27 results on '"Mesut Sahin"'
Search Results
2. Sensorimotor content of multi-unit activity recorded in the paramedian lobule of the cerebellum using carbon fiber microelectrode arrays
- Author
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Esma Cetinkaya, Eric J. Lang, and Mesut Sahin
- Subjects
cerebellar electrophysiology ,carbon fiber electrodes ,reaching behavior ,local field potentials ,chronic neural recording ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The cerebellum takes in a great deal of sensory information from the periphery and descending signals from the cerebral cortices. It has been debated whether the paramedian lobule (PML) in the rat and its paravermal regions that project to the interpositus nucleus (IPN) are primarily involved in motor execution or motor planning. Studies that have relied on single spike recordings in behaving animals have led to conflicting conclusions regarding this issue. In this study, we tried a different approach and investigated the correlation of field potentials and multi-unit signals recorded with multi-electrode arrays from the PML cortex along with the forelimb electromyography (EMG) signals in rats during behavior. Linear regression was performed to predict the EMG signal envelopes using the PML activity for various time shifts (±25, ±50, ±100, and ± 400 ms) between the two signals to determine a causal relation. The highest correlations (~0.5 on average) between the neural and EMG envelopes were observed for zero and small (±25 ms) time shifts and decreased with larger time shifts in both directions, suggesting that paravermal PML is involved both in processing of sensory signals and motor execution in the context of forelimb reaching behavior. EMG envelopes were predicted with higher success rates when neural signals from multiple phases of the behavior were utilized for regression. The forelimb extension phase was the most difficult to predict while the releasing of the bar phase prediction was the most successful. The high frequency (>300 Hz) components of the neural signal, reflecting multi-unit activity, had a higher contribution to the EMG prediction than did the lower frequency components, corresponding to local field potentials. The results of this study suggest that the paravermal PML in the rat cerebellum is primarily involved in the execution of forelimb movements rather than the planning aspect and that the PML is more active at the initiation and termination of the behavior, rather than the progression.
- Published
- 2024
- Full Text
- View/download PDF
3. Transsynaptic entrainment of cerebellar nuclear cells by alternating currents in a frequency dependent manner
- Author
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Qi Kang, Eric J. Lang, and Mesut Sahin
- Subjects
transcranial AC stimulation (tACS) ,tDCS ,tES ,cerebellum ,Purkinje cell synchrony ,neuromodulation ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Transcranial alternating current stimulation (tACS) is a non-invasive neuromodulation technique that is being tested clinically for treatment of a variety of neural disorders. Animal studies investigating the underlying mechanisms of tACS are scarce, and nearly absent in the cerebellum. In the present study, we applied 10–400 Hz alternating currents (AC) to the cerebellar cortex in ketamine/xylazine anesthetized rats. The spiking activity of cerebellar nuclear (CN) cells was transsynaptically entrained to the frequency of AC stimulation in an intensity and frequency-dependent manner. Interestingly, there was a tuning curve for modulation where the frequencies in the midrange (100 and 150 Hz) were more effective, although the stimulation frequency for maximum modulation differed for each CN cell with slight dependence on the stimulation amplitude. CN spikes were entrained with latencies of a few milliseconds with respect to the AC stimulation cycle. These short latencies and that the transsynaptic modulation of the CN cells can occur at such high frequencies strongly suggests that PC simple spike synchrony at millisecond time scales is the underlying mechanism for CN cell entrainment. These results show that subthreshold AC stimulation can induce such PC spike synchrony without resorting to supra-threshold pulse stimulation for precise timing. Transsynaptic entrainment of deep CN cells via cortical stimulation could help keep stimulation currents within safety limits in tACS applications, allowing development of tACS as an alternative treatment to deep cerebellar stimulation. Our results also provide a possible explanation for human trials of cerebellar stimulation where the functional impacts of tACS were frequency dependent.
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- 2023
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4. Modulation of cerebellar cortical, cerebellar nuclear and vestibular nuclear activity using alternating electric currents
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Billur Avlar, Ramia Rahman, Sai Vendidandi, Esma Cetinkaya, Ahmet S. Asan, Mesut Sahin, and Eric J. Lang
- Subjects
transcranial stimulation ,olivocerebellar system ,cerebellar nuclei ,Purkinje cell ,electric fields in neural tissue ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
IntroductionCerebellar transcranial alternating current stimulation (ctACS) has shown promise as a therapeutic modality for treating a variety of neurological disorders, and for affecting normal learning processes. Yet, little is known about how electric fields induced by applied currents affect cerebellar activity in the mammalian cerebellum under in vivo conditions.MethodsAlternating current (AC) stimulation with frequencies from 0.5 to 20 Hz was applied to the surface of the cerebellum in anesthetized rats. Extracellular recordings were obtained from Purkinje cells (PC), cerebellar and vestibular nuclear neurons, and other cerebellar cortical neurons.Results and discussionAC stimulation modulated the activity of all classes of neurons. Cerebellar and vestibular nuclear neurons most often showed increased spike activity during the negative phase of the AC stimulation. Purkinje cell simple spike activity was also increased during the negative phase at most locations, except for the cortex directly below the stimulus electrode, where activity was most often increased during the positive phase of the AC cycle. Other cortical neurons showed a more mixed, generally weaker pattern of modulation. The patterns of Purkinje cell responses suggest that AC stimulation induces a complex electrical field with changes in amplitude and orientation between local regions that may reflect the folding of the cerebellar cortex. Direct measurements of the induced electric field show that it deviates significantly from the theoretically predicted radial field for an isotropic, homogeneous medium, in both its orientation and magnitude. These results have relevance for models of the electric field induced in the cerebellum by AC stimulation.
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- 2023
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5. The size of via holes influence the amplitude and selectivity of neural signals in Micro-ECoG arrays
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Manan Sethia and Mesut Sahin
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Multi-electrode arrays ,Perforation holes ,Channel crosstalk ,Biotechnology ,TP248.13-248.65 ,Medical technology ,R855-855.5 - Abstract
Abstract Background Electrocorticography (ECoG) arrays are commonly used to record the brain activity both in animal and human subjects. There is a lack of guidelines in the literature as to how the array geometry, particularly the via holes in the substrate, affects the recorded signals. A finite element (FE) model was developed to simulate the electric field generated by neurons located at different depths in the rat brain cortex and a micro ECoG array (μECoG) was placed on the pia surface for recording the neural signal. The array design chosen was a typical array of 8 × 8 circular (100 μm in diam.) contacts with 500 μm pitch. The size of the via holes between the recording contacts was varied to see the effect. Results The results showed that recorded signal amplitudes were reduced if the substrate was smaller than about four times the depth of the neuron in the gray matter. The signal amplitude profiles had dips around the via holes and the amplitudes were also lower at the contact sites as compared to the design without the holes; an effect that increased with the hole size. Another noteworthy result is that the spatial selectivity of the multi-contact recordings could be improved or reduced by the selection of the via hole sizes, and the effect depended on the distance between the neuron pair targeted for selective recording and its depth. Conclusions The results suggest that the via-hole size clearly affects the recorded neural signal amplitudes and it can be leveraged as a parameter to reduce the inter-channel correlation and thus maximize the information content of neural signals with μECoG arrays.
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- 2022
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6. Entrainment of cerebellar Purkinje cell spiking activity using pulsed ultrasound stimulation
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Ahmet S. Asan, Qi Kang, Ömer Oralkan, and Mesut Sahin
- Subjects
Focused ultrasound stimulation ,Neuromodulation ,Cerebellar cortex ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Background: Focused ultrasound (FUS) has excellent characteristics over other non-invasive stimulation methods in terms of spatial resolution and steering capability of the target. FUS has not been tested in the cerebellar cortex and cellular effects of FUS are not fully understood. Objective/hypothesis: To investigate how the activity of cerebellar Purkinje cells (PCs) is modulated by FUS with varying pulse durations and pulse repetition frequencies. Methods: A glass microelectrode was inserted into the cerebellar vermis lobule 6 from the dorsal side to extracellularly record single unit activity of the PCs in anesthetized rats. Ultrasonic stimulation (500 kHz) was applied through a coupling cone, filled with degassed water, from the posterior side to target the recording area with varying pulse durations and frequencies. Results: Simple spike (SS) activity of PCs was entrained by the FUS pattern where the probability of spike occurrences peaked at around 1 ms following the onset of the stimulus regardless of its duration (0.5, 1, or 2 ms). The level of entrainment was stronger with shorter pulse durations at 50-Hz pulse repetition frequency (PRF), however, peri-event histograms spread wider and the peaks delayed slightly at 100-Hz PRF, suggesting involvement of a long-lasting inhibitory mechanism. There was no significant difference between the average firing rates in the baseline and stimulation periods. Conclusion: FUS can entrain spiking activity of single cells on a spike-by-spike basis as demonstrated here in the rat cerebellar cortex. The observed modulation potentially results from the aggregate of excitatory and inhibitory effects of FUS on the entire cortical network rather than on the PCs alone.
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- 2021
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7. Entrainment of cerebellar purkinje cells with directional AC electric fields in anesthetized rats
- Author
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Ahmet S. Asan, Eric J. Lang, and Mesut Sahin
- Subjects
Electrical stimulation ,Cerebellar modulation ,Spike entrainment ,Transcranial direct current stimulation (tDCS) ,Transcranial alternating current stimulation (tACS) ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Background: Transcranial electrical stimulation (tES) shows promise to treat neurological disorders. Knowledge of how the orthogonal components of the electric field (E-field) alter neuronal activity is required for strategic placement of transcranial electrodes. Yet, essentially no information exists on this relationship for mammalian cerebellum in vivo, despite the cerebellum being a target for clinical tES studies. Objective: To characterize how cerebellar Purkinje cell (PC) activity varies with the intensity, frequency, and direction of applied AC and DC E-fields. Methods: Extracellular recordings were obtained from vermis lobule 7 PCs in anesthetized rats. AC (2–100 Hz) or DC E-fields were generated in a range of intensities (0.75–30 mV/mm) in three orthogonal directions. Field-evoked PC simple spike activity was characterized in terms of firing rate modulation and phase-locking as a function of these parameters. t-tests were used for statistical comparisons. Results: The effect of applied E-fields was direction and intensity dependent, with rostrocaudally directed fields causing stronger modulations than dorsoventral fields and mediolaterally directed ones causing little to no effect, on average. The directionality dependent modulation suggests that PC is the primary cell type affected the most by electric stimulation, and this effect was probably given rise by a large dendritic tree and a soma. AC stimulation entrained activity in a frequency dependent manner, with stronger phase-locking to the stimulus cycle at higher frequencies. DC fields produced a modulation consisting of strong transients at current onset and offset with an intervening plateau. Conclusion: Orientation of the exogenous E-field critically determines the modulation depth of cerebellar cortical output. With properly oriented fields, PC simple spike activity can strongly be entrained by AC fields, overriding the spontaneous firing pattern.
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- 2020
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8. Electrical fields induced inside the rat brain with skin, skull, and dural placements of the current injection electrode.
- Author
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Ahmet S Asan, Sinan Gok, and Mesut Sahin
- Subjects
Medicine ,Science - Abstract
Transcranial electrical stimulation (tES) is rapidly becoming an indispensable clinical tool with its different forms. Animal data are crucially needed for better understanding of the underlying mechanisms of tES. For reproducibility of results in animal experiments, the electric fields (E-Fields) inside the brain parenchyma induced by the injected currents need to be predicted accurately. In this study, we measured the electrical fields in the rat brain perpendicular to the brain surface, i.e. vertical electric field (VE-field), when the stimulation electrode was placed over the skin, skull, or dura mater through a craniotomy hole. The E-field attenuation through the skin was a few times larger than that of the skull and the presence of skin substantially reduced the VE-field peak at the cortical surface near the electrode. The VE-field declined much quicker in the gray matter underneath the pial surface than it did in the white matter, and thus the large VE-fields were contained mostly in the gray matter. The transition at the gray/white matter border caused a significant peak in the VE-field, as well as at other local inhomogeneties. A conductivity value of 0.57 S/m is predicted as a global value for the whole brain by matching our VE-field measurements to the field profile given by analytical equations for volume conductors. Finally, insertion of the current return electrode into the shoulder, submandibular, and hind leg muscles had virtually no effects on the measured E-field amplitudes in the cortex underneath the epidural electrodes.
- Published
- 2019
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9. Convolutional Networks Outperform Linear Decoders in Predicting EMG From Spinal Cord Signals
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Yi Guo, Sinan Gok, and Mesut Sahin
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machine learning ,artificial neural network ,convolutional neural network ,corticospinal tract ,microelectrode array ,signal processing ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Advanced algorithms are required to reveal the complex relations between neural and behavioral data. In this study, forelimb electromyography (EMG) signals were reconstructed from multi-unit neural signals recorded with multiple electrode arrays (MEAs) from the corticospinal tract (CST) in rats. A six-layer convolutional neural network (CNN) was compared with linear decoders for predicting the EMG signal. The network contained three session-dependent Rectified Linear Unit (ReLU) feature layers and three Gamma function layers were shared between sessions. Coefficient of determination (R2) values over 0.2 and correlations over 0.5 were achieved for reconstruction within individual sessions in multiple animals, even though the forelimb position was unconstrained for most of the behavior duration. The CNN performed visibily better than the linear decoders and model responses outlasted the activation duration of the rat neuromuscular system. These findings suggest that the CNN model implicitly predicted short-term dynamics of skilled forelimb movements from neural signals. These results are encouraging that similar problems in neural signal processing may be solved using variants of CNNs defined with simple analytical functions. Low powered firmware can be developed to house these CNN solutions in real-time applications.
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- 2018
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10. Characterization of neural activity recorded from the descending tracts of the rat spinal cord
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Abhishek Prasad and Mesut Sahin
- Subjects
brain-computer ,neural interface ,rubrospinal tract ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
A multi-electrode array (MEA) was implanted in the dorsolateral funiculus of the cervical spinal cord to record descending information during behavior in freely moving rats. Neural signals were characterized in terms of frequency and information content. Frequency analysis revealed components both at the range of local field potentials and multi-unit activity. Coherence between channels decreased steadily with inter-contact distance and frequency suggesting greater spatial selectivity for multi-unit activity compared to local field potentials. Principal component analysis (PCA) extracted multiple channels of neural activity with patterns that correlated to the behavior, indicating multiple dimensionality of the signals. Two different behaviors involving the forelimbs, face cleaning and food reaching, generated neural signals through distinctly different combination of neural channels, which suggested that these two behaviors could readily be differentiated from recordings. This preliminary data demonstrated that descending spinal cord signals recorded with MEAs can be used to extract multiple channels of command control information and potentially be utilized as a means of communication in high level spinal cord injury subjects.
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- 2010
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11. Active C4 Electrodes for Local Field Potential Recording Applications
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Lu Wang, David Freedman, Mesut Sahin, M. Selim Ünlü, and Ronald Knepper
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3D electrodes ,C4 ,CMOS ,extracellular ,in vitro ,in vivo ,MEA ,neural sensors ,Chemical technology ,TP1-1185 - Abstract
Extracellular neural recording, with multi-electrode arrays (MEAs), is a powerful method used to study neural function at the network level. However, in a high density array, it can be costly and time consuming to integrate the active circuit with the expensive electrodes. In this paper, we present a 4 mm × 4 mm neural recording integrated circuit (IC) chip, utilizing IBM C4 bumps as recording electrodes, which enable a seamless active chip and electrode integration. The IC chip was designed and fabricated in a 0.13 μm BiCMOS process for both in vitro and in vivo applications. It has an input-referred noise of 4.6 μV rms for the bandwidth of 10 Hz to 10 kHz and a power dissipation of 11.25 mW at 2.5 V, or 43.9 μW per input channel. This prototype is scalable for implementing larger number and higher density electrode arrays. To validate the functionality of the chip, electrical testing results and acute in vivo recordings from a rat barrel cortex are presented.
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- 2016
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12. Entrainment of cerebellar purkinje cells with directional AC electric fields in anesthetized rats
- Author
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Mesut Sahin, Eric J. Lang, and Ahmet S. Asan
- Subjects
Male ,Cerebellum ,Biophysics ,Action Potentials ,Cerebellar Purkinje cell ,Stimulation ,Stimulus (physiology) ,Transcranial Direct Current Stimulation ,Article ,050105 experimental psychology ,lcsh:RC321-571 ,Rats, Sprague-Dawley ,Amplitude modulation ,Cerebellar modulation ,Purkinje Cells ,03 medical and health sciences ,0302 clinical medicine ,Electric field ,medicine ,Animals ,Premovement neuronal activity ,0501 psychology and cognitive sciences ,Spike entrainment ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,Neurons ,Physics ,Anesthetics, Dissociative ,General Neuroscience ,05 social sciences ,Rats ,Transcranial direct current stimulation (tDCS) ,medicine.anatomical_structure ,Electrical stimulation ,Anesthetics, Inhalation ,Soma ,Transcranial alternating current stimulation (tACS) ,Neurology (clinical) ,030217 neurology & neurosurgery - Abstract
Background Transcranial electrical stimulation (tES) shows promise to treat neurological disorders. Knowledge of how the orthogonal components of the electric field (E-field) alter neuronal activity is required for strategic placement of transcranial electrodes. Yet, essentially no information exists on this relationship for mammalian cerebellum in vivo, despite the cerebellum being a target for clinical tES studies. Objective To characterize how cerebellar Purkinje cell (PC) activity varies with the intensity, frequency, and direction of applied AC and DC E-fields. Methods Extracellular recordings were obtained from vermis lobule 7 PCs in anesthetized rats. AC (2–100 Hz) or DC E-fields were generated in a range of intensities (0.75–30 mV/mm) in three orthogonal directions. Field-evoked PC simple spike activity was characterized in terms of firing rate modulation and phase-locking as a function of these parameters. t-tests were used for statistical comparisons. Results The effect of applied E-fields was direction and intensity dependent, with rostrocaudally directed fields causing stronger modulations than dorsoventral fields and mediolaterally directed ones causing little to no effect, on average. The directionality dependent modulation suggests that PC is the primary cell type affected the most by electric stimulation, and this effect was probably given rise by a large dendritic tree and a soma. AC stimulation entrained activity in a frequency dependent manner, with stronger phase-locking to the stimulus cycle at higher frequencies. DC fields produced a modulation consisting of strong transients at current onset and offset with an intervening plateau. Conclusion Orientation of the exogenous E-field critically determines the modulation depth of cerebellar cortical output. With properly oriented fields, PC simple spike activity can strongly be entrained by AC fields, overriding the spontaneous firing pattern.
- Published
- 2020
13. Instrumentation Handbook for Biomedical Engineers
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Mesut Sahin and Mesut Sahin
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- Biological apparatus and supplies, Biomedical engineering, Medical instruments and apparatus
- Abstract
The book fills a void as a textbook with hands-on laboratory exercises designed for biomedical engineering undergraduates in their senior year or the first year of graduate studies specializing in electrical aspects of bioinstrumentation. Each laboratory exercise concentrates on measuring a biophysical or biomedical entity, such as force, blood pressure, temperature, heart rate, respiratory rate, etc., and guides students though all the way from sensor level to data acquisition and analysis on the computer. The book distinguishes itself from others by providing electrical circuits and other measurement setups that have been tested by the authors while teaching undergraduate classes at their home institute over many years. Key Features:• Hands-on laboratory exercises on measurements of biophysical and biomedical variables• Each laboratory exercise is complete by itself and they can be covered in any sequence desired by the instructor during the semester• Electronic equipment and supplies required are typical for biomedical engineering departments • Data collected by undergraduate students and data analysis results are provided as samples• Additional information and references are included for preparing a report or further reading at the end of each chapterStudents using this book are expected to have basic knowledge of electrical circuits and troubleshooting. Practical information on circuit components, basic laboratory equipment, and circuit troubleshooting is also provided in the first chapter of the book.
- Published
- 2021
14. Active C4 Electrodes for Local Field Potential Recording Applications
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Ronald W. Knepper, Mesut Sahin, M. Selim Ünlü, David S. Freedman, and Lu Wang
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extracellular ,Action Potentials ,02 engineering and technology ,Integrated circuit ,Hardware_PERFORMANCEANDRELIABILITY ,lcsh:Chemical technology ,Biochemistry ,Noise (electronics) ,Article ,Analytical Chemistry ,law.invention ,03 medical and health sciences ,Cerebellar Cortex ,0302 clinical medicine ,law ,0202 electrical engineering, electronic engineering, information engineering ,Hardware_INTEGRATEDCIRCUITS ,Animals ,lcsh:TP1-1185 ,Electrical and Electronic Engineering ,neural sensors ,Instrumentation ,C4 ,Neurons ,Amplifiers, Electronic ,Chemistry ,business.industry ,MEA ,020208 electrical & electronic engineering ,Bandwidth (signal processing) ,CMOS ,Electrical engineering ,in vitro ,Chip ,Atomic and Molecular Physics, and Optics ,3D electrodes ,Rats ,in vivo ,Microelectrode ,Cerebellar cortex ,Electrode ,Nerve Net ,business ,Microelectrodes ,030217 neurology & neurosurgery - Abstract
Extracellular neural recording, with multi-electrode arrays (MEAs), is a powerful method used to study neural function at the network level. However, in a high density array, it can be costly and time consuming to integrate the active circuit with the expensive electrodes. In this paper, we present a 4 mm × 4 mm neural recording integrated circuit (IC) chip, utilizing IBM C4 bumps as recording electrodes, which enable a seamless active chip and electrode integration. The IC chip was designed and fabricated in a 0.13 μm BiCMOS process for both in vitro and in vivo applications. It has an input-referred noise of 4.6 μV rms for the bandwidth of 10 Hz to 10 kHz and a power dissipation of 11.25 mW at 2.5 V, or 43.9 μW per input channel. This prototype is scalable for implementing larger number and higher density electrode arrays. To validate the functionality of the chip, electrical testing results and acute in vivo recordings from a rat barrel cortex are presented.
- Published
- 2016
15. Encoding of forelimb forces by corticospinal tract activity in the rat
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Sergei V. Adamovich, Mesut Sahin, Richard Foulds, and Yi Guo
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Principle Component Analysis (PCA) ,corticospinal tract ,Computer science ,Isometric exercise ,lcsh:RC321-571 ,03 medical and health sciences ,0302 clinical medicine ,Encoding (memory) ,medicine ,Original Research Article ,brain computer interfaces ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,030304 developmental biology ,Brain–computer interface ,Haptic technology ,0303 health sciences ,General Neuroscience ,Motor control ,Spinal cord ,time-frequency analysis ,medicine.anatomical_structure ,Corticospinal tract ,Haptic Feedback ,Forelimb ,Neuroscience ,030217 neurology & neurosurgery - Abstract
In search of a solution to the long standing problems encountered in traditional brain computer interfaces (BCI), the lateral descending tracts of the spinal cord present an alternative site for taping into the volitional motor signals. Due to the convergence of the cortical outputs into a final common pathway in the descending tracts of the spinal cord, neural interfaces with the spinal cord can potentially acquire signals richer with volitional information in a smaller anatomical region. The main objective of this study was to evaluate the feasibility of extracting motor control signals from the corticospinal tract (CST) of the rat spinal cord. Flexible substrate, multi-electrode arrays (MEA) were implanted in the CST of rats trained for a lever pressing task. This novel use of flexible substrate MEAs allowed recording of CST activity in behaving animals for up to three weeks with the current implantation technique. Time-frequency and principal component analyses (PCA) were applied to the neural signals to reconstruct isometric forelimb forces. Computed regression coefficients were then used to predict isometric forces in additional trials. The correlation between measured and predicted forces in the vertical direction averaged across six animals was 0.67 and R-squared value was 0.44. Force regression in the horizontal directions was less successful, possibly due to the small amplitude of forces. Neural signals above and near the high gamma band made the largest contributions to prediction of forces. The results of this study support the feasibility of a spinal cord computer interface (SCCI) for generation of command signals in paralyzed individuals.
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- 2014
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16. Improved selectivity from a wavelength addressable device for wireless stimulation of neural tissue
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M. Selim Ünlü, Ekmel Ozbay, David S. Freedman, Mutlu Gokkavas, Elif Seymour, Mesut Sahin, and Özbay, Ekmel
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Materials science ,Biomedical Engineering ,Biophysics ,Neuroscience (miscellaneous) ,02 engineering and technology ,Addressability ,03 medical and health sciences ,0302 clinical medicine ,Neural prostheses ,addressable stimulators ,Wireless ,Original Research Article ,Microscale chemistry ,Optically powered ,optical neural stimulation ,business.industry ,Neural Prosthesis ,Floating micro electrodes ,Optical neural stimulation ,Heterojunction ,021001 nanoscience & nanotechnology ,floating micro electrodes ,Light intensity ,Wavelength ,wireless ,Electrode ,Optoelectronics ,neural prostheses ,Addressable stimulators ,0210 nano-technology ,business ,optically powered ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Electrical neural stimulation with micro electrodes is a promising technique for restoring lost functions in the central nervous system as a result of injury or disease. One of the problems related to current neural stimulators is the tissue response due to the connecting wires and the presence of a rigid electrode inside soft neural tissue. We have developed a novel, optically activated, microscale photovoltaic neurostimulator based on a custom layered compound semiconductor heterostructure that is both wireless and has a comparatively small volume (
- Published
- 2014
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17. Extensions of Toric Varieties
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Mesut Sahin
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Property (philosophy) ,Complete intersection ,Commutative Algebra (math.AC) ,14M25, 13D40, 14M10, 13D02 ,Theoretical Computer Science ,Combinatorics ,symbols.namesake ,Mathematics - Algebraic Geometry ,FOS: Mathematics ,Discrete Mathematics and Combinatorics ,Mathematics - Combinatorics ,Algebraic Geometry (math.AG) ,Mathematics ,Hilbert series and Hilbert polynomial ,Conjecture ,Mathematics::Commutative Algebra ,Applied Mathematics ,Tangent cone ,Local ring ,Toric variety ,Extension (predicate logic) ,Mathematics - Commutative Algebra ,Computational Theory and Mathematics ,symbols ,Combinatorics (math.CO) ,Geometry and Topology - Abstract
In this paper, we introduce the notion of "extension" of a toric variety and study its fundamental properties. This gives rise to infinitely many toric varieties with a special property, such as being set theoretic complete intersection or arithmetically Cohen-Macaulay (Gorenstein) and having a Cohen-Macaulay tangent cone or a local ring with non-decreasing Hilbert function, from just one single example with the same property, verifying Rossi's conjecture for larger classes and extending some results appeared in literature., 8 pages
- Published
- 2010
18. NIR Light Penetration Depth in the Rat Peripheral Nerve and Brain Cortex
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Ammar Abdo and Mesut Sahin
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Materials science ,Light ,Infrared Rays ,Brain mapping ,Article ,White matter ,Rats, Sprague-Dawley ,Peripheral Nervous System ,medicine ,Animals ,Penetration depth ,Cerebral Cortex ,Neurons ,Brain Mapping ,Spectroscopy, Near-Infrared ,Near-infrared spectroscopy ,Brain ,Human brain ,Anatomy ,Equipment Design ,Sciatic Nerve ,Rats ,medicine.anatomical_structure ,Cerebral cortex ,Peripheral nervous system ,Sciatic nerve ,Biomedical engineering - Abstract
Near infrared (NIR) light energy has been used in medical applications both for diagnostic and treatment purposes. A priory knowledge of optical tissue properties is necessary in these applications; not only of human but also in animals for testing of devices. However, published data on the optical properties of neural tissue in rodents are rare. The aim of this study was to measure the penetration depth of light into the rat peripheral nerve and brain cortex at NIR wavelengths. Penetration depth was calculated from measurements of transmitted light for various thicknesses of the neural tissue. We found the penetration depth in the rat sciatic nerve to be 0.35plusmn0.023 mm and in the white matter 0.35plusmn0.026 mm. The penetration depth of the gray matter was 0.41plusmn0.029 mm. Compared to the data reported in literature for the human brain, the rat peripheral and the brain cortex attenuate the NIR light much more strongly.
- Published
- 2007
19. Multi-Channel Recordings of the Motor Activity From the Spinal Cord of Behaving Rats
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Mesut Sahin and Abhishek Prasad
- Subjects
Male ,Pyramidal tracts ,Elbow ,Pyramidal Tracts ,Action Potentials ,Sensory system ,Temporal correlation ,Neurophysiology ,Motor Activity ,Spinal cord ,Evoked Potentials, Motor ,Efferent Pathways ,Article ,Rats ,medicine.anatomical_structure ,Spinal Cord ,medicine ,Animals ,Rats, Long-Evans ,Motor activity ,Psychology ,Neuroscience ,Rubrospinal tract ,Locomotion - Abstract
The objective of this study was to extract voluntary motor signals from the rubrospinal tract in behaving rats and study the correlation between these volitional signals and the elbow movements. Multi-contact silicone substrate surface electrodes were implanted chronically at the cervical C5–C6 and C6–C7 levels of the spinal cord. Recordings were made during face cleaning by the animal as this task involves cyclic movements of the forelimbs and does not require any training. Temporal correlation was performed between the recordings of the proximal pair and the distal pair of contacts within a sliding window to determine whether the signals were sensory or motor. Linear regression technique was used to reconstruct the arm movement from the rectified-integrated version of the neural signals. The preliminary data show that motor signals can be successfully recorded from the cervical region of the spinal cord in behaving rats and reconstruction of elbow movements from the neural signals is feasible using these non-penetrating surface electrodes.
- Published
- 2006
20. Charge Injection Capacity of TiN Electrodes for an Extended Voltage Range
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Tosha Shah, Mustafa Patan, and Mesut Sahin
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Materials science ,Static Electricity ,chemistry.chemical_element ,Article ,Cathodic protection ,law.invention ,Electromagnetic Fields ,law ,Electric Impedance ,Titanium ,business.industry ,Electrical engineering ,Biasing ,Equipment Design ,Electric Stimulation ,Electrodes, Implanted ,Equipment Failure Analysis ,Capacitor ,Microelectrode ,chemistry ,Electrode ,Optoelectronics ,Tin ,business ,Current density ,Microelectrodes ,Voltage - Abstract
Many applications of neural stimulation demand a high current density from the electrodes used for stimulus delivery. New materials have been searched that can provide such large current and charge densities where the traditional noble metal and capacitor electrodes are inadequate. Titanium nitride, which has been used in cardiac pacemaker leads for many years, is one of these materials recently considered for neural stimulation. In this short report, we investigated the charge injection capacity of TiN electrodes for an extended range of cathodic voltages. The injected charge increased first slowly as a function of the electrode voltage, and then at a faster rate beyond -1.6 V. The maximum charge was 4.45 mC/cm(2) (n=6) for a cathodic voltage peak of -3.0 V and a bias voltage of -0.8 V. There was no evidence of bubble generation under microscopic observation. The unrecoverable charges remained under 7% of the total injected charge for the largest cathodic voltage tested. These large values of charge injection capacity and relatively small unrecoverable charges warrant further investigation of the charge injection mechanism in TiN interfaces at this extended range of electrode voltages.
- Published
- 2006
21. Can motor volition be extracted from the spinal cord?
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Abhishek Prasad and Mesut Sahin
- Subjects
Male ,Volition ,medicine.medical_specialty ,Health Informatics ,Signal ,Rubrospinal ,Efferent Pathways ,lcsh:RC321-571 ,03 medical and health sciences ,User-Computer Interface ,0302 clinical medicine ,Physical medicine and rehabilitation ,Forelimb ,medicine ,Animals ,Rats, Long-Evans ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,Spinal cord injury ,Spinal Cord Injuries ,030304 developmental biology ,Brain–computer interface ,0303 health sciences ,Descending tracts ,Research ,Rehabilitation ,Biomechanics ,Motor control ,Spinal cord ,medicine.disease ,Brain-computer ,Biomechanical Phenomena ,Electrodes, Implanted ,Rats ,Brain-machine ,medicine.anatomical_structure ,Spinal Cord ,Neuron ,Psychology ,Neural interface ,Neuroscience ,Microelectrodes ,030217 neurology & neurosurgery - Abstract
Background Spinal cord injury (SCI) results in the partial or complete loss of movement and sensation below the level of injury. In individuals with cervical level SCI, there is a great need for voluntary command generation for environmental control, self-mobility, or computer access to improve their independence and quality of life. Brain-computer interfacing is one way of generating these voluntary command signals. As an alternative, this study investigates the feasibility of utilizing descending signals in the dorsolateral spinal cord tracts above the point of injury as a means of generating volitional motor control signals. Methods In this work, adult male rats were implanted with a 15-channel microelectrode array (MEA) in the dorsolateral funiculus of the cervical spinal cord to record multi-unit activity from the descending pathways while the animals performed a reach-to-grasp task. Mean signal amplitudes and signal-to-noise ratios during the behavior was monitored and quantified for recording periods up to 3 months post-implant. One-way analysis of variance (ANOVA) and Tukey’s post-hoc analysis was used to investigate signal amplitude stability during the study period. Multiple linear regression was employed to reconstruct the forelimb kinematics, i.e. the hand position, elbow angle, and hand velocity from the spinal cord signals. Results The percentage of electrodes with stable signal amplitudes (p-value 2 > 0.7 using tap-delayed principal components of the spinal cord signals. Conclusions This study demonstrated that chronic recordings up to 3-months can be made from the descending tracts of the rat spinal cord with relatively small changes in signal characteristics over time and that the forelimb kinematics can be reconstructed with the recorded signals. Multi-unit recording technique may prove to be a viable alternative to single neuron recording methods for reading the information encoded by neuronal populations in the spinal cord.
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- 2012
22. Corticospinal signals recorded with MEAs can predict the volitional forearm forces in rats.
- Author
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Guo, Yi, Mesut, Sahin, Foulds, Richard A., and Adamovich, Sergei V.
- Published
- 2013
- Full Text
- View/download PDF
23. Gluing and Hilbert functions of monomial curves.
- Author
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Feza Arslan, Pinar Mete, and Mesut Sahin
- Subjects
CHARACTERISTIC functions ,CURVES ,SEMIGROUP algebras ,LOCAL rings (Algebra) ,GRADED rings ,COHEN-Macaulay rings ,GORENSTEIN rings - Abstract
In this article, by using the technique of gluing semigroups, we give infinitely many families of 1-dimensional local rings with non-decreasing Hilbert functions. More significantly, these are local rings whose associated graded rings are not necessarily Cohen-Macaulay. In this sense, we give an effective technique for constructing large families of 1-dimensional Gorenstein local rings associated to monomial curves, which support Rossi's conjecture saying that every Gorenstein local ring has a non-decreasing Hilbert function. [ABSTRACT FROM AUTHOR]
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- 2008
- Full Text
- View/download PDF
24. Information Capacity of the Corticospinal Tract Recordings as a Neural Interface.
- Author
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Mesut Sahin
- Abstract
Recording the motor output of the central nervous system from the cervical spinal cord was investigated as a method of generating voluntary command signals, potentially to be used in quadriplegic individuals. Corticospinal volleys evoked by motor cortex stimulation were recorded from the spinal cord surface with multicontact electrodes in anesthetized cats. The multicontact recordings were analyzed for their information-carrying capacity as a neural interface. Neural signals resulting from the stimulation of various points in the motor cortex were considered as symbols of an alphabet that were sent through a discrete information channel. The information capacity of this channel at the thermal noise level of the electrode contacts was calculated. The maximum information rate was 1.57 bits in a trial for a 4-symbol alphabet. The background noise that reduces the information rate to 50% of its maximum theoretical value was defined as the half-bitratenoisetolerance (HBR-NoiseTol) and used as a measure of symbol distinguishability. The HBR-NoiseTol for all trials on average was 24 ± 12%, 18 ± 10%, and 15 ± 9% for interfaces with 2-, 3-, and 4-symbol alphabets (n = 11 trials). The average peak-to-peak amplitude of the neural volleys was 13.5 ± 6.7 μV (n = 11). These results suggest that the corticospinal signals can be recorded with spatial selectivity from the spinal cord surface and thus warrant further investigation of their potential use for a spinal cordcomputer interface. [ABSTRACT FROM AUTHOR]
- Published
- 2004
25. Selective Stimulation of the Canine Hypoglossal Nerve Using a Multi-contact Cuff Electrode.
- Author
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Paul B. Yoo, Mesut Sahin, and Dominique M. Durand
- Abstract
Electrical activation of the tongue protrusor muscle has been demonstrated as an effective technique for alleviating upper airway (UAW) obstructions and is considered a potential treatment for obstructive sleep apnea (OSA). Recent studies, however, have shown marked improvements in UAW patency by coactivating the tongue protrudor and retractor muscles. As such, selective stimulation of the hypoglossal nerve (XII) using a single implantable device presents an attractive approach for treating OSA. In order to demonstrate the feasibility of such a device, the maximum achievable stimulation selectivity of the Flat Interface Nerve Electrode (FINE) was investigated. The XII nerve of beagles was stimulated with an acutely implanted FINE, while the corresponding neural and muscular responses were recorded and analyzed. The overall performance of the FINE, as depicted by the average of the maximum target-specific selectivity values, S(i), confirmed that high degrees of selectivity can be achieved at both the fascicular and muscular levels: 0.93 ± 0.03 (n = 5) and 0.88 ± 0.03 (n = 4), respectively. The results of this study demonstrate the feasibility of the FINE for selective stimulation of the XII nerve branches and the innervated tongue muscles. [ABSTRACT FROM AUTHOR]
- Published
- 2004
26. Chronic tissue response to untethered microelectrode implants in the rat brain and spinal cord.
- Author
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Ali Ersen, Stella Elkabes, David S Freedman, and Mesut Sahin
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- 2015
- Full Text
- View/download PDF
27. Corticospinal signals recorded with MEAs can predict the volitional forearm forces in rats.
- Author
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Guo Y, Mesut S, Foulds RA, and Adamovich SV
- Subjects
- Animals, Axons physiology, Electrodes, Male, Models, Theoretical, Principal Component Analysis, Rats, Software, Forelimb physiology, Pyramidal Tracts physiology
- Abstract
We set out to investigate if volitional components in the descending tracts of the spinal cord white matter can be accessed with multi-electrode array (MEA) recording technique. Rats were trained to press a lever connected to a haptic device with force feedback to receive sugar pellets. A flexible-substrate multi-electrode array was chronically implanted into the dorsal column of the cervical spinal cord. Field potentials and multi-unit activities were recorded from the descending axons of the corticospinal tract while the rat performed a lever pressing task. Forelimb forces, recorded with the sensor attached to the lever, were reconstructed using the hand position data and the neural signals through multiple trials over three weeks. The regression coefficients found from the trial set were cross-validated on the other trials recorded on same day. Approximately 30 trials of at least 2 seconds were required for accurate model estimation. The maximum correlation coefficient between the actual and predicted force was 0.7 in the test set. Positional information and its interaction with neural signals improved the correlation coefficient by 0.1 to 0.15. These results suggest that the volitional information contained in the corticospinal tract can be extracted with multi-channel neural recordings made with parenchymal electrodes.
- Published
- 2013
- Full Text
- View/download PDF
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