7 results on '"Homrum, Eydna Í."'
Search Results
2. Using long and linked reads to improve an Atlantic herring (Clupea harengus) genome assembly
- Author
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í Kongsstovu, Sunnvør, Mikalsen, Svein-Ole, Homrum, Eydna í, Jacobsen, Jan Arge, Flicek, Paul, and Dahl, Hans Atli
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- 2019
- Full Text
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3. Working Group on International Pelagic Surveys (WGIPS)
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Auton, Urbano, Bjarnason, Sigurvin, Berg, Florian, Campanella, Fabio, Carrera, Pablo, Couperus, Bram, Gastauer, Sven, Høines, Åge S., Homrum, Eydna í, Arge Jacobsen, Jan, Johnsen, Espen, Kelly, Ruth, Krysov, Alexander I., Kvamme, Cecilie, Lusseau, Susan Maersk, Mackinson, Steven, McNeill, Gavin, Nash, Richard, Nøttestad, Leif, O'Connell, Steven, O’Donnell, Ciaran, Michael O'Malley, Michael, Salthaug, Are, Schaber, Matthias, Smith, Leon, Stenevik, Erling Kaare, Van der Kooij, Jeroen, Vatnehol, Sindre, and Wieczorek, Alina
- Subjects
SDG 14 - Life Below Water - Abstract
The core objectives of the Working Group on International Pelagic Surveys (WGIPS) are to combine and review the results of annual pelagic ecosystem surveys to provide indices for the stocks of herring, sprat, mackerel, boarfish, and blue whiting in the Northeast Atlantic, Norwegian Sea, North Sea, and Western Baltic; and to coordinate timing, coverage and methodologies for the upcoming 2022 surveys. To support this work, the group is drafting an update to the Series of ICES Survey Protocols 9 - Manual for International Pelagic Surveys (SISP9-IPS).This past year, WGIPS held a number of focal sessions including: (1) a session for presenting auxiliary monitoring of ecosystem components beyond the standard fishery survey results for the target species. This session has been held annually since 2019, with presentations this year on tests with an in-trawl stereo camera system during part of the 2021 International Ecosystem Summer Survey in the Nordic Seas (IESSNS), (2) a session on the future and development of databases used to store data from surveys in WGIPS (ICES Acoustic Database and the “PGNAPES” database), developments and use of the acoustic survey analysis software “StoX” and progress on adopting the ICES Transparent Assessment Framework (TAF) for archiving and documenting acoustic index calculations, and (3) a session on biological sampling strategies in WGIPS surveys. The group is documenting the sampling strategies used in all WGIPS surveys (on request from ICES Working group on Acoustic Trawl Data Portal Governance (WGAcousticGov) and is planning a workshop on sampling strategies in the ICES Coordinated Acoustic Survey in the Skagerrak and Kattegat, the North Sea, West of Scotland and the Malin Shelf area (HERAS).The group also reviewed progress on mesopelagic sampling with an update from the European Union Horizon 2020-programme on Ecologically and Economically Sustainable Mesopelagic Fisheries (MEESO), presentations on new net developments for the International Blue Whiting Spawning Survey (IBWSS) and experiences with using a Methot Isaac Kidd (MIK) net to target scattering layers at 150m. Lastly, WGIPS reviewed progress in using genetic stock separation methods for splitting survey results to component herring stocks and discussed ways forward to continue to develop these methods whilst maintaining the integrity of the survey indices. WGIPS encourages continued close collaboration of the survey group, assessment groups and institutes carrying out the genetic analysis work.
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- 2022
4. Seascape genetics of saithe (Pollachius virens) across the North Atlantic using single nucleotide polymorphisms
- Author
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Saha, Atal, Hauser, Lorenz, Kent, Matthew, Planque, Benjamin, Neat, Francis, Kirubakaran, Tina Graceline, Huse, Irene, Homrum, Eydna Í., Fevolden, Svein-Erik, Lien, Sigbjørn, and Johansen, Torild
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- 2015
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5. Migration of saithe (Pollachius virens) in the Northeast Atlantic
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Homrum, Eydna í, Hansen, Bogi, Jónsson, Sigurur ór, Michalsen, Kathrine, Burgos, Julian, Righton, David, Steingrund, Petur, Jakobsen, Tore, Mouritsen, Rógvi, Hátún, Hjálmar, Armannsson, Hlynur, and Joensen, Jákup Sverri
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- 2013
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6. Working Group on Widely Distributed Stocks (WGWIDE)
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Aldrin, M., Bal, Guillaume, Berge, B., Beukhof, Esther Deborah, Björnsson, H., Brunel, Thomas, Burns, Finlay, Campbell, Andrew, Campbell, Neill, Carrera, Pablo, Costas, Gersom, Dubroca, Laurent, Egan, Afra, Eliasen, S., Gonçalves, Patricia, Højnes, Åge, Homrum, Eydna í, Jacobsen, Jan Arge, Jansen, Teunis, Jensen, Gitte Høj, Krysov, Alexander, Lambert, G., Nash, Richard, Nøttestad, Leif, O´Hea , Brendan, Olafsdottir, Anna H., Orio, Alessandro, Óskarsson, Guðmundur J., Pastoors, Martin, Pronyuk, Alexander, Readdy, Lisa, Salthaug, Are, Sanchez, Sonia, Slotte, Aril, Sparrevohn, Claus Reedtz, Stenevik, Erling Kaare, Timoshenko , Nikolay, Ulleweit, Jens, Vasilye, Dmitry, Vatnehol, Sindre, Vinther, Morten, and Oskarsson, Gudmundur J.
- Abstract
The Working Group on Widely Distributed Stocks (WGWIDE) reports on the status and considerations for management of Northeast-Atlantic mackerel, blue whiting, Western and North Sea horse mackerel, Northeast-Atlantic boarfish, Norwegian spring-spawning herring, striped red mullet (Subareas 6, 8 and Divisions 7.a-c, e-k and 9.a), and red gurnard (Subareas 3, 4, 5, 6, 7, and 8) stocks. Northeast-Atlantic (NEA) Mackerel. This species is widely distributed throughout the ICES area and currently supports one of the most valuable European fisheries. Mackerel is fished by a variety of fleets from many countries (ranging from open boats using handlines on the Iberian coasts to large freezer trawlers and Refrigerated Sea Water (RSW) vessels in the Northern Area). The assessment methodology was modified during the 2019 inter-benchmark process. The 2019 WGWIDE assessment was an update of the benchmarked assessment incorporating a new year for the catch information, for all surveys (egg survey, IESSNS survey and recruitment index) and for the RFID tagging recapture. After a strong increase from the late 2000s to 2014, the SSB has been declining since 2015, but remains at high levels (well above MSY Btrigger), The estimated fishing mortality has been steadily declining since the mid-2000s, and is now estimated to be close to FMSY. This decrease of the fishing mortality, while the stock has been sustaining high catches (consistently in excess to ICES advice) is explained by a succession of good recruitments, indicating a current high productivity for this stock. Blue Whiting. This pelagic gadoid is widely distributed in the eastern part of the North Atlantic. The assessment this year followed the Stock Annex based the conclusions from the Inter-Benchmark Protocol of Blue Whiting (IBPBLW 2016). The method for calculating mean weight at age for the preliminary (2019) was however changed, such that the observed values were used. Previously, a three year average was used. Most of the annual catches are taken in the first halfyear, which makes it possible to use preliminary catches for 2019 in the assessment. This is done to reduce the effect of potential biases from the single survey used for this assessment. The SSB of the stock is large but declining since 2018. F has been reduced in recent years, but is still above FMSY. Recruitments in 2017–2019 are estimated to be low, following a period of high recruitments. Western Horse Mackerel. This species is widely distributed throughout the Northeast Atlantic: it spawns in the Bay of Biscay, and in UK and Irish waters; after spawning, parts of the stock migrate northwards into the Norwegian Sea and the North Sea. The stock is assessed using the Stock Synthesis integrated assessment model. The 2019 assessment is an update of the benchmark assessment with the inclusion of the 2018 data. According to the assessment results, the 20154-2018 recruitment estimates are the highest observed since 2008 (and higher than the geometric mean estimated over the years 1983–2018). Fishing mortality since 2012 has been decreasing overall, dropping to low values in 2015–2018 due to lower catches and a reduced proportion of fraction of the adult population in the exploited stock; it is however currently above FMSY. SSB in 2017 was estimated as the lowest in the time-series, below the limit reference point and is just above in 2018. The updated assessment shows the same trend as the previous ones, but rescales the absolute level of SSB and F over the most recent decade and, although this years’ revision is smaller, this indicates that there is still considerable uncertainty associated with it. An interbenchmark workshop occurred prior to the 2019 assessment working group: the workshop revised the biomass reference points from 911587t to 1168272t for MSYBtrigger and 0.108 to 0.074 for FMSY, hence the significant drop in adviceNorth Sea Horse Mackerel. After being benchmarked in January 2017, the CGFS and NS-IBTS survey indices were modelled with a zero-inflated model to produce a combined index. The observed trend in the last decade suggests that the stock is still at a low level in comparison with values earlier in the time-series. In 2017, the survey index showed a declining trend, and the stock remained at a low level in 2018. The result of the Length-Based Methods to estimate proxy MSY reference points for North Sea Horse Mackerel indicated that in 2018 fishing mortality was slightly above FMSY. Northeast Atlantic Boarfish. This is a small, pelagic, planktivorous, shoaling species, found at depths of 0 to 600 m. The species is widely distributed from Norway to Senegal. The directed fishery for boarfish in the NEA is a relatively new one with large catches during the early 2000s when the fishery was unregulated. Catches have reduced significantly since 2012 to the current level. Annual catch advice is provided using the data limited category 3 approach based on output from an exploratory Bayesian surplus production assessment model. The assessment model utilises catch data, an acoustic survey estimate of stock size and indices from a number of bottom-trawl surveys. The current assessment indicates that biomass peaked in 2012 at twice the historic mean before a rapid decline until 2014. Since this time the biomass level has been relatively stable. Norwegian Spring Spawning Herring. This is one of the largest herring stocks in the world. It is highly migratory and distributed throughout large parts of the NE Atlantic. This stock was benchmarked in 2016 (WKPELA). The assessment model introduced in the benchmark (XSAM), incorporates uncertainty in the input data, and has been used to provide advice after the benchmark. The SSB on 1 January 2019 is estimated by XSAM to be above Bpa (3.184 million t). The stock is declining and there is an upward revision of SSB for later years in this year’s assessment. The revision is, however, within the confidence limits of the model. Fishing mortality in 2018 is estimated to be below the management plan F that was used to give advice for 2018. A new management plan was implemented for the 2019 advisory year. Striped Red Mullet in North Sea, Bay of Biscay, Southern Celtic Seas, Atlantic Iberian Waters. This stock has been considered by WGWIDE since 2016. It is a category 5 stock without information on abundance or exploitation in relation to proxy reference points and indicators, and the evaluation is based on commercial landings. A time series of biological sampling of catches is being developed, and it may be possible to produce an analytical assessment in the near future, The advice for this stock, following the ICES precautionary approach, was given in 2017 for 2018, 2019 and 2020. Northeast-Atlantic Red Gurnard. This stock was first considered by WGWIDE in 2016, and this represents the second time the group has advised upon it. This is a category 6 stock, with large uncertainties in landings data due to poor resolution at the species level. Landings have fluctuated without trend since 2006, and discards remain significant –over 90% of catch in some cases. There remains no indication of where fishing mortality is relative to proxies and no stock indicators, and the evaluation is based on commercial landings, given the caveat that they will be incomplete. Advice for this stock is provided on the basis of the ICES precautionary approach for 2020 and 2021.
- Published
- 2019
7. Atlantic herring ( Clupea harengus ) population structure in the Northeast Atlantic Ocean.
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Kongsstovu SÍ, Mikalsen SO, Homrum EÍ, Jacobsen JA, Als TD, Gislason H, Flicek P, Nielsen EE, and Dahl HA
- Abstract
The Atlantic herring Clupea harengus L has a vast geographical distribution and a complex population structure with a few very large migratory units and many small local populations. Each population has its own spawning ground and/or time, thereby maintaining their genetic integrity. Several herring populations migrate between common feeding grounds and over-wintering areas resulting in frequent mixing of populations. Thus, many herring fisheries are based on mixed populations of different demographic status. In order to avoid over-exploitation of weak populations and to conserve biodiversity, understanding the population structure and population mixing is important for maintaining biologically sustainable herring fisheries. The aim of this study was to investigate the genetic population structure of herring in the Faroese and surrounding waters, and to develop genetic markers for distinguishing between four herring management units (often called stocks), namely the Norwegian spring-spawning herring (NSSH), Icelandic summer-spawning herring (ISSH), North Sea autumn-spawning herring (NSAH), and Faroese autumn-spawning herring (FASH). Herring from the four stocks were sequenced at low coverage, and single nucleotide polymorphisms (SNPs) were called and used for population structure analysis and individual assignment. An ancestry-informative SNP panel with 118 SNPs was developed and tested on 240 individuals. The results showed that all four stocks appeared to be genetically differentiated populations, but at lower levels of differentiation between FASH and ISSH than the other two populations. Overall assignment rate with the SNP panel was 80.7%, and agreement between the genetic and traditional visual assignment was 75.5%. The NSAH and NSSH samples had the highest assignment rate (100% and 98.3%, respectively) and highest agreement between traditional and genetic assignment methods (96.6% and 94.9%, respectively). The FASH and ISSH samples had substantially lower assignment rates (72.9% and 51.7%, respectively) and agreement between traditional and genetic methods (39.5% and 48.4%, respectively)., Competing Interests: Declaration of Competing Interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests, HAD is an employee and co-founder of Amplexa Genetics, a private clinical laboratory with a commercial interest in molecular genetics. SíK was, at the time of the study employed at Amplexa Genetics. SíK and HAD have received funding from the Faroese Pelagic Organisation who have a commercial interest in the investigated species. PF is a member of the Scientific Advisory Boards of Fabric Genomics, Inc., and Eagle Genomics, Ltd. These interests did not influence the design of the study; the collection, analysis, and interpretation of data; or the writing of the manuscript. The remaining authors declare that they have no competing interests.
- Published
- 2022
- Full Text
- View/download PDF
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