38 results on '"Fourie, Gerda"'
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2. Botryosphaeriaceae species associated with branch dieback and decline of macadamia trees in South Africa
- Author
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Maduke, Angel N., Slippers, Bernard, van der Linde, Elna, Wingfield, Mike J., and Fourie, Gerda
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- 2024
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3. Characterisation of the Alarm Pheromone of Bathycoelia Distincta (Pentatomidae)
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Pal, Elisa, Allison, Jeremy, Guignard, Quentin, Hurley, Brett P., Slippers, Bernard, and Fourie, Gerda
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- 2022
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4. Diversity of Fusarium species associated with healthy and malformed Syzygium cordatum inflorescences in South Africa
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Mkandawire, Rachel I., Yilmaz, Neriman, Steenkamp, Emma T., Kvas, Marija, Wingfield, Michael J., and Fourie, Gerda
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- 2022
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5. IMA genome‑F17: Draft genome sequences of an Armillaria species from Zimbabwe, Ceratocystis colombiana, Elsinoë necatrix, Rosellinia necatrix, two genomes of Sclerotinia minor, short‑read genome assemblies and annotations of four Pyrenophora teres isolates from barley grass, and a long-read genome assembly of Cercospora zeina
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Wingfield, Brenda D., Berger, Dave K., Coetzee, Martin P. A., Duong, Tuan A., Martin, Anke, Pham, Nam Q., van den Berg, Noelani, Wilken, P. Markus, Arun-Chinnappa, Kiruba Shankari, Barnes, Irene, Buthelezi, Sikelela, Dahanayaka, Buddhika Amarasinghe, Durán, Alvaro, Engelbrecht, Juanita, Feurtey, Alice, Fourie, Arista, Fourie, Gerda, Hartley, Jesse, Kabwe, Eugene N. K., Maphosa, Mkhululi, Narh Mensah, Deborah L., Nsibo, David L., Potgieter, Lizel, Poudel, Barsha, Stukenbrock, Eva H., Thomas, Chanel, Vaghefi, Niloofar, Welgemoed, Tanya, and Wingfield, Michael J.
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- 2022
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6. Genetic diversity and population structure analysis reveals the unique genetic composition of South African selected macadamia accessions
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Ranketse, Mary, Hefer, Charles A., Pierneef, Rian, Fourie, Gerda, and Myburg, Alexander A.
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- 2022
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7. First report of Botrytis cinerea causing flower blight on macadamia in South Africa.
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Jami, Fahimeh, Duma, Sanelisiwe, Fourie, Gerda, Botha, Gerhard, and Schoeman, Maritha
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MACADAMIA ,BOTRYTIS cinerea ,AGRICULTURAL biotechnology ,FLOWERS ,DNA analysis ,DIAGNOSTIC services - Abstract
Macadamia cultivation plays significant role in the economy of South Africa. Despite its importance, the industry grapples with disease‐related challenges, notably flower blight, which threatens substantial economic losses by affecting yield and nut quality. In 2022, diagnostic services at the Agricultural Research Council and the Forestry and Agricultural Biotechnology Institute received macadamia flowers displaying blight symptoms. Employing two methods for fungal isolation, 25 isolates were obtained which were classified into one group based on morphological characteristics. DNA analysis identified the isolates as Botrytis cinerea. The pathogenicity testing was conducted on macadamia flowers to confirm Koch's postulates. This is the first report of B. cinerea affecting Macadamia integrifolia Maiden & Betche in South Africa, underlining its potential threat to the industry. [ABSTRACT FROM AUTHOR]
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- 2024
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8. Multiple Gene Sequences Delimit Botryosphaeria australis sp. nov. from B. lutea
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Slippers, Bernard, Fourie, Gerda, Crous, Pedro W., Coutinho, Teresa A., Wingfield, Brenda D., and Wingfield, Michael J.
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- 2004
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9. Pantoea bathycoeliae sp. nov and Sodalis sp. are core gut microbiome symbionts of the two-spotted stink bug.
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Fourie, Arista, Venter, Stephanus N., Slippers, Bernard, and Fourie, Gerda
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STINKBUGS ,GUT microbiome ,SAP (Plant) ,BACTERIAL diversity ,BACTERIAL population ,FUNCTIONAL analysis ,MACADAMIA - Abstract
Stink bug species (Pentatomoidea superfamily) have developed an interdependence with obligate bacterial gut symbionts in specialized midgut crypts (M4 sub-region). Species of the Enterobacteriaceae family (predominantly Pantoea) are vertically transferred to their offspring and provide nutrients that cannot be obtained from plant sap food sources. However, the bacteria in the other gut compartments of stink bugs have rarely been investigated. The two-spotted stink bug, Bathycoelia distincta, is a serious pest of macadamias in South Africa. Nothing is currently known regarding its gut microbiome or how symbionts are transferred between insect generations. In this study, the consistency of B. distincta gut bacteria across geographic locations and life stages was determined with 16S rRNA metabarcoding, considering both the M4 and other gut compartments. A novel Pantoea species was found to be the primary M4 gut symbiont and is vertically transferred to the offspring. The other gut compartments had a low bacterial diversity and genera varied between stink bug populations but a Sodalis species was prominent in all populations. Sequence data of the M4 compartment were used to produce high-quality metagenome-assembled genomes (MAGs) for the Pantoea and Sodalis species. Functional analyses suggested a similar role in nutrient provision for the host, yet also unique metabolites produced by each species. The Sodalis sp. also had additional traits, such as secretion systems, that likely allowed it to establish itself in the host. The Pantoea species was described as Pantoea bathycoeliae sp. nov based on the rules of the SeqCode. [ABSTRACT FROM AUTHOR]
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- 2023
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10. Mitochondrial introgression and interspecies recombination in the Fusarium fujikuroi species complex
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Fourie, Gerda, Van der Merwe, Nicolaas A., Wingfield, Brenda D., Bogale, Mesfin, Wingfield, Michael J., and Steenkamp, Emma T.
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- 2018
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11. Transferability of PCR-based diagnostic protocols: An international collaborative case study assessing protocols targeting the quarantine pine pathogen Fusarium circinatum
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Ioos, Renaud, Aloi, Francesco, Piškur, Barbara, Guinet, Cécile, Mullett, Martin, Berbegal, Mónica, Bragança, Helena, Cacciola, Santa Olga, Oskay, Funda, Cornejo, Carolina, Adamson, Kalev, Douanla-Meli, Clovis, Kačergius, Audrius, Martínez-Álvarez, Pablo, Nowakowska, Justyna Anna, Luchi, Nicola, Vettraino, Anna Maria, Ahumada, Rodrigo, Pasquali, Matias, Fourie, Gerda, Kanetis, Loukas, Alves, Artur, Ghelardini, Luisa, Dvořák, Miloň, Sanz-Ros, Antonio, Diez, Julio J., Baskarathevan, Jeyaseelan, and Aguayo, Jaime
- Published
- 2019
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12. Reports
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Crous, Pedro W., Lombard, Lorenzo, Dearnaley, John, Fourie, Gerda, and Ashby, Ali
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- 2016
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13. Life History Traits of the Pentatomidae (Hemiptera) for the Development of Pest Management Tools.
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Pal, Elisa, Allison, Jeremy D., Hurley, Brett P., Slippers, Bernard, and Fourie, Gerda
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LIFE history theory ,STINKBUGS ,PEST control ,HEMIPTERA ,ANIMAL sexual behavior - Abstract
Knowledge of the biology of a pest is essential for building sustainable management programmes. Pentatomidae have a hemimetabolous life cycle with egg, nymphal, and adult life stages, which differ in morphological, ecological, and behavioural traits. Some of these traits, such as mating behaviour, pheromones (alarm and aggregation pheromones) and the acquisition of gut symbionts can be targeted for pest management strategies. Here, we review the available literature on these life history traits of the Pentatomidae with potential for use in management programmes. Pheromone-mediated aggregation and the disruption of symbiont acquisition are two important targets for Pentatomidae control. Other traits such as the use of alarm pheromones for enhancing natural enemies and substrate-borne vibration for mating disruption deserve further consideration. Colour vision and flight ability are still poorly studied, despite their potential importance for stink bug management. [ABSTRACT FROM AUTHOR]
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- 2023
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14. Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata
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Wingfield, Brenda D., Ades, Peter K., Al-Naemi, Fatima A., Beirn, Lisa A., Bihon, Wubetu, Crouch, Jo Anne, de Beer, Z. Wilhelm, De Vos, Lieschen, Duong, Tuan A., Fields, Christopher J., Fourie, Gerda, Kanzi, Aquillah M., Malapi-Wight, Martha, Pethybridge, Sarah J., Radwan, Osman, Rendon, Gloria, Slippers, Bernard, Santana, Quentin C., Steenkamp, Emma T., Taylor, Paul W. J., Vaghefi, Niloofar, van der Merwe, Nicolaas A., Veltri, Daniel, and Wingfield, Michael J.
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- 2015
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15. IMA genome‑F17
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Wingfield, Brenda D., Berger, Dave K., Coetzee, Martin P.A., Duong, Tuan A., Martin, Anke, Pham, Nam Q., van den Berg, Noelani, Wilken, P. Markus, Arun-Chinnappa, Kiruba Shankari, Barnes, Irene, Buthelezi, Sikelela, Dahanayaka, Buddhika Amarasinghe, Durán, Alvaro, Engelbrecht, Juanita, Feurtey, Alice, Fourie, Arista, Fourie, Gerda, Hartley, Jesse, Kabwe, Eugene N.K., and Maphosa, Mkhululi
- Abstract
IMA Fungus, 13 (1), ISSN:2210-6340, ISSN:2210-6359
- Published
- 2022
16. Diversity of Lepidoptera associated with macadamia nut damage in South Africa and development of molecular tools to monitor pest populations.
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Smith, Ashleigh K., Slippers, Bernard, Hurley, Brett P., and Fourie, Gerda
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MACADAMIA ,RESTRICTION fragment length polymorphisms ,NUTS ,LEPIDOPTERA ,GENETIC variation ,CYTOCHROME oxidase ,GENE flow - Abstract
Lepidopteran pests are of major economic importance to macadamia growers worldwide. In South Africa, four species have been associated with macadamia nut damage. Detailed information regarding species composition of the borer larvae in the nuts and the genetic diversity of these species is not however available.Lepidoptera obtained from nuts from the KwaZulu‐Natal, Mpumalanga and Limpopo provinces were identified based on COI sequencing.Thaumatotibia batrachopa represented 95% of the larvae collected in damaged nuts across all growing regions.The population genetic diversity and structure of the dominant species were determined using a 650 bp section of the mtDNA cytochrome oxidase I gene to construct a parsimony network.Rapid diagnostic tools were developed, which included a polymerase chain reaction‐restriction fragment length polymorphism (PCR‐RFLP) assay for the identification of all four species and species‐specific primers for T. batrachopa and T. leucotreta.Population studies of T. batrachopa showed a dominant COI haplotype present in all growing regions, although several unique haplotypes were also present in each region. Overall, the high haplotype diversity observed in this study is in agreement with that of a native population. The populations between the growing regions are, however, not clearly separated and might reflect recent gene flow. [ABSTRACT FROM AUTHOR]
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- 2022
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17. Diversity and Molecular Barcoding of Stink Bugs (Hemiptera: Pentatomidae) Associated with Macadamia in South Africa.
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Sonnekus, Byron, Slippers, Bernard, Hurley, Brett P., Joubert, Elizabeth, Stiller, Michael, and Fourie, Gerda
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STINKBUGS ,MACADAMIA ,CYTOCHROME oxidase ,HEMIPTERA ,DNA data banks ,GENETIC barcoding ,GROWING season - Abstract
Simple Summary: Stink bugs inflict extensive damage leading to significant yield and economic loss in the South African macadamia industry. There is currently a need for alternative control strategies to replace the reliance on chemical control in South Africa. Accurate identification and knowledge of species composition are important to inform these management practices. In this study, we identified stink bug species associated with macadamia orchards in the three main growing regions of South Africa. This was performed based on morphology and DNA barcoding. A total of 21 stink bug species were found in macadamia orchards, and Bathycoelia distincta was the dominant species found. A group of Boerias spp. were found to be dominant in KwaZulu-Natal, and this is the first report of these species associated with macadamia. Evidence of cryptic species diversity was also found within Pseudatelus raptorius and an unidentified Boerias sp. (Boerias sp. 1). Species composition fluctuated over three growing seasons and between growing regions, highlighting the need for ongoing monitoring of these important pest species. The DNA barcode database developed in this study will be valuable for future monitoring, identifications and the implementation of informed management strategies. Stink bugs are major pests of macadamia in South Africa. Accurate identification and knowledge of species composition are important to inform management practices. The overall aims of this study were to identify stink bug species from macadamia orchards in South Africa using morphology, and to establish a DNA database based on the cytochrome c oxidase subunit 1 gene region. A total of 21 stink bug species were found in macadamia orchards in KwaZulu-Natal, Limpopo and Mpumalanga provinces. Bathycoelia distincta Distant, 1878, was the dominant species throughout all three growing regions. Two unidentified species of Boerias Kirkaldy, 1909, here designated as Boerias sp. 1 and Boerias sp. 2, were the second and third most abundant species found in KwaZulu-Natal. No species of Boerias has previously been reported in association with macadamia. Evidence of a cryptic third species of Boerias was also found. Species composition fluctuated over three growing seasons in Limpopo and differed between the three growing regions during the 2019–2020 season, highlighting the need for ongoing monitoring of these important pest species. The DNA barcode database developed in this study will be valuable for future monitoring and identifications, including cryptic or polymorphic stink bug species and different life stages. [ABSTRACT FROM AUTHOR]
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- 2022
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18. Genetic diversity of the two-spotted stink bug Bathycoelia distincta (Pentatomidae) associated with macadamia orchards in South Africa.
- Author
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Pal, Elisa, Allison, Jeremy D., Hurley, Brett P., Slippers, Bernard, and Fourie, Gerda
- Abstract
The South African macadamia industry is severely affected by a complex of stink bugs, dominated by the two-spotted stink bug, Bathycoelia distincta Distant (Pentatomidae). This species was first discovered during the spring of 1984 in the Limpopo province. Although considerable effort has been spent trying to manage this pest, it continues to be a pest of concern for the macadamia industry. Information on the genetic diversity of this species is lacking, despite the potential relevance of such information for management strategies. The present study aimed to characterise the genetic diversity of B. distincta populations in South Africa. The Cytochrome c Oxidase Subunit 1 (COI) and cytochrome b (Cytb) gene regions were sequenced from individuals collected from the three main regions of macadamia production over three different seasons (2018–2020). An overall high haplotype diversity (COI = 0.744, Cytb = 0.549 and COI+Cytb = 0.875) was observed. Pairwise mean genetic distance between populations from each region varied from 0.2–0.4% in both datasets, which suggests the absence of cryptic species. The median joining network for both datasets consisted of one or two central haplotypes shared between the regions in addition to unique haplotypes observed in each region. Finally, low genetic differentiation (F
ST < 0.1), high gene flow (Nm > 1) and the absence of a correlation between genetic and geographic distance were estimated among populations. Overall, these results suggest that the B. distincta populations are not structured among the areas of macadamia production in South Africa. This might be due to its ability to feed and reproduce on various plants and its high dispersal (airborne) between the different growing regions of the country along with the rapid expansion of macadamia plantations in South Africa. [ABSTRACT FROM AUTHOR]- Published
- 2022
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19. A Detection Assay to Identify Alternative Food Sources of the Two-Spotted Stink Bug, Bathycoelia distincta (Hemiptera: Pentatomidae).
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Fourie, Arista, Venter, Stephanus N., Slippers, Bernard, and Fourie, Gerda
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STINKBUGS ,TEA ,HEMIPTERA ,PLANT DNA ,INTEGRATED pest control ,COMMON sunflower ,NUTS ,CORN - Abstract
The two-spotted stink bug, Bathycoelia distincta Distant (Hemiptera: Pentatomidae), is a serious pest in South African macadamia orchards. This pest is predominantly controlled using insecticides, thus alternative control methods are essential. The stink bugs arrive as adults in the orchards, during the early nut set season, but little is known about their alternative plant hosts before their arrival. The aim of this study was to develop a PCR-based metabarcoding assay to identify plant material in the gut of B. distincta. Thereafter, the persistence of plant DNA in the gut, after switching food sources, was determined by rearing the stink bugs on Zea mays L. (Cyperales: Poaceae), transferring them to Macadamia sp. and then collecting insects at different time points. As a proof of concept, the assay was tested on insects collected from commercial macadamia orchards to determine if it can identify alternative food sources. The chloroplast gene markers, trnL and trnF, were most successful for plant DNA amplification. The time trial suggested that plant material can be detected 24 h after switching to the alternate food source and one of the samples still contained Z. mays DNA after five days. Various plant species were detected from the orchard collected samples, including known food sources of other stink bugs, such as tea plants (Camellia sinensis L. (Ericales:Theaceae)) and sunflowers (Helianthus annuus L. (Asterales: Asteraceae)). This study provides the first indication of potential alternative food sources of B. distincta. The assay developed in this study can now be implemented for large-scale field surveys to contribute to future integrated pest management strategies. [ABSTRACT FROM AUTHOR]
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- 2022
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20. Evolutionary relationships among the Fusarium oxysporum f. sp. cubense vegetative compatibility groups
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Fourie, Gerda, Steenkamp, E.T., Gordon, T.R., and Viljoen, A.
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Fusarium -- Genetic aspects ,Fusarium -- Physiological aspects ,Mitochondrial DNA -- Research ,Nucleotide sequencing -- Usage ,Biological sciences - Abstract
Genetic relatedness among and within vegetative compatibility groups (VCGs) of Fusarium oxysporum f. sp. cubense is analyzed by sequencing two nuclear and two mitochondrial DNA regions in a collection of 70 Furasium oxysporum isolates that has included representatives of 20 VCGs of Fusarium oxysporum f. sp. cubense, other formae speciales and nonpathogens. The isolates examined have harbored one of the two mating-type idiomorphs, but never both, suggesting a heterothallic mating system should sexual reproduction occur.
- Published
- 2009
21. IMA Genome-F 4: Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata
- Author
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Wingfield, Brenda D., Ades, Peter K., Al-Naemi, Fatima A., Beirn, Lisa A., Bihon, Wubetu, Crouch, Jo Anne, de Beer, Z. Wilhelm, De Vos, Lieschen, Duong, Tuan A., Fields, Christopher J., Fourie, Gerda, Kanzi, Aquillah M., Malapi-Wight, Martha, Pethybridge, Sarah J., Radwan, Osman, Rendon, Gloria, Slippers, Bernard, Santana, Quentin C., Steenkamp, Emma T., Taylor, Paul W.J., Vaghefi, Niloofar, van der Merwe, Nicolaas A., Veltri, Daniel, and Wingfield, Michael J.
- Subjects
pink patch disease ,ray blight ,blue stain ,canker pathogen ,basal stalk and root rot ,black scorch disease - Abstract
The genomes of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygami, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata are presented in this genome announcement. These seven genomes are from endophytes, plant pathogens and economically important fungal species. The genome sizes range from 26.6 Mb in the case of Leptographium lundbergii to 44 Mb for Chrysoporthe austroafricana. The availability of these genome data will provide opportunities to resolve longstanding questions regarding the taxonomy of species in these genera, and may contribute to our understanding of the lifestyles through comparative studies with closely related organisms. Genomics Research Institute (University of Pretoria), Tree Protection Co-operative Programme (TPCP) and the DST-NRF Centre of Excellence in Tree Health Biotechnology (CTHB) at the Forestry and Agricultural Biotechnology Institute (FABI), together with the National Research Foundation (NRF) and the University of Pretoria, Pretoria, South Africa. The research on Stagonosporopsis tanaceti was supported by Botanical Resources Australia, Agricultural Services Pty Ltd,, and USDA-NIFA Hatch project NYG-625424, managed by The New York Agricultural Experiment Station, Cornell University (Geneva, NY). The genome sequencing of Limonomyces culmigenus (CBS661.85) was funded by the US Department of Agriculture (USDA), Agricultural Research Service (ARS). The research on Thielaviopsis punctulata was made possible by a grant from the Qatar National Research Fund (QNRF) under National Priorities Research Program (NPRP-5-1002-4-010).
- Published
- 2015
22. The synergistic effect of concatenation in phylogenomics: the case in Pantoea.
- Author
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Palmer, Marike, Venter, Stephanus N., McTaggart, Alistair R., Coetzee, Martin P. A., Van Wyk, Stephanie, Avontuur, Juanita R., Beukes, Chrizelle W., Fourie, Gerda, Santana, Quentin C., Van Der Nest, Magriet A., Blom, Jochen, and Steenkamp, Emma T.
- Subjects
HORIZONTAL gene transfer ,PHYLOGENY ,GENES ,NUCLEOTIDE sequencing - Abstract
With the increased availability of genome sequences for bacteria, it has become routine practice to construct genome-based phylogenies. These phylogenies have formed the basis for various taxonomic decisions, especially for resolving problematic relationships between taxa. Despite the popularity of concatenating shared genes to obtain well-supported phylogenies, various issues regarding this combined-evidence approach have been raised. These include the introduction of phylogenetic error into datasets, as well as incongruence due to organism-level evolutionary processes, particularly horizontal gene transfer and incomplete lineage sorting. Because of the huge effect that this could have on phylogenies, we evaluated the impact of phylogenetic conflict caused by organism-level evolutionary processes on the established species phylogeny for Pantoea, a member of the Enterobacterales. We explored the presence and distribution of phylogenetic conflict at the gene partition and nucleotide levels, by identifying putative inter-lineage recombination events that might have contributed to such conflict. Furthermore, we determined whether smaller, randomly constructed datasets had sufficient signal to reconstruct the current species tree hypothesis or if they would be overshadowed by phylogenetic incongruence. We found that no individual gene tree was fully congruent with the species phylogeny of Pantoea, although many of the expected nodes were supported by various individual genes across the genome. Evidence of recombination was found across all lineages within Pantoea, and provides support for organism-level evolutionary processes as a potential source of phylogenetic conflict. The phylogenetic signal from at least 70 random genes recovered robust, well-supported phylogenies for the backbone and most species relationships of Pantoea, and was unaffected by phylogenetic conflict within the dataset. Furthermore, despite providing limited resolution among taxa at the level of single gene trees, concatenated analyses of genes that were identified as having no signal resulted in a phylogeny that resembled the species phylogeny of Pantoea. This distribution of signal and noise across the genome presents the ideal situation for phylogenetic inference, as the topology from a ≥70-gene concatenated species phylogeny is not driven by single genes, and our data suggests that this finding may also hold true for smaller datasets. We thus argue that, by using a concatenation-based approach in phylogenomics, one can obtain robust phylogenies due to the synergistic effect of the combined signal obtained from multiple genes. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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23. Association of the pitch canker pathogen Fusarium circinatum with grass hosts in commercial pine production areas of South Africa
- Author
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Swett, Cassandra L, Porter, Bernice, Fourie, Gerda, Steenkamp, Emma T, Gordon, Thomas R, and Wingfield, Michael J
- Abstract
The pitch canker pathogen, Fusarium circinatum, has major impacts on production in pine nurseries and plantations in South Africa. Thus far, efforts to reduce local spread have focused on rouging of infected pines and sanitation to eliminate local sources of inoculum. Although the host range of F. circinatum was thought to be limited to pines and Douglas-fir, recent studies in California indicate that this fungus is capable of infecting grasses as a symptomless endophyte. Consequently, it is possible that grasses represent a reservoir of inoculum that influences the occurrence of disease in South African pine nurseries and plantations. The objectives of this study were to survey a wide range of grass species in both nurseries and plantations in South Africa for the presence of F. circinatum. In all, 22 species of grass were sampled at a nursery in Mpumulanga and in a plantation on the Western Cape. Isolates obtained from grasses were identified based on morphological criteria and DNA sequence data. Fusarium circinatum was recovered from vegetative tissues of four grass species including Briza maxima, Ehrharta erecta var. erecta, Pentameris pallida and one species that could not be identified. All isolates were pathogenic to pines and comparable in virulence to a known F. circinatum isolate that was included as a positive control. These studies indicate that grasses may constitute inoculum reservoirs that could facilitate persistence and dissemination of the pathogen in nurseries, and provide a means for the pathogen to move between widely separated pine stands, where grass hosts occur in intervening areas.Keywords: alternate hosts, Fusarium circinatum, grasses, Pinus, pitch canker, PoaceaeSouthern Forests 2014, 76(3): 161–166
- Published
- 2014
24. Effect on nursery and field performance of Pinus patula seedlings after inoculation with Fusarium circinatum
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Jones, Nicoletta B, Ford, Craig M, Light, Marnie E, Nadel, Ryan L, Greyling, Izette, Fourie, Gerda, Wingfield, Michael J, and Morris, Andrew R
- Abstract
Fusarium circinatum is an important fungal pathogen of Pinus species. In South Africa, it is the most significant pathogen of Pinus patula seedlings in forestry nurseries where it presents a substantial constraint to productivity and can continue to cause mortality in-field for up to two years after establishment. This study describes the results from two trials where P. patula seedlings were inoculated with F. circinatum to determine the impact of the pathogen on nursery and field performance. Seedlings were also subjected to water stress treatments to ascertain whether this would trigger the onset of disease symptoms. Inoculum load and timing of inoculation had significant effects on seedling survival in both the nursery and field. High inoculum concentrations caused greater levels of mortality and, where seedlings were inoculated at a young age, they showed higher levels of susceptibility to F. circinatum. Temporary water-stress in the nursery produced smaller plants and improved in-field survival, but this treatment did not trigger higher mortality in inoculated treatments. On the other hand, transplant stress was a major contributor to the higher levels of mortality observed in inoculated treatments. Overall, these studies confirmed that infection in the nursery leads to the disease problems observed during early plant establishment in the field.Keywords: Fusarium circinatum, inoculation, nursery-to-field, Pinus patula, seedlings, survivalSouthern Forests 2014, 76(3): 125–136
- Published
- 2014
25. Re-use of seedling containers and Fusarium circinatum association with asymptomatic Pinus patula planting stock
- Author
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Morris, Andrew R, Fourie, Gerda, Greyling, Izette, Steenkamp, Emma T, and Jones, Nicoletta B
- Abstract
Fusarium circinatum is a pathogen causing serious post-planting mortality of Pinus patula seedlings in southern Africa. Containerised planting stock that is asymptomatic but associated with F. circinatum in the nursery is thought to be the cause of this problem. The aim of this study was to determine if re-use of seedling containers could be a source of inoculum resulting in asymptomatic planting stock and increased post-planting mortality of P. patula. Two experiments were conducted in successive years comparing nursery cull of symptomatic seedlings, seedling growth, association of F. circinatum with asymptomatic seedlings and post-planting mortality for crops raised in re-used containers, with and without sanitation, and factory-new containers. Each experiment consisted of a nursery production trial followed by out-planting into pots to assess post-planting mortality. Our results show that re-use of containers without sanitation increases the cull of symptomatic seedlings, incidence of F. circinatum associated with asymptomatic seedlings and post-planting mortality compared with the re-use of containers after steam sanitation or factory-new containers. Growth of asymptomatic seedlings was unaffected by container treatment or association with F. circinatum and in the absence of wilt symptoms the root system did not exhibit typical discolouration. Watering frequency did not influence post-planting mortality in pots. The comparison of two open-pollinated seed mixes of P. patula that, based on seedling stem inoculation screening, represented susceptible and tolerant material did not show differences in nursery cull or post-planting mortality. This work demonstrated that natural contamination of re-used containers can be a primary source of inoculum producing asymptomatic seedlings associated with F. circinatum that will succumb to the pathogen after field planting. The process of seedling infection, apparent latent infection in the seedling and expression of disease after planting needs greater understanding to improve nursery hygiene measures to control this disease.Keywords: containerised seedling nursery, Fusarium circinatum, Pinus patula, post-planting mortalitySouthern Forests 2014, 76(3): 177–187
- Published
- 2014
26. Characterisation of South African isolates of Fusarium oxysporum f.sp. cubense from Cavendish bananas
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Visser, Marinda, Gordon, Tom, Fourie, Gerda, and Viljoen, Altus
- Subjects
phylogenetics ,bananas ,mating types ,vegetative compatibility groups ,Fusarium wilt - Abstract
Fusarium wilt, caused bythe soil-borne fungusFusarium oxysporum f.sp. cubense (Foc), is a serious vascular disease of bananas in most subtropical and tropical regions of the world. Twenty-four vegetative compatibility groups (VCGs) and three pathogenic races have been identified in Foc, reflecting a relatively high genetic diversity for an asexual fungus. To characterise a South African population of Foc, a collection of 128 isolates from diverse geographic origins were isolated from diseased Cavendish bananas and subjected to VCG analysis and sequencing of the translation elongation factor 1-α (TEF) gene region. The presence of mating type genes was also determined using MAT-1 and MAT-2 specific primers. VCG 0120 was established as the only VCG of Foc present in the South African population studied. Only the MAT-2 idiomorph was present in all the local isolates of Foc. A phylogenetic analysis of DNA sequences of the TEF gene region revealed that the South African isolates grouped closely with VCG 0120 isolates from Australia and Asia. These results suggest that the South African population of Foc was most likely introduced in a limited number of events and that it had spread with infected planting material within the country. The presence of only one mating type and the limited diversity in this pathogen render it unlikely to rapidly overcome disease management strategies involving host resistance.
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- 2010
27. The distribution and host range of the banana Fusarium wilt fungus, Fusarium oxysporum f. sp. cubense, in Asia.
- Author
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Mostert, Diane, Molina, Agustin B., Daniells, Jeff, Fourie, Gerda, Hermanto, Catur, Chao, Chih-Ping, Fabregar, Emily, Sinohin, Vida G., Masdek, Nik, Thangavelu, Raman, Li, Chunyu, Yi, Ganyun, Mostert, Lizel, and Viljoen, Altus
- Subjects
FUSARIUM wilt of banana ,FUSARIUM oxysporum ,SOIL fungi ,POLYMERASE chain reaction - Abstract
Fusarium oxysporum formae specialis cubense (Foc) is a soil-borne fungus that causes Fusarium wilt, which is considered to be the most destructive disease of bananas. The fungus is believed to have evolved with its host in the Indo-Malayan region, and from there it was spread to other banana-growing areas with infected planting material. The diversity and distribution of Foc in Asia was investigated. A total of 594 F. oxysporum isolates collected in ten Asian countries were identified by vegetative compatibility groups (VCGs) analysis. To simplify the identification process, the isolates were first divided into DNA lineages using PCR-RFLP analysis. Six lineages and 14 VCGs, representing three Foc races, were identified in this study. The VCG complex 0124/5 was most common in the Indian subcontinent, Vietnam and Cambodia; whereas the VCG complex 01213/16 dominated in the rest of Asia. Sixty-nine F. oxysporum isolates in this study did not match any of the known VCG tester strains. In this study, Foc VCG diversity in Bangladesh, Cambodia and Sri Lanka was determined for the first time and VCGs 01221 and 01222 were first reported from Cambodia and Vietnam. New associations of Foc VCGs and banana cultivars were recorded in all the countries where the fungus was collected. Information obtained in this study could help Asian countries to develop and implement regulatory measures to prevent the incursion of Foc into areas where it does not yet occur. It could also facilitate the deployment of disease resistant banana varieties in infested areas. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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28. Genome-Wide Macrosynteny among Fusarium Species in the Gibberella fujikuroi Complex Revealed by Amplified Fragment Length Polymorphisms.
- Author
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De Vos, Lieschen, Steenkamp, Emma T., Martin, Simon H., Santana, Quentin C., Fourie, Gerda, van der Merwe, Nicolaas A., Wingfield, Michael J., and Wingfield, Brenda D.
- Subjects
FUSARIUM genetics ,GIBBERELLA fujikuroi ,FUNGI classification ,GENETIC polymorphisms ,CROPS ,FUNGI - Abstract
The Gibberella fujikuroi complex includes many Fusarium species that cause significant losses in yield and quality of agricultural and forestry crops. Due to their economic importance, whole-genome sequence information has rapidly become available for species including Fusarium circinatum, Fusarium fujikuroi and Fusarium verticillioides, each of which represent one of the three main clades known in this complex. However, no previous studies have explored the genomic commonalities and differences among these fungi. In this study, a previously completed genetic linkage map for an interspecific cross between Fusarium temperatum and F. circinatum, together with genomic sequence data, was utilized to consider the level of synteny between the three Fusarium genomes. Regions that are homologous amongst the Fusarium genomes examined were identified using in silico and pyrosequenced amplified fragment length polymorphism (AFLP) fragment analyses. Homology was determined using BLAST analysis of the sequences, with 777 homologous regions aligned to F. fujikuroi and F. verticillioides. This also made it possible to assign the linkage groups from the interspecific cross to their corresponding chromosomes in F. verticillioides and F. fujikuroi, as well as to assign two previously unmapped supercontigs of F. verticillioides to probable chromosomal locations. We further found evidence of a reciprocal translocation between the distal ends of chromosome 8 and 11, which apparently originated before the divergence of F. circinatum and F. temperatum. Overall, a remarkable level of macrosynteny was observed among the three Fusarium genomes, when comparing AFLP fragments. This study not only demonstrates how in silico AFLPs can aid in the integration of a genetic linkage map to the physical genome, but it also highlights the benefits of using this tool to study genomic synteny and architecture. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
29. Facilitating Psychological Well-Being Through Hypnotherapeutic Interventions.
- Author
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Guse, Tharina and Fourie, Gerda
- Published
- 2013
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30. Culture-independent detection and quantification of Fusarium circinatum in a pine-producing seedling nursery.
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Fourie, Gerda, Wingfield, Michael J, Wingfield, Brenda D, Jones, Nicky B, Morris, Andrew R, and Steenkamp, Emma T
- Subjects
FUSARIUM ,TUBERCULARIACEAE ,CYLINDROCARPON ,CONIDIA ,FUNGAL spores - Abstract
The primary symptoms associated withFusarium circinatuminfection in pine seedling nurseries are root and collar rot, shoot and tip die-back and seedling mortality. Management of this pathogen in nurseries usually involves the integration of various strategies relating to sanitation, insect control and fungicide treatment. The overall goal of this study was to use quantitative real-time PCR (qPCR) to detect and quantify the airborne inoculum ofF. circinatumin a commercial pine seedling nursery. For this purpose, an existing qPCR method was optimised and evaluated for its efficacy to quantify and monitor airborne conidia over a one-year period. Results showed thatF. circinatumoccurred at relatively low levels in the nursery throughout the year and that its distribution was spatially sporadic. The data suggest that standard nursery sanitation practices in the test nursery maintained the airborne inoculum ofF. circinatumat low levels. The uneven distribution of infection also suggests that airborne inoculum does not represent the primary source of inoculum for theF. circinatum-associated seedling disease. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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- View/download PDF
31. Evidence for inter-specific recombination among the mitochondrial genomes of Fusarium species in the Gibberella fujikuroi complex.
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Fourie, Gerda, Van der Merwe, Nicolaas A., Wingfield, Brenda D., Bogale, Mesfin, Tudzynski, Bettina, Wingfield, Michael J., and Steenkamp, Emma T.
- Subjects
- *
FUSARIUM oxysporum , *GENOMES , *GENOMICS , *MYCOLOGY , *PARASITIC plants - Abstract
Background: The availability of mitochondrial genomes has allowed for the resolution of numerous questions regarding the evolutionary history of fungi and other eukaryotes. In the Gibberella fujikuroi species complex, the exact relationships among the so-called "African", "Asian" and "American" Clades remain largely unresolved, irrespective of the markers employed. In this study, we considered the feasibility of using mitochondrial genes to infer the phylogenetic relationships among Fusarium species in this complex. The mitochondrial genomes of representatives of the three Clades (Fusarium circinatum, F. verticillioides and F. fujikuroi) were characterized and we determined whether or not the mitochondrial genomes of these fungi have value in resolving the higher level evolutionary relationships in the complex. Results: Overall, the mitochondrial genomes of the three species displayed a high degree of synteny, with all the genes (protein coding genes, unique ORFs, ribosomal RNA and tRNA genes) in identical order and orientation, as well as introns that share similar positions within genes. The intergenic regions and introns generally contributed significantly to the size differences and diversity observed among these genomes. Phylogenetic analysis of the concatenated protein-coding dataset separated members of the Gibberella fujikuroi complex from other Fusarium species and suggested that F. fujikuroi ("Asian" Clade) is basal in the complex. However, individual mitochondrial gene trees were largely incongruent with one another and with the concatenated gene tree, because six distinct phylogenetic trees were recovered from the various single gene datasets. Conclusion: The mitochondrial genomes of Fusarium species in the Gibberella fujikuroi complex are remarkably similar to those of the previously characterized Fusarium species and Sordariomycetes. Despite apparently representing a single replicative unit, all of the genes encoded on the mitochondrial genomes of these fungi do not share the same evolutionary history. This incongruence could be due to biased selection on some genes or recombination among mitochondrial genomes. The results thus suggest that the use of individual mitochondrial genes for phylogenetic inference could mask the true relationships between species in this complex. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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32. Global Geographic Distribution and Host Range of Fusarium circinatum, the Causal Agent of Pine Pitch Canker.
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Drenkhan, Rein, Ganley, Beccy, Martín-García, Jorge, Vahalík, Petr, Adamson, Kalev, Adamčíková, Katarína, Ahumada, Rodrigo, Blank, Lior, Bragança, Helena, Capretti, Paolo, Cleary, Michelle, Cornejo, Carolina, Davydenko, Kateryna, Diez, Julio J., Lehtijärvi, Hatice Tuğba Doğmuş, Dvořák, Miloň, Enderle, Rasmus, Fourie, Gerda, Georgieva, Margarita, and Ghelardini, Luisa
- Subjects
FUSARIUM ,CURRENT distribution ,TREE seedlings ,TREE age ,DISEASE management ,PINACEAE - Abstract
Fusarium circinatum, the causal agent of pine pitch canker (PPC), is currently one of the most important threats of Pinus spp. globally. This pathogen is known in many pine-growing regions, including natural and planted forests, and can affect all life stages of trees, from emerging seedlings to mature trees. Despite the importance of PPC, the global distribution of F. circinatum is poorly documented, and this problem is also true of the hosts within countries that are affected. The aim of this study was to review the global distribution of F. circinatum, with a particular focus on Europe. We considered (1) the current and historical pathogen records, both positive and negative, based on confirmed reports from Europe and globally; (2) the genetic diversity and population structure of the pathogen; (3) the current distribution of PPC in Europe, comparing published models of predicted disease distribution; and (4) host susceptibility by reviewing literature and generating a comprehensive list of known hosts for the fungus. These data were collated from 41 countries and used to compile a specially constructed geo-database. A review of 6297 observation records showed that F. circinatum and the symptoms it causes on conifers occurred in 14 countries, including four in Europe, and is absent in 28 countries. Field observations and experimental data from 138 host species revealed 106 susceptible host species including 85 Pinus species, 6 non-pine tree species and 15 grass and herb species. Our data confirm that susceptibility to F. circinatum varies between different host species, tree ages and environmental characteristics. Knowledge on the geographic distribution, host range and the relative susceptibility of different hosts is essential for disease management, mitigation and containment strategies. The findings reported in this review will support countries that are currently free of F. circinatum in implementing effective procedures and restrictions and prevent further spread of the pathogen. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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33. Sampling and Detection Strategies for the Pine Pitch Canker (PPC) Disease Pathogen Fusarium circinatum in Europe.
- Author
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Vainio, Eeva J., Bezos, Diana, Bragança, Helena, Cleary, Michelle, Fourie, Gerda, Georgieva, Margarita, Ghelardini, Luisa, Hannunen, Salla, Ioos, Renaud, Martín-García, Jorge, Martínez-Álvarez, Pablo, Mullett, Martin, Oszako, Tomasz, Papazova-Anakieva, Irena, Piškur, Barbara, Romeralo, Carmen, Sanz-Ros, Antonio V., Steenkamp, Emma T., Tubby, Katherine, and Wingfield, Michael J.
- Subjects
FUSARIOSIS ,INSECT trapping ,DOUGLAS fir ,PINE ,SOIL sampling ,PHYTOSANITATION ,PINACEAE - Abstract
Fusarium circinatum Nirenberg & O'Donnel is listed among the species recommended for regulation as quarantine pests in Europe. Over 60 Pinus species are susceptible to the pathogen and it also causes disease on Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) and species in genera such as Picea and Larix. The European Food Safety Authority considers the probability of new introductions—via contaminated seeds, wood material, soil and growing substrates, natural means and human activities—into the EU very likely. Due to early detection, constant surveillance and control measures, F. circinatum outbreaks have officially been eradicated in Italy and France. However, the global spread of F. circinatum suggests that the pathogen will continue to be encountered in new environments in the future. Therefore, continuous surveillance of reproductive material, nurseries and plantations, prompt control measures and realistic contingency plans will be important in Europe and elsewhere to limit disease spread and the "bridgehead effect", where new introductions of a tree pathogen become increasingly likely as new environments are invaded, must be considered. Therefore, survey programs already implemented to limit the spread in Europe and that could be helpful for other EU countries are summarized in this review. These surveys include not only countries where pitch canker is present, such as Portugal and Spain, but also several other EU countries where F. circinatum is not present. Sampling protocols for seeds, seedlings, twigs, branches, shoots, soil samples, spore traps and insects from different studies are collated and compiled in this review. Likewise, methodology for morphological and molecular identification is herein presented. These include conventional PCR with a target-specific region located in the intergenic spacer region, as well as several real-time PCR protocols, with different levels of specificity and sensitivity. Finally, the global situation and future perspectives are addressed. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
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34. Architecture and Distribution of Introns in Core Genes of Four Fusarium Species.
- Author
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Phasha, Mmatshepho M., Wingfield, Brenda D., Coetzee, Martin P. A., Santana, Quentin C., Fourie, Gerda, and Steenkamp, Emma T.
- Subjects
- *
INTRONS , *FUSARIUM genetics , *NUCLEOTIDE sequencing - Abstract
Removal of introns from transcribed RNA represents a crucial step during the production of mRNA in eukaryotes. Available whole-genome sequences and expressed sequence tags (ESTs) have increased our knowledge of this process and revealed various commonalities among eukaryotes. However, certain aspects of intron structure and diversity are taxon-specific, which can complicate the accuracy of in silico gene prediction methods. Using core genes, we evaluated the distribution and architecture of Fusarium circinatum spliceosomal introns, and linked these characteristics to the accuracy of the predicted gene models of the genome of this fungus. We also evaluated intron distribution and architecture in F. verticillioides, F. oxysporum, and F. graminearum, and made comparisons with F. circinatum. Results indicated that F. circinatum and the three other Fusarium species have canonical 59 and 39 splice sites, but with subtle differences that are apparently not shared with those of other fungal genera. The polypyrimidine tract of Fusarium introns was also found to be highly divergent among species and genes. Furthermore, the conserved adenosine nucleoside required during the first step of splicing is contained within unique branch site motifs in certain Fusarium introns. Data generated here show that introns of F. circinatum, as well as F. verticillioides, F. oxysporum, and F. graminearum, are characterized by a number of unique features such as the CTHAH and ACCAT motifs of the branch site. Incorporation of such information into genome annotation software will undoubtedly improve the accuracy of gene prediction methods used for Fusarium species and related fungi. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
35. First fungal genome sequence from Africa: A preliminary analysis.
- Author
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Wingfield, Brenda D., Steenkamp, Emma T., Santana, Quentin C., Coetzee, Martin P. A., Bam, Stefan, Barnes, Irene, Beukes, Chrizelle W., Wai Yin Chan, de Vos, Lieschen, Fourie, Gerda, Friend, Melanie, Gordon, Thomas R., Herron, Darryl A., Holt, Carson, Korf, Ian, Kvas, Marija, Martin, Simon H., Osmond^Mlonyeni, X., Naidoo, Kershney, and Phasha, Mmatshepho M.
- Subjects
- *
FUNGAL genomes , *LIFE sciences , *NUCLEOTIDE sequence , *GENOMICS - Abstract
Some of the most significant breakthroughs in the biological sciences this century will emerge from the development of next generation sequencing technologies. The ease of availability of DNA sequence made possible through these new technologies has given researchers opportunities to study organisms in a manner that was not possible with Sanger sequencing. Scientists will, therefore, need to embrace genomics, as well as develop and nurture the human capacity to sequence genomes and utilise the 'tsunami' of data that emerge from genome sequencing. In response to these challenges, we sequenced the genome of Fusarium circinatum, a fungal pathogen of pine that causes pitch canker, a disease of great concern to the South African forestry industry. The sequencing work was conducted in South Africa, making F. circinatum the first eukaryotic organism for which the complete genome has been sequenced locally. Here we report on the process that was followed to sequence, assemble and perform a preliminary characterisation of the genome. Furthermore, details of the computer annotation and manual curation of this genome are presented. The F. circinatum genome was found to be nearly 44 million bases in size, which is similar to that of four other Fusarium genomes that have been sequenced elsewhere. The genome contains just over 15 000 open reading frames, which is less than that of the related species, Fusarium oxysporum, but more than that for Fusarium verticillioides. Amongst the various putative gene clusters identified in F. circinatum, those encoding the secondary metabolites fumosin and fusarin appeared to harbour evidence of gene translocation. It is anticipated that similar comparisons of other loci will provide insights into the genetic basis for pathogenicity of the pitch canker pathogen. Perhaps more importantly, this project has engaged a relatively large group of scientists including students in a significant genome project that is certain to provide a platform for growth in this important area of research in the future. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
36. Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex.
- Author
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Geiser DM, Al-Hatmi AMS, Aoki T, Arie T, Balmas V, Barnes I, Bergstrom GC, Bhattacharyya MK, Blomquist CL, Bowden RL, Brankovics B, Brown DW, Burgess LW, Bushley K, Busman M, Cano-Lira JF, Carrillo JD, Chang HX, Chen CY, Chen W, Chilvers M, Chulze S, Coleman JJ, Cuomo CA, de Beer ZW, de Hoog GS, Del Castillo-Múnera J, Del Ponte EM, Diéguez-Uribeondo J, Di Pietro A, Edel-Hermann V, Elmer WH, Epstein L, Eskalen A, Esposto MC, Everts KL, Fernández-Pavía SP, da Silva GF, Foroud NA, Fourie G, Frandsen RJN, Freeman S, Freitag M, Frenkel O, Fuller KK, Gagkaeva T, Gardiner DM, Glenn AE, Gold SE, Gordon TR, Gregory NF, Gryzenhout M, Guarro J, Gugino BK, Gutierrez S, Hammond-Kosack KE, Harris LJ, Homa M, Hong CF, Hornok L, Huang JW, Ilkit M, Jacobs A, Jacobs K, Jiang C, Jiménez-Gasco MDM, Kang S, Kasson MT, Kazan K, Kennell JC, Kim HS, Kistler HC, Kuldau GA, Kulik T, Kurzai O, Laraba I, Laurence MH, Lee T, Lee YW, Lee YH, Leslie JF, Liew ECY, Lofton LW, Logrieco AF, López-Berges MS, Luque AG, Lysøe E, Ma LJ, Marra RE, Martin FN, May SR, McCormick SP, McGee C, Meis JF, Migheli Q, Mohamed Nor NMI, Monod M, Moretti A, Mostert D, Mulè G, Munaut F, Munkvold GP, Nicholson P, Nucci M, O'Donnell K, Pasquali M, Pfenning LH, Prigitano A, Proctor RH, Ranque S, Rehner SA, Rep M, Rodríguez-Alvarado G, Rose LJ, Roth MG, Ruiz-Roldán C, Saleh AA, Salleh B, Sang H, Scandiani MM, Scauflaire J, Schmale DG 3rd, Short DPG, Šišić A, Smith JA, Smyth CW, Son H, Spahr E, Stajich JE, Steenkamp E, Steinberg C, Subramaniam R, Suga H, Summerell BA, Susca A, Swett CL, Toomajian C, Torres-Cruz TJ, Tortorano AM, Urban M, Vaillancourt LJ, Vallad GE, van der Lee TAJ, Vanderpool D, van Diepeningen AD, Vaughan MM, Venter E, Vermeulen M, Verweij PE, Viljoen A, Waalwijk C, Wallace EC, Walther G, Wang J, Ward TJ, Wickes BL, Wiederhold NP, Wingfield MJ, Wood AKM, Xu JR, Yang XB, Yli-Mattila T, Yun SH, Zakaria L, Zhang H, Zhang N, Zhang SX, and Zhang X
- Subjects
- Phylogeny, Plant Diseases, Plants, Fusarium genetics
- Abstract
Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user's needs and established successful practice. In 2013, the Fusarium community voiced near unanimous support for a concept of Fusarium that represented a clade comprising all agriculturally and clinically important Fusarium species, including the F. solani species complex (FSSC). Subsequently, this concept was challenged in 2015 by one research group who proposed dividing the genus Fusarium into seven genera, including the FSSC described as members of the genus Neocosmospora , with subsequent justification in 2018 based on claims that the 2013 concept of Fusarium is polyphyletic. Here, we test this claim and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a genus Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students, and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species described as genus Neocosmospora were recombined in genus Fusarium , and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium , as it remains the best scientific, nomenclatural, and practical taxonomic option available.
- Published
- 2021
- Full Text
- View/download PDF
37. IMA Genome-F 4: Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata.
- Author
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Wingfield BD, Ades PK, Al-Naemi FA, Beirn LA, Bihon W, Crouch JA, de Beer ZW, De Vos L, Duong TA, Fields CJ, Fourie G, Kanzi AM, Malapi-Wight M, Pethybridge SJ, Radwan O, Rendon G, Slippers B, Santana QC, Steenkamp ET, Taylor PW, Vaghefi N, van der Merwe NA, Veltri D, and Wingfield MJ
- Abstract
The genomes of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygami, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata are presented in this genome announcement. These seven genomes are from endophytes, plant pathogens and economically important fungal species. The genome sizes range from 26.6 Mb in the case of Leptographium lundbergii to 44 Mb for Chrysoporthe austroafricana. The availability of these genome data will provide opportunities to resolve longstanding questions regarding the taxonomy of species in these genera, and may contribute to our understanding of the lifestyles through comparative studies with closely related organisms.
- Published
- 2015
- Full Text
- View/download PDF
38. An integrated hypnotherapeutic model for the treatment of childhood sexual trauma: a case study.
- Author
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Fourie G and Guse T
- Subjects
- Adult, Child, Preschool, Combined Modality Therapy, Ego, Female, Humans, Suggestion, Child Abuse, Sexual psychology, Child Abuse, Sexual therapy, Hypnosis methods, Psychotherapy methods, Stress Disorders, Post-Traumatic psychology, Stress Disorders, Post-Traumatic therapy
- Abstract
Sexual abuse appears to constitute a major risk factor for a variety of problems in adult life. The effects of abuse on adult living are not uniform therefore intervention strategies should be individualized to address unique symptom constellations. The purpose of this paper is to introduce an integrated Ericksonian and Ego state therapy approach, based on a strengths perspective for the treatment of survivors of childhood sexual abuse. The theoretical foundation for this model is described, followed by a case study. The case study demonstrates how application of this model enabled the client to resolve the experience of sexual abuse, as well as to enhance her sense of general psychological well-being.
- Published
- 2011
- Full Text
- View/download PDF
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