12 results on '"Fontes, J D"'
Search Results
2. Simple Risk Model Predicts Incidence of Atrial Fibrillation in a Racially and Geographically Diverse Population: the CHARGE-AF Consortium
- Author
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Couper, D., Ellinor, P. T., Alonso, A., Burke, G. L., Gudnason, V., Magnani, J. W., Heckbert, S. R., Schnabel, R. B., Larson, M. G., Harris, T. B., Soliman, E. Z., Witteman, J. C., Stepas, K. A., Moser, C. B., Sinner, M. F., Launer, L. J., Pencina, M. J., Sotoodehnia, N., Kaab, S., Levy, D., Stricker, B. H. C., Hofman, A., Fontes, J. D., Krijthe, B. P., Lubitz, S. A., Gottdiener, J. S., Agarwal, S. K., Kronmal, R. A., Chamberlain, A. M., McManus, D. D., Aspelund, T., and Janssens, A. C. J. W.
- Abstract
BackgroundTools for the prediction of atrial fibrillation (AF) may identify high‐risk individuals more likely to benefit from preventive interventions and serve as a benchmark to test novel putative risk factors.Methods and ResultsIndividual‐level data from 3 large cohorts in the United States (Atherosclerosis Risk in Communities [ARIC] study, the Cardiovascular Health Study [CHS], and the Framingham Heart Study [FHS]), including 18 556 men and women aged 46 to 94 years (19% African Americans, 81% whites) were pooled to derive predictive models for AF using clinical variables. Validation of the derived models was performed in 7672 participants from the Age, Gene and Environment—Reykjavik study (AGES) and the Rotterdam Study (RS). The analysis included 1186 incident AF cases in the derivation cohorts and 585 in the validation cohorts. A simple 5‐year predictive model including the variables age, race, height, weight, systolic and diastolic blood pressure, current smoking, use of antihypertensive medication, diabetes, and history of myocardial infarction and heart failure had good discrimination (C‐statistic, 0.765; 95% CI, 0.748 to 0.781). Addition of variables from the electrocardiogram did not improve the overall model discrimination (C‐statistic, 0.767; 95% CI, 0.750 to 0.783; categorical net reclassification improvement, −0.0032; 95% CI, −0.0178 to 0.0113). In the validation cohorts, discrimination was acceptable (AGES C‐statistic, 0.664; 95% CI, 0.632 to 0.697 and RS C‐statistic, 0.705; 95% CI, 0.664 to 0.747) and calibration was adequate.ConclusionA risk model including variables readily available in primary care settings adequately predicted AF in diverse populations from the United States and Europe.
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- 2013
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3. The class II transactivator CIITA is a transcriptional integrator.
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Fontes JD, Kanazawa S, Nekrep N, and Peterlin BM
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- Animals, DNA-Binding Proteins metabolism, Genes, Switch physiology, Humans, Promoter Regions, Genetic genetics, Response Elements genetics, Transcription, Genetic genetics, Transcription, Genetic physiology, Gene Expression Regulation, Genes, MHC Class II genetics, Nuclear Proteins, Trans-Activators metabolism
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- 1999
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4. Interactions between the class II transactivator and CREB binding protein increase transcription of major histocompatibility complex class II genes.
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Fontes JD, Kanazawa S, Jean D, and Peterlin BM
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- Animals, B-Lymphocytes, Binding Sites, COS Cells, CREB-Binding Protein, Cell Line, Transformed, Dexamethasone pharmacology, Gene Expression Regulation drug effects, Glucocorticoids pharmacology, Humans, Promoter Regions, Genetic, Trans-Activators genetics, Genes, MHC Class II, Nuclear Proteins metabolism, Trans-Activators metabolism, Transcription, Genetic
- Abstract
Class II major histocompatibility (class II) genes are regulated in a B-cell-specific and gamma interferon-inducible fashion. The master switch for the expression of these genes is the class II transactivator (CIITA). In this report, we demonstrate that one of the functions of CIITA is to recruit the CREB binding protein (CBP) to class II promoters. Not only functional but also specific binding interactions between CIITA and CBP were demonstrated. Moreover, a dominant negative form of CBP decreased the activity of class II promoters and levels of class II determinants on the surface of cells. Finally, the inhibition of class II gene expression by the glucocorticoid hormone could be attributed to the squelching of CBP by the glucocorticoid receptor. We conclude that CBP, a histone acetyltransferase, plays an important role in the transcription of class II genes.
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- 1999
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5. Assembly of functional regulatory complexes on MHC class II promoters in vivo.
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Fontes JD, Jabrane-Ferrat N, and Peterlin BM
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- Animals, B-Lymphocytes, COS Cells, Cell Line, DNA metabolism, DNA-Binding Proteins genetics, Herpes Simplex Virus Protein Vmw65 genetics, Models, Genetic, Recombinant Fusion Proteins, DNA-Binding Proteins metabolism, Gene Expression Regulation genetics, Genes, MHC Class II genetics, Promoter Regions, Genetic genetics
- Abstract
Regulatory factors that bind to the X box 1 to 5 (RFX1 to RFX5) and p36 interact with the X box in major histocompatibility class II promoters. RFX1 and RFX5 bind to DNA as a homodimer (RFX1) and heterodimer with p36 (RFX5:p36, the RFX complex), respectively. In this study, we characterized the binding of RFX1 and the RFX complex to the X box in vivo, and evaluated contributions of other proteins that bind to flanking conserved upstream sequences (CUS: S, X, X2, and Y boxes) to these protein-DNA interactions. For this purpose, an intracellular DNA-binding assay was developed. Hybrid protein effectors between RFX1 and RFX5 and the activation domain of VP16 from the herpes simplex virus were co-expressed with plasmid targets, which contained the isolated X box, X box and selected flanking CUS, or the entire DRA promoter. Whereas RFX1 bound better to isolated X boxes, the Y box selected for the binding of the RFX complex and against the binding of RFX1 to the X box. With proper spacing, S and X boxes stabilized the binding of both RFX1 and the RFX complex. The X2 box did not contribute significantly to the binding of either RFX1 or the RFX complex to the X box. Thus, complex protein-protein and protein-DNA interactions dictate the binding of functionally relevant proteins to conserved upstream sequences which regulate class II transcription.
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- 1997
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6. The class II trans-activator CIITA interacts with the TBP-associated factor TAFII32.
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Fontes JD, Jiang B, and Peterlin BM
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- Amino Acid Sequence, Animals, B-Lymphocytes immunology, B-Lymphocytes metabolism, COS Cells, Cell Nucleus metabolism, Cloning, Molecular, Escherichia coli, HeLa Cells, Humans, Leukemia, B-Cell immunology, Molecular Sequence Data, Mutagenesis, Site-Directed, Point Mutation, Protein Structure, Secondary, Recombinant Fusion Proteins biosynthesis, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins metabolism, Trans-Activators biosynthesis, Trans-Activators chemistry, Transcription, Genetic, Transfection, Genes, MHC Class II, Nuclear Proteins, TATA-Binding Protein Associated Factors, Trans-Activators metabolism, Transcription Factor TFIID, Transcription Factors, TFII metabolism, Transcriptional Activation
- Abstract
The class II trans- activator (CIITA) is the main transcriptional co-activator for the expression of MHC class II proteins. Its N-terminal 125 amino acids function as an independent transcriptional activation domain. Analyses of the primary amino acid sequence of the activation domain predict the presence of three alpha-helices, each with a high proportion of acidic residues. Using site-directed mutagenesis, we found that two of these predicted alpha-helices are required for full transcriptional activation by CIITA. Moreover, a CIITA protein in which both functional alpha-helices have been deleted displays a dominant negative phenotype. This activation domain of CIITA interacts with the 32 kDa subunit of the general transcription complex TFIID, TAFII32. Decreased transcriptional activation by N-terminal deletions of CIITA is correlated directly with their reduced binding to TAFII32. We conclude that interactions between TAFII32 and CIITA are responsible for activation of class II genes.
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- 1997
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7. Sequence-independent inhibition of RNA transcription by DNA dumbbells and other decoys.
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Lim CS, Jabrane-Ferrat N, Fontes JD, Okamoto H, Garovoy MR, Peterlin BM, and Hunt CA
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- Animals, Binding, Competitive, COS Cells, DNA-Binding Proteins metabolism, Genes, Reporter, Oligodeoxyribonucleotides metabolism, Plasmids, RNA, Messenger, Regulatory Factor X Transcription Factors, Transcription Factors metabolism, Transcriptional Activation, Transfection, Tumor Cells, Cultured, DNA, DNA-Binding Proteins genetics, Genes, MHC Class II, RNA, Transcription Factors genetics, Transcription, Genetic
- Abstract
DNA dumbbells are stable, short segments of double-stranded DNA with closed nucleotide loops on each end, conferring resistance to exonucleases. Dumbbells may be designed to interact with transcription factors in a sequence-specific manner. The internal based paired sequence of DNA dumbbells in this study contains the X-box, a positive regulatory motif found in all MHC class II DRA promoters. In electrophoretic mobility shift assays (EMSAs), dumbbells and other oligonucleotides ('decoys') with the core X-box sequence were found to compete with the native strand for binding to X-box binding proteins (including RFX1). However, only the X-box dumbbell was capable of forming detectable complexes with such proteins using EMSA. In a model cell system, dumbbells were tested for their ability to block RFX1VP16 activation of a plasmid containing multiple repeats of the X-box linked to the CAT gene. While it appeared that dumbbells could block this activation, the effect was non-specific. This and further evidence suggests an inhibition of transcription, most likely via an interaction with the general transcriptional machinery.
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- 1997
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8. Complex architecture of major histocompatibility complex class II promoters: reiterated motifs and conserved protein-protein interactions.
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Jabrane-Ferrat N, Fontes JD, Boss JM, and Peterlin BM
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- Animals, Antigens, Neoplasm genetics, Base Sequence, Binding Sites, Burkitt Lymphoma pathology, CCAAT-Enhancer-Binding Proteins, Cell Line, Transformed, Chlorocebus aethiops, DNA, Neoplasm metabolism, HLA-DR alpha-Chains, Humans, Molecular Sequence Data, Multigene Family, Regulatory Factor X Transcription Factors, Tumor Cells, Cultured, DNA-Binding Proteins metabolism, Genes, MHC Class II, HLA-DR Antigens genetics, Herpes Simplex Virus Protein Vmw65 metabolism, Promoter Regions, Genetic, Transcription Factors metabolism
- Abstract
The S box (also known as at the H, W, or Z box) is the 5'-most element of the conserved upstream sequences in promoters of major histocompatibility complex class II genes. It is important for their B-cell-specific and interferon gamma-inducible expression. In this study, we demonstrate that the S box represents a duplication of the downstream X box. First, RFX, which is composed of the RFX5-p36 heterodimer that binds to the X box, also binds to the S box and its 5'-flanking sequence. Second, NF-Y, which binds to the Y box and increases interactions between RFX and the X box, also increases the binding of RFX to the S box. Third, RFXs bound to S and X boxes interact with each other in a spatially constrained manner. Finally, we confirmed these protein-protein and protein-DNA interactions by expressing a hybrid RFX5-VP16 protein in cells. We conclude that RFX binds to S and X boxes and that complex interactions between RFX and NF-Y direct B-cell-specific and interferon gamma-inducible expression or major histocompatibility complex class II genes.
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- 1996
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9. Binding and cooperative interactions between two B cell-specific transcriptional coactivators.
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Fontes JD, Jabrane-Ferrat N, Toth CR, and Peterlin BM
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- Base Sequence, Binding Sites, Cell Line, Chloramphenicol O-Acetyltransferase biosynthesis, Conserved Sequence, Humans, Plasmids, Promoter Regions, Genetic, Recombinant Proteins biosynthesis, TATA Box, Transfection, B-Lymphocytes metabolism, Genes, MHC Class II, Trans-Activators metabolism, Transcriptional Activation
- Abstract
The class II transactivator (CIITA) and B cell octamer-binding protein 1/octamer-binding factor 1/Oct coactivator from B cells (Bob1/OBF-1/OCA-B) represent two B cell-specific transcriptional coactivators. CIITA and Bob1 interact with proteins that bind to conserved upstream sequences in promoters of class II major histocompatibility genes and octamer-binding transcription factors Oct-1 and Oct-2, respectively. Both CIITA and Bob1 increase the expression from the DRA promoter, which is a prototypic class II promoter. Moreover, in the presence of CIITA, interactions between class II promoters and Bob1 are independent of the octamer-binding site. Using in vivo and in vitro binding assays, we confirm that Bob1 binds to CIITA. Thus, CIITA not only activates the expression of class II genes but recruits another B cell-specific coactivator to increase transcriptional activity of class II promoters in B cells.
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- 1996
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10. Class II transactivator (CIITA) is sufficient for the inducible expression of major histocompatibility complex class II genes.
- Author
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Chang CH, Fontes JD, Peterlin M, and Flavell RA
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- Base Sequence, Cycloheximide pharmacology, DNA-Binding Proteins physiology, Humans, Interferon-gamma pharmacology, Molecular Sequence Data, Protein-Tyrosine Kinases physiology, Trans-Activators genetics, Transfection, Gene Expression Regulation, Genes, MHC Class II, Trans-Activators physiology
- Abstract
The class II transactivator (CIITA) has been shown to be required for major histocompatibility complex (MHC) class II gene expression in B cells and its deficiency is responsible for a hereditary MHC class II deficiency. Here we show that CIITA is also involved in the inducible expression of class II genes upon interferon gamma (IFN-gamma) treatment. The expression of CIITA is also inducible with IFN-gamma before the induction of MHC class II mRNA. In addition, CIITA mRNA expression does not require new protein synthesis, although new protein synthesis is necessary for the transcription of class II. This suggests that synthesis of new CIITA protein may be essential to induce class II gene expression. We also showed that the JAK1 protein tyrosine kinase activity is required to induce the expression of CIITA upon IFN-gamma stimulation. This finding indicates that CIITA is part of the signaling cascade from the IFN-gamma receptor to the activation of class II genes. In addition, the expression of CIITA is sufficient to activate class II genes in the absence of IFN-gamma stimulation suggesting that CIITA is the major regulatory factor for the inducible expression of class II genes. Together, these data suggest that CIITA is the IFN-inducible cycloheximide sensitive factor previously shown to be required for the induction of MHC class II gene expression.
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- 1994
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11. Phorbol esters modulate the phosphorylation of human T-cell leukemia virus type I Tax.
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Fontes JD, Strawhecker JM, Bills ND, Lewis RE, and Hinrichs SH
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- Amino Acid Sequence, Animals, Dose-Response Relationship, Drug, Mice, Mice, Transgenic, Molecular Sequence Data, Peptide Mapping, Phosphoproteins metabolism, Phosphorylation, Phosphoserine metabolism, Time Factors, Gene Products, tax metabolism, Tetradecanoylphorbol Acetate pharmacology
- Abstract
The Tax protein from human T-cell leukemia virus type I (HTLV-I) is a 40-kDa phosphoprotein capable of activating transcription from its own long terminal repeat (LTR), as well as increasing the transcription of cellular genes. Transcriptional activation of the HTLV-I LTR has been demonstrated via a cyclic-AMP-responsive element within the 21-bp Tax-responsive elements of the LTR. Phorbol esters also upregulate expression via the LTR. Since phosphorylation of Tax may play a role in these processes, we investigated the relative effects of kinase-stimulating agents on 32P incorporation into Tax. Our studies demonstrated that the phorbol ester 4 beta-phorbol-12 beta-myristate-13 alpha-acetate greatly stimulated Tax phosphorylation in a time- and dose-dependent manner. In contrast, 8-bromoadenosine 3'-5'-cyclic monophosphate induced little stimulation of Tax phosphorylation. Tax phosphorylation occurred only on serine residues and was mapped to a single tryptic fragment in both Tax-producing human lymphocytes and mouse fibroblast cells.
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- 1993
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12. Transgenic models of human cancer.
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Hinrichs SH, Fontes JD, Bills ND, and Schneider PD
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- Adenovirus E1A Proteins genetics, Adenovirus E1B Proteins genetics, Animals, Genes, pX, Granulocyte-Macrophage Colony-Stimulating Factor biosynthesis, Humans, Mammary Tumor Virus, Mouse genetics, Mice, Mice, Transgenic, Neoplasms, Experimental genetics, Stomach Neoplasms etiology, Disease Models, Animal, Neoplasms, Experimental etiology
- Abstract
Transgenic animal technology has been useful for the direct demonstration of the tumorigenic potential of oncogenes in vivo. Over the past eight years a wide variety of oncogenes and proto-oncogenes from viral and cellular sources have been inserted into the germline of mice with subsequent development of neoplasia. Many of the published reports describe similarities between morphologic features of the transgenic mice tumors and those occurring naturally in humans. We discuss the morphologic features of selected transgenic models carrying viral genes and review their applicability to investigations directed toward understanding cancer in general and specifically gastric cancer, neurofibromatosis and leukemia. Examples of the impact of nutrition, interaction with growth factors and initiation with chemical carcinogens are presented. In one of the models functional similarities to the mechanism of oncogenesis in human T-cell leukemia virus type-1 (HTLV-1) lymphoma may exist with activation of cytokine production and subsequent autocrine stimulation. The transgenic model of proximal gastric cancer demonstrates features similar to those seen in carcinogen-induced neoplasia. These studies underscore the vast potential of transgenic models for inquiry into the genetic and epigenetic basis of human carcinogenesis. However, many features of transgenic cancer models differ from cancer in humans and the specific criteria for judging the value of transgenic models remain unclarified. For example, although the tumors arising in the HTLV-1 Tax transgenic mice show numerous similarities to human neurofibromatosis including development of lesions of the iris, the similarities do not necessarily extend to the molecular involvement of neurofibromatosis-1 (NF-1), a gene with structural and functional homology to GTPase activating proteins. Transgenic experiments of the future will ask questions beyond whether a particular gene is capable of initiating the neoplastic process. The ability to construct systems in vivo with a defined starting point that facilitate further controlled manipulation of events resulting in cancer provide great opportunities to dissect the various molecular pathways involved in such a process. Therefore, gene knockout experiments and disruption of gene function will further enhance our ability to understand the multi-factorial process of tumor development.(ABSTRACT TRUNCATED AT 400 WORDS)
- Published
- 1991
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