28 results on '"Klaassens M"'
Search Results
2. Genetic factors in congenital diaphragmatic hernia
- Author
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Holder, A.M., Klaassens, M., Tibboel, D., de Klein, A., Scott, D.A., and Lee, B.
- Subjects
Gene expression -- Analysis ,Diaphragm -- Hernia ,Diaphragm -- Genetic aspects ,Diaphragm -- Causes of ,Diaphragm -- Research ,Biological sciences - Abstract
Congenital diaphragmatic hernia (CDH) is a common birth defect associated with high mortality and morbidity and many evidence show that genetic factors play an important role in the development of CDH. These key findings that form the basis for future research are examined.
- Published
- 2007
3. Congenital diaphragmatic hernia and chromosome 15q26: determination of a candidate region by use of fluorescent in situ hybridization and array-based comparative genomic hybridization
- Author
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Klaassens, M., van Dooren, M., Eussen, H.J., Douben, H., den Dekker, A.T., Lee, C., Donahoe, P.K., Galjaard, R.J., Goemaere, N., de Krijger, R.R., Wouters, C., Wauters, J., Oostra, B.A., Tibboel, D., and de Klein, A.
- Subjects
Genetic disorders -- Research ,Diaphragm -- Hernia ,Diaphragm -- Research ,Diaphragm -- Genetic aspects ,Biological sciences - Published
- 2005
4. Ehlers–Danlos arthrochalasia type (VIIA–B) – expanding the phenotype: from prenatal life through adulthood
- Author
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Klaassens, M, Reinstein, E, Hilhorst-Hofstee, Y, Schrander, J JP, Malfait, F, Staal, H, ten Have, L C, Blaauw, J, Roggeveen, H CJ, Krakow, D, De Paepe, A, van Steensel, M AM, Pals, G, Graham, J M, Jr, and Schrander-Stumpel, C TRM
- Published
- 2012
- Full Text
- View/download PDF
5. Unique skin changes in a case of Albright hereditary osteodystrophy caused by a rare GNAS1 mutation
- Author
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Klaassens, M., Blom, E. W., Schrander, J. J.P., Ris-Stalpers, C., Nieuwenhuijzen Kruseman, A. C., van Steensel, M. A.M., and Schrander-Stumpel, C. T.R.M.
- Published
- 2010
- Full Text
- View/download PDF
6. A guideline for the clinical management of basal cell naevus syndrome (Gorlin–Goltz syndrome)*.
- Author
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Verkouteren, B.J.A., Cosgun, B., Reinders, M.G.H.C., Kessler, P.A.W.K., Vermeulen, R.J., Klaassens, M., Lambrechts, S., van Rheenen, J.R., van Geel, M., Vreeburg, M., and Mosterd, K.
- Subjects
BASAL cell nevus syndrome ,SYNDROMES - Abstract
Linked Comment: E. Epstein. Br J Dermatol 2022; 186:203. Plain language summary available online [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
7. Prenatal detection and outcome of congenital diaphragmatic hernia (CDH) associated with deletion of chromosome 15q26: Two patients and review of the literature
- Author
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Klaassens, M., Galjaard, R. J.H., Scott, D. A., Brüggenwirth, H. T., van Opstal, D., Fox, M. V., Higgins, R. R., Cohen-Overbeek, T. E., Schoonderwaldt, E. M., Lee, B., Tibboel, D., and de Klein, A.
- Published
- 2007
- Full Text
- View/download PDF
8. Congenital Diaphragmatic Hernia Associated With Duplication of 11q23-qter
- Author
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Klaassens, M., Scott, D. A., van Dooren, M., Hochstenbach, R., Eussen, H. J., Cai, W. W., Galjaard, R. J., Wouters, C., Poot, M., Laudy, J., Lee, B., Tibboel, D., and de Klein, A.
- Published
- 2006
- Full Text
- View/download PDF
9. De Novo and Inherited Loss-of-Function Variants in TLK2: Clinical and Genotype-Phenotype Evaluation of a Distinct Neurodevelopmental Disorder
- Author
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Reijnders, MRF, Miller, KA, Alvi, M, Goos, JAC, Lees, MM, de Burca, A, Henderson, A, Kraus, A, Mikat, B, de Vries, BBA, Isidor, B, Kerr, B, Marcelis, C, Schluth-Bolard, C, Deshpande, C, Ruivenkamp, CAL, Wieczorek, D, Deciphering Developmental Disorders Study, Baralle, D, Blair, EM, Engels, H, Lüdecke, H-J, Eason, J, Santen, GWE, Clayton-Smith, J, Chandler, K, Tatton-Brown, K, Payne, K, Helbig, K, Radtke, K, Nugent, KM, Cremer, K, Strom, TM, Bird, LM, Sinnema, M, Bitner-Glindzicz, M, van Dooren, MF, Alders, M, Koopmans, M, Brick, L, Kozenko, M, Harline, ML, Klaassens, M, Steinraths, M, Cooper, NS, Edery, P, Yap, P, Terhal, PA, van der Spek, PJ, Lakeman, P, Taylor, RL, Littlejohn, RO, Pfundt, R, Mercimek-Andrews, S, Stegmann, APA, Kant, SG, McLean, S, Joss, S, Swagemakers, SMA, Douzgou, S, Wall, SA, Küry, S, Calpena, E, Koelling, N, McGowan, SJ, Twigg, SRF, Mathijssen, IMJ, Nellaker, C, Brunner, HG, and Wilkie, AOM
- Subjects
Adult ,Male ,Adolescent ,kinase ,Messenger ,Inheritance Patterns ,Translocation ,Medical and Health Sciences ,Cell Line ,Young Adult ,Genetic ,Clinical Research ,Loss of Function Mutation ,Genetics ,2.1 Biological and endogenous factors ,Humans ,Aetiology ,Child ,Preschool ,Genetic Association Studies ,Genetics & Heredity ,Tousled-like ,Base Sequence ,Human Genome ,Neurosciences ,Facies ,Infant ,Deciphering Developmental Disorders Study ,Biological Sciences ,Brain Disorders ,haploinsufficiency ,Neurodevelopmental Disorders ,intellectual disability ,RNA ,Female ,Protein Kinases ,facial averaging ,Biotechnology - Abstract
Next-generation sequencing is a powerful tool for the discovery of genes related to neurodevelopmental disorders (NDDs). Here, we report the identification of a distinct syndrome due to de novo or inherited heterozygous mutations in Tousled-like kinase 2 (TLK2) in 38 unrelated individuals and two affected mothers, using whole-exome and whole-genome sequencing technologies, matchmaker databases, and international collaborations. Affected individuals had a consistent phenotype, characterized by mild-borderline neurodevelopmental delay (86%), behavioral disorders (68%), severe gastro-intestinal problems (63%), and facial dysmorphism including blepharophimosis (82%), telecanthus (74%), prominent nasal bridge (68%), broad nasal tip (66%), thin vermilion of the upper lip (62%), and upslanting palpebral fissures (55%). Analysis of cell lines from three affected individuals showed that mutations act through a loss-of-function mechanism in at least two case subjects. Genotype-phenotype analysis and comparison of computationally modeled faces showed that phenotypes of these and other individuals with loss-of-function variants significantly overlapped with phenotypes of individuals with other variant types (missense and C-terminal truncating). This suggests that haploinsufficiency of TLK2 is the most likely underlying disease mechanism, leading to a consistent neurodevelopmental phenotype. This work illustrates the power of international data sharing, by the identification of 40 individuals from 26 different centers in 7 different countries, allowing the identification, clinical delineation, and genotype-phenotype evaluation of a distinct NDD caused by mutations in TLK2.
- Published
- 2018
10. De Novo and Inherited Loss-of-Function Variants in TLK2 : Clinical and Genotype-Phenotype Evaluation of a Distinct Neurodevelopmental Disorder
- Author
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Reijnders, M.R.F., Miller, K.A., Alvi, M., Goos, J.A.C., Lees, M.M., Burca, A. de, Henderson, A., Kraus, A., Mikat, B., Vries, B.B.A. de, Isidor, B., Kerr, B., Marcelis, C.L.M., Schluth-Bolard, C., Deshpande, C., Ruivenkamp, C.A.L., Wieczorek, D., Baralle, D., Blair, E.M., Engels, H., Ludecke, H.J., Eason, J., Santen, G.W.E., Clayton-Smith, J., Chandler, K., Tatton-Brown, K., Payne, K., Helbig, K., Radtke, K., Nugent, K.M., Cremer, K., Strom, T.M., Bird, L.M., Sinnema, M., Bitner-Glindzicz, M., Dooren, M.F. van, Alders, M., Koopmans, M., Brick, L., Kozenko, M., Harline, M.L., Klaassens, M., Steinraths, M., Cooper, N.S., Edery, P., Yap, P., Terhal, P.A., Spek, P.J. van der, Lakeman, P., Taylor, R.L., Littlejohn, R.O., Pfundt, R.P., Mercimek-Andrews, S., Stegmann, A.P.A., Kant, S.G., McLean, S., Joss, S., Swagemakers, S.M.A., Douzgou, S., Wall, S.A., Kury, S., Calpena, E., Koelling, N., McGowan, S.J., Twigg, S.R.F., Mathijssen, I.M.J., Nellaker, C., Brunner, H.G., Wilkie, A.O.M., Plastic and Reconstructive Surgery and Hand Surgery, Clinical Genetics, and Pathology
- Subjects
Tousled-like ,Facial Averaging ,Haploinsufficiency ,Intellectual Disability ,Kinase ,Adult ,Male ,Adolescent ,kinase ,viruses ,Inheritance Patterns ,Medizin ,Translocation, Genetic ,Cell Line ,Young Adult ,Loss of Function Mutation ,Report ,Humans ,RNA, Messenger ,Child ,Genetic Association Studies ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Base Sequence ,Facies ,Infant ,haploinsufficiency ,Neurodevelopmental Disorders ,intellectual disability ,Child, Preschool ,Female ,Protein Kinases ,facial averaging ,Rare cancers Radboud Institute for Health Sciences [Radboudumc 9] - Abstract
Human adenovirus (HAdV) E1B-55K is a multifunctional regulator of productive viral replication and oncogenic transformation in nonpermissive mammalian cells. These functions depend on E1B-55K's posttranslational modification with the SUMO protein and its binding to HAdV E4orf6. Both early viral proteins recruit specific host factors to form an E3 ubiquitin ligase complex that targets antiviral host substrates for proteasomal degradation. Recently, we reported that the PML-NB associated factor Daxx represses efficient HAdV productive infection and is proteasomally degraded via a SUMO-E1B-55K-dependent, E4orf6-independent pathway, the details of which remained to be established. RNF4, a cellular SUMO-targeted ubiquitin ligase (STUbL), induces ubiquitinylation of specific SUMOy lated proteins and plays an essential role during DNA repair. Here, we show that E1B-55K recruits RNF4 to the insoluble nuclear matrix fraction of the infected cell to support RNF4/Daxx association, promoting Daxx PTM and thus inhibiting this antiviral factor. Removing RNF4 from infected cells using RNA interference resulted in blocking the proper establishment of viral replication centers and significantly diminished viral gene expression. These results provide a model for how HAdV antagonize the antiviral host responses by exploiting the functional capacity of cellular STUbLs. Thus, RNF4 and its STUbL function represent a positive factor during lytic infection and a novel candidate for future therapeutic antiviral intervention strategies.IMPORTANCE Daxx is a PML-NB-associated transcription factor that was recently shown to repress efficient HAdV productive infection. To counteract this antiviral measurement during infection, Daxx is degraded via a novel pathway including viral E1B-55K and host proteasomes. This virus-mediated degradation is independent of the classical HAdV E3 ubiquitin ligase complex, which is essential during viral infection to target other host antiviral substrates. To maintain a productive viral life cycle, HAdV E1B-55K early viral protein inhibits the chromatin-remodeling factor Daxx in a SUMO-dependent manner. In addition, viral E1B-55K protein recruits the STUbL RNF4 and sequesters it into the insoluble fraction of the infected cell. E1B-55K promotes complex formation between RNF4-and E1B-55K-targeted Daxx protein, supporting Daxx posttranslational modification prior to functional inhibition. Hence, RNF4 represents a novel host factor that is beneficial for HAdV gene expression by supporting Daxx counteraction. In this regard, RNF4 and other STUbL proteins might represent novel targets for therapeutic intervention.
- Published
- 2018
11. The benign joint hypermobility syndrome: guidelines for diagnosis and management
- Author
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Vreeburg, M., de Vos-Houben, J., Schouten, M., Weiss, J., Pals, G., Maugeri, A., Robben, S., Detisch, Y., van Eijsden-Besseling, M.D.F, Verbunt, A.M.C.F., Klaassens, M., van Douveren, F., van Steensel, M., Marcus-Soekarman, D., Beeldvorming, Revalidatiegeneeskunde, Klinische Genetica, RS: NUTRIM - R1 - Metabolic Syndrome, and RS: CAPHRI School for Public Health and Primary Care
- Published
- 2012
12. Designing a place for goodbye: The architecture of crematoria in The Netherlands
- Author
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Klaassens, M., Groote, P., Davies, D., Park, C-W., Faculty of Spatial Sciences, and Urban and Regional Studies Institute
- Subjects
crematorium ,ARCHITECTURE - Published
- 2012
13. Natural Burial Ground Bergerbos: An Alternative Place of Burial in the Netherlands
- Author
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Klaassens, M., Groote, P., Rotar, M., Faculty of Spatial Sciences, and Urban and Regional Studies Institute
- Published
- 2010
14. Reply to Castiglia et al
- Author
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Klaassens, M., Tibboel, D., Oostra, B.A., and de Klein, A.
- Subjects
Biological sciences - Published
- 2005
15. Tibia hemimelia in a patient with CHARGE syndrome: A rare but recurrent phenomenon.
- Author
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Aukema SM, de Geus CM, Robben SGF, van Kaam KJAF, Staal HM, Witlox AM, de la Haye NAJ, Klaassens M, Coumans A, Stegmann APA, Paley D, and Stumpel CTRM
- Subjects
- Femur, Humans, Tibia abnormalities, Tibia diagnostic imaging, CHARGE Syndrome, Ectromelia diagnosis, Ectromelia diagnostic imaging
- Published
- 2022
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16. Using the concept of activity space to understand the social health of older adults living with memory problems and dementia at home.
- Author
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Sturge J, Klaassens M, Lager D, Weitkamp G, Vegter D, and Meijering L
- Subjects
- Adaptation, Psychological, Aged, Aging, Humans, Memory Disorders epidemiology, Dementia epidemiology, Walking
- Abstract
Globally as the population ages, the prevalence of dementia will increase. Simultaneously, there is a trend toward people ageing at home. Therefore, more people will be ageing at home with dementia, as opposed to institutional environments. In this context, there has been a recent shift in research exploring ways that people can live well with the consequences of the disease. As a part of this emerging research, the social and spatial aspects of the lives of people living with memory problems are becoming increasingly of interest. The aim of this article is to use the concept of activity space to examine the social health of older adults with memory problems and dementia who live at home. Activity space data were collected from seven older adults experiencing memory problems and living at home in the Netherlands. Using a mixed-methods approach, insight into their activity spaces were gained through walking interviews, 14 days of global positioning system (GPS) movement data, travel diary entries and in-depth interviews. The GPS data, travel diary data and interview transcripts were analyzed using a grounded visualization approach. Our findings show that participants interact independently in routine activity spaces but depend on others to participate in occasional activity spaces. Interactions within both these spaces contribute to the social health of older adults with memory problems and dementia who live at home. Additionally, participants used coping strategies and decision-making to maintain autonomy in daily life. The findings can inform dementia-friendly initiatives and social health care planning., (Copyright © 2020 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2021
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17. Pathogenic variants in TNRC6B cause a genetic disorder characterised by developmental delay/intellectual disability and a spectrum of neurobehavioural phenotypes including autism and ADHD.
- Author
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Granadillo JL, P A Stegmann A, Guo H, Xia K, Angle B, Bontempo K, Ranells JD, Newkirk P, Costin C, Viront J, Stumpel CT, Sinnema M, Panis B, Pfundt R, Krapels IPC, Klaassens M, Nicolai J, Li J, Jiang Y, Marco E, Canton A, Latronico AC, Montenegro L, Leheup B, Bonnet C, M Amudhavalli S, Lawson CE, McWalter K, Telegrafi A, Pearson R, Kvarnung M, Wang X, Bi W, Rosenfeld JA, and Shinawi M
- Subjects
- Attention Deficit Disorder with Hyperactivity complications, Attention Deficit Disorder with Hyperactivity pathology, Autistic Disorder complications, Autistic Disorder pathology, Child, Child, Preschool, Developmental Disabilities genetics, Developmental Disabilities pathology, Female, Heterozygote, Humans, Intellectual Disability complications, Intellectual Disability genetics, Intellectual Disability pathology, Language Development Disorders genetics, Language Development Disorders pathology, Male, Motor Skills Disorders genetics, Motor Skills Disorders pathology, Mutation genetics, Phenotype, Exome Sequencing, Attention Deficit Disorder with Hyperactivity genetics, Autistic Disorder genetics, Genetic Predisposition to Disease, RNA-Binding Proteins genetics
- Abstract
Background: Rare variants in hundreds of genes have been implicated in developmental delay (DD), intellectual disability (ID) and neurobehavioural phenotypes. TNRC6B encodes a protein important for RNA silencing. Heterozygous truncating variants have been reported in three patients from large cohorts with autism, but no full phenotypic characterisation was described., Methods: Clinical and molecular characterisation was performed on 17 patients with TNRC6B variants. Clinical data were obtained by retrospective chart review, parent interviews, direct patient interaction with providers and formal neuropsychological evaluation., Results: Clinical findings included DD/ID (17/17) (speech delay in 94% (16/17), fine motor delay in 82% (14/17) and gross motor delay in 71% (12/17) of subjects), autism or autistic traits (13/17), attention deficit and hyperactivity disorder (ADHD) (11/17), other behavioural problems (7/17) and musculoskeletal findings (12/17). Other congenital malformations or clinical findings were occasionally documented. The majority of patients exhibited some dysmorphic features but no recognisable gestalt was identified. 17 heterozygous TNRC6B variants were identified in 12 male and five female unrelated subjects by exome sequencing (14), a targeted panel (2) and a chromosomal microarray (1). The variants were nonsense (7), frameshift (5), splice site (2), intragenic deletions (2) and missense (1)., Conclusions: Variants in TNRC6B cause a novel genetic disorder characterised by recurrent neurocognitive and behavioural phenotypes featuring DD/ID, autism, ADHD and other behavioural abnormalities. Our data highly suggest that haploinsufficiency is the most likely pathogenic mechanism. TNRC6B should be added to the growing list of genes of the RNA-induced silencing complex associated with ID/DD, autism and ADHD., Competing Interests: Competing interests: KM, AT and RP are employed by GeneDx, and XW, WB, JAR receive salary support from Baylor Genetics Laboratory. Both laboratories offer extensive genetic laboratory testing, including exome sequencing and derive revenue from this activity., (© Author(s) (or their employer(s)) 2020. No commercial re-use. See rights and permissions. Published by BMJ.)
- Published
- 2020
- Full Text
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18. Flexible and Extended Linker Domains Support Efficient Targeting of Heh2 to the Inner Nuclear Membrane.
- Author
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Rempel IL, Popken P, Ghavami A, Mishra A, Hapsari RA, Wolters AHG, Veldsink AC, Klaassens M, Meinema AC, Poolman B, Giepmans BNG, Onck PR, Steen A, and Veenhoff LM
- Subjects
- Endoplasmic Reticulum metabolism, Membrane Proteins genetics, Models, Molecular, Mutation, Nuclear Proteins genetics, Protein Conformation, Protein Domains, Protein Sorting Signals, Protein Unfolding, Saccharomyces cerevisiae genetics, Membrane Proteins chemistry, Membrane Proteins metabolism, Nuclear Envelope metabolism, Nuclear Proteins chemistry, Nuclear Proteins metabolism, Saccharomyces cerevisiae metabolism
- Abstract
The nuclear pore complex (NPC) is embedded in the nuclear envelope and forms the main gateway to the nuclear interior including the inner nuclear membrane (INM). Two INM proteins in yeast are selectively imported. Their sorting signals consist of a nuclear localization signal, separated from the transmembrane domain by a long intrinsically disordered (ID) linker. We used computational models to predict the dynamic conformations of ID linkers and analyzed the INM targeting efficiency of proteins with linker regions with altered Stokes radii and decreased flexibilities. We find that flexibility, Stokes radius, and the frequency at which the linkers are at an extended end-to-end distance larger than 25 nm are good predictors for the targeting of the proteins. The data are consistent with a transport mechanism in which INM targeting of Heh2 is dependent on an ID linker that facilitates the crossing of the approximately 25-nm thick NPC scaffold., Competing Interests: Declaration of Interests The authors declare no competing interests., (Copyright © 2019 Elsevier Ltd. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
19. Hypermobility in individuals with Kabuki syndrome: The effect of growth hormone treatment.
- Author
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Schott DA, Stumpel CTRM, and Klaassens M
- Subjects
- Abnormalities, Multiple drug therapy, Abnormalities, Multiple physiopathology, Adolescent, Child, Child, Preschool, Cohort Studies, Databases, Genetic, Face physiopathology, Female, Growth Hormone administration & dosage, Hematologic Diseases drug therapy, Hematologic Diseases physiopathology, Humans, Joint Instability drug therapy, Joint Instability physiopathology, Male, Mutation, Prospective Studies, Severity of Illness Index, Vestibular Diseases drug therapy, Vestibular Diseases physiopathology, Abnormalities, Multiple genetics, DNA-Binding Proteins genetics, Face abnormalities, Hematologic Diseases genetics, Histone Demethylases genetics, Joint Instability genetics, Neoplasm Proteins genetics, Vestibular Diseases genetics
- Abstract
Kabuki syndrome (KS) is a multiple congenital malformation syndrome which has been described across all ethnic groups. Most KS patients possess two genetic subtypes: KMT2D-associated, autosomal-dominant KS type 1 (KS1; OMIM 147920); and KDM6A-associated, X-linked-dominant KS type 2. Generalized joint hypermobility is one feature of KS, but its exact incidence and pattern is not well described in the literature. As part of our prospective study on the metabolic and growth effect of GH treatment, we assessed children from our Dutch Kabuki cohort who were eligible for growth hormone therapy. We assessed severity and pattern of joint hypermobility, both before and after 24 months of growth hormone replacement therapy. The prevalence of hypermobility was 31% in boys and 14% in girls using the Beighton score and 69% in boys and 57% in girls using the Bulbena score. This varies from the general population where girls are more affected. After 2 years of growth hormone treatment, there was a statistically significant decrease in the presence of joint hypermobility to 6% using the Bulbena score and none with respect to the Beighton score. We hypothesized that this result suggests a direct effect of growth hormone on connective tissue in patients with KS., (© 2018 The Authors. American Journal of Medical Genetics Part A published by Wiley Periodicals, Inc.)
- Published
- 2019
- Full Text
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20. De Novo and Inherited Loss-of-Function Variants in TLK2: Clinical and Genotype-Phenotype Evaluation of a Distinct Neurodevelopmental Disorder.
- Author
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Reijnders MRF, Miller KA, Alvi M, Goos JAC, Lees MM, de Burca A, Henderson A, Kraus A, Mikat B, de Vries BBA, Isidor B, Kerr B, Marcelis C, Schluth-Bolard C, Deshpande C, Ruivenkamp CAL, Wieczorek D, Baralle D, Blair EM, Engels H, Lüdecke HJ, Eason J, Santen GWE, Clayton-Smith J, Chandler K, Tatton-Brown K, Payne K, Helbig K, Radtke K, Nugent KM, Cremer K, Strom TM, Bird LM, Sinnema M, Bitner-Glindzicz M, van Dooren MF, Alders M, Koopmans M, Brick L, Kozenko M, Harline ML, Klaassens M, Steinraths M, Cooper NS, Edery P, Yap P, Terhal PA, van der Spek PJ, Lakeman P, Taylor RL, Littlejohn RO, Pfundt R, Mercimek-Andrews S, Stegmann APA, Kant SG, McLean S, Joss S, Swagemakers SMA, Douzgou S, Wall SA, Küry S, Calpena E, Koelling N, McGowan SJ, Twigg SRF, Mathijssen IMJ, Nellaker C, Brunner HG, and Wilkie AOM
- Subjects
- Adolescent, Adult, Base Sequence, Cell Line, Child, Child, Preschool, Facies, Female, Humans, Infant, Male, RNA, Messenger genetics, RNA, Messenger metabolism, Translocation, Genetic, Young Adult, Genetic Association Studies, Inheritance Patterns genetics, Loss of Function Mutation genetics, Neurodevelopmental Disorders genetics, Protein Kinases genetics
- Abstract
Next-generation sequencing is a powerful tool for the discovery of genes related to neurodevelopmental disorders (NDDs). Here, we report the identification of a distinct syndrome due to de novo or inherited heterozygous mutations in Tousled-like kinase 2 (TLK2) in 38 unrelated individuals and two affected mothers, using whole-exome and whole-genome sequencing technologies, matchmaker databases, and international collaborations. Affected individuals had a consistent phenotype, characterized by mild-borderline neurodevelopmental delay (86%), behavioral disorders (68%), severe gastro-intestinal problems (63%), and facial dysmorphism including blepharophimosis (82%), telecanthus (74%), prominent nasal bridge (68%), broad nasal tip (66%), thin vermilion of the upper lip (62%), and upslanting palpebral fissures (55%). Analysis of cell lines from three affected individuals showed that mutations act through a loss-of-function mechanism in at least two case subjects. Genotype-phenotype analysis and comparison of computationally modeled faces showed that phenotypes of these and other individuals with loss-of-function variants significantly overlapped with phenotypes of individuals with other variant types (missense and C-terminal truncating). This suggests that haploinsufficiency of TLK2 is the most likely underlying disease mechanism, leading to a consistent neurodevelopmental phenotype. This work illustrates the power of international data sharing, by the identification of 40 individuals from 26 different centers in 7 different countries, allowing the identification, clinical delineation, and genotype-phenotype evaluation of a distinct NDD caused by mutations in TLK2., (Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF
21. Versatile vector suite for the extracytoplasmic production and purification of heterologous His-tagged proteins in Lactococcus lactis.
- Author
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Neef J, Milder FJ, Koedijk DG, Klaassens M, Heezius EC, van Strijp JA, Otto A, Becher D, van Dijl JM, and Buist G
- Subjects
- Chromatography, Affinity, Nisin metabolism, Peptide Hydrolases metabolism, Proteolysis, Recombinant Fusion Proteins isolation & purification, Staphylococcus aureus genetics, Transcriptional Activation drug effects, Genetic Vectors, Lactococcus lactis genetics, Lactococcus lactis metabolism, Protein Engineering methods, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism
- Abstract
Recent studies have shown that the Gram-positive bacterium Lactococcus lactis can be exploited for the expression of heterologous proteins; however, a versatile set of vectors suitable for inducible extracellular protein production and subsequent purification of the expressed proteins by immobilized metal affinity chromatography was so far lacking. Here we describe three novel vectors that, respectively, facilitate the nisin-inducible production of N- or C-terminally hexa-histidine (His6)-tagged proteins in L. lactis. One of these vectors also encodes a tobacco etch virus (TEV) protease cleavage site allowing removal of the N-terminal His6-tag from expressed proteins. Successful application of the developed vectors for protein expression, purification and/or functional studies is exemplified with six different cell wall-bound or secreted proteins from Staphylococcus aureus. The results show that secretory production of S. aureus proteins is affected by the position, N- or C-terminal, of the His6-tag. This seems to be due to an influence of the His6-tag on protein stability. Intriguingly, the S. aureus IsdB protein, which is phosphorylated in S. aureus, was also found to be phosphorylated when heterologously produced in L. lactis, albeit not on the same Tyr residue. This implies that this particular post-translational protein modification is to some extent conserved in S. aureus and L. lactis. Altogether, we are confident that the present vector set combined with the L. lactis expression host has the potential to become a very useful tool in optimization of the expression, purification and functional analysis of extracytoplasmic bacterial proteins.
- Published
- 2015
- Full Text
- View/download PDF
22. Experiences of home and institution in a secured nursing home ward in The Netherlands: A participatory intervention study.
- Author
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Klaassens M and Meijering L
- Subjects
- Aged, Caregivers psychology, Delivery of Health Care, Female, Home Care Services, Humans, Interpersonal Relations, Korsakoff Syndrome psychology, Korsakoff Syndrome therapy, Male, Narration, Netherlands, Patient Satisfaction, Patient-Centered Care, Personal Autonomy, Personal Space, Privacy, Self-Control, Attitude to Health, Homes for the Aged, Inpatients psychology, Institutionalization, Nursing Homes
- Abstract
Nursing homes have been criticised for not providing a home for their residents. This article aims to provide insight into (1) the features of home and institution as experienced by residents and caregivers of a secured ward in a nursing home, and (2) how interventions implemented on the ward can contribute to a more home-like environment. For this purpose, a participatory intervention study, involving both caregivers and residents, was carried out. We collected data through qualitative research methods: observations, in-depth interviews and diaries to evaluate the interventions over time. We adopted an informed grounded theory approach, and used conceptualisations of total institutions and home as a theoretical lens. We found that the studied ward had strong characteristics of a total institution, such as batch living, block treatment and limited privacy. To increase the sense of home, interventions were formulated and implemented by the caregivers to increase the residents' autonomy, control and privacy. In this process, caregivers' perceptions and attitudes towards the provision of care shifted from task-oriented to person-centred care. We conclude that it is possible to increase the home-like character of a secured ward by introducing core values of home by means of interventions involving both caregivers and residents., (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
23. Malan syndrome: Sotos-like overgrowth with de novo NFIX sequence variants and deletions in six new patients and a review of the literature.
- Author
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Klaassens M, Morrogh D, Rosser EM, Jaffer F, Vreeburg M, Bok LA, Segboer T, van Belzen M, Quinlivan RM, Kumar A, Hurst JA, and Scott RH
- Subjects
- Child, Preschool, Comparative Genomic Hybridization, Diagnosis, Differential, Facies, Female, Humans, Infant, Male, Sotos Syndrome diagnosis, Sotos Syndrome genetics, Syndrome, Genetic Association Studies, Mutation, NFI Transcription Factors genetics, Phenotype, Sequence Deletion
- Abstract
De novo monoallelic variants in NFIX cause two distinct syndromes. Whole gene deletions, nonsense variants and missense variants affecting the DNA-binding domain have been seen in association with a Sotos-like phenotype that we propose is referred to as Malan syndrome. Frameshift and splice-site variants thought to avoid nonsense-mediated RNA decay have been seen in Marshall-Smith syndrome. We report six additional patients with Malan syndrome and de novo NFIX deletions or sequence variants and review the 20 patients now reported. The phenotype is characterised by moderate postnatal overgrowth and macrocephaly. Median height and head circumference in childhood are 2.0 and 2.3 standard deviations (SD) above the mean, respectively. There is overlap of the facial phenotype with NSD1-positive Sotos syndrome in some cases including a prominent forehead, high anterior hairline, downslanting palpebral fissures and prominent chin. Neonatal feeding difficulties and/or hypotonia have been reported in 30% of patients. Developmental delay/learning disability have been reported in all cases and are typically moderate. Ocular phenotypes are common, including strabismus (65%), nystagmus (25% ) and optic disc pallor/hypoplasia (25%). Other recurrent features include pectus excavatum (40%) and scoliosis (25%). Eight reported patients have a deletion also encompassing CACNA1A, haploinsufficiency of which causes episodic ataxia type 2 or familial hemiplegic migraine. One previous case had episodic ataxia and one case we report has had cyclical vomiting responsive to pizotifen. In individuals with this contiguous gene deletion syndrome, awareness of possible later neurological manifestations is important, although their penetrance is not yet clear.
- Published
- 2015
- Full Text
- View/download PDF
24. New places of remembrance: individual web memorials in the Netherlands.
- Author
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Klaassens M and Bijlsma MJ
- Subjects
- Adult, Ceremonial Behavior, Humans, Netherlands, Social Support, Death, Family psychology, Internet statistics & numerical data
- Abstract
The creation of places of remembrance in virtual space constitutes a new ritual to commemorate the dead. The purpose of this study is to explore for whom individual Web memorials are meaningful places, who are commemorated, and whether they constitute a community of support. We analyzed 181 Dutch Web memorials and conducted content analysis of messages posted in four guestbooks. We found that parents, and in particular mothers, create Web memorials in remembrance of their deceased children. The memorials provide access to a community of social support, consisting primarily of strangers and/or people who have experienced a similar loss.
- Published
- 2014
- Full Text
- View/download PDF
25. Expressions of private mourning in public space: the evolving structure of spontaneous and permanent roadside memorials in The Netherlands.
- Author
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Klaassens M, Groote PD, and Vanclay FM
- Subjects
- Adolescent, Female, Humans, Male, Netherlands, Parents psychology, Accidents, Traffic, Bereavement, Funeral Rites, Symbolism
- Abstract
A visual content analysis of photos of 2176 roadside memorials in The Netherlands was undertaken together with 24 interviews with the people who constructed them to understand how they deal with traumatic death. Friends urgently need to memorialize the deceased and establish spontaneous memorials. They place meaningful objects at the place of death, not necessarily indicating the deceased's identity. In contrast, permanent memorials identify who died and re-embody that person and are primarily established by parents. By transforming the death site into a place of care, parents continue their role as nurturers. Differences in types of memorials are discussed.
- Published
- 2013
- Full Text
- View/download PDF
26. Environmental factors in the etiology of esophageal atresia and congenital diaphragmatic hernia: results of a case-control study.
- Author
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Felix JF, van Dooren MF, Klaassens M, Hop WC, Torfs CP, and Tibboel D
- Subjects
- Adult, Case-Control Studies, Environment, Female, Humans, Infant, Newborn, Male, Pregnancy, Surveys and Questionnaires, Esophageal Atresia etiology, Hernia, Diaphragmatic etiology, Hernias, Diaphragmatic, Congenital
- Abstract
Background: Esophageal atresia with or without tracheoesophageal fistula (EA/TEF) and congenital diaphragmatic hernia (CDH) are severe congenital anomalies. Their etiologies are mostly unknown and are thought to be multifactorial. No specific environmental factors have consistently been described as risk factors., Methods: In a study conducted during the years 2000 to 2004 in a pediatric surgical referral center in the Netherlands, parents of children with EA/TEF or with CDH of the Bochdalek type and parents of a group of children without major birth defects filled out a questionnaire about possible exposure to environmental risk factors during the period from 1 month before conception to the end of the first trimester of pregnancy. Children with chromosomal anomalies were excluded., Results: Questionnaires were returned for 47 out of 64 cases (73%) with EA/TEF, for 63 out of 77 cases (82%) with CDH, and for 202 out of 243 controls (83%). In EA/TEF, maternal age was borderline significantly higher than in controls (32.2 vs. 30.6 years, p = .05). Contact with herbicides or insecticides was associated with EA/TEF in univariate analysis (OR 2.0; 95% CI: 1.0-4.1) and in multivariate analysis, although of borderline significance. In univariate analysis, CDH was significantly associated with maternal use of alcohol (OR 2.9; 95% CI: 1.6-5.2)., Conclusions: We found a significant association between maternal alcohol use around the time of conception and CDH. A possible explanation might be the effect of alcohol on the retinoic acid pathway. An association was found between contact with herbicides or insecticides and EA/TEF., ((c) 2008 Wiley-Liss, Inc.)
- Published
- 2008
- Full Text
- View/download PDF
27. Linking animal models to human congenital diaphragmatic hernia.
- Author
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Beurskens N, Klaassens M, Rottier R, de Klein A, and Tibboel D
- Subjects
- Animals, Gene Expression Regulation, Developmental, Hernia, Diaphragmatic metabolism, Humans, Mice, Mice, Knockout, Retinoids metabolism, Signal Transduction, Diaphragm abnormalities, Disease Models, Animal, Hernia, Diaphragmatic etiology, Hernias, Diaphragmatic, Congenital
- Abstract
Background: Congenital diaphragmatic hernia (CDH) is a major life-threatening malformation, occurring in approximately 1 in 3,000 live births. Over the years, different animal models have been used to gain insight into the etiology of this complex congenital anomaly and to develop treatment strategies. However, to date the pathogenic mechanism is still not understood, and treatment remains difficult because of the associated pulmonary hypoplasia and pulmonary hypertension., Methods: In this review, data available from several animal models will be discussed. The retinoic acid signaling pathway (RA pathway, retinoid pathway) will be addressed as a developmental pathway that is potentially disrupted in the pathogenesis of CDH. Furthermore, genetic factors involved in diaphragm and lung development will be discussed., Conclusions: With this review article, we aim to provide a concise overview of the current most important experimental genetic data available in the field of CDH., (2007 Wiley-Liss, Inc.)
- Published
- 2007
- Full Text
- View/download PDF
28. Genome-wide oligonucleotide-based array comparative genome hybridization analysis of non-isolated congenital diaphragmatic hernia.
- Author
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Scott DA, Klaassens M, Holder AM, Lally KP, Fernandes CJ, Galjaard RJ, Tibboel D, de Klein A, and Lee B
- Subjects
- Chromosome Aberrations, Chromosome Banding, Chromosomes, Human, Pair 14, Chromosomes, Human, Pair 2, Chromosomes, Human, Pair 6, Female, Gene Dosage, Gene Expression Profiling, Genetic Testing, Humans, Male, Genome, Human, Hernia, Diaphragmatic genetics, Hernias, Diaphragmatic, Congenital, Nucleic Acid Hybridization methods, Oligonucleotide Array Sequence Analysis
- Abstract
Non-isolated congenital diaphragmatic hernia (CDH+) is a severe birth defect that is often caused by de novo chromosomal anomalies. In this report, we use genome-wide oligonucleotide-based array comparative genome hybridization (aCGH) followed by rapid real-time quantitative PCR analysis to identify, confirm and map chromosomal anomalies in a cohort of 26 CDH+ patients. One hundred and five putative copy number changes were identified by aCGH in our cohort of CDH+ patients. Sixty-one of these changes (58%) had been previously described in normal controls. Twenty of the remaining 44 changes (45%) were confirmed by quantitative real-time PCR or standard cytogenetic techniques. These changes included de novo chromosomal abnormalities in five of the 26 patients (19%), two of whom had previously normal G-banded chromosome analyses. Data from these patients provide evidence for the existence of CDH-related genes on chromosomes 2q37, 6p22-25 and 14q, and refine the CDH minimal deleted region on 15q26 to an interval that contains COUP-TFII and only eight other known genes. Although COUP-TFII is likely to play a role in the development of CDH in patients with 15q26 deletions, we did not find COUP-TFII mutations in 73 CDH samples. We conclude that the combination of oligonucleotide-based aCGH and quantitative real-time PCR is an effective method of identifying, confirming and mapping clinically relevant copy number changes in patients with CDH+. This method is more sensitive than G-banded chromosome analysis and may find wide application in screening patients with congenital anomalies.
- Published
- 2007
- Full Text
- View/download PDF
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