20 results on '"Jimenez AI"'
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2. Impact of probe sonication and sulfuric acid pretreatment on graphene exfoliation in water.
- Author
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Mohammedture M, Rajput N, Perez-Jimenez AI, Matouk Z, AlZadjali S, and Gutierrez M
- Abstract
Graphene is a 2D material with promising commercial applications due to its physicochemical properties. Producing high-quality graphene economically and at large scales is currently of great interest and demand. Here, the potential of producing high-quality graphene at a large scale via water-phase exfoliation methods is investigated. By altering exfoliation parameters, the production yield of graphene and flake size are evaluated. Pretreatment of the precursor graphite powder using acidic solutions of H
2 SO4 at different concentrations is found to increase further the yield and structural quality of the exfoliated graphene flakes. These findings are confirmed through various spectroscopy and surface characterization techniques. Controlling flake size, thickness, and yield are demonstrated via optimization of the sonication process, centrifuge time, and H2 SO4 pretreatment., (© 2023. The Author(s).)- Published
- 2023
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3. Reactivity of ( Z )-4-Aryliden-5(4 H )-thiazolones: [2 + 2]-Photocycloaddition, Ring-Opening Reactions, and Influence of the Lewis Acid BF 3 .
- Author
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Sierra S, Dalmau D, Higuera S, Cortés D, Crespo O, Jimenez AI, Pop A, Silvestru C, and Urriolabeitia EP
- Abstract
The irradiation of ( Z )-2-phenyl-4-aryliden-5(4 H )-thiazolones 2 with blue light (465 nm) in CH
2 Cl2 solution promotes [2 + 2]-photocycloaddition of the exocyclic C═C bonds and the formation of the dispirocyclobutanes 3 . This reaction takes place with high stereoselectivity, given that the ε-isomer (1,3 head-to-tail syn coupling) is formed in more than 90% yield in most of the cases. However, irradiation of 5(4 H )-thiazolones 2 with blue light (456 nm) in dry MeOH in the presence of BF3 ·OEt2 leads to the monospirocyclobutanes 4 with full stereoselectivity, also affording the ε-isomer. A ring-opening reaction of only one of the thiazolone rings appears to have taken place in 4 upon methanolysis, leading to the corresponding ester and thioamide groups. The treatment of free 4-aryliden-5(4 H )-thiazolones 2 with a base in alcohol (NaOR/ROH) also produces a ring-opening reaction of the heterocycle by methanolysis, although, under these reaction conditions, further intramolecular S-attack at the exocyclic C(H)═C bond and cyclization is observed, forming the dihydrothiazoles 5 or 6 as mixtures of cis ( RS / SR )- and trans ( RR / SS )-isomers with high diastereomeric excess. trans -( RR/SS )-Dihydrothiazoles 6 can be isolated as pure diastereoisomers by column chromatography. Surprisingly, dihydrothiazoles 5 can also be obtained by the treatment of 4-aryliden-5(4 H )-thiazolones 2 with BF3 ·OEt2 in methanol in the absence of a base.- Published
- 2021
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4. Play Behavior in Two Captive Bottlenose Dolphin Calves ( Tursiops Truncatus ): Ethogram, Ontogeny, and Individual Differences.
- Author
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Soriano Jimenez AI, Drago M, Vinyoles D, and Maté C
- Subjects
- Age Factors, Animals, Female, Humans, Locomotion, Male, Behavior, Animal, Bottle-Nosed Dolphin physiology, Play and Playthings, Social Behavior
- Abstract
This research focused on different aspects of play behavior including ethogram, ontogeny, and individual differences, in one male and one female captive bottlenose dolphin calves ( Tursiops truncatus ) from November 2003 to June 2004. We presented the first peer-reviewed description of a play ethogram in bottlenose dolphin calves whose behaviors were grouped into three hierarchical levels: two categories: solitary and social play; four subcategories: locomotor, object, bubble play, and in the presence of humans, and 35 entries. It was conducted in two phases: the descriptive phase - from 3 to 5 months old - with 29 entries and the quantitative phase - from 6 to 10 months old -with six entries. All social and solitary locomotor behaviors appeared when animals were 3 months old meanwhile more complex behaviors concerning playing with objects, bubbles, and in the presence of humans were observed for 6 months old. There were no statistically significant intra-individual and inter-individual differences in the play behavioral diversity, in the time invested in play and in the Shannon's evenness index. However, we observed statistically significant inter-individual but not intra-individual differences for the Shannon's diversity index.
- Published
- 2021
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5. Pd-Oxazolone complexes conjugated to an engineered enzyme: improving fluorescence and catalytic properties.
- Author
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Garcia-Sanz C, Andreu A, de Las Rivas B, Jimenez AI, Pop A, Silvestru C, Urriolabeitia EP, and Palomo JM
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- Adsorption, Catalysis, Coordination Complexes chemical synthesis, Coordination Complexes metabolism, Geobacillus enzymology, Lipase genetics, Lipase metabolism, Models, Molecular, Molecular Structure, Oxazolone metabolism, Palladium metabolism, Coordination Complexes chemistry, Fluorescence, Lipase chemistry, Oxazolone chemistry, Palladium chemistry, Protein Engineering
- Abstract
Different Pd-complexes containing orthometallated push-pull oxazolones were inserted by supramolecular Pd-amino acid coordination on two genetically engineered modified variants of the thermoalkalophilic Geobacillus thermocatenolatus lipase (GTL). Pd-lipase conjugation was performed on the solid phase in the previously immobilized form of GTL under mild conditions, and soluble conjugated Pd-GTL complexes were obtained by simply desorbing by washing with an acetonitrile aqueous solution. Three different Pd complexes were incorporated into two different genetically modified enzyme variants, one containing all the natural cysteine residues changed to serine residues, and another variant including an additional Cys mutation directly in the catalytic serine (Ser114Cys). The new Pd-enzyme conjugates were fluorescent even at ppm concentrations, while under the same conditions free Pd complexes did not show fluorescence at all. The Pd conjugation with the enzyme extremely increases the catalytic profile of the corresponding Pd complex from 200 to almost 1000-fold in the hydrogenation of arenes in aqueous media, achieving in the case of GTL conjugated with orthopalladated 4a an outstanding TOF value of 27 428 min
-1 . Also the applicability of GTL-C114 conjugated with orthopalladated 4b in a site-selective C-H activation reaction under mild conditions has been demonstrated. Therefore, the Pd incorporation into the enzyme produces a highly stable conjugate, and improves remarkably the catalytic activity and selectivity, as well as the fluorescence intensity, of the Pd complexes.- Published
- 2021
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6. Fluorescent Orthopalladated Complexes of 4-Aryliden-5(4 H )-oxazolones from the Kaede Protein: Synthesis and Characterization.
- Author
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Laga E, Dalmau D, Arregui S, Crespo O, Jimenez AI, Pop A, Silvestru C, and Urriolabeitia EP
- Subjects
- Coordination Complexes chemical synthesis, Crystallography, X-Ray, Fluorescent Dyes chemical synthesis, Models, Molecular, Molecular Structure, Coordination Complexes chemistry, Fluorescent Dyes chemistry, Luminescent Proteins chemistry, Oxazolone chemistry, Palladium chemistry
- Abstract
The goal of the work reported here was to amplify the fluorescent properties of 4-aryliden-5(4 H )-oxazolones by suppression of the hula-twist non-radiative deactivation pathway. This aim was achieved by simultaneous bonding of a Pd center to the N atom of the heterocycle and the ortho carbon of the arylidene ring. Two different 4-(( Z )-arylidene)-2-(( E )-styryl)-5(4 H )-oxazolones, the structures of which are closely related to the chromophore of the Kaede protein and substituted at the 2- and 4-positions of the arylidene ring ( 1a OMe; 1b F), were used as starting materials. Oxazolones 1a and 1b were reacted with Pd(OAc)
2 to give the corresponding dinuclear orthometalated palladium derivates 2a and 2b by regioselective C-H activation of the ortho -position of the arylidene ring. Reaction of 2a ( 2b ) with LiCl promoted the metathesis of the bridging carboxylate by chloride ligands to afford dinuclear 3a ( 3b ). Mononuclear complexes containing the orthopalladated oxazolone and a variety of ancillary ligands (acetylacetonate ( 4a , 4b ), hydroxyquinolinate ( 5a ), aminoquinoline ( 6a ), bipyridine ( 7a ), phenanthroline ( 8a )) were prepared from 3a or 3b through metathesis of anionic ligands or substitution of neutral weakly bonded ligands. All species were fully characterized and the X-ray determination of the molecular structure of 7a was carried out. This structure has strongly distorted ligands due to intramolecular interactions. Fluorescence measurements showed an increase in the quantum yield (QY) by up to one order of magnitude on comparing the free oxazolone (QY < 1%) with the palladated oxazolone (QY = 12% for 6a ). This fact shows that the coordination of the oxazolone to the palladium efficiently suppresses the hula-twist deactivation pathway.- Published
- 2021
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7. Tivanisiran, a novel siRNA for the treatment of dry eye disease.
- Author
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Moreno-Montañés J, Bleau AM, and Jimenez AI
- Subjects
- Animals, Dry Eye Syndromes genetics, Gene Silencing, Humans, Hyperemia therapy, Oligonucleotides administration & dosage, Oligonucleotides pharmacology, RNA, Small Interfering pharmacology, Tears metabolism, Dry Eye Syndromes therapy, RNA, Small Interfering administration & dosage, TRPV Cation Channels genetics
- Abstract
Introduction: Dry eye disease (DED) is characterized by an alteration of the tear film with ocular inflammation and neurosensory abnormalities. The main clinical signs of this condition are tear instability and ocular damage. Although DED has gained significant attention in the past few years, limited prescription treatment options are available for patients. Areas covered: The current manuscript summarizes the pre-clinical and clinical development of tivanisiran, a novel small interfering oligonucleotide of RNA (siRNA) used for the treatment of DED. Tivanisiran was designed to silence Transient Receptor Potential Vanilloid 1 (TRPV1); herein the chemistry and mechanism of action of this new compound is also described. Expert opinion: Drugs currently on the market mostly target the inflammatory component of the disease and show only partial efficacy. New compounds addressing other aspects of the disease would provide significant advantages and contribute to a more personalized treatment of the disease. Tivanisiran has been designed to reduce ocular discomfort and pain, and was shown to improve ocular hyperemia and tear quality in human and animal models. Consequently, if the results of the ongoing and future clinical trials meet their study endpoints, tivanisiran could be submitted to obtain approval for the treatment of DED.
- Published
- 2018
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8. Selective Electrochemical Bleaching of the Outer Leaflet of Fluorescently Labeled Giant Liposomes.
- Author
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Perez Jimenez AI, Challier L, Aït-Yahiatène E, Delacotte J, Labbé E, and Buriez O
- Subjects
- Electrochemical Techniques, Hydrogen-Ion Concentration, Microscopy, Confocal, Oxadiazoles chemistry, Phospholipids chemistry, Photobleaching, Fluorescent Dyes chemistry, Liposomes chemistry
- Abstract
Electrochemistry and confocal fluorescence microscopy were successfully combined to selectively bleach and monitor the fluorescence of NBD (7-nitrobenz-2-oxa-1,3-diazole)-labeled phospholipids of giant liposomes. Three types of giant unilamellar vesicles have been investigated, the fluorescent phospholipids being localized either mainly on their outer-, inner-, or both inner/outer leaflets. We established that only the fluorescent lipids incorporated in the outer leaflet of the vesicles underwent electrochemical bleaching upon reduction. The relative fluorescence intensity decay was quantified all along the electrochemical extinction through an original fluorescence loss in electrobleaching (FLIE) assay. As expected, the reorganization of the fluorescent phospholipids followed diffusion-driven dynamics. This was also evidenced by comparison with fluorescence loss in photobleaching (FLIP) and the corresponding numerical model. The value of the lateral diffusion coefficient of phospholipids was found to be similar to that obtained by other methods reported in the literature. This versatile and selective bleaching procedure appears reliable to explore important biological and pharmacological issues., (© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2017
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9. Safety and Efficacy Clinical Trials for SYL1001, a Novel Short Interfering RNA for the Treatment of Dry Eye Disease.
- Author
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Benitez-Del-Castillo JM, Moreno-Montañés J, Jiménez-Alfaro I, Muñoz-Negrete FJ, Turman K, Palumaa K, Sádaba B, González MV, Ruz V, Vargas B, Pañeda C, Martínez T, Bleau AM, and Jimenez AI
- Subjects
- Adolescent, Adult, Dose-Response Relationship, Drug, Double-Blind Method, Dry Eye Syndromes diagnosis, Dry Eye Syndromes metabolism, Female, Humans, Male, Ophthalmic Solutions administration & dosage, Prospective Studies, TRPV Cation Channels drug effects, Tears drug effects, Treatment Outcome, Young Adult, Dry Eye Syndromes drug therapy, RNA, Small Interfering administration & dosage, TRPV Cation Channels metabolism, Tears metabolism
- Abstract
Purpose: To evaluate the efficacy and safety of SYL1001, a short interfering (si) RNA targeting the transient receptor potential cation channel subfamily V member 1 (TRPV1), for the treatment of dry eye disease (DED)., Methods: This study combines a phase I and two phase II clinical trials to test different doses of SYL1001 in a total of 156 healthy subjects and patients with DED. After 10 days of treatment, the primary efficacy endpoints were the effect on (1) the scoring in the Visual Analogue Scale (VAS) and Ocular Surface Disease Index (OSDI) questionnaires, and (2) ocular tolerance evaluated by corneal fluorescein staining and conjunctival hyperemia. Secondary endpoints included the assessment of systemic and local tolerance., Results: Topical administration of SYL1001 1.125% once daily produced a significant decrease in VAS scores compared with placebo from day 4 until the end of treatment (change from baseline at day 10: -1.73 ± 0.32 vs. -0.91 ± 0.34; P = 0.013). For all treatments, OSDI scores were significantly reduced compared to their respective baseline values (P < 0.01), although no significant changes were detected between groups. Conjunctival hyperemia (quantified as normal or abnormal) significantly improved after instillation of SYL1001 1.125% compared with placebo (50% vs. 20%; P < 0.05). Excellent tolerability was reported, with no differences in the rates of occurrence of adverse events between groups., Conclusion: These trials achieved their primary endpoints of identifying the most effective dose of SYL1001 (1.125%). SYL1001 showed a large safety margin and may provide novel therapeutic opportunity for the relief of dry eye. (ClinicalTrials.gov numbers, NCT01438281, NCT01776658, and NCT02455999.).
- Published
- 2016
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10. Small molecule inhibitors of the annexin A2 heterotetramer prevent human papillomavirus type 16 infection.
- Author
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Woodham AW, Taylor JR, Jimenez AI, Skeate JG, Schmidt T, Brand HE, Da Silva DM, and Kast WM
- Subjects
- Cell Survival drug effects, HeLa Cells, Humans, Annexin A2 antagonists & inhibitors, Antiviral Agents pharmacology, Endocytosis drug effects, Human papillomavirus 16 physiology, Virus Internalization drug effects
- Abstract
Objectives: High-risk human papillomavirus (HPV) infection leads to the development of several human cancers that cause significant morbidity and mortality worldwide. HPV type 16 (HPV16) is the most common of the cancer-causing genotypes and gains entry to the basal cells of the epithelium through a non-canonical endocytic pathway that involves the annexin A2/S100A10 heterotetramer (A2t). A2t is composed of two annexin A2 monomers bound to an S100A10 dimer and this interaction is a potential target to block HPV16 infection. Here, recently identified small molecule inhibitors of A2t (A2ti) were investigated for their ability to prevent HPV16 infection in vitro., Methods: A2ti were added to HeLa cells in increasing concentrations prior to the addition of HPV16. Cytotoxicity was evaluated via trypan blue exclusion. HPV16 pseudovirion infection and fluorescently labelled HPV16 capsid internalization was measured with flow cytometry., Results: A2ti blocked HPV16 infection by 100% without substantial cellular toxicity or reduction in cell growth. Furthermore, A2ti blocked HPV16 entry into epithelial cells by 65%, indicating that the observed inhibition of HPV16 infection is in part due to a block in entry and that non-infectious entry may occur in the absence of A2t binding., Conclusions: These results demonstrate that targeting A2t may be an effective strategy to prevent HPV16 infection., (© The Author 2015. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2015
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11. Phase I clinical trial of SYL040012, a small interfering RNA targeting β-adrenergic receptor 2, for lowering intraocular pressure.
- Author
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Moreno-Montañés J, Sádaba B, Ruz V, Gómez-Guiu A, Zarranz J, González MV, Pañeda C, and Jimenez AI
- Subjects
- Adolescent, Adult, Drug Administration Schedule, Female, Humans, Male, Ophthalmic Solutions administration & dosage, RNA Interference, RNA, Small Interfering administration & dosage, RNA, Small Interfering adverse effects, Receptors, Adrenergic, beta-2 metabolism, Treatment Outcome, Young Adult, Intraocular Pressure genetics, RNA, Small Interfering genetics, Receptors, Adrenergic, beta-2 genetics
- Abstract
The objective of this study was to evaluate ocular tolerance, safety, and effect on intraocular pressure (IOP) of a topically administered small interfering RNA; SYL040012, on healthy volunteers. The study was an open-label, controlled, single-center study comprised of two intervals that enrolled 30 healthy subjects having IOP below 21 mmHg. SYL040012 was administered to one eye as a single dose to six subjects during interval 1. During interval 2 two different doses of SYL040012 were administered to one eye on a daily basis to two separate groups of 12 subjects each, over a period of 7 days. The contralateral eye was evaluated but not administered and served as control for the tolerance study. SYL040012 was well tolerated locally. No local or systemic adverse events related to the product developed in response to any of the doses studied. SYL040012 was not detected in plasma at any time point. Administration of SYL040012 over a period of 7 days reduced IOP values in 15 out of 24 healthy subjects regardless of the dose used. IOP decrease was statistically significant in response to one of the doses tested and responsiveness to SYL040012 seemed to be greater in individuals with higher baseline IOP.
- Published
- 2014
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12. Differential expression and localization of transient receptor potential vanilloid 1 in rabbit and human eyes.
- Author
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Martínez-García MC, Martínez T, Pañeda C, Gallego P, Jimenez AI, and Merayo J
- Subjects
- Animals, Humans, Immunohistochemistry, RNA, Messenger analysis, Rabbits, Reverse Transcriptase Polymerase Chain Reaction, TRPV Cation Channels analysis, Eye metabolism, TRPV Cation Channels biosynthesis
- Abstract
Introduction: The superfamily of transient receptor potential (TRP) cation channels is involved in nociception. Members of this family, such as the vanilloid receptor type 1 (TRPV1) channel, are activated by a wide range of stimuli including heat (⟩43°C), low pH (⟨6.5), hypoxia, and hypertonicity. Here we report TRPV1 expression in rabbit and human eyes., Material and Methods: We analyzed the expression of TRPV1 mRNA by quantitative reverse transcription polymerase chain reaction (qRT-PCR) and protein by immunohistochemistry in eyes of New Zealand White rabbits and humans., Results: In rabbit and human eyes, TRPV1 protein was present in all layers of the corneal epithelium, but only in the basal layer of the conjunctiva. It was also in the ciliary and lens epithelia of both species as well as in the secretory cells of the rabbit lacrimal gland. The retinal pigment epithelium was positive for this protein in both species. TRPV1 was also present in rabbit Müller cells, where it had a similar pattern of expression to vimentin intermediate filaments. Analysis by qRT-PCR showed that TRPV1 mRNA was found in all of the structures where the protein was present. The highest level was in the lens and the lowest in the retina., Conclusion: TRPV1 is expressed in cells that are particularly active in Ca²⁺ exchange as well as in cells with significant water transport activity. Because TRPV1 is a Ca²⁺ channel, it probably functions in the regulation of both water and Ca²⁺ movements in ocular tissues.
- Published
- 2013
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13. Nanoparticle-induced vascular blockade in human prostate cancer.
- Author
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Agemy L, Sugahara KN, Kotamraju VR, Gujraty K, Girard OM, Kono Y, Mattrey RF, Park JH, Sailor MJ, Jimenez AI, Cativiela C, Zanuy D, Sayago FJ, Aleman C, Nussinov R, and Ruoslahti E
- Subjects
- Animals, Cell Line, Tumor, Drug Delivery Systems, Ferric Compounds chemistry, Humans, Magnetic Resonance Imaging, Male, Metal Nanoparticles chemistry, Mice, Mice, Inbred BALB C, Mice, Nude, Prostatic Neoplasms pathology, Xenograft Model Antitumor Assays, Metal Nanoparticles therapeutic use, Oligopeptides administration & dosage, Prostatic Neoplasms blood supply, Prostatic Neoplasms therapy
- Abstract
The tumor-homing pentapeptide CREKA (Cys-Arg-Glu-Lys-Ala) specifically homes to tumors by binding to fibrin and fibrin-associated clotted plasma proteins in tumor vessels. Previous results show that CREKA-coated superparamagnetic iron oxide particles can cause additional clotting in tumor vessels, which creates more binding sites for the peptide. We have used this self-amplifying homing system to develop theranostic nanoparticles that simultaneously serve as an imaging agent and inhibit tumor growth by obstructing tumor circulation through blood clotting. The CREKA nanoparticles were combined with nanoparticles coated with another tumor-homing peptide, CRKDKC, and nanoparticles with an elongated shape (nanoworms) were used for improved binding efficacy. The efficacy of the CREKA peptide was then increased by replacing some residues with nonproteinogenic counterparts, which increased the stability of the peptide in the circulation. Treatment of mice bearing orthotopic human prostate cancer tumors with the targeted nanoworms caused extensive clotting in tumor vessels, whereas no clotting was observed in the vessels of normal tissues. Optical and magnetic resonance imaging confirmed tumor-specific targeting of the nanoworms, and ultrasound imaging showed reduced blood flow in tumor vessels. Treatment of mice with prostate cancer with multiple doses of the nanoworms induced tumor necrosis and a highly significant reduction in tumor growth.
- Published
- 2010
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14. Distinctive gene expression of human lung adenocarcinomas carrying LKB1 mutations.
- Author
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Fernandez P, Carretero J, Medina PP, Jimenez AI, Rodriguez-Perales S, Paz MF, Cigudosa JC, Esteller M, Lombardia L, Morente M, Sanchez-Verde L, Sotelo T, and Sanchez-Cespedes M
- Subjects
- AMP-Activated Protein Kinase Kinases, Adenocarcinoma metabolism, Gene Expression, Genetic Variation, Humans, Lung Neoplasms metabolism, Mutation, Oligonucleotide Array Sequence Analysis, Signal Transduction genetics, Adenocarcinoma genetics, Lung Neoplasms genetics, Protein Serine-Threonine Kinases genetics
- Abstract
LKB1, a tumor-suppressor gene that codifies for a serine/threonine kinase, is mutated in the germ-line of patients affected with the Peutz-Jeghers syndrome (PJS), which have an increased incidence of several cancers including gastrointestinal, pancreatic and lung carcinomas. Regarding tumors arising in non-PJS patients, we recently observed that at least one-third of lung adenocarcinomas (LADs) harbor somatic LKB1 gene mutations, supporting a role for LKB1 in the origin of some sporadic tumors. To characterize the pattern of LKB1 mutations in LADs further, we first screened for LKB1 gene alterations (gene mutations, promoter hypermethylation and homozygous deletions) in 19 LADs and, in agreement with our previous data, five of them (26%) were shown to harbor mutations, all of which gave rise to a truncated protein. Recent reports demonstrate that LKB1 is able to suppress cell growth, but little is known about the specific mechanism by which it functions. To further our understanding of LKB1 function, we analysed global expression in lung primary tumors using cDNA microarrays to identify LKB1-specific variations in gene expression. In all, 34 transcripts, 24 of which corresponded to known genes, differed significantly between tumors with and without LKB1 gene alterations. Among the most remarkable findings was deregulation of transcripts involved in signal transduction (e.g. FRAP1/mTOR, ARAF1 and ROCK2), cytoskeleton (e.g. MPP1), transcription factors (e.g. MEIS2, ATF5), metabolism of AMP (AMPD3 and APRT) and ubiquitinization (e.g. USP16 and UBE2L3). Real-time quantitative RT-PCR on 15 tumors confirmed the upregulation of the homeobox MEIS2 and of the AMP-metabolism AMPD3 transcripts in LKB1-mutant tumors. In addition, immunohistochemistry in 10 of the lung tumors showed the absence of phosphorylated FRAP1/mTOR protein in LKB1-mutant tumors, indicating that LKB1 mutations do not lead to FRAP1/mTOR protein kinase activation. In conclusion, our results reveal that several important factors contribute to LKB1-mediated carcinogenesis in LADs, confirming previous observations and identifying new putative pathways that should help to elucidate the biological role of LKB1.
- Published
- 2004
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15. Growth and molecular profile of lung cancer cells expressing ectopic LKB1: down-regulation of the phosphatidylinositol 3'-phosphate kinase/PTEN pathway.
- Author
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Jimenez AI, Fernandez P, Dominguez O, Dopazo A, and Sanchez-Cespedes M
- Subjects
- AMP-Activated Protein Kinase Kinases, Adenocarcinoma metabolism, Adenocarcinoma pathology, Apoptosis genetics, Cell Division genetics, Down-Regulation, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Humans, Lung Neoplasms metabolism, Lung Neoplasms pathology, Oligonucleotide Array Sequence Analysis, PTEN Phosphohydrolase, Protein Serine-Threonine Kinases biosynthesis, Reverse Transcriptase Polymerase Chain Reaction, Signal Transduction genetics, Transfection, Tumor Cells, Cultured, Adenocarcinoma genetics, Lung Neoplasms genetics, Phosphatidylinositol 3-Kinases physiology, Phosphoric Monoester Hydrolases physiology, Protein Serine-Threonine Kinases genetics, Tumor Suppressor Proteins physiology
- Abstract
Germ-line mutations in LKB1 gene cause the Peutz-Jeghers syndrome (PJS), a genetic disease with increased risk of malignancies. Recently, LKB1-inactivating mutations have been identified in one-third of sporadic lung adenocarcinomas, indicating that LKB1 gene inactivation is critical in tumors other than those of the PJS syndrome. However, the in vivo substrates of LKB1 and its role in cancer development have not been completely elucidated. Here we show that overexpression of wild-type LKB1 protein in A549 lung adenocarcinomas cells leads to cell-growth suppression. To examine changes in gene expression profiles subsequent to exogenous wild-type LKB1 in A549 cells, we used cDNA microarrays. We detected deregulation of 100 genes involved in cell proliferation, apoptosis, and cell adhesion. Strikingly, modification of the expression of well-known p53-responsive genes such as GADD45, TOP2A, and p21 suggests that growth suppression in A549 cells overexpressing LKB1 may be mediated by p53. In addition, PTEN up-regulation indicates that LKB1 could be involved in the PTEN/phosphatidylinositol-3'-kinase(PI3K)/AKT molecular pathway. Thus, our results give some insights into the understanding of how LKB1 inactivation contributes to lung carcinogenesis.
- Published
- 2003
16. Study of the conformational profile of the norbornane analogues of phenylalanine.
- Author
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Cordomí A, Gomez-Catalan J, Jimenez AI, Cativiela C, and Perez JJ
- Subjects
- Cyclization, Models, Molecular, Protein Conformation, Stereoisomerism, Thermodynamics, Norbornanes chemistry, Phenylalanine analogs & derivatives
- Abstract
The conformational profile of the eight stereoisomeric 2-amino-3-phenylnorbornane-2-carboxylic acids (2-amino-3-phenylbicyclo[2.2.1]heptane-2-carboxylic acids) has been assessed by computational methods. These molecules constitute a series of four enantiomeric pairs that can be considered as rigid analogues of either L- or D-phenylalanine. The conformational space of their N-acetyl methylamide derivatives has been explored within the molecular mechanics framework, using the parm94 set of parameters of the AMBER force field. Local minimum energy conformations have been further investigated at the ab initio level by means of the Hartree-Fock and second order Moller-Plesset perturbation energy calculations using a 6-31G(d) basis set. The results of the present work suggest that the bulky norbornane structure induces two kinds of conformational constraints on the residues. On one hand, those of a steric nature directly imposed by the bicycle on the peptide backbone and, on the other hand, those that limit the orientations attainable by the phenyl ring which, in turn, reduces further the flexibility of the peptide backbone. A comparative analysis of the conformational profile of the phenylnorbornane amino acids with that of the norbornane amino acids devoid of the beta-phenyl substituent suggests that the norbornane system hampers the residue to adopt extended conformations in favour of C7-like structures. However, the bicycle itself does not impart a clear preference for any of the two possible C7 minima. It is the aromatic side chain, which is forced to adopt an almost eclipsed orientation, that breaks this symmetry introducing a marked preference for a single region of the (phi, psi) conformational space in each of the phenylalanine norbornane analogues investigated.
- Published
- 2002
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17. Study of the conformational profile of the cyclohexane analogs of L-phenylalanine.
- Author
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Gomez-Catalan J, Jimenez AI, Cativiela C, and Perez JJ
- Subjects
- Phenylalanine analogs & derivatives, Cyclohexanes chemistry, Dipeptides chemistry, Models, Molecular, Phenylalanine chemistry, Protein Conformation
- Abstract
The conformational profile of the conformationally constrained cyclohexane analogs of phenylalanine (1-amino-2-phenylcyclohexanecarboxylic acids, c6Phe) was assessed using computational methods. For this purpose, the conformational space of the N-acetyl methylamide derivatives of the stereoisomers (2S,3R)c6Phe and (2S,3S)c6Phe was explored by computing their respective Ramachandran maps, and low-energy minima were characterized at molecular mechanics level by means of the AMBER program, using the parm94 force field set of parameters. In order to assess the performance of the molecular mechanics calculations, each of the low-energy conformations was also investigated further at the ab initio level. Accordingly, the molecular mechanics geometries were used as starting conformations to perform full geometry optimizations at the Hartree-Fock level, using a 6-31G(d) basis set. Analysis of the results revealed that the cyclohexane structure directly induces some restrictions on the backbone, and constrains the orientation of the aromatic side-chain to two narrow regions for each stereoisomer. The conformational profile of these amino acids is then explained on the grounds of the interaction between the rigidly held phenyl ring and the main chain NH and CO groups. The results obtained are in good accordance with the experimental observations.
- Published
- 2001
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18. Study of the conformational profile of selected unnatural amino acid residues derived from L-phenylalanine.
- Author
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Gomez-Catalan J, Perez JJ, Jimenez AI, and Cativiela C
- Subjects
- Molecular Conformation, Dipeptides chemistry, Phenylalanine analogs & derivatives, Phenylalanine chemistry
- Abstract
The present work reports the results of a conformational study performed on seven unnatural amino acid residues and on its natural precursor, investigated by means of computational methods at the molecular mechanics level. Amino acid residues selected for the present study are derivatives of L-phenylalanine substituted at the alpha and/or beta carbons. This series is composed of different linear analogs, including alpha-methyl, beta-methyl and beta-phenyl substituted with different stereochemistry. Analysis of the Ramachandran maps of the corresponding dipeptides in vacuo reveals their conformational preferences, to be used as guidance for the synthesis of constrained peptide analogs with desired conformational propensities. The available conformational space for every dipeptide is also analysed.
- Published
- 1999
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19. Multicomponent analysis: Comparison of various graphical and numerical methods.
- Author
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Bautista RD, Jimenez F, Jimenez AI, and Arias JJ
- Abstract
The performance of several graphical (zero-crossing and derivative quotient spectra with standardized divisor) and numerical methods (MULTIC and PLS) for the resolution of binary and ternary mixtures of species is compared. Numerical methods were found to be specially suited to multicomponent analysis, particularly for mixtures containing more than two analytes with highly overlapped spectra. The results obtained by using the compared methods to analyse various synthetic mixtures of acetylsalicylic acid, caffeine and thiamine were quite consistent and errors in the simultaneous quantification of the analytes amounted to less than 5% in all instances.
- Published
- 1993
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20. MAPLE SYRUP URINE DISEASE. REPORT OF THE FIRST CASE IN PUERTO RICO.
- Author
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JIMENEZ AI, SIFONTES JE, and SANCHEZLONGO LP
- Subjects
- Humans, Infant, Infant, Newborn, Puerto Rico, Chromatography, Diagnosis, Differential, Epidemiology, Genetics, Medical, Infant, Newborn, Diseases, Maple Syrup Urine Disease, Pathology, Urine
- Published
- 1963
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