94 results on '"H. Bora"'
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2. A proposed emergency response site selection for preventing pollution and collision effects using neutrosophic evaluation based on distance from average solution method and a numerical application in the Strait of Canakkale (Dardanelles)
- Author
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Usluer, H. Bora, Bora, Ali Gokhan, Cakmak, Emre, and Arslan, Aykut
- Published
- 2023
- Full Text
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3. Investigations into best cost battery-supercapacitor hybrid energy storage system for a utility scale PV array
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Roy, Pranoy Kumar Singha, Karayaka, H. Bora, Yan, Yanjun, and Alqudah, Yazan
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- 2019
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4. A rule-based phase control methodology for a slider-crank wave energy converter power take-off system
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Sang, Yuanrui, Karayaka, H. Bora, Yan, Yanjun, Zhang, James Z., Bogucki, Darek, and Yu, Yi-Hsiang
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- 2017
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5. Positive irrational beliefs are associated with hypomanic personality
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Alexandru I. Tiba, Simona Trip, Carmen H. Bora, Marius Drugas, Feliciana Borz, Daiana C. Miclăuş, Laura Voss, Sorin C. Iova, and Simona Pop
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General Psychology - Abstract
Primary irrational beliefs, such as demanding about attaining personal goals, are a common trans-diagnostic factor involved in many emotional disorders. Although Bipolar Disorder (BPD) is a severe emotional disorder, little is known about the role of primary irrational beliefs in the risk of BPD. Given that the risk for mania is related to responses to positive rather than adverse events, we developed a measure of irrational beliefs in response to cues of positive events. This is the first study that examines the relationship between positive primary irrational beliefs and the risk of BPD. 119 participants completed an online survey including measures for the risk of BPD, irrational beliefs, positive irrational beliefs, mania-related cognitions, and mood measures (depressive and manic mood). Results revealed significant associations between the risk of BPD and positive primary irrational beliefs, irrational beliefs, positive generalization, and mood. Regression analyses revealed that positive primary irrational beliefs, such as demanding to attain significant goals in response to cues for positive events, uniquely predict the risk for BPD independently of mood, mania-related cognitions and irrational beliefs. These findings encourage the treatment approaches focused on restructuring primary irrational beliefs in response to positive situations to reduce the risk of BPD.
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- 2023
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6. Effects of oregano and garlic essential oils on performance, carcase, organ and blood characteristics and intestinal microflora of broilers
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Kırkpınar, Figen, Ünlü, H. Bora, and Özdemir, Güven
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- 2011
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7. Synchronous generator model identification and parameter estimation from operating data
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Karayaka, H. Bora, Keyhani, Ali, Heydt, Gerald Thomas, Agrawal, Baj L., and Selin, Douglas A.
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Machine theory -- Models ,Steam-turbines -- Design and construction ,Business ,Electronics ,Electronics and electrical industries - Abstract
A novel technique to estimate and model parameters of a 460-MVA large steam turbine generator from operating data is presented. First, data from small excitation disturbances are used to estimate linear model armature circuit and field winding parameters of the machine. Subsequently, for each set of steady state operating data, saturable inductances [L.sub.ds] and [L.sub.qs] are identified and modeled using nonlinear mapping functions-based estimators. Using the estimates of the armature circuit parameters, for each set of disturbance data collected at different operating conditions, the rotor body parameters of the generator are estimated using an output error method (OEM). The developed nonlinear models are validated with measurements not used in the estimation procedure. Index Terms--Armature circuit and rotor body parameters, large utility generators, parameter identification.
- Published
- 2003
8. Lipopolysaccharide-induced-neuroinflammation increases intracellular accumulation of amyloid precursor protein and amyloid β peptide in APPswe transgenic mice
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Donald L. Price, Jin G. Sheng, David R. Borchelt, Susan H. Bora, Guilian Xu, and Vassilis E. Koliatsos
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Intracellular Fluid ,Lipopolysaccharides ,Genetically modified mouse ,LPS ,APP processing ,Amyloid beta ,Mice, Transgenic ,lcsh:RC321-571 ,Amyloid beta-Protein Precursor ,Mice ,Neuroinflammation ,Alzheimer Disease ,mental disorders ,Extracellular ,medicine ,Amyloid precursor protein ,Animals ,Transgenic mice ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,Mice, Inbred C3H ,Amyloid beta-Peptides ,Microglia ,biology ,Chemistry ,P3 peptide ,Molecular biology ,Peptide Fragments ,Mice, Inbred C57BL ,medicine.anatomical_structure ,Neurology ,Immunology ,biology.protein ,Encephalitis ,Alzheimer’s disease ,Intracellular - Abstract
The present study was designed to examine whether brain inflammation caused by systemic administration of lipopolysaccharides (LPS) alters the expression/processing of amyloid precursor protein (APP) and increases the generation of amyloid beta peptide (Abeta). APPswe transgenic (Tg) mice were treated with either LPS or phosphate-buffered saline (PBS). In LPS-treated APPswe mice, Abeta1-40/42 was 3-fold and APP was 1.8-fold higher than those in PBS-treated mice (P < 0.05) by ELISA, Western blots and immunoprecipitation-mass spectrometry (IP-MS) ProteinChip analysis. Numbers of Abeta- and APP-immunoreactive neurons (Abeta(+) and APP(+) neurons) increased significantly in LPS-treated APPswe mice; APP(+) and Abeta(+) neurons in neocortex were associated with an increased number of F4/80-immunoreactive microglia (F4/80(+) microglia) in their anatomical environment. Our findings demonstrate that experimental neuroinflammation increases APP expression/processing and causes intracellular accumulation of Abeta. It remains to be seen whether such events can cause neuronal dysfunction/degeneration and, with time, lead to extracellular Abeta deposits, as they occur in Alzheimer's disease.
- Published
- 2003
9. Bilateral renal artery stenosis after abdominal radiotherapy for Hodgkin's disease
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D Unsal and H Bora
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General Medicine - Published
- 2003
10. A filterbank method to determine ocean wave frequency.
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Bailey, Kyle M., Tay, Peter C., and Karayaka, H. Bora
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- 2016
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11. Solar farm hourly dispatching using super-capacitor and battery system.
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Chaires, Jordan, Karayaka, H. Bora, Yanjun Yan, and Gardner, Patrick
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- 2016
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12. Brain-derived neurotrophic factor-deficient mice develop aggressiveness and hyperphagia in conjunction with brain serotonergic abnormalities
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George A. Ricaurte, Cornelia Wihler, W. Ernest Lyons, Susan W. Reid, Vincenzo Coppola, Laura A. Mamounas, Susan H. Bora, Lino Tessarollo, and Vassilis E. Koliatsos
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Male ,medicine.medical_specialty ,Heterozygote ,Serotonin ,Serotonin reuptake inhibitor ,Hippocampus ,Biology ,Hyperphagia ,Serotonergic ,Mice ,Dexfenfluramine ,Neurotrophic factors ,Internal medicine ,medicine ,Animals ,Brain-derived neurotrophic factor ,Multidisciplinary ,Behavior, Animal ,Brain-Derived Neurotrophic Factor ,Brain ,Biological Sciences ,Mice, Mutant Strains ,Aggression ,Endocrinology ,nervous system ,Forebrain ,Female ,Proto-Oncogene Proteins c-fos ,medicine.drug - Abstract
Brain-derived neurotrophic factor (BDNF) has trophic effects on serotonergic (5-HT) neurons in the central nervous system. However, the role of endogenous BDNF in the development and function of these neurons has not been established in vivo because of the early postnatal lethality of BDNF null mice. In the present study, we use heterozygous BDNF +/− mice that have a normal life span and show that these animals develop enhanced intermale aggressiveness and hyperphagia accompanied by significant weight gain in early adulthood; these behavioral abnormalities are known to correlate with 5-HT dysfunction. Forebrain 5-HT levels and fiber density in BDNF +/− mice are normal at an early age but undergo premature age-associated decrements. However, young adult BDNF +/− mice show a blunted c-fos induction by the specific serotonin releaser-uptake inhibitor dexfenfluramine and alterations in the expression of several 5-HT receptors in the cortex, hippocampus, and hypothalamus. The heightened aggressiveness can be ameliorated by the selective serotonin reuptake inhibitor fluoxetine. Our results indicate that endogenous BDNF is critical for the normal development and function of central 5-HT neurons and for the elaboration of behaviors that depend on these nerve cells. Therefore, BDNF +/− mice may provide a useful model to study human psychiatric disorders attributed to dysfunction of serotonergic neurons.
- Published
- 1999
13. Play safe with safety pins
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R. Sinha, S. K. Basu, H. Bora, and S. N. Bandyopadhyay
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medicine.medical_specialty ,Pathology ,business.industry ,General surgery ,medicine.disease ,Foreign Body ,Otorhinolaryngology ,Aerodigestive Tract ,Main Bronchus ,Head and neck surgery ,Medicine ,Surgery ,Cricoid pressure ,Foreign body ,business ,Paediatric care - Abstract
Three cases of Safety pins in the aerodigestive tract have been presented here with a brief review of litereture.
- Published
- 1999
14. Irregular wave energy extraction analysis for a slider crank WEC power take-off system.
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Sang, Yuanrui, Karayaka, H. Bora, Yan, Yanjun, Zhang, James Z., and Muljadi, Eduard
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- 2015
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15. An Investigation of Parametric Load Leveling Control Methodologies for Resistive Heaters in Smart Grids.
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Holland, Lee, Karayaka, H. Bora, Tanaka, Martin L., and Ball, Aaron
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- 2014
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16. Resonance control strategy for a slider crank WEC power take-off system.
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Sang, Yuanrui, Karayaka, H. Bora, Yan, Yanjun, and Zhang, James Z.
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- 2014
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17. Development principles and production of paired PbS quantum dots.
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D. Mohanta, H. Bora, N. Dutta, and A. Choudhury
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We report for the first time, to the best of our knowledge, an inexpensive fabrication procedure for obtaining perfectly coupled PbS quantum dots. Evidence of quantum dot pairing (each, 10?12?nm) was confirmed by transmission electron microscopy, and the stability with aging was checked by dark-current measurements. The method of encapsulating PbS quantum dots in a nontoxic cis-trans polymer is simple, convenient and attractive for reproducible reasons. Such coupled quantum dots are promising to act as qubits which are vital in quantum computers and qubit architecture. [ABSTRACT FROM AUTHOR]
- Published
- 2008
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18. Neural Network Based Modeling of a Large Steam Turbine-Generator Rotor Body Parameters From...
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Karayaka, H. Bora, Keyhani, Ali, Heydt, Gerald Thomas, Agrawal, Baj L., and Selin, Douglas A.
- Subjects
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ELECTRIC machinery rotors , *STEAM-turbines , *STEAM generators , *ARTIFICIAL neural networks - Abstract
Presents a technique to estimate and model rotor-body parameters of large steam turbine-generator from real time disturbance data. Use of artificial neural network based estimators to model the nonlinearities in the estimated parameters; Validation of the performance of estimated parameters.
- Published
- 2001
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19. Identification of Armature, Field, and Saturated Parameters of a Large Steam Turbine-Generator...
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Karayaka, H. Bora and Keyhani, Ali
- Subjects
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PARAMETER estimation , *ARMATURES , *TURBOGENERATOR dynamics , *ELECTRIC generators , *ELECTRIC windings , *METHODOLOGY - Abstract
Presents a step by step identification procedure of armature, field, and saturated parameters of a large steam turbine-generator from real time operating data. Machine model description; Problem formulation; Estimation of field winding and D-Axis damper winding parameters.
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- 2000
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20. Memory properties of the forward premium: A study on South African exchange rates
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H. Boraine and P. J. van Staden
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Management. Industrial management ,HD28-70 ,Business ,HF5001-6182 ,Economics as a science ,HB71-74 - Abstract
The forward rate unbiasedness hypothesis states that the current forward rate should be an unbiased forecaster of the future spot rate. Inference has always been done under the assumption that the forward premium is a stationary short memory series. Recent empirical results have indicated that this assumption is not valid. Standard unit root tests performed on the forward premium often indicate infinite long memory. However, in recent literature fractionally integrated models have been applied for the forward premium. Empirical analysis is usually performed on exchange rates of developed economies. In this article, the South African Rand-Dollar exchange rate is considered and the focus is therefore on a developing country. A bootstrap method for determining standard errors and confidence limits is described and implemented.
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- 2002
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21. EP-1031: Outcomes and prognostic features of patients with head and neck adenoid cystic carcinoma who received irradiation
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P. Erpolat, M. Akmansu, H. Bora, and O. Yazici
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medicine.medical_specialty ,Oncology ,Adenoid cystic carcinoma ,business.industry ,Radiology Nuclear Medicine and imaging ,medicine ,Radiology, Nuclear Medicine and imaging ,Radiology ,Hematology ,medicine.disease ,Head and neck ,business - Full Text
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22. Distribution-free approach to the evaluation of reliability of complex systems
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V.S.S. Yadavalli, N. Signh, and H. Boraine
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General Works - Abstract
In the industrial community it is well known that the failure rate of the manufactured units vary with time due to a variety of causes, namely, engineering design, manufacturing process, maintenance and quality inspection procedures and various assignable and non-assignable factors. Such failure rates invariably exhibit changes in both level and slope and at times exhibit periodic patterns as well. Therefore it would be quite inappropriate and erroneous to analyze such stochastic series of observations using the usual failure distribution approach. Since such data can be construed as time series, we suggest in this paper the time series techniques including the Kalman filter for their analysis. Other advantages of using the latter techniques are that the periodicities, if any, can be taken into account and short-term forecasts can be made which otherwise would not have been possible.
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- 2014
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23. Microtomographic Analysis of Impact Damage in FRP Composite Laminates: A Comparative Study
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M. Alemi-Ardakani, A. S. Milani, S. Yannacopoulos, L. Bichler, D. Trudel-Boucher, G. Shokouhi, and H. Borazghi
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Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
With the advancement of testing tools, the ability to characterize mechanical properties of fiber reinforced polymer (FRP) composites under extreme loading scenarios has allowed designers to use these materials in high-level applications more confidently. Conventionally, impact characterization of composite materials is studied via nondestructive techniques such as ultrasonic C-scanning, infrared thermography, X-ray, and acoustography. None of these techniques, however, enable 3D microscale visualization of the damage at different layers of composite laminates. In this paper, a 3D microtomographic technique has been employed to visualize and compare impact damage modes in a set of thermoplastic laminates. The test samples were made of commingled polypropylene (PP) and glass fibers with two different architectures, including the plain woven and unidirectional. Impact testing using a drop-weight tower, followed by postimpact four-point flexural testing and nondestructive tomographic analysis demonstrated a close relationship between the type of fibre architecture and the induced impact damage mechanisms and their extensions.
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- 2013
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24. ELECTRICITY LOAD FORECASTING WITH ARTIFICIAL NEURAL NETWORKS
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H. Boraine and V.S.S. Yadavalli
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Industrial engineering. Management engineering ,T55.4-60.8 - Abstract
ENGLISH ABSTRACT: Artificial neural networks are powerful tools for time series forecasting. The problem addressed in this article is to do multi-step prediction of a stationary time series, and to find the associated prediction limits. Artificial neural network models for time series are non-linear. However, results that are applicable to linear models are sometimes mistakenly applied to non-linear models. One example where this is observed is in multi-step forecasting. A bootstrap method is proposed to calculate one- and multi-step predictions and prediction limits. The results are applied to an electricity load time series as well as to a pure autoregressive time series.AFRIKAANSE OPSOMMING: Kunsmatige neurale netwerke is kragtige instrumente vir tydreeksvoorspelling. In hierdie artikel word multistap-vooruitberaming van ‘n stasionêre tydreeks en die gepaardgaande vertroueinterval behandel. Resultate wat slegs geldig is vir lineêre modelle word soms verkeerdelik op neurale netwerkmodelle toegepas. ‘n Voorbeeld hiervan kom in multistap-voorspelling voor. ‘n Skoenlusmetode, word voorgestel waarvolgens eenstap- en multistap- voorspellings en vertroueintervalle bereken kan word. Die resultate word op ‘n elektrisiteitslastydreeks en op ‘n suiwer outoregressiewe tydreeks toegepas.
- Published
- 2012
25. Lipopolysaccharide-induced-neuroinflammation increases intracellular accumulation of amyloid precursor protein and amyloid β peptide in APPswe transgenic mice
- Author
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Jin G Sheng, Susan H Bora, G Xu, David R Borchelt, Donald L Price, and Vassilis E Koliatsos
- Subjects
Alzheimer’s disease ,Transgenic mice ,LPS ,Neuroinflammation ,Microglia ,APP processing ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The present study was designed to examine whether brain inflammation caused by systemic administration of lipopolysaccharides (LPS) alters the expression/processing of amyloid precursor protein (APP) and increases the generation of amyloid β peptide (Aβ). APPswe transgenic (Tg) mice were treated with either LPS or phosphate-buffered saline (PBS). In LPS-treated APPswe mice, Aβ1–40/42 was 3-fold and APP was 1.8-fold higher than those in PBS-treated mice (P < 0.05) by ELISA, Western blots and immunoprecipitation–mass spectrometry (IP–MS) ProteinChip analysis. Numbers of Aβ- and APP-immunoreactive neurons (Aβ(+) and APP(+) neurons) increased significantly in LPS-treated APPswe mice; APP(+) and Aβ(+) neurons in neocortex were associated with an increased number of F4/80-immunoreactive microglia (F4/80(+) microglia) in their anatomical environment. Our findings demonstrate that experimental neuroinflammation increases APP expression/processing and causes intracellular accumulation of Aβ. It remains to be seen whether such events can cause neuronal dysfunction/degeneration and, with time, lead to extracellular Aβ deposits, as they occur in Alzheimer’s disease.
- Published
- 2003
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26. A rare presentation of bone cement implantation syndrome as hypertensive anaphylaxis: A diagnostic and management dilemma.
- Author
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Neeradi VK, Aluka SKR, Katroth C, Bora H, Sultana T, and Maremanda KR
- Abstract
Background: Bone cement implantation syndrome characteristically involves acute alterations in the function of respiratory and cardiovascular systems. We present a case report of cement reaction with unusual presentation, that is, hypoxia, hypertension and tachycardia. A 74-year-old hypertensive male on regular medications sustained a slip and fall, presented with a right intertrochanteric neck of femur fracture, now posted for cemented hemiarthroplasty. Intraoperatively, after applying bone cement, the patient developed sweating, dyspnoea, bilateral wheezing and tachypnoea and desaturation of up to 80%-84%. Respiratory symptoms were associated with tachycardia (140-160 bpm) and hypertension (220/110 mm Hg). The surgeon was alerted about the event, the patient was reassured, and respiration was assisted with positive pressure ventilation with supplementation of 100% oxygen., Discussion: Several mechanisms have been proposed, such as the toxic effect of systemically absorbed methyl methacrylate, exothermic reaction, fat and marrow embolism, high marrow pressure during cementing and anaphylactic reaction. The administration of adrenaline, which can worsen the clinical picture, is the mainstay in managing anaphylaxis., Conclusion: The association of hypertension and tachycardia with bone cement implantation syndrome, previously not reported, can have distinct pathomechanisms and cause a diagnostic and management dilemma., Competing Interests: Declaration of conflicting interestsThe author(s) declared no potential conflicts of interest with respect to the research, authorship and/or publication of this article.
- Published
- 2024
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27. A propensity score-matched comparison of neoadjuvant chemoradiotherapy with cisplatin-5FU and carboplatin-paclitaxel in locally advanced esophageal squamous cell carcinoma: A Turkish oncology group study.
- Author
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Gürler F, Tay F, Sucuoğlu İşleyen Z, Yerlikaya T, Hendem E, Esen SA, Sütçüoğlu O, Işık D, Niğdelioğlu B, Özen M, Şahin E, Şakalar T, Şengül Samancı N, Alan Ö, Hacıbekiroğlu İ, Algın E, Yılmaz MK, Türk HM, Öksüzoğlu B, Yavuz A, Yüksel O, Bora H, Yazıcı O, Özet A, and Özdemir N
- Subjects
- Humans, Male, Female, Middle Aged, Retrospective Studies, Aged, Turkey, Chemoradiotherapy methods, Chemoradiotherapy adverse effects, Adult, Propensity Score, Carboplatin administration & dosage, Cisplatin administration & dosage, Cisplatin therapeutic use, Cisplatin adverse effects, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Antineoplastic Combined Chemotherapy Protocols adverse effects, Neoadjuvant Therapy methods, Paclitaxel administration & dosage, Paclitaxel adverse effects, Paclitaxel therapeutic use, Fluorouracil administration & dosage, Fluorouracil adverse effects, Fluorouracil therapeutic use, Esophageal Squamous Cell Carcinoma therapy, Esophageal Squamous Cell Carcinoma mortality, Esophageal Squamous Cell Carcinoma pathology, Esophageal Neoplasms therapy, Esophageal Neoplasms pathology, Esophageal Neoplasms mortality
- Abstract
Background: Neoadjuvant treatment is the standard treatment in locally advanced ESCC. However, the optimal chemotherapy regimen is not known., Method: This is a retrospective observational cohort study conducted with propensity score matching. Patients with resectable ESCC from 13 tertiary centers from Türkiye were screened between January 2011 and December 2021. We compared the efficacy and safety of neoadjuvant chemoradiotherapy with the CF and the CROSS regimens in patients with ESCC., Results: Three hundred and sixty-two patients were screened. Patients who received induction chemotherapy (n = 72) and CROSS-ineligible (n = 31) were excluded. Two hundred and fifty nine patients received neoadjuvant chemoradiotherapy. After propensity score matching (n = 97 in both groups), the mPFS was 18.4 months (95% CI, 9.3-27.4) and 25.7 months (95% CI, 15.6-35.7; p = 0.974), and the mOS was 35.2 months (95% CI, 18.9-51.5) and 39.6 months (95% CI 20.1-59.2; p = 0.534), in the CF and the CROSS groups, respectively. There was no difference between subgroups regarding PFS and OS. Compared with the CF group, the CROSS group had a higher incidence of neutropenia (34.0% vs. 62.9%, p < 0.001) and anemia (54.6% vs. 75.3%, p = 0.003) in all grades. On the other hand, there was no significant difference in grade 3-4 anemia, grade 3-4 neutropenia, and febrile neutropenia between groups. There were more dose reductions and dose delays in the CROSS group than in the CF group (11.3% vs. 3.1%, p = 0.026 and 34.0% vs. 17.5%, p = 0.009, respectively). The resection rate was 52.6% in the CF-RT and 35.1% in the CROSS groups (p = 0.014)., Conclusion: Favorable PFS and pCR rates and a comparable OS were obtained with the CROSS regimen over the CF regimen as neoadjuvant chemoradiotherapy in patients with ESCC., (© 2024 The Author(s). Cancer Medicine published by John Wiley & Sons Ltd.)
- Published
- 2024
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28. Thermoresponsive keratin-methylcellulose self-healing injectable hydrogel accelerating full-thickness wound healing by promoting rapid epithelialization.
- Author
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Dixit K, Bora H, Chakrabarti R, Saha B, Dogra N, Biswas S, Sengupta TK, Kaushal M, Rana S, Mukherjee G, and Dhara S
- Subjects
- Rats, Animals, Humans, Hydrogels pharmacology, Methylcellulose, Rats, Wistar, Wound Healing, Re-Epithelialization, Keratins pharmacology
- Abstract
Chronic wounds suffer from impaired healing due to microbial attack and poor vascular growth. Thermoresponsive hydrogels gained attention in wound dressing owing to their gelation at physiological temperature enabling them to take the shape of asymmetric wounds. The present study delineates the development of thermoresponsive hydrogel (MCK), from hair-derived keratin (K) and methylcellulose (MC) in the presence of sodium sulfate. The gelation temperature (T
g ) of this hydrogel is in the range of 30 °C to 33 °C. Protein-polymer interaction leading to thermoreversible sol-gel transition involved in MCK blends has been analyzed and confirmed by FTIR, XRD, and thermal studies. Keratin, has introduced antioxidant properties to the hydrogel imparted cytocompatibility towards human dermal fibroblasts (HDFs) as evidenced by both MTT and live dead assays. In vitro wound healing assessment has been shown by enhanced migration of HDFs in the presence of MCK hydrogel compared to the control. Also, CAM assay and CD31 expression by the Wistar rat model has shown increased blood vessel branching after the implantation of MCK hydrogel. Further, in vivo study, demonstrated MCK efficacy of hydrogel in accelerating full-thickness wounds with minimal scarring in Wistar rats, re-epithelialization, and reinstatement of the epidermal-dermal junction thereby exhibiting clinical relevance for chronic wounds., Competing Interests: Declaration of competing interest There are no conflicts to declare., (Copyright © 2024 Elsevier B.V. All rights reserved.)- Published
- 2024
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29. Evaluation of therapeutic use of a combination of pentoxifylline and vitamin E in radiation-induced renal fibrosis.
- Author
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Demircan V, Guzel C, Sarıbas GS, Dinc SC, Cetin S, Gulbahar O, Erpolat P, Elmas C, and Bora H
- Subjects
- Rats, Humans, Animals, Vitamin E pharmacology, Vitamin E therapeutic use, Antioxidants pharmacology, Kidney pathology, Fibrosis, Pentoxifylline pharmacology, Pentoxifylline therapeutic use
- Abstract
Radiation-induced renal fibrosis (RIRF) is a progressive, irreversible condition causing chronic kidney disease. Pentoxifylline (PTX) and vitamin E may mitigate radiation-induced damage and fibrosis. This study assesses their effectiveness. We used four groups, each with six rats: radiation therapy alone (RT-only), radiation therapy plus drug treatment (RT + drug), drug treatment alone (drug-only), and a control group. Rats were monitored for three months, with weight measurements every four weeks. Afterward, rats were analyzed biochemically and histologically, with blood and tissue samples taken for statistical comparison. No significant differences in serum creatinine levels and body weight were observed. RT-only group had more severe kidney tubule effects. Histomorphological, immunohistochemical, and TUNEL analyses showed significant RIRF mitigation in the RT + drug group. Our study highlighted molecular pathways (SMAD, TGF-beta, VEGF) and histological markers (collagens, a-SMA, fibronectin, metalloproteinases) associated with RIRF. PTX and vitamin E reduced ionizing radiation's impact on renal cells and mitigated radiation-induced kidney fibrosis. Further human studies are needed to confirm these findings., (© 2024. The Author(s).)
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- 2024
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30. Enhanced toughness and strength of 3D printed carbide-oxide composite for biomedical applications.
- Author
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Das M, Dixit A, Jana A, Karthik R, Sreeram PR, Bora H, Dhara S, Panda SK, and Tiwary CS
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- Humans, Materials Testing, Porosity, Printing, Three-Dimensional, Ceramics, Oxides, Prostheses and Implants
- Abstract
Natural materials derived/extracted Ceramics is an excellent material for developing ceramic-based orthopedic implants. Recently, we have demonstrated an easily scalable, energy-efficient green method to extract ceramic particles from bio-waste i.e. chicken bone. Though the chicken bone extract (CBE) has good biocompatibility, it lacks good mechanical properties in the 3D printed condition as that of human bones. Here, we have reinforced CBE with different weight proportions of silicon carbide to improve the mechanical characteristics of the composite. The hybrid of CBE (oxide) and carbide (SiC) is sintered at different temperatures to understand the effect of the interface of the two ceramics. It is observed that temperature has minimal effect and composition has a noticeable effect on mechanical strength as well as bio-toxicity. The toughness (∼3.58 MJ/m
3 ) and compressive strength (∼64.64 MPa) of the 90:10 composition sintered at 1250 °C show the maximum optimum values. A mathematical model has also been developed to predict and correlate the toughness with porosity, volumetric loading, and elastic modulus of the 3D-printed ceramic composite., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)- Published
- 2024
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31. Bioactive self-assembling silk fibroin-sericin films for skin tissue engineering.
- Author
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Byram PK, Mukherjee M, Rahaman M, Bora H, Kaushal M, Dhara S, and Chakravorty N
- Subjects
- Tissue Engineering, Biocompatible Materials chemistry, Anti-Bacterial Agents, Sericins chemistry, Fibroins chemistry
- Abstract
The quest for an ideal wound dressing material has been a strong motivation for researchers to explore novel biomaterials for this purpose. Such explorations have led to the extensive use of silk fibroin (SF) as a suitable polymer for several applications over the years. Unfortunately, another major silk protein-sericin has not received its due attention yet in spite of having favorable biological properties. In this study, we report an approach of blending SF and silk sericin (SS) without the usage of chemical crosslinkers is made possible by the usage of formic acid which evaporates to induce β -sheets formation to form cytocompatible films. Raman spectroscopy confirms the presence of SF/SS components in blend and formation of β -sheet in films. In situ , gelation kinetics studies were conducted to understand the change in gelation properties with addition of sericin into SF. Methyl thiazolyl tetrazolium and live/dead assays were performed to study cellular attachment, viability and proliferation on SF/SS films. The antibacterial properties of SF/SS films were tested using Gram-negative and Gram-positive bacteria. The re-structured SF/SS films were stable, transparent, show good mechanical properties, antibacterial activity and cytocompatibility, therefore can serve as suitable biomaterial candidates for skin regeneration applications., (© 2024 IOP Publishing Ltd.)
- Published
- 2024
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32. Capra cartilage-derived peptide delivery via carbon nano-dots for cartilage regeneration.
- Author
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Maity PP, Kapat K, Poddar P, Bora H, Das CK, Das P, Ganguly S, Das NC, Dhara D, Mandal M, Roy Chowdhury A, Mukherjee S, and Dhara S
- Abstract
Targeted delivery of site-specific therapeutic agents is an effective strategy for osteoarthritis treatment. The lack of blood vessels in cartilage makes it difficult to deliver therapeutic agents like peptides to the defect area. Therefore, nucleus-targeting zwitterionic carbon nano-dots (CDs) have immense potential as a delivery vehicle for effective peptide delivery to the cytoplasm as well as nucleus. In the present study, nucleus-targeting zwitterionic CDs have been synthesized as delivery vehicle for peptides while also working as nano-agents towards optical monitoring of cartilage healing. The functional groups of zwitterion CDs were introduced by a single-step microwave assisted oxidation procedure followed by COL II peptide conjugation derived from Capra auricular cartilage through NHS/EDC coupling. The peptide-conjugated CDs (PCDs) allows cytoplasmic uptake within a short period of time (∼30 m) followed by translocation to nucleus after ∼24 h. Moreover, multicolor fluorescence of PCDs improves (blue, green, and read channel) its sensitivity as an optical code providing a compelling solution towards enhanced non-invasive tracking system with multifunctional properties. The PCDs-based delivery system developed in this study has exhibited superior ability to induce ex-vivo chondrogenic differentiation of ADMSCs as compared to bare CDs. For assessment of cartilage regeneration potential, pluronic F-127 based PCDs hydrogel was injected to rabbit auricular cartilage defects and potential healing was observed after 60 days. Therefore, the results confirm that PCDs could be an ideal alternate for multimodal therapeutic agents., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Maity, Kapat, Poddar, Bora, Das, Das, Ganguly, Das, Dhara, Mandal, Roy Chowdhury, Mukherjee and Dhara.)
- Published
- 2023
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33. Investigating the Link Between Low Back Ache, Abdominal Discomfort and Oliguria: A Unique Case of Histopathology-Proven Retroperitoneal Fibrosis.
- Author
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Vijayan J, Bora H, Ali A, and K R D
- Abstract
Retroperitoneal fibrosis (RPF) is a rare condition characterized by systemic inflammation and the proliferation of fibroinflammatory tissues in the retroperitoneum. It may lead to the formation of a retroperitoneal mass and can encase the aorta, its branches and ureters. The pathogenesis of RPF is not fully known. We report a case of a 52-year-old male presented with low back ache, flank pain, swelling of legs, oliguria and features of obstructive uropathy, later diagnosed to be RPF. The mainstay of diagnosis includes blood workup, imaging and biopsy. The first line of treatment is corticosteroids. Surgical intervention is carried out when medical measures have failed or when contraindicated. Early diagnosis and prevention of complications is the key, and a high degree of suspicion is needed., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2023, Vijayan et al.)
- Published
- 2023
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34. Biomaterial mediated immunomodulation: An interplay of material environment interaction for ameliorating wound regeneration.
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Dixit K, Bora H, Lakshmi Parimi J, Mukherjee G, and Dhara S
- Subjects
- Animals, Mice, Humans, Macrophages metabolism, Wound Healing, Cytokines metabolism, Immunomodulation, Biocompatible Materials metabolism, Gene-Environment Interaction
- Abstract
Chronic wounds are the outcome of an imbalanced inflammatory response caused by sustenance of immune microenvironment. In this context, tissue engineered graft played great role in healing wounds but faced difficulty in scar remodelling, immune rejection and poor vascularization. All the limitations faced are somewhere linked with the immune cells involved in healing. In this consideration, immunomodulatory biomaterials bridge a large gap with the delivery of modulating factors for triggering key inflammatory cells responsible towards interplay in the wound micro-environment. Inherent physico-chemical properties of biomaterials substantially determine the nature of cell-materials interaction thereby facilitating differential cytokine gradient involved in activation or suppression of inflammatory signalling pathways, and followed by surface marker expression. This review aims to systematically describe the interplay of immune cells involved in different phases in the wound microenvironment and biomaterials. Additionally, it also focuses on modulating innate immune cell responses in the context of triggering the halted phase of the wound healing, i.e., inflammatory phase. The various strategies are highlighted for modulation of wound microenvironment towards wound regeneration including stem cells, cytokines, growth factors, vitamins, and anti-inflammatory agents to induce interactive ability of biomaterials with immune cells. The last section focuses on prospective approaches and current potential strategies for wound regeneration. This includes the development of different models to bridge the gap between mouse models and human patients. Emerging new tools to study inflammatory response owing to biomaterials and novel strategies for modulation of monocyte and macrophage behaviour in the wound environment are also discussed.
- Published
- 2023
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35. The Assessment of Clinical Outcomes and Prognostic Factors in Glioblastoma Patients.
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Demircan NV, Erpolat OP, Guzel C, Senturk E, Bora H, and Karahacioglu E
- Subjects
- Humans, Prognosis, Retrospective Studies, Antineoplastic Agents, Alkylating therapeutic use, Chemoradiotherapy methods, Neoplasm Recurrence, Local epidemiology, Temozolomide therapeutic use, Glioblastoma surgery, Glioblastoma drug therapy, Brain Neoplasms drug therapy
- Abstract
Aim: To assess the outcomes of glioblastoma patients treated in our clinic over the last 10 years using a multimodality approach and cutting-edge techniques., Material and Methods: In our study, we included 169 glioblastoma patients who were admitted to our clinic between 2009 and 2019 and received concurrent radiotherapy (RT) + temozolomide (TMZ) after surgery. Patients were collected retrospectively and analyzed using appropriate statistical methods., Results: The average follow-up period was 19 months. The average overall survival (OS) was 20.5 months. PFS and PPS were found to be 10.8 and 8.9 months, respectively. In the multivariate analysis for prognostic factors on OS, the Karnofsky Performance Score (KPS), the extent of resection (EOR), and the use of adjuvant TMZ were significant. PFS was significantly predicted by KPS, EOR, adjuvant TMZ, and planning target volume (PTV). Acute severe lymphopenia (ASL) following RT reduced the OS and PFS. There was no statistical difference in OS, PFS, recurrence patterns, or ASL incidence between the RTOG and EORTC regimens and RT techniques (IMRT vs. 3D-CRT). The association between dose-volume parameters (V3, V5, V10, V15, and V20 and V25, V30, V40, and V60 Gy) and post-treatment ASL frequency was studied. For each parameter, threshold levels were discovered. Furthermore, patients with recurrent glioblastoma who received salvage therapies had better outcomes., Conclusion: A multidisciplinary, and intensive treatment approach using modern techniques improved the OS of glioblastoma patients. Furthermore, in glioblastoma patients, larger RT fields were not associated with better outcomes. As a result, lymphocytesparing RT may be more beneficial in increasing patients' compliance to adjuvant TMZ, which is an important prognostic factor of OS.
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- 2023
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36. Subjective Global Assessment of Nutritional Status in Head and Neck Cancer Patients Treated with Radiotherapy - A Prospective Observational Study from North East India.
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Bora H, Bhattacharyya M, Kalita AK, Medhi PP, Sarma G, Nath J, Kalita M, Ingtipi D, and Sarma B
- Subjects
- Humans, Nutritional Status, Nutrition Assessment, Prospective Studies, Malnutrition diagnosis, Malnutrition etiology, Malnutrition epidemiology, Head and Neck Neoplasms radiotherapy, Head and Neck Neoplasms complications
- Abstract
Head and neck cancer (HNC) patients undergoing curative radiotherapy (RT) are at risk of malnutrition due to disease process as well as effects of therapy. Identifying the nutritional status of these patients at the earliest, helps to introduce adequate and timely interventions that can improve compliance and outcomes of treatment. Various tools for nutritional assessment in cancer patients have been proposed. In this prospective observational study we used the Subjective Global Assessment (SGA) questionnaire in a cohort of HNC patients receiving definitive RT at a regional cancer center of North East India. Recording of data was done at baseline, at two weekly intervals during treatment, at end of radiotherapy (EORT) and at follow-up upto 6 months. We observed that despite proper nutrition counseling, our patients suffered from malnutrition throughout their course of RT, which was at its peak by EORT but gradually improved over six months of follow-up. Pain on eating and swallowing were the most debilitating symptoms which caused significant decline of nutrient intake, body fat and muscle mass among patients together with deteriorating SGA ratings. Our results will hopefully help us design better strategies for nutrition management while delivering curative (chemo)radiotherapy for HNC patients of this region- which has one of the highest incidences of HNC in the world.
- Published
- 2023
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37. Exploration of Potent Antiviral Phytomedicines from Lauraceae Family Plants against SARS-CoV-2 Main Protease.
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Bora H, Kamle M, Hassan H, Al-Emam A, Chopra S, Kirtipal N, Bharadwaj S, and Kumar P
- Subjects
- Humans, SARS-CoV-2, Molecular Docking Simulation, Protease Inhibitors pharmacology, Protease Inhibitors chemistry, Molecular Dynamics Simulation, Antiviral Agents pharmacology, Antiviral Agents chemistry, COVID-19
- Abstract
A new Coronaviridae strain, Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2), emerged from Wuhan city of China and caused one of the substantial global health calamities in December 2019. Even though several vaccines and drugs have been developed worldwide since COVID-19, a cost-effective drug with the least side effects is still unavailable. Currently, plant-derived compounds are mostly preferred to develop antiviral therapeutics due to its less toxicity, easy access, and cost-effective characteristics. Therefore, in this study, 124 phytochemical compounds from plants of Lauraceae family with medicinal properties were virtually screened against SARS-CoV-2 M
pro . Identification of four phytomolecules, i.e., cassameridine, laetanine, litseferine and cassythicine, with docking scores -9.3, -8.8, -8.6, and -8.6 kcal/mol, respectively, were undertaken by virtual screening, and molecular docking. Furthermore, the molecular dynamic simulation and essential dynamics analysis have contributed in understanding the stability and inhibitory effect of these selected compounds. These phytomolecules can be considered for further in vitro and in vivo experimental study to develop anti-SARS-CoV-2 therapeutics targeting the main protease (Mpro ).- Published
- 2022
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38. High-Performance, Nitrogen-Doped, Carbon-Nanotube-Based Electrochemical Sensor For Vitamin D3 Detection.
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Bora H, Mandal D, and Chandra A
- Subjects
- Cholecalciferol, Nitrogen chemistry, Reproducibility of Results, Nanostructures, Nanotubes, Carbon chemistry
- Abstract
With the fast changing lifestyle, vitamin D deficiency is becoming extremely common. Therefore, development of economical, efficient, and fast sensors for vitamin D is the need of the hour. Carbon-based nanomaterials are extensively explored in sensing of variety of biomolecules. In the present study, an antibody-free, highly sensitive, carbon-nanotube-based, highly responsive vitamin D3 sensor is reported. Nitrogen-doped carbon nanotubes are utilized to overcome the limiting factor of hydrophobic character of pure carbon. The synthesized N-doped CNTs showed a specific surface area of 24 m
2 /g. The surface charges of vitamin D3 and the vitamin D3/NCNT complex are found to be -20 and -6.4 mV, respectively, by zeta potential measurements. The sensor is able to deliver high performance in the concentration range of 0-10 nM, with a limit of detection of 16 pM. The response study indicated the sensitivity value as 0.000495 mA/cm2 nM. The sensor is also able to show a higher selectivity toward vitamin D3 in comparison to other biomolecules. The long-term stability, reproducibility, good linear range, and ultralow detection capability of the sensor are also reported.- Published
- 2022
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39. Ochratoxins in food and feed: Occurrence and its impact on human health and management strategies.
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Kumar P, Mahato DK, Sharma B, Borah R, Haque S, Mahmud MMC, Shah AK, Rawal D, Bora H, and Bui S
- Subjects
- Animals, Aspergillus, Humans, Penicillium, Animal Feed, Dietary Exposure statistics & numerical data, Food Contamination statistics & numerical data, Food Microbiology, Ochratoxins analysis
- Abstract
Ochratoxins (OTs) are a group of mycotoxins produced by Aspergillus and Penicillium spp. which are ubiquitous. They infect the crops during pre- and post-harvest conditions and contaminate various food and feed. Among all the OTs produced, ochratoxin A (OTA) poses serious health issues like neurotoxicity and carcinogenesis. The harmful impact of the toxins is observed in both humans and animals. The toxins get accumulated in the organs of animals through the contaminated animal-feed which further contaminate the products derived from them, such as milk and meat-based products. Therefore, sensitive and robust identification, detection, and quantification methods along with efficient management and control measures are crucial. Spectrometric and spectroscopy techniques are quite sensitive and lead to better detection of the toxin in the food products. Control and preventive measures during harvesting, storage and transportation are found to be effective in managing the production of such toxins. This review insight on the occurrence, chemistry, biosynthesis, effects on human health and agriculture, detections, management, and control strategies of ochratoxins., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
- Published
- 2020
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40. Citrus Essential Oils (CEOs) and Their Applications in Food: An Overview.
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Bora H, Kamle M, Mahato DK, Tiwari P, and Kumar P
- Abstract
Citrus is a genus belonging to the Rutaceae family and includes important crops like orange, lemons, pummelos, grapefruits, limes, etc. Citrus essential oils (CEOs) consist of some major biologically active compounds like α -/ β -pinene, sabinene, β -myrcene, d -limonene, linalool, α -humulene, and α -terpineol belonging to the monoterpenes, monoterpene aldehyde/alcohol, and sesquiterpenes group, respectively. These compounds possess several health beneficial properties like antioxidant, anti-inflammatory, anticancer, etc., in addition to antimicrobial properties, which have immense potential for food applications. Therefore, this review focused on the extraction, purification, and detection methods of CEOs along with their applications for food safety, packaging, and preservation. Further, the concerns of optimum dose and safe limits, their interaction effects with various food matrices and packaging materials, and possible allergic reactions associated with the use of CEOs in food applications were briefly discussed, which needs to be addressed in future research along with efficient, affordable, and "green" extraction methods to ensure CEOs as an ecofriendly, cost-effective, and natural alternative to synthetic chemical preservatives.
- Published
- 2020
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41. Tinospora cordifolia (Giloy): Phytochemistry, Ethnopharmacology, Clinical Application and Conservation Strategies.
- Author
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Kumar P, Kamle M, Mahato DK, Bora H, Sharma B, Rasane P, and Bajpai VK
- Subjects
- Alkaloids isolation & purification, Ethnopharmacology, Glycosides isolation & purification, Humans, India, Medicine, Ayurvedic, Plant Extracts isolation & purification, Plants, Medicinal, Conservation of Natural Resources, Plant Extracts pharmacology, Tinospora chemistry, Tinospora growth & development
- Abstract
Tinospora cordifolia (Giloy) is a medicinal plant used in folk and Ayurvedic medicines throughout India since ancient times. All the parts of the plant are immensely useful due to the presence of different compounds of pharmaceutical importance belonging to various groups as alkaloids, diterpenoid lactones, glycosides, steroids, sesquiterpenoid, and phenolics. These compounds possess pharmacological properties, which make it anti-diabetic, antipyretic, anti-inflammatory, anti-oxidant, hepato-protective, and immuno-modulatory. However, due to the increasing population, there is an inadequate supply of drugs. Therefore, this review focuses on phytochemistry, ethnopharmacology, clinical application and its conservation strategies so that the plant can be conserved for future generations and utilized as alternative medicine as well as to design various pharmacologically important drugs., (Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.)
- Published
- 2020
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42. Adjuvant radiotherapy for Stage I seminoma: A Single-institutional experience.
- Author
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Kanyilmaz G, Saricanbaz I, Bora H, Karahacioglu E, and Erkal EY
- Subjects
- Adolescent, Adult, Dose Fractionation, Radiation, Follow-Up Studies, Humans, Male, Middle Aged, Neoplasm Staging, Orchiectomy, Radiotherapy Dosage, Radiotherapy, Adjuvant adverse effects, Radiotherapy, Adjuvant methods, Radiotherapy, Adjuvant statistics & numerical data, Retrospective Studies, Seminoma mortality, Seminoma pathology, Survival Rate, Testicular Neoplasms mortality, Testicular Neoplasms pathology, Testis pathology, Testis surgery, Treatment Outcome, Young Adult, Seminoma therapy, Testicular Neoplasms therapy
- Abstract
Objectives: There is no consensus regarding the management of Stage 1 seminomas following inguinal orchiectomy. In this study, we evaluated the treatment results and treatment-related toxicity for patients with Stage 1 seminomas treated with adjuvant radiotherapy (RT) at a single institution., Methods: Sixty-five patients who underwent adjuvant RT following orchiectomy for Stage 1 seminomas between January 1996 and December 2007 were retrospectively reviewed. The age, tumor location, histopathological type, stage, tumor size, RT field, and radiation dose were recorded for all patients., Results: The patients' ages ranged from 17 to 61 years (median, 37 years). Sixty-three patients (97%) were diagnosed with classical seminoma and the remaining two patients (3%) had spermatocytic seminoma. After orchiectomy, 37 patients (57%) received para-aortic RT and 28 patients (43%) received dog-leg field RT. RT was applied with 1.8-2 Gy/day fractionation and the median RT dose was 26 Gy (range, 20-38). Follow-up ranged from 0.3 to 18 years (median, 9.5 years). Local control had been achieved in all patients and all of them were alive with no evidence of disease. Fifty-one patients (77%) had at least 5 years of follow-up and 27 patients (41%) had at least 10 years of follow-up. Overall survival at 10 years was 100%., Conclusion: Although retrospective in nature, this single-institutional study provides useful information about the outcomes and toxicities associated with adjuvant RT in patients with Stage 1 seminomas reporting excellent disease control and survival rates at the expense of acceptable toxicity., Competing Interests: None
- Published
- 2019
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43. Intensity-Modulated Radiation Therapy Improves the Target Coverage Over 3-D Planning While Meeting Lung Tolerance Doses for All Patients With Malignant Pleural Mesothelioma.
- Author
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Ulger S, Cetin E, Catli S, Sarac H, Kilic D, and Bora H
- Subjects
- Female, Humans, Lung pathology, Lung Neoplasms pathology, Male, Mesothelioma pathology, Mesothelioma, Malignant, Pleural Neoplasms pathology, Radiotherapy Dosage, Radiotherapy Planning, Computer-Assisted, Radiotherapy, Intensity-Modulated adverse effects, Lung radiation effects, Lung Neoplasms radiotherapy, Mesothelioma radiotherapy, Pleural Neoplasms radiotherapy, Radiotherapy, Intensity-Modulated methods
- Abstract
Purpose: To investigate high conformality on target coverage and the ability on creating strict lung dose limitation of intensity-modulated radiation therapy in malignant pleural mesothelioma., Patients and Methods: Twenty-four radiation therapy plannings were evaluated and compared with dosimetric outcomes of conformal radiation therapy and intensity-modulated radiation therapy. Hemithoracal radiation therapy was performed on 12 patients with a fraction of 1.8 Gy to a total dose of 50.4 Gy. All organs at risk were contoured. Radiotherapy plannings were differed according to the technique; conformal radiation therapy was planned with conventionally combined photon-electron fields, and intensity-modulated radiation therapy was planned with 7 to 9 radiation beam angles optimized in inverse planning. Strict dose-volume constraints were applied., Results: Intensity-modulated radiation therapy was statistically superior in target coverage and dose homogeneity (intensity-modulated radiation therapy-planning target volume 95 mean 100%; 3-dimensional conformal radiation therapy-planning target volume 95 mean 71.29%, P = .0001; intensity-modulated radiation therapy-planning target volume 105 mean 11.14%; 3-dimensional conformal radiation therapy-planning target volume 105 mean 35.69%, P = .001). The dosimetric results of the remaining lung was below the limitations on intensity-modulated radiation therapy planning data (intensity-modulated radiation therapy-lung mean dose mean 7.5 [range: 5.6%-8.5%]; intensity-modulated radiation therapy-lung V5 mean 55.55% [range: 47%-59.9%]; intensity-modulated radiation therapy-lung V20 mean 4.5% [range: 0.5%-9.5%]; intensity-modulated radiation therapy-lung V13 mean 13.43% [range: 4.2%-22.9%])., Conclusion: With a complex and large target volume of malignant pleural mesothelioma, intensity-modulated radiation therapy has the ability to deliver efficient tumoricidal radiation dose within the safe dose limits of the remaining lung tissue.
- Published
- 2017
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44. The evaluation of the feasibility of carotid sparing intensity modulated radiation therapy technique for comprehensive breast irradiation.
- Author
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Erpolat OP, Akmansu M, Catli Dinc S, Akkan K, and Bora H
- Subjects
- Aged, Breast Neoplasms radiotherapy, Feasibility Studies, Female, Humans, Organs at Risk radiation effects, Radiation Dosage, Radiometry, Radiotherapy Planning, Computer-Assisted, Breast radiation effects, Carotid Arteries radiation effects, Organ Sparing Treatments methods, Radiotherapy, Intensity-Modulated adverse effects, Radiotherapy, Intensity-Modulated methods
- Abstract
Purpose: To investigate the feasibility of carotid sparing intensity modulated radiation therapy (CS-IMRT) to minimize the radiation dose to carotid arteries for comprehensive irradiation of breast cancer patients who have risk factors for atherosclerosis. The dose distribution of CS-IMRT technique and the conventional irradiation technique were also compared., Patients and Methods: Ten patients who were previously treated with comprehensive three-dimensional conformal radiation therapy (3DCRT) were selected. DICOM data were used to contour the carotid artery and to create the virtual CS-IMRT plans for each patient. 3DCRT and CS-IMRT plans were compared in terms of conformity index, homogeneity index, and the doses to organ at risk and carotid arteries., Results: The homogeneity and conformity indices were better with CS-IMRT plans compared to 3DCRT plan. The homogeneity index was 1.13 vs 1.11 (p=0.007) for 3DCRT and CS-IMRT and the conformity index was 0.96 vs 0.97 (p=0.006) for 3DCRT and CS-IMRT. The radiation dose to the carotid arteries were reduced by applying CS-IMRT without compromising the target volume coverage. When the carotid artery was considered as organ at risk for CS-IMRT planning, the median of V50 was decreased to 0% from 12.5% compared to 3DCRT plans (p=0.017). The median of the maximum dose to the carotid artery was decreased under 50Gy with CS-IMRT., Conclusions: CS-IMRT can significantly reduce the unnecessary radiation dose to the carotid arteries compared with conventional 3DCRT technique while maintaining target volume coverage. CS-IMRT technique can be considered for breast cancer patient with high risk of atherosclerosis., (Copyright © 2017. Published by Elsevier Ltd.)
- Published
- 2017
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45. Thyroid abnormalities in survivors of childhood cancer.
- Author
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Çağlar AA, Oğuz A, Pınarlı FG, Karadeniz C, Okur A, Bideci A, Koçak Ü, and Bora H
- Subjects
- Adolescent, Adult, Child, Dose-Response Relationship, Radiation, Female, Humans, Incidence, Male, Neoplasms epidemiology, Radiation Injuries diagnosis, Radiation Injuries physiopathology, Risk Factors, Thyroid Diseases diagnosis, Thyroid Diseases physiopathology, Thyroid Function Tests, Time Factors, Turkey, Young Adult, Antineoplastic Agents adverse effects, Chemoradiotherapy adverse effects, Neoplasms therapy, Radiation Injuries epidemiology, Survivors, Thyroid Diseases epidemiology, Thyroid Gland physiopathology
- Abstract
Objective: To investigate the late side effects of childhood cancer therapy on the thyroid gland and to determine the risk factors for development of thyroid disorder among childhood cancer survivors., Methods: One hundred and twenty relapse-free survivors of childhood cancer (aged 6-30 years) were included in this study. The diagnoses of patients were lymphoma, leukemia, brain tumor, rhabdomyosarcoma and nasopharyngeal carcinoma (NPC). The patients were divided into two groups depending on the treatment: group 1-chemotherapy (ChT) only (n=52) and group 2-combination therapy of ChT + radiotherapy (RT) (head/neck/thorax) (n=68). Thyroid function tests, urinary iodine levels, and thyroid gland ultrasound examinations were evaluated in both groups., Results: Incidence of thyroid disease was 66% (n=79) in the survivors. The thyroid abnormalities were: hypothyroidism (HT) (n=32, 27%), thyroid nodules (n=27, 22%), thyroid parenchymal heterogeneity (n=40, 33%), autoimmune thyroiditis (n=36, 30%), and thyroid malignancy (n=3, 2%). While the incidence of HT and thyroid nodules in group 2 was significantly higher than in group 1, the incidence of thyroid parenchymal heterogeneity and autoimmune thyroiditis was similar in the two patient groups. HT and thyroid malignancy were seen only in group 2. In multivariate logistic regression analysis, a history of Hodgkin lymphoma (HL), brain tumor and NPC, as well as cervical irradiation and 5000-5999 cGy doses of radiation were found to constitute risk factors for HT. History of HL and 4000-5999 cGy doses of radiation were risk factors for thyroid nodules. Head/neck irradiation and treatment with platinum derivatives were risk factors for autoimmune thyroiditis. In univariate analysis, a history of NPC, cervical + nasopharyngeal irradiation, and treatment with platinum derivatives were risk factors for thyroid parenchymal heterogeneity., Conclusion: Our results indicate that there is especially an increased risk of HT and thyroid nodules in patients treated with combination therapy of ChT with head/neck/thorax RT. Although chemotherapeutic agents per se do not seem to cause HT, longer follow-up is needed to assess whether or not there is an increased risk for autoimmune thyroiditis and thyroid parenchymal heterogeneity after antineoplastic therapy.
- Published
- 2014
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46. Role of vascular endothelial growth factor in clinically localized prostate cancer treated with radiation therapy.
- Author
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Erkal EY, Bora H, Tepeoğlu M, and Akmansu M
- Abstract
Background: Anti-vascular endothelial growth factor (Anti-VEGF) agents are a promising approach to increase the efficacy of treatment for treatment-resistant prostate cancer., Aims: To correlate vascular endothelial growth factor (VEGF) expression and outcome following radiation therapy in the treatment of clinically localized prostate cancer., Study Design: Retrospective observational study., Methods: Forty-one patients and clinically localized disease that were treated with radiation therapy were analyzed. For VEGF expression, immunoreactivity scores (IRS) were calculated using percent scores and intensity scores. Twenty-four patients were classified as having low (0 to 4 IRS) and 17 patients were classified as having high (5 to 8 IRS) VEGF expression., Results: The median age was 71 years, median follow-up was 5.4 years and median radiation therapy dose was 70 Gy. VEGF expression was calculated as low in 24 patients and high in 17 patients. Higher VEGF expression was observed in 6/26 patients with a low Gleason score versus 11/15 patients with a high Gleason score (p=0.02). Biochemical failure (BF) was observed in 2/24 patients with low VEGF expression versus 7/17 patients with high VEGF expression (p=0.01). In univariate analysis, having a higher Gleason score (p<0.01), being in the high risk group (p=0.03) and having higher VEGF expression (p=0.01) predicted BF after definitive radiation therapy. The biochemical failure-free survival rate at 5 years tended to be different (91% vs. 53%) when patients were grouped according to VEGF expression (p=0.06)., Conclusion: In attempt to define patients with clinically localized disease that are not sensitive to standard treatment modalities, cellular and/or molecular biological markers may be required.
- Published
- 2014
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47. Prognostic significance of expression of CD133 and Ki-67 in gastric cancer.
- Author
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Saricanbaz I, Karahacioglu E, Ekinci O, Bora H, Kilic D, and Akmansu M
- Subjects
- AC133 Antigen, Adenocarcinoma secondary, Adult, Aged, Aged, 80 and over, Female, Follow-Up Studies, Humans, Immunoenzyme Techniques, Lymphatic Metastasis, Male, Middle Aged, Neoplasm Grading, Neoplasm Invasiveness, Neoplasm Staging, Prognosis, Retrospective Studies, Stomach Neoplasms pathology, Adenocarcinoma metabolism, Antigens, CD metabolism, Biomarkers, Tumor metabolism, Glycoproteins metabolism, Ki-67 Antigen metabolism, Peptides metabolism, Stomach Neoplasms metabolism
- Abstract
CD133 is one of the most important stem cell markers in solid cancers and Ki-67 is a marker that reflects cell proliferation. The relationships between the expression of CD133 and Ki-67 and prognosis in gastric carcinoma are unknown and need exploring. We examined 50 gastric cancer patients retrospectively in the Radiation Oncology Department of the Faculty of Medicine, Gazi University. CD133 and Ki-67 expression was examined using immunohistochemical staining. The survival rate in patients with CD133 positive expression was significantly worse than that in the patients with negative expression (p=0.04). Expression of CD133 had a positive correlation with that of Ki-67 (r=0.350; p=0.014). Multivariate analysis revealed that the expression of CD133 was an independent prognostic factor in gastric cancer (p=0.02). Conclusion, expression of CD133 may be a useful prognostic marker in gastric cancer.
- Published
- 2014
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48. Efficacy and safety of concurrent chemoradiotherapy with cisplatin and docetaxel in patients with locally advanced nasopharyngeal cancers.
- Author
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Baykara M, Buyukberber S, Ozturk B, Coskun U, Kaplan MA, Unsal DK, Dane F, Demirci U, Bora H, and Benekli M
- Subjects
- Adolescent, Adult, Aged, Carcinoma, Squamous Cell pathology, Cisplatin administration & dosage, Cisplatin adverse effects, Disease-Free Survival, Docetaxel, Dose Fractionation, Radiation, Drug Administration Schedule, Female, Humans, Kaplan-Meier Estimate, Lymphatic Metastasis, Male, Middle Aged, Mucositis etiology, Nasopharyngeal Neoplasms pathology, Nausea etiology, Neoplasm Staging, Radiation-Sensitizing Agents administration & dosage, Radiation-Sensitizing Agents adverse effects, Retrospective Studies, Taxoids administration & dosage, Taxoids adverse effects, Treatment Outcome, Vomiting etiology, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Carcinoma, Squamous Cell therapy, Chemoradiotherapy adverse effects, Chemoradiotherapy methods, Nasopharyngeal Neoplasms therapy, Radiation-Sensitizing Agents therapeutic use
- Abstract
Aims and Background: Chemoradiation using cisplatin-based regimens has become the standard care in the treatment of nasopharyngeal cancers. The impact of taxanes as radiosensitizing agents with concurrent chemoradiation regimens is unknown. We retrospectively evaluated the efficacy and tolerability of weekly cisplatin + docetaxel combination with chemoradiation in locally advanced nasopharyngeal cancers., Methods: Forty-two patients with locally advanced nasopharyngeal cancers (59.5% stage IV, 23.3% stage III, and 16.7% stage II) were assessed retrospectively. Total radiation dose to the planning target volume of gross disease (primary and/or node) was 70 Gy/35 fractions, 5 fractions per week. Minimum doses of 60 Gy and 50 Gy were administered to planning target volume of elective high-risk and low-risk disease, respectively. Chemotherapy consisted of weekly cisplatin (20 mg/m(2)) + docetaxel (20 mg/m(2)) concurrently with radiotherapy., Results: The median age of the patients was 46.5 years (range, 17-79). Objective response rate was 86%. The 4-year progression-free survival and overall survival were 65.4% and 91.3%, respectively. The most common grade 3 and 4 toxicities were mucositis (48%), nausea (22%), neutropenia (12%), dermatitis (5%), fatigue (5%) and weight loss (5%)., Conclusions: Weekly cisplatin and docetaxel concurrent with radiotherapy for locally advanced nasopharyngeal cancers was found tolerable with a high efficacy.
- Published
- 2013
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49. Defining the erythrocyte binding domains of Plasmodium vivax tryptophan rich antigen 33.5.
- Author
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Bora H, Tyagi RK, and Sharma YD
- Subjects
- Amino Acid Sequence, Animals, Humans, Malaria, Vivax blood, Models, Molecular, Molecular Sequence Data, Peptide Fragments chemistry, Peptide Fragments metabolism, Plasmodium vivax physiology, Protein Binding, Protein Structure, Tertiary, Receptors, Cell Surface metabolism, Erythrocytes metabolism, Erythrocytes parasitology, Plasmodium vivax metabolism, Protozoan Proteins chemistry, Protozoan Proteins metabolism, Tryptophan
- Abstract
Tryptophan-rich antigens play important role in host-parasite interaction. One of the Plasmodium vivax tryptophan-rich antigens called PvTRAg33.5 had earlier been shown to be predominantly of alpha helical in nature with multidomain structure, induced immune responses in humans, binds to host erythrocytes, and its sequence is highly conserved in the parasite population. In the present study, we divided this protein into three different parts i.e. N-terminal (amino acid position 24-106), middle (amino acid position 107-192), and C-terminal region (amino acid position 185-275) and determined the erythrocyte binding activity of these fragments. This binding activity was retained by the middle and C-terminal fragments covering 107 to 275 amino acid region of the PvTRAg33.5 protein. Eight non-overlapping peptides covering this 107 to 275 amino acid region were then synthesized and tested for their erythrocyte binding activity to further define the binding domains. Only two peptides, peptide P4 (at 171-191 amino acid position) and peptide P8 (at 255-275 amino acid position), were found to contain the erythrocyte binding activity. Competition assay revealed that each peptide recognizes its own erythrocyte receptor. These two peptides were found to be located on two parallel helices at one end of the protein in the modelled structure and could be exposed on its surface to form a suitable site for protein-protein interaction. Natural antibodies present in the sera of the P. vivax exposed individuals or the polyclonal rabbit antibodies against this protein were able to inhibit the erythrocyte binding activity of PvTRAg33.5, its fragments, and these two synthetic peptides P4 and P8. Further studies on receptor-ligand interaction might lead to the development of the therapeutic reagent.
- Published
- 2013
- Full Text
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50. Presence of memory T cells and naturally acquired antibodies in Plasmodium vivax malaria-exposed individuals against a group of tryptophan-rich antigens with conserved sequences.
- Author
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Zeeshan M, Bora H, and Sharma YD
- Subjects
- Amino Acid Sequence, Amino Acid Substitution, Animals, Base Sequence, Conserved Sequence, Humans, Immunity, Cellular immunology, Immunity, Humoral immunology, Immunoglobulin G biosynthesis, India epidemiology, Interferon-gamma metabolism, Interleukin-2 metabolism, Interleukin-4 metabolism, Malaria, Vivax epidemiology, Molecular Sequence Data, Plasmodium vivax genetics, Polymorphism, Genetic, Recombinant Proteins immunology, Recombinant Proteins isolation & purification, Recombinant Proteins metabolism, Sequence Alignment, Sequence Analysis, DNA, T-Lymphocytes immunology, Th1 Cells immunology, Th2 Cells immunology, Antibodies, Protozoan biosynthesis, Antigens, Protozoan immunology, Malaria, Vivax immunology, Plasmodium vivax immunology, Tryptophan immunology
- Abstract
Background: Tryptophan-rich antigens of malarial parasites have been proposed to be the potential vaccine candidate antigens. Plasmodium vivax contains the largest number of such antigens, which need to be evaluated for their immune responses., Methods: Recombinant proteins of 15 P. vivax tryptophan-rich antigens (PvTRAgs) were expressed, purified, and used for the human humoral and cellular immune responses. Genetic polymorphism of these 15 genes was also determined among clinical P. vivax isolates., Results: The T lymphocytes of P. vivax exposed individuals expressed higher level of CD69 against all 15 PvTRAgs. These antigens also activated the large population of CD4(+) T cells and produced higher level of intracellular IL-2, INF-γ and IL-4. Although there was a mixed Th1 and Th2 response against these antigens, this response was biased toward Th2. The majority of P. vivax patients (75.7%-100%, n = 33) produced IgG antibodies against these antigens. Most of these antigens showed conserved T- and B-cell epitopes in the parasite population., Conclusions: These results suggest the presence of memory T cells in humans against these antigens to generate faster and more specific immune responses to minimize the P. vivax infection. Further characterization of these PvTRAgs may lead to the identification of a potential therapeutic target.
- Published
- 2013
- Full Text
- View/download PDF
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