarah, Laverty, Daniel J., Piett, Cortt G., Pongor, Lorinc S., Xu, Miranda Li, Andrade, Joshua, Thomas, Anish, Sicinski, Piotr, Askenazi, Manor, Ueberheide, Beatrix, Fenyö, David, Nagel, Zachary D., and Pagano, Michele
- Published
- 2024
- Full Text
- View/download PDF
9. Pan-cancer proteogenomics characterization of tumor immunity
- Author
-
Abelin, Jennifer, Aguet, François, Akiyama, Yo, An, Eunkyung, Anand, Shankara, Anurag, Meenakshi, Babur, Özgün, Bavarva, Jasmin, Birger, Chet, Birrer, Michael J., Cao, Song, Carr, Steven A., Chan, Daniel W., Chinnaiyan, Arul M., Cho, Hanbyul, Clauser, Karl, Colaprico, Antonio, Zhou, Daniel Cui, da Veiga Leprevost, Felipe, Day, Corbin, Dhanasekaran, Saravana M., Ding, Li, Domagalski, Marcin J., Dou, Yongchao, Druker, Brian J., Edwards, Nathan, Ellis, Matthew J., Foltz, Steven M., Francis, Alicia, Geffen, Yifat, Getz, Gad, Heiman, David I., Hong, Runyu, Hu, Yingwei, Huang, Chen, Jaehnig, Eric J., Jewell, Scott D., Ji, Jiayi, Jiang, Wen, Katsnelson, Lizabeth, Ketchum, Karen A., Kolodziejczak, Iga, Krug, Karsten, Kumar-Sinha, Chandan, Lei, Jonathan T., Liang, Wen-Wei, Liao, Yuxing, Lindgren, Caleb M., Liu, Tao, Liu, Wenke, McDermott, Jason, McKerrow, Wilson, Mesri, Mehdi, Mumphrey, Michael Brodie, Newton, Chelsea J., Oldroyd, Robert, Payne, Samuel H., Pugliese, Pietro, Rodland, Karin D., Rodrigues, Fernanda Martins, Ruggles, Kelly V., Savage, Sara R., Schadt, Eric E., Schnaubelt, Michael, Schraink, Tobias, Schürer, Stephan, Shi, Zhiao, Smith, Richard D., Song, Feng, Song, Yizhe, Stathias, Vasileios, Storrs, Erik P., Tan, Jimin, Terekhanova, Nadezhda V., Thangudu, Ratna R., Thiagarajan, Mathangi, Wang, Liang-Bo, Wen, Bo, Wu, Yige, Wyczalkowski, Matthew A., Yao, Lijun, Li, Qing Kay, Zhang, Hui, Zhang, Qing, Zhang, Xu, Zhang, Zhen, Petralia, Francesca, Ma, Weiping, Yaron, Tomer M., Caruso, Francesca Pia, Tignor, Nicole, Wang, Joshua M., Charytonowicz, Daniel, Johnson, Jared L., Huntsman, Emily M., Marino, Giacomo B., Calinawan, Anna, Evangelista, John Erol, Selvan, Myvizhi Esai, Chowdhury, Shrabanti, Rykunov, Dmitry, Krek, Azra, Song, Xiaoyu, Turhan, Berk, Christianson, Karen E., Lewis, David A., Deng, Eden Z., Clarke, Daniel J.B., Whiteaker, Jeffrey R., Kennedy, Jacob J., Zhao, Lei, Segura, Rossana Lazcano, Batra, Harsh, Raso, Maria Gabriela, Parra, Edwin Roger, Soundararajan, Rama, Tang, Ximing, Li, Yize, Yi, Xinpei, Satpathy, Shankha, Wang, Ying, Wiznerowicz, Maciej, González-Robles, Tania J., Iavarone, Antonio, Gosline, Sara J.C., Reva, Boris, Robles, Ana I., Nesvizhskii, Alexey I., Mani, D.R., Gillette, Michael A., Klein, Robert J., Cieslik, Marcin, Zhang, Bing, Paulovich, Amanda G., Sebra, Robert, Gümüş, Zeynep H., Hostetter, Galen, Fenyö, David, Omenn, Gilbert S., Cantley, Lewis C., Ma'ayan, Avi, Lazar, Alexander J., Ceccarelli, Michele, and Wang, Pei
- Published
- 2024
- Full Text
- View/download PDF
10. MED19 encodes two unique protein isoforms that confer prostate cancer growth under low androgen through distinct gene expression programs
- Author
-
Ruoff, Rachel, Weber, Hannah, Wang, Ying, Huang, Hongying, Shapiro, Ellen, Fenyö, David, and Garabedian, Michael J.
- Published
- 2023
- Full Text
- View/download PDF
11. Staphylococcus aureus induces a muted host response in human blood that blunts the recruitment of neutrophils
- Author
-
Zwack, Erin E., Chen, Ze, Devlin, Joseph C., Li, Zhi, Zheng, Xuhui, Weinstock, Ada, Lacey, Keenan A., Fisher, Edward A., Fenyö, David, Ruggles, Kelly V., Loke, P’ng, and Torres, Victor J.
- Published
- 2022
12. The expression profile and tumorigenic mechanisms of CD97 (ADGRE5) in glioblastoma render it a targetable vulnerability
- Author
-
Ravn-Boess, Niklas, Roy, Nainita, Hattori, Takamitsu, Bready, Devin, Donaldson, Hayley, Lawson, Christopher, Lapierre, Cathryn, Korman, Aryeh, Rodrick, Tori, Liu, Enze, Frenster, Joshua D., Stephan, Gabriele, Wilcox, Jordan, Corrado, Alexis D., Cai, Julia, Ronnen, Rebecca, Wang, Shuai, Haddock, Sara, Sabio Ortiz, Jonathan, Mishkit, Orin, Khodadadi-Jamayran, Alireza, Tsirigos, Aris, Fenyö, David, Zagzag, David, Drube, Julia, Hoffmann, Carsten, Perna, Fabiana, Jones, Drew R., Possemato, Richard, Koide, Akiko, Koide, Shohei, Park, Christopher Y., and Placantonakis, Dimitris G.
- Published
- 2023
- Full Text
- View/download PDF
13. Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin
- Author
-
Aguet, François, Akiyama, Yo, An, Eunkyung, Anand, Shankara, Anurag, Meenakshi, Babur, Ozgun, Bavarva, Jasmin, Birger, Chet, Birrer, Michael, Calinawan, Anna, Cantley, Lewis C., Cao, Song, Carr, Steve, Ceccarelli, Michele, Chan, Daniel, Chinnaiyan, Arul, Cho, Hanbyul, Chowdhury, Shrabanti, Cieslik, Marcin, Clauser, Karl, Colaprico, Antonio, Zhou, Daniel Cui, da Veiga Leprevost, Felipe, Day, Corbin, Dhanasekaran, Mohan, Domagalski, Marcin, Dou, Yongchao, Druker, Brian, Edwards, Nathan, Ellis, Matthew, Selvan, Myvizhi Esai, Francis, Alicia, Getz, Gad, Gillette, Michael A., Robles, Tania Gonzalez, Gosline, Sara, Gümüş, Zeynep, Heiman, David, Hiltke, Tara, Hong, Runyu, Hostetter, Galen, Hu, Yingwei, Huang, Chen, Huntsman, Emily, Iavarone, Antonio, Jaehnig, Eric, Jewel, Scott, Ji, Jiayi, Jiang, Wen, Lee Johnson, Jared, Katsnelson, Lizabeth, Ketchum, Karen, Krug, Karsten, Kumar-Sinha, Chandan, Lei, Jonathan, Liao, Yuxing, Lindgren, Caleb, Liu, Tao, Liu, Wenke, Ma, Weiping, Rodrigues, Fernanda Martins, McKerrow, Wilson, Mesri, Mehdi, Nesvizhskii, Alexey I., Newton, Chelsea, Oldroyd, Robert, Omenn, Gilbert, Paulovich, Amanda, Petralia, Francesca, Pugliese, Pietro, Reva, Boris, Ruggles, Kelly, Rykunov, Dmitry, Satpathy, Shankha, Savage, Sara, Schadt, Eric, Schnaubelt, Michael, Schraink, Tobias, Shi, Zhiao, Smith, Dick, Song, Xiaoyu, Stathias, Vasileios, Storrs, Erik, Tan, Jimin, Terekhanova, Nadezhda, Thangudu, Ratna, Thiagarajan, Mathangi, Tignor, Nicole, Wang, Joshua, Wang, Liang-Bo, Wang, Pei, Wang, Ying (Cindy), Wen, Bo, Wu, Yige, Yao, Lijun, Yaron, Tomer M., Yi, Xinpei, Zhang, Bing, Zhang, Hui, Zhang, Qing, Zhang, Xu, Zhang, Zhen, Chan, Daniel W., Dhanasekaran, Saravana M., Schürer, Stephan, Smith, Richard D., Wyczalkowski, Matthew A., Liang, Wen-Wei, Lu, Rita Jui-Hsien, Jayasinghe, Reyka G., Foltz, Steven M., Porta-Pardo, Eduard, Geffen, Yifat, Wendl, Michael C., Lazcano, Rossana, Kolodziejczak, Iga, Song, Yizhe, Govindan, Akshay, Demicco, Elizabeth G., Li, Xiang, Li, Yize, Sethuraman, Sunantha, Payne, Samuel H., Fenyö, David, Rodriguez, Henry, Wiznerowicz, Maciej, Shen, Hui, Mani, D.R., Rodland, Karin D., Lazar, Alexander J., Robles, Ana I., and Ding, Li
- Published
- 2023
- Full Text
- View/download PDF
14. Proteogenomic insights suggest druggable pathways in endometrial carcinoma
- Author
-
Antczak, Andrzej, Anurag, Meenakshi, Bauer, Thomas, Birger, Chet, Birrer, Michael J., Borucki, Melissa, Cai, Shuang, Calinawan, Anna, Carr, Steven A., Castro, Patricia, Cerda, Sandra, Chan, Daniel W., Chesla, David, Cieslik, Marcin P., Cottingham, Sandra, Dhir, Rajiv, Domagalski, Marcin J., Druker, Brian J., Duffy, Elizabeth, Edwards, Nathan J., Edwards, Robert, Ellis, Matthew J., Eschbacher, Jennifer, Fam, Mina, Fevrier-Sullivan, Brenda, Francis, Jesse, Freymann, John, Gabriel, Stacey, Getz, Gad, Gillette, Michael A., Godwin, Andrew K., Goldthwaite, Charles A., Grady, Pamela, Hafron, Jason, Hariharan, Pushpa, Hindenach, Barbara, Hoadley, Katherine A., Huang, Jasmine, Ittmann, Michael M., Johnson, Ashlie, Jones, Corbin D., Ketchum, Karen A., Kirby, Justin, Le, Toan, Ma'ayan, Avi, Madan, Rashna, Mareedu, Sailaja, McGarvey, Peter B., Modugno, Francesmary, Montgomery, Rebecca, Nyce, Kristen, Paulovich, Amanda G., Pruetz, Barbara L., Qi, Liqun, Richey, Shannon, Schadt, Eric E., Shutack, Yvonne, Singh, Shilpi, Smith, Michael, Tansil, Darlene, Thangudu, Ratna R., Tobin, Matt, Um, Ki Sung, Vatanian, Negin, Webster, Alex, Wilson, George D., Wright, Jason, Zaalishvili, Kakhaber, Zhang, Zhen, Zhao, Grace, Dou, Yongchao, Katsnelson, Lizabeth, Gritsenko, Marina A., Hu, Yingwei, Reva, Boris, Hong, Runyu, Wang, Yi-Ting, Kolodziejczak, Iga, Lu, Rita Jui-Hsien, Tsai, Chia-Feng, Bu, Wen, Liu, Wenke, Guo, Xiaofang, An, Eunkyung, Arend, Rebecca C., Bavarva, Jasmin, Chen, Lijun, Chu, Rosalie K., Czekański, Andrzej, Davoli, Teresa, Demicco, Elizabeth G., DeLair, Deborah, Devereaux, Kelly, Dhanasekaran, Saravana M., Dottino, Peter, Dover, Bailee, Fillmore, Thomas L., Foxall, McKenzie, Hermann, Catherine E., Hiltke, Tara, Hostetter, Galen, Jędryka, Marcin, Jewell, Scott D., Johnson, Isabelle, Kahn, Andrea G., Ku, Amy T., Kumar-Sinha, Chandan, Kurzawa, Paweł, Lazar, Alexander J., Lazcano, Rossana, Lei, Jonathan T., Li, Yi, Liao, Yuxing, Lih, Tung-Shing M., Lin, Tai-Tu, Martignetti, John A., Masand, Ramya P., Matkowski, Rafał, McKerrow, Wilson, Mesri, Mehdi, Monroe, Matthew E., Moon, Jamie, Moore, Ronald J., Nestor, Michael D., Newton, Chelsea, Omelchenko, Tatiana, Omenn, Gilbert S., Payne, Samuel H., Petyuk, Vladislav A., Robles, Ana I., Rodriguez, Henry, Ruggles, Kelly V., Rykunov, Dmitry, Savage, Sara R., Schepmoes, Athena A., Shi, Tujin, Shi, Zhiao, Tan, Jimin, Taylor, Mason, Thiagarajan, Mathangi, Wang, Joshua M., Weitz, Karl K., Wen, Bo, Williams, C.M., Wu, Yige, Wyczalkowski, Matthew A., Yi, Xinpei, Zhang, Xu, Zhao, Rui, Mutch, David, Chinnaiyan, Arul M., Smith, Richard D., Nesvizhskii, Alexey I., Wang, Pei, Wiznerowicz, Maciej, Ding, Li, Mani, D.R., Zhang, Hui, Anderson, Matthew L., Rodland, Karin D., Zhang, Bing, Liu, Tao, and Fenyö, David
- Published
- 2023
- Full Text
- View/download PDF
15. Pan-cancer proteogenomics connects oncogenic drivers to functional states
- Author
-
An, Eunkyung, Anurag, Meenakshi, Bavarva, Jasmin, Birrer, Michael J., Calinawan, Anna, Ceccarelli, Michele, Chan, Daniel W., Chinnaiyan, Arul M., Cho, Hanbyul, Chowdhury, Shrabanti, Cieslik, Marcin P., da Veiga Leprevost, Felipe, Day, Corbin, Domagalski, Marcin J., Dou, Yongchao, Druker, Brian J., Edwards, Nathan, Ellis, Matthew J., Selvan, Myvizhi Esai, Foltz, Steven M., Francis, Alicia, Gonzalez Robles, Tania J., Gosline, Sara J.C., Gümüş, Zeynep H., Hiltke, Tara, Hong, Runyu, Hostetter, Galen, Hu, Yingwei, Huang, Chen, Huntsman, Emily, Jaehnig, Eric J., Jewel, Scott D., Ji, Jiayi, Jiang, Wen, Katsnelson, Lizabeth, Ketchum, Karen A., Kolodziejczak, Iga, Lei, Jonathan T., Liao, Yuxing, Lindgren, Caleb M., Liu, Tao, Ma, Weiping, McKerrow, Wilson, Nesvizhskii, Alexey I., Newton, Chelsea, Oldroyd, Robert, Omenn, Gilbert S., Paulovich, Amanda G., Petralia, Francesca, Reva, Boris, Rodland, Karin D., Ruggles, Kelly V., Rykunov, Dmitry, Savage, Sara R., Schadt, Eric E., Schnaubelt, Michael, Schraink, Tobias, Shi, Zhiao, Smith, Richard D., Song, Xiaoyu, Tan, Jimin, Thangudu, Ratna R., Tignor, Nicole, Wang, Joshua M., Wang, Pei, Wang, Ying (Cindy), Wen, Bo, Wiznerowicz, Maciej, Yi, Xinpei, Zhang, Bing, Zhang, Hui, Zhang, Xu, Zhang, Zhen, Li, Yize, Porta-Pardo, Eduard, Tokheim, Collin, Bailey, Matthew H., Yaron, Tomer M., Stathias, Vasileios, Geffen, Yifat, Imbach, Kathleen J., Cao, Song, Anand, Shankara, Akiyama, Yo, Liu, Wenke, Wyczalkowski, Matthew A., Song, Yizhe, Storrs, Erik P., Wendl, Michael C., Zhang, Wubing, Sibai, Mustafa, Ruiz-Serra, Victoria, Liang, Wen-Wei, Terekhanova, Nadezhda V., Rodrigues, Fernanda Martins, Clauser, Karl R., Heiman, David I., Zhang, Qing, Aguet, Francois, Calinawan, Anna P., Dhanasekaran, Saravana M., Birger, Chet, Satpathy, Shankha, Zhou, Daniel Cui, Wang, Liang-Bo, Baral, Jessika, Johnson, Jared L., Huntsman, Emily M., Pugliese, Pietro, Colaprico, Antonio, Iavarone, Antonio, Chheda, Milan G., Ricketts, Christopher J., Fenyö, David, Payne, Samuel H., Rodriguez, Henry, Robles, Ana I., Gillette, Michael A., Kumar-Sinha, Chandan, Lazar, Alexander J., Cantley, Lewis C., Getz, Gad, and Ding, Li
- Published
- 2023
- Full Text
- View/download PDF
16. Proteogenomic data and resources for pan-cancer analysis
- Author
-
Lazar, Alexander J., Paulovich, Amanda G., Colaprico, Antonio, Iavarone, Antonio, Chinnaiyan, Arul M., Druker, Brian J., Kumar-Sinha, Chandan, Newton, Chelsea J., Huang, Chen, Mani, D.R., Smith, Richard D., Huntsman, Emily, Schadt, Eric E., An, Eunkyung, Petralia, Francesca, Hostetter, Galen, Omenn, Gilbert S., Cho, Hanbyul, Rodriguez, Henry, Zhang, Hui, Kolodziejczak, Iga, Johnson, Jared L., Bavarva, Jasmin, Tan, Jimin, Rodland, Karin D., Clauser, Karl R., Krug, Karsten, Cantley, Lewis C., Wiznerowicz, Maciej, Ellis, Matthew J., Anurag, Meenakshi, Mesri, Mehdi, Gillette, Michael A., Birrer, Michael J., Ceccarelli, Michele, Dhanasekaran, Saravana M., Edwards, Nathan, Tignor, Nicole, Babur, Özgün, Pugliese, Pietro, Gosline, Sara J.C., Jewell, Scott D., Satpathy, Shankha, Chowdhury, Shrabanti, Schürer, Stephan, Carr, Steven A., Liu, Tao, Hiltke, Tara, Yaron, Tomer M., Stathias, Vasileios, Liu, Wenke, Zhang, Xu, Song, Yizhe, Zhang, Zhen, Chan, Daniel W., Li, Yize, Dou, Yongchao, Da Veiga Leprevost, Felipe, Geffen, Yifat, Calinawan, Anna P., Aguet, François, Akiyama, Yo, Anand, Shankara, Birger, Chet, Cao, Song, Chaudhary, Rekha, Chilappagari, Padmini, Cieslik, Marcin, Zhou, Daniel Cui, Day, Corbin, Domagalski, Marcin J., Esai Selvan, Myvizhi, Fenyö, David, Foltz, Steven M., Francis, Alicia, Gonzalez-Robles, Tania, Gümüş, Zeynep H., Heiman, David, Holck, Michael, Hong, Runyu, Hu, Yingwei, Jaehnig, Eric J., Ji, Jiayi, Jiang, Wen, Katsnelson, Lizabeth, Ketchum, Karen A., Klein, Robert J., Lei, Jonathan T., Liang, Wen-Wei, Liao, Yuxing, Lindgren, Caleb M., Ma, Weiping, Ma, Lei, MacCoss, Michael J., Martins Rodrigues, Fernanda, McKerrow, Wilson, Nguyen, Ngoc, Oldroyd, Robert, Pilozzi, Alexander, Reva, Boris, Rudnick, Paul, Ruggles, Kelly V., Rykunov, Dmitry, Savage, Sara R., Schnaubelt, Michael, Schraink, Tobias, Shi, Zhiao, Singhal, Deepak, Song, Xiaoyu, Storrs, Erik, Terekhanova, Nadezhda V., Thangudu, Ratna R., Thiagarajan, Mathangi, Wang, Liang-Bo, Wang, Joshua M., Wang, Ying, Wen, Bo, Wu, Yige, Wyczalkowski, Matthew A., Xin, Yi, Yao, Lijun, Yi, Xinpei, Zhang, Qing, Zuhl, Maya, Getz, Gad, Ding, Li, Nesvizhskii, Alexey I., Wang, Pei, Robles, Ana I., Zhang, Bing, and Payne, Samuel H.
- Published
- 2023
- Full Text
- View/download PDF
17. PhosphoDisco: A Toolkit for Co-regulated Phosphorylation Module Discovery in Phosphoproteomic Data
- Author
-
Schraink, Tobias, Blumenberg, Lili, Hussey, Grant, George, Sabrina, Miller, Brecca, Mathew, Nithu, González-Robles, Tania J., Sviderskiy, Vladislav, Papagiannakopoulos, Thales, Possemato, Richard, Fenyö, David, and Ruggles, Kelly V.
- Published
- 2023
- Full Text
- View/download PDF
18. LINE-1 expression in cancer correlates with p53 mutation, copy number alteration, and S phase checkpoint
- Author
-
McKerrow, Wilson, Wang, Xuya, Mendez-Dorantes, Carlos, Mita, Paolo, Cao, Song, Grivainis, Mark, Ding, Li, LaCava, John, Burns, Kathleen H., Boeke, Jef D., and Fenyö, David
- Published
- 2022
19. KaryoCreate: A CRISPR-based technology to study chromosome-specific aneuploidy by targeting human centromeres
- Author
-
Bosco, Nazario, Goldberg, Aleah, Zhao, Xin, Mays, Joseph C., Cheng, Pan, Johnson, Adam F., Bianchi, Joy J., Toscani, Cecilia, Di Tommaso, Elena, Katsnelson, Lizabeth, Annuar, Dania, Mei, Sally, Faitelson, Roni E., Pesselev, Ilan Y., Mohamed, Kareem S., Mermerian, Angela, Camacho-Hernandez, Elaine M., Gionco, Courtney A., Manikas, Julie, Tseng, Yi-Shuan, Sun, Zhengxi, Fani, Somayeh, Keegan, Sarah, Lippman, Scott M., Fenyö, David, Giunta, Simona, Santaguida, Stefano, and Davoli, Teresa
- Published
- 2023
- Full Text
- View/download PDF
20. Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness
- Author
-
Francis, Alicia, Paulovich, Amanda G., Antczak, Andrzej, Green, Anthony, Colaprico, Antonio, Hakimi, Ari, Pruetz, Barb, Hindenach, Barbara, Yadav, Birendra Kumar, Reva, Boris, Fevrier-Sullivan, Brenda, Druker, Brian J., Szczylik, Cezary, Goldthwaite, Charles A., Jr., Birger, Chet, Jones, Corbin D., Rohrer, Daniel C., Tansil, Darlene, Chesla, David, Heiman, David, Duffy, Elizabeth, Schadt, Eri E., Petralia, Francesca, Bromiński, Gabriel, Quiroga-Garza, Gabriela M., Wilson, George D., Li, Ginny Xiaohe, Zhao, Grace, Hsiao, Yi, Hsieh, James, Lubiński, Jan, Bavarva, Jasmin, Huang, Jasmine, Hafron, Jason, Eschbacher, Jennifer, Hon, Jennifer, Francis, Jesse, Freymann, John, Vo, Josh, Wang, Joshua, Kirby, Justin, Zaalishvili, Kakhaber, Ketchum, Karen A., Hoadley, Katherine A., Um, Ki Sung, Qi, Liqun, Domagalski, Marcin J., Tobin, Matt, Dyer, Maureen, Anurag, Meenakshi, Borucki, Melissa, Gillette, Michael A., Birrer, Michael J., Ittmann, Michael M., Roehrl, Michael H., Schnaubelt, Michael, Smith, Michael, Fam, Mina, Roche, Nancy, Vatanian, Negin, Maunganidze, Nicollette, Potapova, Olga, Paklina, Oxana V., VanderKolk, Pamela, Castro, Patricia, Kurzawa, Paweł, Hariharan, Pushpa, Li, Qin, Li, Qing Kay, Dhir, Rajiv, Thangudu, Ratna R., Montgomery, Rebecca, Smith, Richard D., Mareedu, Sailaja, Payne, Samuel H., Cerda, Sandra, Cottingham, Sandra, Haynes, Sarah, Satpathy, Shankha, Richey, Shannon, Singh, Shilpi, Tsang, Shirley X., Cai, Shuang, Cao, Song, Gabriel, Stacey, Carr, Steven A., Liu, Tao, Bauer, Thomas, Le, Toan, Chen, Xi S., Zhang, Xu, Shutack, Yvonne, Zhang, Zhen, Li, Yize, Lih, Tung-Shing M., Dhanasekaran, Saravana M., Mannan, Rahul, Chen, Lijun, Cieslik, Marcin, Wu, Yige, Lu, Rita Jiu-Hsien, Clark, David J., Kołodziejczak, Iga, Hong, Runyu, Chen, Siqi, Zhao, Yanyan, Chugh, Seema, Caravan, Wagma, Naser Al Deen, Nataly, Hosseini, Noshad, Newton, Chelsea J., Krug, Karsten, Xu, Yuanwei, Cho, Kyung-Cho, Hu, Yingwei, Zhang, Yuping, Kumar-Sinha, Chandan, Ma, Weiping, Calinawan, Anna, Wyczalkowski, Matthew A., Wendl, Michael C., Wang, Yuefan, Guo, Shenghao, Zhang, Cissy, Le, Anne, Dagar, Aniket, Hopkins, Alex, Cho, Hanbyul, Leprevost, Felipe da Veiga, Jing, Xiaojun, Teo, Guo Ci, Liu, Wenke, Reimers, Melissa A., Pachynski, Russell, Lazar, Alexander J., Chinnaiyan, Arul M., Van Tine, Brian A., Zhang, Bing, Rodland, Karin D., Getz, Gad, Mani, D.R., Wang, Pei, Chen, Feng, Hostetter, Galen, Thiagarajan, Mathangi, Linehan, W. Marston, Fenyö, David, Jewell, Scott D., Omenn, Gilbert S., Mehra, Rohit, Wiznerowicz, Maciej, Robles, Ana I., Mesri, Mehdi, Hiltke, Tara, An, Eunkyung, Rodriguez, Henry, Chan, Daniel W., Ricketts, Christopher J., Nesvizhskii, Alexey I., Zhang, Hui, and Ding, Li
- Published
- 2023
- Full Text
- View/download PDF
21. Human transposon insertion profiling by sequencing (TIPseq) to map LINE-1 insertions in single cells
- Author
-
McKerrow, Wilson, Tang, Zuojian, Steranka, Jared P., Payer, Lindsay M., Boeke, Jef D., Keefe, David, Fenyö, David, Burns, Kathleen H., and Liu, Chunhong
- Published
- 2020
22. Predicting endometrial cancer subtypes and molecular features from histopathology images using multi-resolution deep learning models
- Author
-
Hong, Runyu, Liu, Wenke, DeLair, Deborah, Razavian, Narges, and Fenyö, David
- Published
- 2021
- Full Text
- View/download PDF
23. Proteogenomic characterization of pancreatic ductal adenocarcinoma
- Author
-
Amin, Mitual, An, Eunkyung, Ayad, Christina, Bauer, Thomas, Birger, Chet, Birrer, Michael J., Boca, Simina M., Bocik, William, Borucki, Melissa, Cai, Shuang, Carr, Steven A., Cerda, Sandra, Chen, Huan, Chen, Steven, Chesla, David, Chinnaiyan, Arul M., Colaprico, Antonio, Cottingham, Sandra, Derejska, Magdalena, Dhanasekaran, Saravana M., Domagalski, Marcin J., Druker, Brian J., Duffy, Elizabeth, Dyer, Maureen A., Edwards, Nathan J., Ellis, Matthew J., Eschbacher, Jennifer, Francis, Alicia, Francis, Jesse, Gabriel, Stacey, Gabrovski, Nikolay, Gardner, Johanna, Getz, Gad, Gillette, Michael A., Goldthwaite, Charles A., Jr., Grady, Pamela, Guo, Shuai, Hariharan, Pushpa, Hiltke, Tara, Hindenach, Barbara, Hoadley, Katherine A., Huang, Jasmine, Jones, Corbin D., Ketchum, Karen A., Kinsinger, Christopher R., Koziak, Jennifer M., Kusnierz, Katarzyna, Liu, Tao, Long, Jiang, Mallery, David, Mareedu, Sailaja, Matteotti, Ronald, Maunganidze, Nicollette, McGarvey, Peter B., Minoo, Parham, Paklina, Oxana V., Paulovich, Amanda G., Payne, Samuel H., Potapova, Olga, Pruetz, Barbara, Qi, Liqun, Roche, Nancy, Rodland, Karin D., Rohrer, Daniel C., Schadt, Eric E., Shabunin, Alexey V., Shelton, Troy, Shutack, Yvonne, Singh, Shilpi, Smith, Michael, Smith, Richard D., Sokoll, Lori J., Suh, James, Thangudu, Ratna R., Tsang, Shirley X., Um, Ki Sung, Valley, Dana R., Vatanian, Negin, Wang, Wenyi, Wilson, George D., Wiznerowicz, Maciej, Zhang, Zhen, Zhao, Grace, Cao, Liwei, Huang, Chen, Cui Zhou, Daniel, Hu, Yingwei, Lih, T. Mamie, Savage, Sara R., Krug, Karsten, Clark, David J., Schnaubelt, Michael, Chen, Lijun, da Veiga Leprevost, Felipe, Eguez, Rodrigo Vargas, Yang, Weiming, Pan, Jianbo, Wen, Bo, Dou, Yongchao, Jiang, Wen, Liao, Yuxing, Shi, Zhiao, Terekhanova, Nadezhda V., Cao, Song, Lu, Rita Jui-Hsien, Li, Yize, Liu, Ruiyang, Zhu, Houxiang, Ronning, Peter, Wu, Yige, Wyczalkowski, Matthew A., Easwaran, Hariharan, Danilova, Ludmila, Mer, Arvind Singh, Yoo, Seungyeul, Wang, Joshua M., Liu, Wenke, Haibe-Kains, Benjamin, Thiagarajan, Mathangi, Jewell, Scott D., Hostetter, Galen, Newton, Chelsea J., Li, Qing Kay, Roehrl, Michael H., Fenyö, David, Wang, Pei, Nesvizhskii, Alexey I., Mani, D.R., Omenn, Gilbert S., Boja, Emily S., Mesri, Mehdi, Robles, Ana I., Rodriguez, Henry, Bathe, Oliver F., Chan, Daniel W., Hruban, Ralph H., Ding, Li, Zhang, Bing, and Zhang, Hui
- Published
- 2021
- Full Text
- View/download PDF
24. A proteogenomic portrait of lung squamous cell carcinoma
- Author
-
Green, Alex, Molinolo, Alfredo, Francis, Alicia, Paulovich, Amanda G., Karnuta, Andrii, Colaprico, Antonio, Hindenach, Barbara, Pruetz, Barbara L., Kubisa, Bartosz, Druker, Brian J., Huynh, Carissa, Goldthwaite, Charles A., Jr., Birger, Chet, Kinsinger, Christopher R., Jones, Corbin D., Rohrer, Dan, Valley, Dana R., Chan, Daniel W., Chesla, David, Hansel, Donna, Ponomareva, Elena V., Duffy, Elizabeth, Burks, Eric, Schadt, Eric E., Fedorov, Eugene S., An, Eunkyung, Ding, Fei, Wilson, George D., Batra, Harsh, Zhang, Hui, Maas, Jennifer E., Eschbacher, Jennifer, Ketchum, Karen A., Rodland, Karin D., Hoadley, Katherine A., Suzuki, Kei, Um, Ki Sung, Qi, Liqun, Bernard, Lori, Wiznerowicz, Maciej, Wojtyś, Małgorzata, Domagalski, Marcin J., Ellis, Matthew J., Dyer, Maureen A., Borucki, Melissa, Anurag, Meenakshi, Birrer, Michael J., Xu, Midie, Krotevich, Mikhail, Roche, Nancy, Edwards, Nathan J., Vatanian, Negin, Mucci, Neil R., Maunganidze, Nicollette, Gabrovski, Nikolay, Potapova, Olga, Fadare, Oluwole, Grady, Pamela, McGarvey, Peter B., Hariharan, Pushpa, Thangudu, Ratna R., Montgomery, Rebecca, Pandurengan, Renganayaki, Smith, Richard D., Welsh, Robert J., Mareedu, Sailaja, Payne, Samuel H., Cottingham, Sandra, Singh, Shilpi, Tsang, Shirley X., Cai, Shuang, Gabriel, Stacey, Liu, Tao, Hiltke, Tara, Vashist, Tanmayi, Bauer, Thomas, Sovenko, Volodymyr, Tourtellotte, Warren G., Ma, Weiping, Bocik, William, Hasan, Wohaib, Jing, Xiaojun, Tang, Ximing, Liao, Yuxing, Yvonne, Shutack, Zhang, Zhen, Hanhan, Ziad, Satpathy, Shankha, Krug, Karsten, Jean Beltran, Pierre M., Savage, Sara R., Petralia, Francesca, Kumar-Sinha, Chandan, Dou, Yongchao, Reva, Boris, Kane, M. Harry, Avanessian, Shayan C., Vasaikar, Suhas V., Krek, Azra, Lei, Jonathan T., Jaehnig, Eric J., Omelchenko, Tatiana, Geffen, Yifat, Bergstrom, Erik J., Stathias, Vasileios, Christianson, Karen E., Heiman, David I., Cieslik, Marcin P., Cao, Song, Song, Xiaoyu, Ji, Jiayi, Liu, Wenke, Li, Kai, Wen, Bo, Li, Yize, Gümüş, Zeynep H., Selvan, Myvizhi Esai, Soundararajan, Rama, Visal, Tanvi H., Raso, Maria G., Parra, Edwin Roger, Babur, Özgün, Vats, Pankaj, Anand, Shankara, Schraink, Tobias, Cornwell, MacIntosh, Rodrigues, Fernanda Martins, Zhu, Houxiang, Mo, Chia-Kuei, Zhang, Yuping, da Veiga Leprevost, Felipe, Huang, Chen, Chinnaiyan, Arul M., Wyczalkowski, Matthew A., Omenn, Gilbert S., Newton, Chelsea J., Schurer, Stephan, Ruggles, Kelly V., Fenyö, David, Jewell, Scott D., Thiagarajan, Mathangi, Mesri, Mehdi, Rodriguez, Henry, Mani, Sendurai A., Udeshi, Namrata D., Getz, Gad, Suh, James, Li, Qing Kay, Hostetter, Galen, Paik, Paul K., Dhanasekaran, Saravana M., Govindan, Ramaswamy, Ding, Li, Robles, Ana I., Clauser, Karl R., Nesvizhskii, Alexey I., Wang, Pei, Carr, Steven A., Zhang, Bing, Mani, D.R., and Gillette, Michael A.
- Published
- 2021
- Full Text
- View/download PDF
25. The role of retrotransposable elements in ageing and age-associated diseases
- Author
-
Gorbunova, Vera, Seluanov, Andrei, Mita, Paolo, McKerrow, Wilson, Fenyö, David, Boeke, Jef D., Linker, Sara B., Gage, Fred H., Kreiling, Jill A., Petrashen, Anna P., Woodham, Trenton A., Taylor, Jackson R., Helfand, Stephen L., and Sedivy, John M.
- Published
- 2021
- Full Text
- View/download PDF
26. Proteogenomic and metabolomic characterization of human glioblastoma
- Author
-
Agarwal, Anupriya, Amin, Mitual, An, Eunkyung, Anderson, Matthew L., Andrews, David W., Bauer, Thomas, Birger, Chet, Birrer, Michael J., Blumenberg, Lili, Bocik, William E., Borate, Uma, Borucki, Melissa, Burke, Meghan C., Cai, Shuang, Calinawan, Anna P., Carr, Steven A., Cerda, Sandra, Chan, Daniel W., Charamut, Alyssa, Chen, Lin S., Chesla, David, Chinnaiyan, Arul M., Chowdhury, Shrabanti, Cieślik, Marcin P., Clark, David J., Culpepper, Houston, Czernicki, Tomasz, D'Angelo, Fulvio, Day, Jacob, De Young, Stephanie, Demir, Emek, Dhanasekaran, Saravana Mohan, Dhir, Rajiv, Domagalski, Marcin J., Druker, Brian, Duffy, Elizabeth, Dyer, Maureen, Edwards, Nathan J., Edwards, Robert, Elburn, Kimberly, Ellis, Matthew J., Eschbacher, Jennifer, Francis, Alicia, Gabriel, Stacey, Gabrovski, Nikolay, Garofano, Luciano, Getz, Gad, Gillette, Michael A., Godwin, Andrew K., Golbin, Denis, Hanhan, Ziad, Hannick, Linda I., Hariharan, Pushpa, Hindenach, Barbara, Hoadley, Katherine A., Hostetter, Galen, Huang, Chen, Jaehnig, Eric, Jewell, Scott D., Ji, Nan, Jones, Corbin D., Karz, Alcida, Kaspera, Wojciech, Kim, Lyndon, Kothadia, Ramani B., Kumar-Sinha, Chandan, Lei, Jonathan, Leprevost, Felipe D., Li, Kai, Liao, Yuxing, Lilly, Jena, Liu, Hongwei, Lubínski, Jan, Madan, Rashna, Maggio, William, Malc, Ewa, Malovannaya, Anna, Mareedu, Sailaja, Markey, Sanford P., Marrero-Oliveras, Annette, Martinez, Nina, Maunganidze, Nicollette, McDermott, Jason E., McGarvey, Peter B., McGee, John, Mieczkowski, Piotr, Migliozzi, Simona, Modugno, Francesmary, Montgomery, Rebecca, Newton, Chelsea J., Omenn, Gilbert S., Ozbek, Umut, Paklina, Oxana V., Paulovich, Amanda G., Perou, Amy M., Pico, Alexander R., Piehowski, Paul D., Placantonakis, Dimitris G., Polonskaya, Larisa, Potapova, Olga, Pruetz, Barbara, Qi, Liqun, Ramkissoon, Shakti, Resnick, Adam, Richey, Shannon, Riggins, Gregory, Robinson, Karna, Roche, Nancy, Rohrer, Daniel C., Rood, Brian R., Rossell, Larissa, Savage, Sara R., Schadt, Eric E., Shi, Yan, Shi, Zhiao, Shutack, Yvonne, Singh, Shilpi, Skelly, Tara, Sokoll, Lori J., Stawicki, Jakub, Stein, Stephen E., Suh, James, Szopa, Wojciech, Tabor, Dave, Tan, Donghui, Tansil, Darlene, Thangudu, Ratna R., Tognon, Cristina, Traer, Elie, Tsang, Shirley, Tyner, Jeffrey, Um, Ki Sung, Valley, Dana R., Vasaikar, Suhas, Vatanian, Negin, Velvulou, Uma, Vernon, Michael, Wan, Weiqing, Wang, Junmei, Webster, Alex, Wen, Bo, Whiteaker, Jeffrey R., Wilson, George D., Zakhartsev, Yuriy, Zelt, Robert, Zhang, Hui, Zhang, Liwei, Zhang, Zhen, Zhao, Grace, Zhu, Jun, Wang, Liang-Bo, Karpova, Alla, Gritsenko, Marina A., Kyle, Jennifer E., Cao, Song, Li, Yize, Rykunov, Dmitry, Colaprico, Antonio, Rothstein, Joseph H., Hong, Runyu, Stathias, Vasileios, Cornwell, MacIntosh, Petralia, Francesca, Wu, Yige, Reva, Boris, Krug, Karsten, Pugliese, Pietro, Kawaler, Emily, Olsen, Lindsey K., Liang, Wen-Wei, Song, Xiaoyu, Dou, Yongchao, Wendl, Michael C., Caravan, Wagma, Liu, Wenke, Cui Zhou, Daniel, Ji, Jiayi, Tsai, Chia-Feng, Petyuk, Vladislav A., Moon, Jamie, Ma, Weiping, Chu, Rosalie K., Weitz, Karl K., Moore, Ronald J., Monroe, Matthew E., Zhao, Rui, Yang, Xiaolu, Yoo, Seungyeul, Krek, Azra, Demopoulos, Alexis, Zhu, Houxiang, Wyczalkowski, Matthew A., McMichael, Joshua F., Henderson, Brittany L., Lindgren, Caleb M., Boekweg, Hannah, Lu, Shuangjia, Baral, Jessika, Yao, Lijun, Stratton, Kelly G., Bramer, Lisa M., Zink, Erika, Couvillion, Sneha P., Bloodsworth, Kent J., Satpathy, Shankha, Sieh, Weiva, Boca, Simina M., Schürer, Stephan, Chen, Feng, Wiznerowicz, Maciej, Ketchum, Karen A., Boja, Emily S., Kinsinger, Christopher R., Robles, Ana I., Hiltke, Tara, Thiagarajan, Mathangi, Nesvizhskii, Alexey I., Zhang, Bing, Mani, D.R., Ceccarelli, Michele, Chen, Xi S., Cottingham, Sandra L., Li, Qing Kay, Kim, Albert H., Fenyö, David, Ruggles, Kelly V., Rodriguez, Henry, Mesri, Mehdi, Payne, Samuel H., Resnick, Adam C., Wang, Pei, Smith, Richard D., Iavarone, Antonio, Chheda, Milan G., Barnholtz-Sloan, Jill S., Rodland, Karin D., Liu, Tao, and Ding, Li
- Published
- 2021
- Full Text
- View/download PDF
27. Dissecting the Structural Dynamics of the Nuclear Pore Complex
- Author
-
Hakhverdyan, Zhanna, Molloy, Kelly R., Keegan, Sarah, Herricks, Thurston, Lepore, Dante M., Munson, Mary, Subbotin, Roman I., Fenyö, David, Aitchison, John D., Fernandez-Martinez, Javier, Chait, Brian T., and Rout, Michael P.
- Published
- 2021
- Full Text
- View/download PDF
28. Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer
- Author
-
Francis, Alicia, Morgan, Allison M., Waanders, Angela J., Viaene, Angela N., Buccoliero, Anna Maria, Chinnaiyan, Arul M., Leonard, Carina A., Kline, Cassie N., Caporalini, Chiara, Kinsinger, Christopher R., Li, Chunde, Kram, David E., Hanson, Derek, Appert, Elizabeth, Kawaler, Emily A., Raabe, Eric H., Jackson, Eric M., Greenfield, Jeffrey P., Stone, Gabrielle S., Getz, Gad, Grant, Gerald, Teo, Guo Ci, Pollack, Ian F., Cain, Jason E., Foster, Jessica B., Phillips, Joanna J., Palma, July E., Ketchum, Karen A., Ruggles, Kelly V., Blumenberg, Lili, Cornwell, Macintosh, Sarmady, Mahdi, Domagalski, Marcin J., Cieślik, Marcin P., Santi, Mariarita, Li, Marilyn M., Ellis, Matthew J., Wyczalkowski, Matthew A., Connors, Meghan, Scagnet, Mirko, Gupta, Nalin, Edwards, Nathan J., Vitanza, Nicholas A., Vaske, Olena M., Becher, Oren, McGarvey, Peter B., Firestein, Ron, Mueller, Sabine, Winebrake, Samuel G., Dhanasekaran, Saravana Mohan, Cai, Shuang, Partap, Sonia, Patton, Tatiana, Le, Toan, Lorentzen, Travis D., Liu, Wenke, Bocik, William E., Petralia, Francesca, Tignor, Nicole, Reva, Boris, Koptyra, Mateusz, Chowdhury, Shrabanti, Rykunov, Dmitry, Krek, Azra, Ma, Weiping, Zhu, Yuankun, Ji, Jiayi, Calinawan, Anna, Whiteaker, Jeffrey R., Colaprico, Antonio, Stathias, Vasileios, Omelchenko, Tatiana, Song, Xiaoyu, Raman, Pichai, Guo, Yiran, Brown, Miguel A., Ivey, Richard G., Szpyt, John, Guha Thakurta, Sanjukta, Gritsenko, Marina A., Weitz, Karl K., Lopez, Gonzalo, Kalayci, Selim, Gümüş, Zeynep H., Yoo, Seungyeul, da Veiga Leprevost, Felipe, Chang, Hui-Yin, Krug, Karsten, Katsnelson, Lizabeth, Wang, Ying, Kennedy, Jacob J., Voytovich, Uliana J., Zhao, Lei, Gaonkar, Krutika S., Ennis, Brian M., Zhang, Bo, Baubet, Valerie, Tauhid, Lamiya, Lilly, Jena V., Mason, Jennifer L., Farrow, Bailey, Young, Nathan, Leary, Sarah, Moon, Jamie, Petyuk, Vladislav A., Nazarian, Javad, Adappa, Nithin D., Palmer, James N., Lober, Robert M., Rivero-Hinojosa, Samuel, Wang, Liang-Bo, Wang, Joshua M., Broberg, Matilda, Chu, Rosalie K., Moore, Ronald J., Monroe, Matthew E., Zhao, Rui, Smith, Richard D., Zhu, Jun, Robles, Ana I., Mesri, Mehdi, Boja, Emily, Hiltke, Tara, Rodriguez, Henry, Zhang, Bing, Schadt, Eric E., Mani, D.R., Ding, Li, Iavarone, Antonio, Wiznerowicz, Maciej, Schürer, Stephan, Chen, Xi S., Heath, Allison P., Rokita, Jo Lynne, Nesvizhskii, Alexey I., Fenyö, David, Rodland, Karin D., Liu, Tao, Gygi, Steven P., Paulovich, Amanda G., Resnick, Adam C., Storm, Phillip B., Rood, Brian R., and Wang, Pei
- Published
- 2020
- Full Text
- View/download PDF
29. Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy
- Author
-
Avanessian, Shayan C., Cai, Shuang, Chan, Daniel, Chen, Xian, Edwards, Nathan J., Hoofnagle, Andrew N., Kane, M. Harry, Ketchum, Karen A., Kuhn, Eric, Levine, Douglas A., Li, Shunqiang, Liebler, Daniel C., Liu, Tao, Luo, Jingqin, Madhavan, Subha, Maher, Chris, McDermott, Jason E., McGarvey, Peter B., Oberti, Mauricio, Pandey, Akhilesh, Payne, Samuel H., Ransohoff, David F., Rivers, Robert C., Rodland, Karin D., Rudnick, Paul, Sanders, Melinda E., Shaw, Kenna M., Shih, Ie-Ming, Slebos, Robbert J.C., Smith, Richard D., Snyder, Michael, Stein, Stephen E., Tabb, David L., Thangudu, Ratna R., Thomas, Stefani, Wang, Yue, White, Forest M., Whiteaker, Jeffrey R., Whiteley, Gordon A., Zhang, Hui, Zhang, Zhen, Zhao, Yingming, Zhu, Heng, Zimmerman, Lisa J., Krug, Karsten, Jaehnig, Eric J., Satpathy, Shankha, Blumenberg, Lili, Karpova, Alla, Anurag, Meenakshi, Miles, George, Mertins, Philipp, Geffen, Yifat, Tang, Lauren C., Heiman, David I., Cao, Song, Maruvka, Yosef E., Lei, Jonathan T., Huang, Chen, Kothadia, Ramani B., Colaprico, Antonio, Birger, Chet, Wang, Jarey, Dou, Yongchao, Wen, Bo, Shi, Zhiao, Liao, Yuxing, Wiznerowicz, Maciej, Wyczalkowski, Matthew A., Chen, Xi Steven, Kennedy, Jacob J., Paulovich, Amanda G., Thiagarajan, Mathangi, Kinsinger, Christopher R., Hiltke, Tara, Boja, Emily S., Mesri, Mehdi, Robles, Ana I., Rodriguez, Henry, Westbrook, Thomas F., Ding, Li, Getz, Gad, Clauser, Karl R., Fenyö, David, Ruggles, Kelly V., Zhang, Bing, Mani, D.R., Carr, Steven A., Ellis, Matthew J., and Gillette, Michael A.
- Published
- 2020
- Full Text
- View/download PDF
30. Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma
- Author
-
Webster, Alex, Francis, Alicia, Charamut, Alyssa, Paulovich, Amanda G., Perou, Amy M., Godwin, Andrew K., Karnuta, Andrii, Marrero-Oliveras, Annette, Hindenach, Barbara, Pruetz, Barbara, Kubisa, Bartosz, Druker, Brian J., Birger, Chet, Jones, Corbin D., Valley, Dana R., Rohrer, Daniel C., Zhou, Daniel Cui, Chan, Daniel W., Chesla, David, Clark, David J., Rykunov, Dmitry, Tan, Donghui, Ponomareva, Elena V., Duffy, Elizabeth, Burks, Eric J., Schadt, Eric E., Bergstrom, Erik J., Fedorov, Eugene S., Malc, Ewa, Wilson, George D., Chen, Hai-Quan, Krzystek, Halina M., Liu, Hongwei, Culpepper, Houston, Sun, Hua, Zhang, Hui, Day, Jacob, Suh, James, Whiteaker, Jeffrey R., Eschbacher, Jennifer, McGee, John, Ketchum, Karen A., Rodland, Karin D., Robinson, Karna, Hoadley, Katherine A., Suzuki, Kei, Um, Ki Sung, Elburn, Kim, Wang, Liang-Bo, Chen, Lijun, Hannick, Linda, Qi, Liqun, Sokoll, Lori J., Wojtyś, Małgorzata, Domagalski, Marcin J., Gritsenko, Marina A., Beasley, Mary B., Monroe, Matthew E., Ellis, Matthew J., Dyer, Maureen, Burke, Meghan C., Borucki, Melissa, Sun, Meng-Hong, Roehrl, Michael H., Birrer, Michael J., Noble, Michael, Schnaubelt, Michael, Vernon, Michael, Chaikin, Michelle, Krotevich, Mikhail, Khan, Munziba, Selvan, Myvizhi Esai, Roche, Nancy, Edwards, Nathan J., Vatanian, Negin, Potapova, Olga, Grady, Pamela, McGarvey, Peter B., Mieczkowski, Piotr, Hariharan, Pushpa, Madan, Rashna, Thangudu, Ratna R., Smith, Richard D., Welsh, Robert J., Zelt, Robert, Mehra, Rohit, Matteotti, Ronald, Mareedu, Sailaja, Payne, Samuel H., Cottingham, Sandra, Markey, Sanford P., Chugh, Seema, Smith, Shaleigh, Tsang, Shirley, Cai, Shuang, Boca, Simina M., Carter, Sonya, Gabriel, Stacey, De Young, Stephanie, Stein, Stephen E., Shankar, Sunita, Krubit, Tanya, Liu, Tao, Skelly, Tara, Bauer, Thomas, Velvulou, Uma, Ozbek, Umut, Petyuk, Vladislav A., Sovenko, Volodymyr, Bocik, William E., Maggio, William W., Chen, Xi, Shi, Yan, Wu, Yige, Hu, Yingwei, Liao, Yuxing, Zhang, Zhen, Shi, Zhiao, Gillette, Michael A., Satpathy, Shankha, Cao, Song, Dhanasekaran, Saravana M., Vasaikar, Suhas V., Krug, Karsten, Petralia, Francesca, Li, Yize, Liang, Wen-Wei, Reva, Boris, Krek, Azra, Ji, Jiayi, Song, Xiaoyu, Liu, Wenke, Hong, Runyu, Yao, Lijun, Blumenberg, Lili, Savage, Sara R., Wendl, Michael C., Wen, Bo, Li, Kai, Tang, Lauren C., MacMullan, Melanie A., Avanessian, Shayan C., Kane, M. Harry, Newton, Chelsea J., Cornwell, MacIntosh, Kothadia, Ramani B., Ma, Weiping, Yoo, Seungyeul, Mannan, Rahul, Vats, Pankaj, Kumar-Sinha, Chandan, Kawaler, Emily A., Omelchenko, Tatiana, Colaprico, Antonio, Geffen, Yifat, Maruvka, Yosef E., da Veiga Leprevost, Felipe, Wiznerowicz, Maciej, Gümüş, Zeynep H., Veluswamy, Rajwanth R., Hostetter, Galen, Heiman, David I., Wyczalkowski, Matthew A., Hiltke, Tara, Mesri, Mehdi, Kinsinger, Christopher R., Boja, Emily S., Omenn, Gilbert S., Chinnaiyan, Arul M., Rodriguez, Henry, Li, Qing Kay, Jewell, Scott D., Thiagarajan, Mathangi, Getz, Gad, Zhang, Bing, Fenyö, David, Ruggles, Kelly V., Cieslik, Marcin P., Robles, Ana I., Clauser, Karl R., Govindan, Ramaswamy, Wang, Pei, Nesvizhskii, Alexey I., Ding, Li, Mani, D.R., and Carr, Steven A.
- Published
- 2020
- Full Text
- View/download PDF
31. Proteogenomic Characterization of Endometrial Carcinoma
- Author
-
Agarwal, Anupriya, Anurag, Meenakshi, Avtonomov, Dmitry, Birger, Chet, Birrer, Michael J., Boca, Simina M., Bocik, William E., Borate, Uma, Borucki, Melissa, Burke, Meghan C., Cai, Shuang, Calinawan, Anna, Carr, Steven A., Carter, Sonya, Castro, Patricia, Cerda, Sandra, Chaikin, Michelle, Chan, Daniel W., Chan, Doug, Charamut, Alyssa, Chen, Feng, Chen, Jin, Chen, Lijun, Chen, Lin S., Chesla, David, Chheda, Milan G., Chinnaiyan, Arul M., Chowdhury, Shrabanti, Cieslik, Marcin P., Clark, David J., Cottingham, Sandra, Culpepper, Houston, Day, Jacob, De Young, Stephanie, Demir, Emek, Dhanasekaran, Saravana Mohan, Dhir, Rajiv, Domagalski, Marcin J., Dottino, Peter, Druker, Brian, Duffy, Elizabeth, Dyer, Maureen, Edwards, Nathan J., Edwards, Robert, Elburn, Kim, Field, Jayson B., Francis, Alicia, Gabriel, Stacey, Geffen, Yifat, Geiszler, Daniel, Gillette, Michael A., Godwin, Andrew K., Grady, Pamela, Hannick, Linda, Hariharan, Pushpa, Hilsenbeck, Sue, Hindenach, Barbara, Hoadley, Katherine A., Hong, Runyu, Hostetter, Galen, Hsieh, James J., Hu, Yingwei, Ittmann, Michael M., Jaehnig, Eric, Jewell, Scott D., Ji, Jiayi, Jones, Corbin D., Karabon, Renee, Ketchum, Karen A., Khan, Munziba, Kim, Beom-Jun, Krek, Azra, Krubit, Tanya, Kumar-Sinha, Chandan, Leprevost, Felipe D., Lewis, Michael, Li, Qing Kay, Li, Yize, Liu, Hongwei, Lubinski, Jan, Ma, Weiping, Madan, Rashna, Malc, Ewa, Malovannaya, Anna, Mareedu, Sailaja, Markey, Sanford P., Marrero-Oliveras, Annette, Martignetti, John, McDermott, Jason, McGarvey, Peter B., McGee, John, Mieczkowski, Piotr, Modugno, Francesmary, Montgomery, Rebecca, Newton, Chelsea J., Omenn, Gilbert S., Paulovich, Amanda G., Perou, Amy M., Petralia, Francesca, Piehowski, Paul, Polonskaya, Larisa, Qi, Liqun, Richey, Shannon, Robinson, Karna, Roche, Nancy, Rohrer, Daniel C., Schadt, Eric E., Schnaubelt, Michael, Shi, Yan, Skelly, Tara, Sokoll, Lori J., Song, Xiaoyu, Stein, Stephen E., Suh, James, Tan, Donghui, Tansil, Darlene, Teo, Guo Ci, Thangudu, Ratna R., Tognon, Cristina, Traer, Elie, Tyner, Jeffrey, Um, Ki Sung, Valley, Dana R., Vatanian, Negin, Vats, Pankaj, Velvulou, Uma, Vernon, Michael, Wang, Liang-Bo, Wang, Ying, Webster, Alex, Westbrook, Thomas, Wheeler, David, Whiteaker, Jeffrey R., Wilson, George D., Zakhartsev, Yuriy, Zelt, Robert, Zhang, Hui, Zhang, Yuping, Zhang, Zhen, Zhao, Grace, Dou, Yongchao, Kawaler, Emily A., Cui Zhou, Daniel, Gritsenko, Marina A., Huang, Chen, Blumenberg, Lili, Karpova, Alla, Petyuk, Vladislav A., Savage, Sara R., Satpathy, Shankha, Liu, Wenke, Wu, Yige, Tsai, Chia-Feng, Wen, Bo, Li, Zhi, Cao, Song, Moon, Jamie, Shi, Zhiao, Cornwell, MacIntosh, Wyczalkowski, Matthew A., Chu, Rosalie K., Vasaikar, Suhas, Zhou, Hua, Gao, Qingsong, Moore, Ronald J., Li, Kai, Sethuraman, Sunantha, Monroe, Matthew E., Zhao, Rui, Heiman, David, Krug, Karsten, Clauser, Karl, Kothadia, Ramani, Maruvka, Yosef, Pico, Alexander R., Oliphant, Amanda E., Hoskins, Emily L., Pugh, Samuel L., Beecroft, Sean J.I., Adams, David W., Jarman, Jonathan C., Kong, Andy, Chang, Hui-Yin, Reva, Boris, Liao, Yuxing, Rykunov, Dmitry, Colaprico, Antonio, Chen, Xi Steven, Czekański, Andrzej, Jędryka, Marcin, Matkowski, Rafał, Wiznerowicz, Maciej, Hiltke, Tara, Boja, Emily, Kinsinger, Christopher R., Mesri, Mehdi, Robles, Ana I., Rodriguez, Henry, Mutch, David, Fuh, Katherine, Ellis, Matthew J., DeLair, Deborah, Thiagarajan, Mathangi, Mani, D.R., Getz, Gad, Noble, Michael, Nesvizhskii, Alexey I., Wang, Pei, Anderson, Matthew L., Levine, Douglas A., Smith, Richard D., Payne, Samuel H., Ruggles, Kelly V., Rodland, Karin D., Ding, Li, Zhang, Bing, Liu, Tao, and Fenyö, David
- Published
- 2020
- Full Text
- View/download PDF
32. CRL4AMBRA1 is a master regulator of D-type cyclins
- Author
-
Simoneschi, Daniele, Rona, Gergely, Zhou, Nan, Jeong, Yeon-Tae, Jiang, Shaowen, Milletti, Giacomo, Arbini, Arnaldo A., O’Sullivan, Alfie, Wang, Andrew A., Nithikasem, Sorasicha, Keegan, Sarah, Siu, Yik, Cianfanelli, Valentina, Maiani, Emiliano, Nazio, Francesca, Cecconi, Francesco, Boccalatte, Francesco, Fenyö, David, Jones, Drew R., Busino, Luca, and Pagano, Michele
- Published
- 2021
- Full Text
- View/download PDF
33. Cell fitness screens reveal a conflict between LINE-1 retrotransposition and DNA replication
- Author
-
Ardeljan, Daniel, Steranka, Jared P., Liu, Chunhong, Li, Zhi, Taylor, Martin S., Payer, Lindsay M., Gorbounov, Mikhail, Sarnecki, Jacob S., Deshpande, Vikram, Hruban, Ralph H., Boeke, Jef D., Fenyö, David, Wu, Pei-Hsun, Smogorzewska, Agata, Holland, Andrew J., and Burns, Kathleen H.
- Published
- 2020
- Full Text
- View/download PDF
34. BRCA1 and S phase DNA repair pathways restrict LINE-1 retrotransposition in human cells
- Author
-
Mita, Paolo, Sun, Xiaoji, Fenyö, David, Kahler, David J., Li, Donghui, Agmon, Neta, Wudzinska, Aleksandra, Keegan, Sarah, Bader, Joel S., Yun, Chi, and Boeke, Jef D.
- Published
- 2020
- Full Text
- View/download PDF
35. RIP-seq reveals LINE-1 ORF1p association with p-body enriched mRNAs
- Author
-
Briggs, Erica M., McKerrow, Wilson, Mita, Paolo, Boeke, Jef D., Logan, Susan K., and Fenyö, David
- Published
- 2021
- Full Text
- View/download PDF
36. Spatially interacting phosphorylation sites and mutations in cancer
- Author
-
Huang, Kuan-lin, Scott, Adam D., Zhou, Daniel Cui, Wang, Liang-Bo, Weerasinghe, Amila, Elmas, Abdulkadir, Liu, Ruiyang, Wu, Yige, Wendl, Michael C., Wyczalkowski, Matthew A., Baral, Jessika, Sengupta, Sohini, Lai, Chin-Wen, Ruggles, Kelly, Payne, Samuel H., Raphael, Benjamin, Fenyö, David, Chen, Ken, Mills, Gordon, and Ding, Li
- Published
- 2021
- Full Text
- View/download PDF
37. A predictive model for vertebrate bone identification from collagen using proteomic mass spectrometry
- Author
-
Yang, Heyi, Butler, Erin R., Monier, Samantha A., Teubl, Jennifer, Fenyö, David, Ueberheide, Beatrix, and Siegel, Donald
- Published
- 2021
- Full Text
- View/download PDF
38. Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma
- Author
-
Hashimi, Abdul Samad, Pico, Alexander R., Karpova, Alla, Charamut, Alyssa, Paulovich, Amanda G., Perou, Amy M., Malovannaya, Anna, Marrero-Oliveras, Annette, Agarwal, Anupriya, Hindenach, Barbara, Pruetz, Barbara, Kim, Beom-Jun, Druker, Brian J., Newton, Chelsea J., Birger, Chet, Jones, Corbin D., Tognon, Cristina, Mani, D.R., Valley, Dana R., Rohrer, Daniel C., Zhou, Daniel C., Tansil, Darlene, Chesla, David, Heiman, David, Wheeler, David, Tan, Donghui, Chan, Doug, Demir, Emek, Malc, Ewa, Modugno, Francesmary, Getz, Gaddy, Hostetter, Galen, Wilson, George D., Hart, Gerald W., Zhu, Heng, Liu, Hongwei, Culpepper, Houston, Sun, Hua, Zhou, Hua, Day, Jacob, Suh, James, Huang, Jasmine, McDermott, Jason, Whiteaker, Jeffrey R., Tyner, Jeffrey W., Eschbacher, Jennifer, Chen, Jin, McGee, John, Zhu, Jun, Ketchum, Karen A., Rodland, Karin D., Clauser, Karl, Robinson, Karna, Krug, Karsten, Hoadley, Katherine A., Um, Ki Sung, Elburn, Kim, Holloway, Kimberly, Wang, Liang-Bo, Blumenberg, Lili, Hannick, Linda, Qi, Liqun, Sokoll, Lori J., Cornwell, MacIntosh, Loriaux, Marc, Domagalski, Marcin J., Gritsenko, Marina A., Anderson, Matthew, Monroe, Matthew E., Ellis, Matthew J., Dyer, Maureen, Anurag, Meenakshi, Burke, Meghan C., Borucki, Melissa, Gillette, Michael A., Birrer, Michael J., Lewis, Michael, Ittmann, Michael M., Smith, Michael, Vernon, Michael, Chaikin, Michelle, Chheda, Milan G., Khan, Munziba, Roche, Nancy, Edwards, Nathan J., Vatanian, Negin, Tignor, Nicole, Beckmann, Noam, Grady, Pamela, Castro, Patricia, Piehowski, Paul, McGarvey, Peter B., Mieczkowski, Piotr, Hariharan, Pushpa, Gao, Qingsong, Dhir, Rajiv, Kothadia, Ramani Bhupendra, Thangudu, Ratna R., Montgomery, Rebecca, Jayasinghe, Reyka G., Smith, Richard D., Edwards, Robert, Zelt, Robert, Bremner, Ross, Liu, Ruiyang, Hong, Runyu, Mareedu, Sailaja, Payne, Samuel H., Cottingham, Sandra, Markey, Sanford P., Jewell, Scott D., Patel, Shalin, Satpathy, Shankha, Richey, Shannon, Davies, Sherri R., Cai, Shuang, Boca, Simina M., Patil, Snehal, Sengupta, Sohini, Carter, Sonya, Gabriel, Stacey, Thomas, Stefani N., De Young, Stephanie, Stein, Stephen E., Carr, Steven A., Foltz, Steven M., Hilsenbeck, Sue, Krubit, Tanya, Liu, Tao, Skelly, Tara, Westbrook, Thomas, Borate, Uma, Velvulou, Uma, Petyuk, Vladislav A., Bocik, William E., Chen, Xi, Shi, Yan, Geffen, Yifat, Lu, Yihao, Wang, Ying, Maruvka, Yosef, Li, Zhi, Shi, Zhiao, Tu, Zhidong, Clark, David J., Dhanasekaran, Saravana M., Petralia, Francesca, Pan, Jianbo, Song, Xiaoyu, Hu, Yingwei, da Veiga Leprevost, Felipe, Reva, Boris, Lih, Tung-Shing M., Chang, Hui-Yin, Ma, Weiping, Huang, Chen, Ricketts, Christopher J., Chen, Lijun, Krek, Azra, Li, Yize, Rykunov, Dmitry, Li, Qing Kay, Chen, Lin S., Ozbek, Umut, Vasaikar, Suhas, Wu, Yige, Yoo, Seungyeul, Chowdhury, Shrabanti, Wyczalkowski, Matthew A., Ji, Jiayi, Schnaubelt, Michael, Kong, Andy, Sethuraman, Sunantha, Avtonomov, Dmitry M., Ao, Minghui, Colaprico, Antonio, Cao, Song, Cho, Kyung-Cho, Kalayci, Selim, Ma, Shiyong, Liu, Wenke, Ruggles, Kelly, Calinawan, Anna, Gümüş, Zeynep H., Geiszler, Daniel, Kawaler, Emily, Teo, Guo Ci, Wen, Bo, Zhang, Yuping, Keegan, Sarah, Li, Kai, Chen, Feng, Edwards, Nathan, Pierorazio, Phillip M., Chen, Xi Steven, Pavlovich, Christian P., Hakimi, A. Ari, Brominski, Gabriel, Hsieh, James J., Antczak, Andrzej, Omelchenko, Tatiana, Lubinski, Jan, Wiznerowicz, Maciej, Linehan, W. Marston, Kinsinger, Christopher R., Thiagarajan, Mathangi, Boja, Emily S., Mesri, Mehdi, Hiltke, Tara, Robles, Ana I., Rodriguez, Henry, Qian, Jiang, Fenyö, David, Zhang, Bing, Ding, Li, Schadt, Eric, Chinnaiyan, Arul M., Zhang, Zhen, Omenn, Gilbert S., Cieslik, Marcin, Chan, Daniel W., Nesvizhskii, Alexey I., Wang, Pei, and Zhang, Hui
- Published
- 2019
- Full Text
- View/download PDF
39. Integration and Analysis of CPTAC Proteomics Data in the Context of Cancer Genomics in the cBioPortal
- Author
-
Wu, Pamela, Heins, Zachary J., Muller, James T., Katsnelson, Lizabeth, de Bruijn, Ino, Abeshouse, Adam A., Schultz, Nikolaus, Fenyö, David, and Gao, Jianjiong
- Published
- 2019
- Full Text
- View/download PDF
40. Extracting Pathway-level Signatures from Proteogenomic Data in Breast Cancer Using Independent Component Analysis
- Author
-
Liu, Wenke, Payne, Samuel H., Ma, Sisi, and Fenyö, David
- Published
- 2019
- Full Text
- View/download PDF
41. Regulated Phosphosignaling Associated with Breast Cancer Subtypes and Druggability*[S]
- Author
-
Huang, Kuan-lin, Wu, Yige, Primeau, Tina, Wang, Yi-Ting, Gao, Yuqian, McMichael, Joshua F., Scott, Adam D., Cao, Song, Wendl, Michael C., Johnson, Kimberly J., Ruggles, Kelly, Held, Jason, Payne, Samuel H., Davies, Sherri, Dar, Arvin, Kinsinger, Christopher R., Mesri, Mehdi, Rodriguez, Henry, Ellis, Matthew J., Townsend, R. Reid, Chen, Feng, Fenyö, David, Li, Shunqiang, Liu, Tao, Carr, Steven A., and Ding, Li
- Published
- 2019
- Full Text
- View/download PDF
42. Quantitative Mass Spectrometry to Interrogate Proteomic Heterogeneity in Metastatic Lung Adenocarcinoma and Validate a Novel Somatic Mutation CDK12-G879V
- Author
-
Zhang, Xu, Nguyen, Khoa Dang, Rudnick, Paul A., Roper, Nitin, Kawaler, Emily, Maity, Tapan K., Awasthi, Shivangi, Gao, Shaojian, Biswas, Romi, Venugopalan, Abhilash, Cultraro, Constance M., Fenyö, David, and Guha, Udayan
- Published
- 2019
- Full Text
- View/download PDF
43. Transcription factor profiling reveals molecular choreography and key regulators of human retrotransposon expression
- Author
-
Sun, Xiaoji, Wang, Xuya, Tang, Zuojian, Grivainis, Mark, Kahler, David, Yun, Chi, Mita, Paolo, Fenyö, David, and Boeke, Jef D.
- Published
- 2018
44. Systematic Analysis of Splice-Site-Creating Mutations in Cancer
- Author
-
Caesar-Johnson, Samantha J., Demchok, John A., Felau, Ina, Kasapi, Melpomeni, Ferguson, Martin L., Hutter, Carolyn M., Sofia, Heidi J., Tarnuzzer, Roy, Wang, Zhining, Yang, Liming, Zenklusen, Jean C., Zhang, Jiashan (Julia), Chudamani, Sudha, Liu, Jia, Lolla, Laxmi, Naresh, Rashi, Pihl, Todd, Sun, Qiang, Wan, Yunhu, Wu, Ye, Cho, Juok, DeFreitas, Timothy, Frazer, Scott, Gehlenborg, Nils, Getz, Gad, Heiman, David I., Kim, Jaegil, Lawrence, Michael S., Lin, Pei, Meier, Sam, Noble, Michael S., Saksena, Gordon, Voet, Doug, Zhang, Hailei, Bernard, Brady, Chambwe, Nyasha, Dhankani, Varsha, Knijnenburg, Theo, Kramer, Roger, Leinonen, Kalle, Liu, Yuexin, Miller, Michael, Reynolds, Sheila, Shmulevich, Ilya, Thorsson, Vesteinn, Zhang, Wei, Akbani, Rehan, Broom, Bradley M., Hegde, Apurva M., Ju, Zhenlin, Kanchi, Rupa S., Korkut, Anil, Li, Jun, Liang, Han, Ling, Shiyun, Liu, Wenbin, Lu, Yiling, Mills, Gordon B., Ng, Kwok-Shing, Rao, Arvind, Ryan, Michael, Wang, Jing, Weinstein, John N., Zhang, Jiexin, Abeshouse, Adam, Armenia, Joshua, Chakravarty, Debyani, Chatila, Walid K., de Bruijn, Ino, Gao, Jianjiong, Gross, Benjamin E., Heins, Zachary J., Kundra, Ritika, La, Konnor, Ladanyi, Marc, Luna, Augustin, Nissan, Moriah G., Ochoa, Angelica, Phillips, Sarah M., Reznik, Ed, Sanchez-Vega, Francisco, Sander, Chris, Schultz, Nikolaus, Sheridan, Robert, Sumer, S. Onur, Sun, Yichao, Taylor, Barry S., Wang, Jioajiao, Zhang, Hongxin, Anur, Pavana, Peto, Myron, Spellman, Paul, Benz, Christopher, Stuart, Joshua M., Wong, Christopher K., Yau, Christina, Hayes, D. Neil, Parker, Joel S., Wilkerson, Matthew D., Ally, Adrian, Balasundaram, Miruna, Bowlby, Reanne, Brooks, Denise, Carlsen, Rebecca, Chuah, Eric, Dhalla, Noreen, Holt, Robert, Jones, Steven J.M., Kasaian, Katayoon, Lee, Darlene, Ma, Yussanne, Marra, Marco A., Mayo, Michael, Moore, Richard A., Mungall, Andrew J., Mungall, Karen, Robertson, A. Gordon, Sadeghi, Sara, Schein, Jacqueline E., Sipahimalani, Payal, Tam, Angela, Thiessen, Nina, Tse, Kane, Wong, Tina, Berger, Ashton C., Beroukhim, Rameen, Cherniack, Andrew D., Cibulskis, Carrie, Gabriel, Stacey B., Gao, Galen F., Ha, Gavin, Meyerson, Matthew, Schumacher, Steven E., Shih, Juliann, Kucherlapati, Melanie H., Kucherlapati, Raju S., Baylin, Stephen, Cope, Leslie, Danilova, Ludmila, Bootwalla, Moiz S., Lai, Phillip H., Maglinte, Dennis T., Van Den Berg, David J., Weisenberger, Daniel J., Auman, J. Todd, Balu, Saianand, Bodenheimer, Tom, Fan, Cheng, Hoadley, Katherine A., Hoyle, Alan P., Jefferys, Stuart R., Jones, Corbin D., Meng, Shaowu, Mieczkowski, Piotr A., Mose, Lisle E., Perou, Amy H., Perou, Charles M., Roach, Jeffrey, Shi, Yan, Simons, Janae V., Skelly, Tara, Soloway, Matthew G., Tan, Donghui, Veluvolu, Umadevi, Fan, Huihui, Hinoue, Toshinori, Laird, Peter W., Shen, Hui, Zhou, Wanding, Bellair, Michelle, Chang, Kyle, Covington, Kyle, Creighton, Chad J., Dinh, Huyen, Doddapaneni, HarshaVardhan, Donehower, Lawrence A., Drummond, Jennifer, Gibbs, Richard A., Glenn, Robert, Hale, Walker, Han, Yi, Hu, Jianhong, Korchina, Viktoriya, Lee, Sandra, Lewis, Lora, Li, Wei, Liu, Xiuping, Morgan, Margaret, Morton, Donna, Muzny, Donna, Santibanez, Jireh, Sheth, Margi, Shinbrot, Eve, Wang, Linghua, Wang, Min, Wheeler, David A., Xi, Liu, Zhao, Fengmei, Hess, Julian, Appelbaum, Elizabeth L., Bailey, Matthew, Cordes, Matthew G., Ding, Li, Fronick, Catrina C., Fulton, Lucinda A., Fulton, Robert S., Kandoth, Cyriac, Mardis, Elaine R., McLellan, Michael D., Miller, Christopher A., Schmidt, Heather K., Wilson, Richard K., Crain, Daniel, Curley, Erin, Gardner, Johanna, Lau, Kevin, Mallery, David, Morris, Scott, Paulauskis, Joseph, Penny, Robert, Shelton, Candace, Shelton, Troy, Sherman, Mark, Thompson, Eric, Yena, Peggy, Bowen, Jay, Gastier-Foster, Julie M., Gerken, Mark, Leraas, Kristen M., Lichtenberg, Tara M., Ramirez, Nilsa C., Wise, Lisa, Zmuda, Erik, Corcoran, Niall, Costello, Tony, Hovens, Christopher, Carvalho, Andre L., de Carvalho, Ana C., Fregnani, José H., Longatto-Filho, Adhemar, Reis, Rui M., Scapulatempo-Neto, Cristovam, Silveira, Henrique C.S., Vidal, Daniel O., Burnette, Andrew, Eschbacher, Jennifer, Hermes, Beth, Noss, Ardene, Singh, Rosy, Anderson, Matthew L., Castro, Patricia D., Ittmann, Michael, Huntsman, David, Kohl, Bernard, Le, Xuan, Thorp, Richard, Andry, Chris, Duffy, Elizabeth R., Lyadov, Vladimir, Paklina, Oxana, Setdikova, Galiya, Shabunin, Alexey, Tavobilov, Mikhail, McPherson, Christopher, Warnick, Ronald, Berkowitz, Ross, Cramer, Daniel, Feltmate, Colleen, Horowitz, Neil, Kibel, Adam, Muto, Michael, Raut, Chandrajit P., Malykh, Andrei, Barnholtz-Sloan, Jill S., Barrett, Wendi, Devine, Karen, Fulop, Jordonna, Ostrom, Quinn T., Shimmel, Kristen, Wolinsky, Yingli, Sloan, Andrew E., De Rose, Agostino, Giuliante, Felice, Goodman, Marc, Karlan, Beth Y., Hagedorn, Curt H., Eckman, John, Harr, Jodi, Myers, Jerome, Tucker, Kelinda, Zach, Leigh Anne, Deyarmin, Brenda, Hu, Hai, Kvecher, Leonid, Larson, Caroline, Mural, Richard J., Somiari, Stella, Vicha, Ales, Zelinka, Tomas, Bennett, Joseph, Iacocca, Mary, Rabeno, Brenda, Swanson, Patricia, Latour, Mathieu, Lacombe, Louis, Têtu, Bernard, Bergeron, Alain, McGraw, Mary, Staugaitis, Susan M., Chabot, John, Hibshoosh, Hanina, Sepulveda, Antonia, Su, Tao, Wang, Timothy, Potapova, Olga, Voronina, Olga, Desjardins, Laurence, Mariani, Odette, Roman-Roman, Sergio, Sastre, Xavier, Stern, Marc-Henri, Cheng, Feixiong, Signoretti, Sabina, Berchuck, Andrew, Bigner, Darell, Lipp, Eric, Marks, Jeffrey, McCall, Shannon, McLendon, Roger, Secord, Angeles, Sharp, Alexis, Behera, Madhusmita, Brat, Daniel J., Chen, Amy, Delman, Keith, Force, Seth, Khuri, Fadlo, Magliocca, Kelly, Maithel, Shishir, Olson, Jeffrey J., Owonikoko, Taofeek, Pickens, Alan, Ramalingam, Suresh, Shin, Dong M., Sica, Gabriel, Van Meir, Erwin G., Zhang, Hongzheng, Eijckenboom, Wil, Gillis, Ad, Korpershoek, Esther, Looijenga, Leendert, Oosterhuis, Wolter, Stoop, Hans, van Kessel, Kim E., Zwarthoff, Ellen C., Calatozzolo, Chiara, Cuppini, Lucia, Cuzzubbo, Stefania, DiMeco, Francesco, Finocchiaro, Gaetano, Mattei, Luca, Perin, Alessandro, Pollo, Bianca, Chen, Chu, Houck, John, Lohavanichbutr, Pawadee, Hartmann, Arndt, Stoehr, Christine, Stoehr, Robert, Taubert, Helge, Wach, Sven, Wullich, Bernd, Kycler, Witold, Murawa, Dawid, Wiznerowicz, Maciej, Chung, Ki, Edenfield, W. Jeffrey, Martin, Julie, Baudin, Eric, Bubley, Glenn, Bueno, Raphael, De Rienzo, Assunta, Richards, William G., Kalkanis, Steven, Mikkelsen, Tom, Noushmehr, Houtan, Scarpace, Lisa, Girard, Nicolas, Aymerich, Marta, Campo, Elias, Giné, Eva, Guillermo, Armando López, Van Bang, Nguyen, Hanh, Phan Thi, Phu, Bui Duc, Tang, Yufang, Colman, Howard, Evason, Kimberley, Dottino, Peter R., Martignetti, John A., Gabra, Hani, Juhl, Hartmut, Akeredolu, Teniola, Stepa, Serghei, Hoon, Dave, Ahn, Keunsoo, Kang, Koo Jeong, Beuschlein, Felix, Breggia, Anne, Birrer, Michael, Bell, Debra, Borad, Mitesh, Bryce, Alan H., Castle, Erik, Chandan, Vishal, Cheville, John, Copland, John A., Farnell, Michael, Flotte, Thomas, Giama, Nasra, Ho, Thai, Kendrick, Michael, Kocher, Jean-Pierre, Kopp, Karla, Moser, Catherine, Nagorney, David, O’Brien, Daniel, O’Neill, Brian Patrick, Patel, Tushar, Petersen, Gloria, Que, Florencia, Rivera, Michael, Roberts, Lewis, Smallridge, Robert, Smyrk, Thomas, Stanton, Melissa, Thompson, R. Houston, Torbenson, Michael, Yang, Ju Dong, Zhang, Lizhi, Brimo, Fadi, Ajani, Jaffer A., Gonzalez, Ana Maria Angulo, Behrens, Carmen, Bondaruk, Jolanta, Broaddus, Russell, Czerniak, Bogdan, Esmaeli, Bita, Fujimoto, Junya, Gershenwald, Jeffrey, Guo, Charles, Lazar, Alexander J., Logothetis, Christopher, Meric-Bernstam, Funda, Moran, Cesar, Ramondetta, Lois, Rice, David, Sood, Anil, Tamboli, Pheroze, Thompson, Timothy, Troncoso, Patricia, Tsao, Anne, Wistuba, Ignacio, Carter, Candace, Haydu, Lauren, Hersey, Peter, Jakrot, Valerie, Kakavand, Hojabr, Kefford, Richard, Lee, Kenneth, Long, Georgina, Mann, Graham, Quinn, Michael, Saw, Robyn, Scolyer, Richard, Shannon, Kerwin, Spillane, Andrew, Stretch, Jonathan, Synott, Maria, Thompson, John, Wilmott, James, Al-Ahmadie, Hikmat, Chan, Timothy A., Ghossein, Ronald, Gopalan, Anuradha, Levine, Douglas A., Reuter, Victor, Singer, Samuel, Singh, Bhuvanesh, Tien, Nguyen Viet, Broudy, Thomas, Mirsaidi, Cyrus, Nair, Praveen, Drwiega, Paul, Miller, Judy, Smith, Jennifer, Zaren, Howard, Park, Joong-Won, Hung, Nguyen Phi, Kebebew, Electron, Linehan, W. Marston, Metwalli, Adam R., Pacak, Karel, Pinto, Peter A., Schiffman, Mark, Schmidt, Laura S., Vocke, Cathy D., Wentzensen, Nicolas, Worrell, Robert, Yang, Hannah, Moncrieff, Marc, Goparaju, Chandra, Melamed, Jonathan, Pass, Harvey, Botnariuc, Natalia, Caraman, Irina, Cernat, Mircea, Chemencedji, Inga, Clipca, Adrian, Doruc, Serghei, Gorincioi, Ghenadie, Mura, Sergiu, Pirtac, Maria, Stancul, Irina, Tcaciuc, Diana, Albert, Monique, Alexopoulou, Iakovina, Arnaout, Angel, Bartlett, John, Engel, Jay, Gilbert, Sebastien, Parfitt, Jeremy, Sekhon, Harman, Thomas, George, Rassl, Doris M., Rintoul, Robert C., Bifulco, Carlo, Tamakawa, Raina, Urba, Walter, Hayward, Nicholas, Timmers, Henri, Antenucci, Anna, Facciolo, Francesco, Grazi, Gianluca, Marino, Mirella, Merola, Roberta, de Krijger, Ronald, Gimenez-Roqueplo, Anne-Paule, Piché, Alain, Chevalier, Simone, McKercher, Ginette, Birsoy, Kivanc, Barnett, Gene, Brewer, Cathy, Farver, Carol, Naska, Theresa, Pennell, Nathan A., Raymond, Daniel, Schilero, Cathy, Smolenski, Kathy, Williams, Felicia, Morrison, Carl, Borgia, Jeffrey A., Liptay, Michael J., Pool, Mark, Seder, Christopher W., Junker, Kerstin, Omberg, Larsson, Dinkin, Mikhail, Manikhas, George, Alvaro, Domenico, Bragazzi, Maria Consiglia, Cardinale, Vincenzo, Carpino, Guido, Gaudio, Eugenio, Chesla, David, Cottingham, Sandra, Dubina, Michael, Moiseenko, Fedor, Dhanasekaran, Renumathy, Becker, Karl-Friedrich, Janssen, Klaus-Peter, Slotta-Huspenina, Julia, Abdel-Rahman, Mohamed H., Aziz, Dina, Bell, Sue, Cebulla, Colleen M., Davis, Amy, Duell, Rebecca, Elder, J. Bradley, Hilty, Joe, Kumar, Bahavna, Lang, James, Lehman, Norman L., Mandt, Randy, Nguyen, Phuong, Pilarski, Robert, Rai, Karan, Schoenfield, Lynn, Senecal, Kelly, Wakely, Paul, Hansen, Paul, Lechan, Ronald, Powers, James, Tischler, Arthur, Grizzle, William E., Sexton, Katherine C., Kastl, Alison, Henderson, Joel, Porten, Sima, Waldmann, Jens, Fassnacht, Martin, Asa, Sylvia L., Schadendorf, Dirk, Couce, Marta, Graefen, Markus, Huland, Hartwig, Sauter, Guido, Schlomm, Thorsten, Simon, Ronald, Tennstedt, Pierre, Olabode, Oluwole, Nelson, Mark, Bathe, Oliver, Carroll, Peter R., Chan, June M., Disaia, Philip, Glenn, Pat, Kelley, Robin K., Landen, Charles N., Phillips, Joanna, Prados, Michael, Simko, Jeffry, Smith-McCune, Karen, VandenBerg, Scott, Roggin, Kevin, Fehrenbach, Ashley, Kendler, Ady, Sifri, Suzanne, Steele, Ruth, Jimeno, Antonio, Carey, Francis, Forgie, Ian, Mannelli, Massimo, Carney, Michael, Hernandez, Brenda, Campos, Benito, Herold-Mende, Christel, Jungk, Christin, Unterberg, Andreas, von Deimling, Andreas, Bossler, Aaron, Galbraith, Joseph, Jacobus, Laura, Knudson, Michael, Knutson, Tina, Ma, Deqin, Milhem, Mohammed, Sigmund, Rita, Godwin, Andrew K., Madan, Rashna, Rosenthal, Howard G., Adebamowo, Clement, Adebamowo, Sally N., Boussioutas, Alex, Beer, David, Giordano, Thomas, Mes-Masson, Anne-Marie, Saad, Fred, Bocklage, Therese, Landrum, Lisa, Mannel, Robert, Moore, Kathleen, Moxley, Katherine, Postier, Russel, Walker, Joan, Zuna, Rosemary, Feldman, Michael, Valdivieso, Federico, Dhir, Rajiv, Luketich, James, Pinero, Edna M. Mora, Quintero-Aguilo, Mario, Carlotti, Carlos Gilberto, Jr., Dos Santos, Jose Sebastião, Kemp, Rafael, Sankarankuty, Ajith, Tirapelli, Daniela, Catto, James, Agnew, Kathy, Swisher, Elizabeth, Creaney, Jenette, Robinson, Bruce, Shelley, Carl Simon, Godwin, Eryn M., Kendall, Sara, Shipman, Cassaundra, Bradford, Carol, Carey, Thomas, Haddad, Andrea, Moyer, Jeffey, Peterson, Lisa, Prince, Mark, Rozek, Laura, Wolf, Gregory, Bowman, Rayleen, Fong, Kwun M., Yang, Ian, Korst, Robert, Rathmell, W. Kimryn, Fantacone-Campbell, J. Leigh, Hooke, Jeffrey A., Kovatich, Albert J., Shriver, Craig D., DiPersio, John, Drake, Bettina, Govindan, Ramaswamy, Heath, Sharon, Ley, Timothy, Van Tine, Brian, Westervelt, Peter, Rubin, Mark A., Lee, Jung Il, Aredes, Natália D., Mariamidze, Armaz, Jayasinghe, Reyka G., Cao, Song, Gao, Qingsong, Wendl, Michael C., Vo, Nam Sy, Reynolds, Sheila M., Zhao, Yanyan, Climente-González, Héctor, Chai, Shengjie, Wang, Fang, Varghese, Rajees, Huang, Mo, Liang, Wen-Wei, Wyczalkowski, Matthew A., Sengupta, Sohini, Li, Zhi, Payne, Samuel H., Fenyö, David, Miner, Jeffrey H., Walter, Matthew J., Vincent, Benjamin, Eyras, Eduardo, Chen, Ken, and Chen, Feng
- Published
- 2018
- Full Text
- View/download PDF
45. Synthesis, debugging, and effects of synthetic chromosome consolidation : synVI and beyond
- Author
-
Mitchell, Leslie A., Wang, Ann, Stracquadanio, Giovanni, Kuang, Zheng, Wang, Xuya, Yang, Kun, Richardson, Sarah, Martin, J. Andrew, Zhao, Yu, Walker, Roy, Luo, Yisha, Dai, Hongjiu, Dong, Kang, Tang, Zuojian, Yang, Yanling, Cai, Yizhi, Heguy, Adriana, Ueberheide, Beatrix, Fenyö, David, Dai, Junbiao, Bader, Joel S., and Boeke, Jef D.
- Published
- 2017
46. A Systems Biology Approach Identifies FUT8 as a Driver of Melanoma Metastasis
- Author
-
Agrawal, Praveen, Fontanals-Cirera, Barbara, Sokolova, Elena, Jacob, Samson, Vaiana, Christopher A., Argibay, Diana, Davalos, Veronica, McDermott, Meagan, Nayak, Shruti, Darvishian, Farbod, Castillo, Mireia, Ueberheide, Beatrix, Osman, Iman, Fenyö, David, Mahal, Lara K., and Hernando, Eva
- Published
- 2017
- Full Text
- View/download PDF
47. Methods, Tools and Current Perspectives in Proteogenomics
- Author
-
Ruggles, Kelly V., Krug, Karsten, Wang, Xiaojing, Clauser, Karl R., Wang, Jing, Payne, Samuel H., Fenyö, David, Zhang, Bing, and Mani, D.R.
- Published
- 2017
- Full Text
- View/download PDF
48. Intraarticular injection of liposomal adenosine reduces cartilage damage in established murine and rat models of osteoarthritis
- Author
-
Corciulo, Carmen, Castro, Cristina M., Coughlin, Thomas, Jacob, Samson, Li, Zhu, Fenyö, David, Rifkin, Daniel B., Kennedy, Oran D., and Cronstein, Bruce Neil
- Published
- 2020
- Full Text
- View/download PDF
49. Transcription shapes DNA replication initiation and termination in human cells
- Author
-
Chen, Yu-Hung, Keegan, Sarah, Kahli, Malik, Tonzi, Peter, Fenyö, David, Huang, Tony T., and Smith, Duncan J.
- Published
- 2019
- Full Text
- View/download PDF
50. Classification and mutation prediction from non–small cell lung cancer histopathology images using deep learning
- Author
-
Coudray, Nicolas, Ocampo, Paolo Santiago, Sakellaropoulos, Theodore, Narula, Navneet, Snuderl, Matija, Fenyö, David, Moreira, Andre L., Razavian, Narges, and Tsirigos, Aristotelis
- Published
- 2018
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.