180 results on '"Nomiyama H"'
Search Results
2. Cell-Specific Activity of the Constituent Elements of the Simian Virus 40 Enhancer
- Author
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Nomiyama, H., Fromental, C., Xiao, J. H., and Chambon, P.
- Published
- 1987
3. Organization of the chemokine genes in the human and mouse major clusters of CC and CXC chemokines: diversification between the two species
- Author
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Nomiyama, H, Mera, A, Ohneda, O, Miura, R, Suda, T, and Yoshie, O
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- 2001
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4. The effect of wedged insoles on the thrust of osteoarthritic knees
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Ogata, K., Yasunaga, M., and Nomiyama, H.
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- 1997
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5. Best practices and tools for personal information compliance management
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Kudo, M., Araki, Y., Nomiyama, H., Saito, S., and Sohda, Y.
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Japan. Personal Information Protection Act ,Data security issue ,Government regulation ,Identity theft -- Control ,Personal information -- Laws, regulations and rules ,Data security -- Laws, regulations and rules - Published
- 2007
6. Increased secretion of IL-18 in vitro by peripheral blood mononuclear cells of patients with bronchial asthma and atopic dermatitis
- Author
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El-Mezzein, R. E. H., Matsumoto, T., Nomiyama, H., and Miike, T.
- Published
- 2001
7. A retrospective study of the effectiveness of hemostatic radiotherapy with conventional fractionation in patients with advanced cancer
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Nomoto S, Akai T, Nomiyama H, Kuwano H, Kuwabara Y, and Yoshimitsu K
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conventional fractionation ,retrospective study ,lcsh:R ,hemostatic radiotherapy ,advanced cancer ,lcsh:Medicine - Abstract
The aim of this study was to assess the efficacy of hemostatic radiotherapy (HRT) in patients with advanced cancer. Eighteen patients with advanced cancer treated with HRT at the Fukuoka University and Kyushu Rosai Hospitals in Japan between July 2010 and February 2015 were retrospectively assessed. The hemostatic effect of tumor-related bleeding was assessed by the clinical course of bleeding, laboratory data, the endoscopic study, and the number of blood transfusion units (BTRUs) for one month before and after HRT. The median follow-up time was 2.6 months (range, 0.7 to 36.2 months). The median age of the patients was 77 years (range, 51 to 93). The primary diseases with tumor-related bleeding included gastric cancer, urinary bladder cancer, gynecological cancer, prostate cancer, non-small-cell lung cancer, and breast cancer. The median overall survival time was three months, and the one year survival rate was 22.9% of all patients. The HRT regimens ranged from 30 Gy in 10 fractions to 40 Gy in 20 fractions. In all patients, the anemia grade and the number of BTRUs decreased for 1 month after RT. The percentage of patients who were diagnosed as “successful” for hemostasis was 83% (15 of 18 patients). HRT is therefore strongly suggested as effective for the control of tumor-related bleeding in patients with advanced cancer. The optimal radiation doses and fractions are controversial; however, this treatment should be offered for patients with a poor life expectancy.
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- 2015
8. Protein-Calorie Malnutrition Does it aggravate toxicities of environmental pollutants?
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Nomiyama, K and Nomiyama, H
- Published
- 1987
9. The chemokine and chemokine receptor superfamilies and their molecular evolution
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Zlotnik, A, Yoshie, O, and Nomiyama, H
- Abstract
The human chemokine superfamily currently includes at least 46 ligands, which bind to 18 functionally signaling G-protein-coupled receptors and two decoy or scavenger receptors. The chemokine ligands probably comprise one of the first completely known molecular superfamilies. The genomic organization of the chemokine ligand genes and a comparison of their sequences between species shows that tandem gene duplication has taken place independently in the mouse and human lineages of some chemokine families. This means that care needs to be taken when extrapolating experimental results on some chemokines from mouse to human. © 2006 BioMed Central Ltd.
- Published
- 2006
10. Structure of the 5′ end region of the human argininosuccinate synthetase gene
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Jinno, Y., Nomiyama, H., Matuo, S., Shimada, K., Matsuda, I., and Saheki, T.
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- 1985
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11. Isolation and characterization of phage clones carrying the human argininosuccinate synthetase-like genes
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Jinno, Y., Nomiyama, H., Wakasugi, S., Shimada, K., Matsuda, I., and Saheki, T.
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- 1984
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12. View composition for digital libraries.
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Takeda, K. and Nomiyama, H.
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- 2000
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13. Critical concentration of ‘unbound’ cadmium in the rabbit renal cortex
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Nomiyama, K. and Nomiyama, H.
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- 1986
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14. Organic thin film deposition in atmospheric pressure glow discharge.
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Okazaki, S., Kogoma, M., Yokoyama, T., Kodama, M., Nomiyama, H., and Ichinohe, K.
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- 1996
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15. Thermal Processes in a Streamer Discharge in Water.
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Lisitsyn, I.V. and Nomiyama, H.
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DISCHARGE of ballast water , *BIOENERGETICS - Abstract
Investigates the propagation features of a streamer discharge in water. Experimental data obtained in a study of water discharges; Calculation of the energy balance in the process of streamer propagation; Streamer propagation velocity; Conclusion.
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- 1999
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16. Nucleotide sequence of the third cytokine LD78 gene and mapping of all three LD78 gene loci to human chromosome 17.
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Hirashima, M., Ono, T., Nakao, M., Nishi, H., Kimura, A., Nomiyama, H., Hamada, F., Yoshida, M. C., and Shimada, K.
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- 1992
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17. Chronic inhalation effects of trichloroethylene on hepatic microsomal mixed function oxidase system in rats.
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Soni, M. G., Nomiyama, H., and Nomiyama, K.
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- 1990
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18. EBI1-ligand chemokine (ELC) attracts a broad spectrum of lymphocytes: activated T cells strongly up-regulate CCR7 and efficiently migrate toward ELC.
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Yoshida, R, Nagira, M, Imai, T, Baba, M, Takagi, S, Tabira, Y, Akagi, J, Nomiyama, H, and Yoshie, O
- Abstract
EBI1-ligand chemokine (ELC) is a CC chemokine constitutively expressed in various lymphoid tissues and a high-affinity functional ligand for EBI1/CCR7, a seven transmembrane G-protein-coupled receptor originally identified as an Epstein-Barr virus (EBV)-inducible gene. Here we examined chemotactic activity of ELC on peripheral blood leukocytes. ELC attracted both CD4+ and CD8+ T cells, particularly efficiently after activation with IL-2 or with phytohaemagglutinin (PHA) plus IL-2, as well as CD19+ B cells, but not CD16+ NK cells, CD14+ monocytes or neutrophils. Among CD3+ T cells, ELC attracted both CD45RO- naive and CD45 RO+ memory subsets. ELC also induced vigorous calcium mobilization in T cells stimulated with IL-2 with an ED50 of 3 nM. ELC fused with the secreted form of alkaline phosphatase (ELC-SEAP) specifically bound to lymphocytes and this binding was blocked only by ELC among 10 CC chemokines so far tested. Notably, lymphocytes stimulated with IL-2 or T cells expanded by PHA plus IL-2 showed much higher levels of binding than fresh lymphocytes. Consistently, CCR7 mRNA was detected in CD4+ and CD8+ T cells as well as B cells, but not in NK cells, monocytes or neutrophils, and was dramatically increased in T cells upon treatment with IL-2 or with PHA plus IL-2. Like ELC mRNA, CCR7 mRNA was expressed in various lymphoid tissues. By in situ hybridization, ELC and CCR7 mRNA were detected in the parafollicular and inner cortical regions of a lymph node, and in the parafollicular regions of an appendix. Collectively, ELC and CCR7 may be involved in the trafficking of a broad spectrum of lymphocytes, especially activated T cells, into and within various lymphoid tissues. [ABSTRACT FROM PUBLISHER]
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- 1998
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19. Messenger RNA coding for argininosuccinate synthetase in citrullinemia
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Kobayashi, K, Saheki, T, Imamura, Y, Noda, T, Inoue, I, Matuo, S, Hagihara, S, Nomiyama, H, Jinno, Y, and Shimada, K
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Adult ,Electrophoresis, Agar Gel ,Genetic Markers ,Cell-Free System ,Infant, Newborn ,Infant ,Nucleic Acid Hybridization ,DNA ,Argininosuccinate Synthase ,Middle Aged ,Ligases ,Kinetics ,Genes ,Liver ,Child, Preschool ,Fructose-Bisphosphate Aldolase ,Citrulline ,Humans ,RNA, Messenger ,Child ,Amino Acid Metabolism, Inborn Errors ,Research Article ,Aged - Abstract
Messenger RNA coding for argininosuccinate synthetase (ASS), extracted from the livers of some patients with citrullinemia, was analyzed using a cell-free translation system and dot and Northern blot hybridization with cDNA probe for ASS. In patients with quantitative-type citrullinemia, called type II here, previous studies have demonstrated that the hepatic content of the enzyme was about 10% of the control value, whereas the translatable mRNA level for the enzyme was similar to that of control livers. Here, we confirmed that the type II liver contained an almost normal amount of mRNA coding for ASS, judged by the dot-blot hybridization technique with cDNA. Northern blot hybridization of RNA indicated that there was hybridizable mRNA of approximately normal size (about 1.7 kilobase [kb]) in each, suggesting that large structural gene deletions had not occurred. These results indicate that in type II citrullinemia, the decrease in the enzyme protein is due either to increased degradation of the enzyme or to decreased or inhibited translation in the liver. Another type of citrullinemia was found and classified as type III. It is characterized by no detectable enzyme activity for ASS or translation activity for ASS mRNA. However, a smaller amount of RNA molecule hybridized for ASS cDNA was detected.
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- 1986
20. Prevalence of 1-antitrypsin deficiency in Japan
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Nomiyama, K., Nomiyama, H., and Matsui, H.
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Adult ,Sweden ,Adolescent ,Japan ,Humans ,Trypsin Inhibitors ,Metabolism, Inborn Errors ,United States ,Research Article - Published
- 1971
21. Extensive expansion and diversification of the chemokine gene family in zebrafish: Identification of a novel chemokine subfamily CX
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Tanase Sumio, Kikuchi Yutaka, Yoshizawa Akio, Takegawa Sumio, Izawa Toshiaki, Otsuka-Ono Kaori, Kato-Unoki Yoko, Osada Naoki, Hieshima Kunio, Nomiyama Hisayuki, Miura Retsu, Kusuda Jun, Nakao Miki, and Yoshie Osamu
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Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background The chemokine family plays important roles in cell migration and activation. In humans, at least 44 members are known. Based on the arrangement of the four conserved cysteine residues, chemokines are now classified into four subfamilies, CXC, CC, XC and CX3C. Given that zebrafish is an important experimental model and teleost fishes constitute an evolutionarily diverse group that forms half the vertebrate species, it would be useful to compare the zebrafish chemokine system with those of mammals. Prior to this study, however, only incomplete lists of the zebrafish chemokine genes were reported. Results We systematically searched chemokine genes in the zebrafish genome and EST databases, and identified more than 100 chemokine genes. These genes were CXC, CC and XC subfamily members, while no CX3C gene was identified. We also searched chemokine genes in pufferfish fugu and Tetraodon, and found only 18 chemokine genes in each species. The majority of the identified chemokine genes are unique to zebrafish or teleost fishes. However, several groups of chemokines are moderately similar to human chemokines, and some chemokines are orthologous to human homeostatic chemokines CXCL12 and CXCL14. Zebrafish also possesses a novel species-specific subfamily consisting of five members, which we term the CX subfamily. The CX chemokines lack one of the two N-terminus conserved cysteine residues but retain the third and the fourth ones. (Note that the XC subfamily only retains the second and fourth of the signature cysteines residues.) Phylogenetic analysis and genome organization of the chemokine genes showed that successive tandem duplication events generated the CX genes from the CC subfamily. Recombinant CXL-chr24a, one of the CX subfamily members on chromosome 24, showed marked chemotactic activity for carp leukocytes. The mRNA was expressed mainly during a certain period of the embryogenesis, suggesting its role in the zebrafish development. Conclusion The phylogenic and genomic organization analyses suggest that a substantial number of chemokine genes in zebrafish were generated by zebrafish-specific tandem duplication events. During such duplications, a novel chemokine subfamily termed CX was generated in zebrafish. Only two human chemokines CXCL12 and CXCL14 have the orthologous chemokines in zebrafish. The diversification observed in the numbers and sequences of chemokines in the fish may reflect the adaptation of the individual species to their respective biological environment.
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- 2008
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22. Human chemokines fractalkine (SCYD1), MDC (SCYA22) and TARC (SCYA17) are clustered on chromosome 16q13<FOOTREF>[sup 1] </FOOTREF>.
- Author
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Nomiyama, H., Imai, T., Kusuda, J., Miura, R., Callen, D.F., and Yoshie, O.
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GENE mapping , *CHEMOKINES , *HUMAN chromosomes , *POLYMERASE chain reaction , *SOMATIC hybrids , *GENES - Abstract
Abstract. Chemokines are a large family of small secreted proteins that regulate migration of white blood cells. Based on the arrangement of the first two of the four conserved cysteine residues, chemokines are classified into four subfamilies, CXC, CC, C and recently identified CX[sub 3] C. Most of the human genes for the CC chemokines are clustered at chromosome 17q11.2 (Naruse et al., 1996). Previously we identified a novel CC chemokine TARC (thymus and activation-regulated chemokine) (Imai et al., 1996) and localized its gene (SCYA17) at chromosome 16q13 (Nomiyama et al., 1996). Recently, Bazan et al. (1997) and Pan et al. (1997) mapped the CX[sub 3] C chemokine fractalkine/neurotactin gene (SCYD1) to chromosome 16. [ABSTRACT FROM AUTHOR]
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- 1998
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23. Large volume discharges in water and application to sludge treatment.
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Akiyama, H., Nomiyama, H., Katsuki, S., and Lisitsyn, I.
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- 2000
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24. Water treatment by pulsed streamer discharges.
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Lisitsyn, I.V., Nomiyama, H., Katsuki, S., and Akiyama, H.
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- 1999
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25. Reversibility of cadmium-induced health effects in rabbits
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Nomiyama, H. and Nomiyama, K.
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FOOD contamination ,HEALTH ,RABBITS - Published
- 1984
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26. APG PLASMA TREATMENT OF ETHYLENE OXIDE ON PVC SURFACE.
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Babukutty, Y., Kodama, M., Nomiyama, H., Kogoma, M., Okazaki, S., and Tateishi, T.
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- 1996
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27. Divergent neurodevelopmental profiles of very-low-birth-weight infants.
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Ogata R, Watanabe K, Chong PF, Okamoto J, Sakemi Y, Nakashima T, Ohno T, Nomiyama H, Sonoda Y, Ichimiya Y, Inoue H, Ochiai M, Yamashita H, Sakai Y, and Ohga S
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- Infant, Female, Pregnancy, Humans, Infant, Newborn, Child, Child, Preschool, Longitudinal Studies, Infant, Premature, Infant, Very Low Birth Weight, Autism Spectrum Disorder, Cerebral Palsy, Epilepsy, Attention Deficit Disorder with Hyperactivity
- Abstract
Background: Advanced perinatal medicine has decreased the mortality rate of preterm infants. Long-term neurodevelopmental outcomes of very-low-birth-weight infants (VLBWIs) remain to be investigated., Methods: Participants were 124 VLBWIs who had in-hospital birth from 2007 to 2015. Perinatal information, developmental or intelligence quotient (DQ/IQ), and neurological comorbidities at ages 3 and 6 years were analyzed., Results: Fifty-eight (47%) VLBWIs received neurodevelopmental assessments at ages 3 and 6 years. Among them, 15 (26%) showed DQ/IQ <75 at age 6 years. From age 3 to 6 years, 21 (36%) patients showed a decrease (≤-10), while 5 (9%) showed an increase (≥+10) in DQ/IQ scores. Eight (17%) with autism spectrum disorder or attention-deficit hyperactivity disorder (ASD/ADHD) showed split courses of DQ/IQ, including two with ≤-10 and one with +31 to their scores. On the other hand, all 7 VLBWIs with cerebral palsy showed DQ ≤35 at these ages. Magnetic resonance imaging detected severe brain lesions in 7 (47%) of those with DQ <75 and 1 (18%) with ASD/ADHD., Conclusions: VLBWIs show a broad spectrum of neurodevelopmental outcomes after 6 years. These divergent profiles also indicate that different risks contribute to the development of ASD/ADHD from those of cerebral palsy and epilepsy in VLBWIs., Impact: Very-low-birth-weight infants (VLBWIs) show divergent neurodevelopmental outcomes from age 3 to 6 years. A deep longitudinal study depicts the dynamic change in neurodevelopmental profiles of VLBWIs from age 3 to 6 years. Perinatal brain injury is associated with developmental delay, cerebral palsy and epilepsy, but not with ASD or ADHD at age 6 years., (© 2023. The Author(s), under exclusive licence to the International Pediatric Research Foundation, Inc.)
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- 2024
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28. Contribution of cortical lesions to cognitive impairment in Japanese patients with multiple sclerosis.
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Shinoda K, Matsushita T, Nakamura Y, Masaki K, Sakai S, Nomiyama H, Togao O, Hiwatashi A, Niino M, Isobe N, and Kira JI
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- Adult, Asian People, Cerebral Cortex pathology, Cognitive Dysfunction diagnostic imaging, Female, HLA-DRB1 Chains genetics, Humans, Imaging, Three-Dimensional, Logistic Models, Magnetic Resonance Imaging methods, Male, Neuropsychological Tests, Cerebral Cortex diagnostic imaging, Cognitive Dysfunction genetics, Cognitive Dysfunction pathology, Multiple Sclerosis pathology, Multiple Sclerosis psychology
- Abstract
Cortical lesions (CLs) have a low prevalence and are associated with physical disabilities in Japanese patients with multiple sclerosis (MS). However, the contribution of CLs to cognitive impairment remains unclear in Asian MS. Sixty-one prospectively enrolled MS patients underwent three-dimensional double inversion recovery MR imaging, the Brief Repeatable Battery of Neuropsychological Tests (BRB-N), the Apathy Scale (AS), the Fatigue Questionnaire (FQ), and the Hospital Anxiety and Depression Scale (HADS) within a 1-week period. The cognitive impairment index (CII) score was calculated to measure patients' overall cognitive impairment. MS patients with CLs had poorer scores than those without CLs in most BRB-N tests, but scored comparably in the FQ, AS, and HADS. The number of CLs correlated negatively with all BRB-N test scores and positively with total CII scores. Leukocortical lesions were more extensively associated with cognitive dysfunction in various domains than intracortical lesions. Stepwise multiple regression analysis revealed that potential confounding factors for the highest quartile of CII score were the number of CLs (odds ratio 2.38, p = 0.0070) and the Expanded Disability Severity Scale score (odds ratio 2.13, p = 0.0003). Our results demonstrate that the presence and number of CLs are robustly associated with cognitive dysfunction in Asian MS patients.
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- 2020
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29. Translational Repression of a Splice Variant of Cynomolgus Macaque CXCL1L by Its C-Terminal Sequence.
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Nomiyama H, Osada N, Takahashi I, Terao K, Yamagata K, and Yoshie O
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- Amino Acid Sequence, Animals, Cells, Cultured, Chemokine CXCL1 chemistry, Chemokine CXCL1 classification, Chemokine CXCL1 metabolism, DNA, Complementary genetics, Macaca fascicularis, Phylogeny, RNA, Messenger genetics, RNA, Messenger metabolism, Alternative Splicing, Chemokine CXCL1 genetics, Gene Expression Regulation, Protein Biosynthesis, Protein Interaction Domains and Motifs genetics
- Abstract
We previously isolated a cDNA clone from cynomolgus macaque encoding a novel CXC chemokine that we termed CXCL1L from its close similarity to CXCL1. However, the cDNA consisted of 3 exons instead of 4 exons that were typically seen in other CXC chemokines. Here, we isolated a cDNA encoding the full-length variant of CXCL1L that we termed CXCL1Lβ. CXCL1Lβ is 50 amino acids longer than the original CXCL1L, which we now term CXCL1Lα. The CXCL1Lβ mRNA is much more abundantly expressed in the cynomolgus macaque tissues than CXCL1Lα mRNA. However, CXCL1Lβ protein was poorly produced by transfected cells compared with that of CXCL1Lα. When the coding region of the fourth exon was fused to the C-terminus of CXCL1 or even to a nonsecretory protein firefly luciferase, the fused proteins were also barely produced, although the mRNAs were abundantly expressed. The polysome profiling analysis suggested that the inhibition was mainly at the translational level. Furthermore, we demonstrated that the C-terminal 5 amino acids of CXCL1Lβ were critical for the translational repression. The present study, thus, reveals a unique translational regulation controlling the production of a splicing variant of CXCL1L. Since the CXCL1L gene is functional only in the Old World monkeys, we also discuss possible reasons for the conservation of the active CXCL1L gene in these monkeys during the primate evolution.
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- 2017
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30. Functional roles of evolutionary conserved motifs and residues in vertebrate chemokine receptors.
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Nomiyama H and Yoshie O
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- Amino Acid Sequence, Animals, Biological Evolution, Conserved Sequence, Humans, Molecular Sequence Data, Phylogeny, Protein Structure, Tertiary, Receptors, Chemokine classification, Receptors, Chemokine genetics
- Abstract
Chemokine receptors regulate cell migration and homing. They belong to the rhodopsin-like family of GPCRs. Their ancestor genes emerged in the early stages of vertebrate evolution. Since then, the family has been greatly expanded through whole and segmental genome duplication events. During evolution, many amino acid changes have been introduced in individual chemokine receptors, but certain motifs and residues are highly conserved. Previously, we proposed a nomenclature system of the vertebrate chemokine receptors based on their evolutionary history and phylogenetic analyses. With the use of this classification system, we are now able to confidently assign the species orthologs of vertebrate chemokine receptors. Here, we systematically analyze conserved motifs and residues of each group of orthologous chemokine receptors that may play important roles in their signaling and biologic functions. Our present analysis may provide useful information on how individual chemokine receptors are activated upon ligand binding., (© Society for Leukocyte Biology.)
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- 2015
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31. Mesenchymal stem cells markedly suppress inflammatory bone destruction in rats with adjuvant-induced arthritis.
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Takano T, Li YJ, Kukita A, Yamaza T, Ayukawa Y, Moriyama K, Uehara N, Nomiyama H, Koyano K, and Kukita T
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- Animals, Arthritis, Experimental complications, Arthritis, Experimental therapy, Bone Resorption etiology, Bone Resorption immunology, Cell Differentiation, Chemokine CCL3 metabolism, Chemokine CXCL12 metabolism, Chemokines metabolism, Chemotaxis, Cytokines metabolism, Female, Mesenchymal Stem Cell Transplantation, Mesenchymal Stem Cells pathology, Osteoclasts immunology, Osteoclasts pathology, Rats, Rats, Inbred Lew, Receptors, Chemokine metabolism, Arthritis, Experimental immunology, Bone Resorption prevention & control, Mesenchymal Stem Cells immunology
- Abstract
Mesenchymal stem cells (MSCs) have potential to differentiate into multiple cell lineages. Recently, it was shown that MSCs also have anti-inflammatory and immunomodulatory functions. In this report, we investigated the regulatory function of MSCs in the development of inflammatory bone destruction in rats with adjuvant-induced arthritis (AA rats). MSCs were isolated from rat bone marrow tissues, expanded in the presence of basic FGF, and intraperitoneally injected into AA rats. MSC administration significantly suppressed inflammatory parameters: swelling score, swelling width, and thickness of hind paw. Radiographic evaluation indicated that MSC significantly suppressed bone destruction. Histological analysis showed that administration of MSCs markedly suppressed osteoclastogenesis in AA rats. To further delineate their effects on osteoclastogenesis, MSCs were added to in vitro bone marrow cultures undergoing osteoclastogenesis. MSCs significantly suppressed osteoclastogenesis in this system. Chemokine receptor expression in MSCs was assessed by RT-PCR, and a chemotactic assay was performed using a transwell culture system. MSCs showed significant chemotaxis to MIP-1α (CCL3) and SDF-1α (CXCL12), chemokines preferentially expressed in the area of inflammatory bone destruction. Furthermore, MSCs expressed IL-10 and osteoprotegerin, cytokines that suppress osteoclastogenesis. These data suggest that recruitment of MSC to the area of bone destruction in AA rats could suppress inflammatory bone destruction and raise the possibility that MSCs may have potential for the treatment of inflammatory bone destruction in arthritis.
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- 2014
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32. International Union of Basic and Clinical Pharmacology. [corrected]. LXXXIX. Update on the extended family of chemokine receptors and introducing a new nomenclature for atypical chemokine receptors.
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Bachelerie F, Ben-Baruch A, Burkhardt AM, Combadiere C, Farber JM, Graham GJ, Horuk R, Sparre-Ulrich AH, Locati M, Luster AD, Mantovani A, Matsushima K, Murphy PM, Nibbs R, Nomiyama H, Power CA, Proudfoot AE, Rosenkilde MM, Rot A, Sozzani S, Thelen M, Yoshie O, and Zlotnik A
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- Animals, Arthropod Proteins genetics, Arthropod Proteins metabolism, Humans, Protozoan Proteins genetics, Protozoan Proteins metabolism, Terminology as Topic, Ticks, Viral Proteins genetics, Viral Proteins metabolism, Receptors, Chemokine classification, Receptors, Chemokine genetics, Receptors, Chemokine metabolism
- Abstract
Sixteen years ago, the Nomenclature Committee of the International Union of Pharmacology approved a system for naming human seven-transmembrane (7TM) G protein-coupled chemokine receptors, the large family of leukocyte chemoattractant receptors that regulates immune system development and function, in large part by mediating leukocyte trafficking. This was announced in Pharmacological Reviews in a major overview of the first decade of research in this field [Murphy PM, Baggiolini M, Charo IF, Hébert CA, Horuk R, Matsushima K, Miller LH, Oppenheim JJ, and Power CA (2000) Pharmacol Rev 52:145-176]. Since then, several new receptors have been discovered, and major advances have been made for the others in many areas, including structural biology, signal transduction mechanisms, biology, and pharmacology. New and diverse roles have been identified in infection, immunity, inflammation, development, cancer, and other areas. The first two drugs acting at chemokine receptors have been approved by the U.S. Food and Drug Administration (FDA), maraviroc targeting CCR5 in human immunodeficiency virus (HIV)/AIDS, and plerixafor targeting CXCR4 for stem cell mobilization for transplantation in cancer, and other candidates are now undergoing pivotal clinical trials for diverse disease indications. In addition, a subfamily of atypical chemokine receptors has emerged that may signal through arrestins instead of G proteins to act as chemokine scavengers, and many microbial and invertebrate G protein-coupled chemokine receptors and soluble chemokine-binding proteins have been described. Here, we review this extended family of chemokine receptors and chemokine-binding proteins at the basic, translational, and clinical levels, including an update on drug development. We also introduce a new nomenclature for atypical chemokine receptors with the stem ACKR (atypical chemokine receptor) approved by the Nomenclature Committee of the International Union of Pharmacology and the Human Genome Nomenclature Committee.
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- 2013
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33. Tunneling nanotube formation is essential for the regulation of osteoclastogenesis.
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Takahashi A, Kukita A, Li YJ, Zhang JQ, Nomiyama H, Yamaza T, Ayukawa Y, Koyano K, and Kukita T
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- Animals, Biological Transport, Bridged Bicyclo Compounds, Heterocyclic pharmacology, Cell Surface Extensions metabolism, Cells, Cultured, Membrane Proteins metabolism, Mice, Mice, Inbred C57BL, Nerve Tissue Proteins metabolism, Osteoclasts ultrastructure, Phospholipids metabolism, Rats, Thiazolidines pharmacology, Tumor Necrosis Factors genetics, Tumor Necrosis Factors metabolism, Up-Regulation, Cell Differentiation, Cell Surface Extensions ultrastructure, Osteoclasts physiology
- Abstract
Osteoclasts are the multinucleated giant cells formed by cell fusion of mononuclear osteoclast precursors. Despite the finding of several membrane proteins involving DC-STAMP as regulatory proteins required for fusion among osteoclast precursors, cellular and molecular events concerning this process are still ambiguous. Here we identified Tunneling Nanotubes (TNTs), long intercellular bridges with small diameters, as the essential cellular structure for intercellular communication among osteoclast precursors in prior to cell fusion. Formation of TNTs was highly associated with osteoclastogenesis and it was accompanied with the significant induction of the M-Sec gene, an essential gene for TNT formation. M-Sec gene expression was significantly upregulated by RANKL-treatment in osteoclast precursor cell line. Blockage of TNT formation by Latrunclin B or by M-Sec siRNA significantly suppressed osteoclastogenesis. We have detected the rapid intercellular transport of not only the membrane phospholipids labeled with DiI but also the DC-STAMP-GFP fusion protein through TNTs formed among osteoclast precursors during osteoclastogenesis. Transportation of such regulatory molecules through TNTs would be essential for the process of the specific cell fusion among osteoclast precursors., (Copyright © 2012 Wiley Periodicals, Inc.)
- Published
- 2013
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34. Systematic classification of vertebrate chemokines based on conserved synteny and evolutionary history.
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Nomiyama H, Osada N, and Yoshie O
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- Animals, Chemokines genetics, Chemokines metabolism, Genome, Human, Humans, Multigene Family, Phylogeny, Receptors, Chemokine genetics, Receptors, Chemokine metabolism, Chemokines classification, Evolution, Molecular, Synteny
- Abstract
The genes involved in host defences are known to undergo rapid evolution. Therefore, it is often difficult to assign orthologs in multigene families among various vertebrate species. Chemokines are a large family of small cytokines that orchestrate cell migration in health and disease. Herein, we have surveyed the genomes of 18 representative vertebrate species for chemokine genes and identified a total of 553 genes. We have determined their orthologous relationships and classified them in accordance with the current systematic chemokine nomenclature system. Our study reveals an interesting evolutionary history that gave origin and diversification to the vertebrate chemokine superfamily., (© 2012 The Authors Genes to Cells © 2012 by the Molecular Biology Society of Japan and Wiley Publishing Asia Pty Ltd.)
- Published
- 2013
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35. Genome diversification mechanism of rodent and Lagomorpha chemokine genes.
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Shibata K, Nomiyama H, Yoshie O, and Tanase S
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- Animals, Conserved Sequence, Humans, Sequence Homology, Nucleic Acid, Species Specificity, Chemokines genetics, Chromosome Mapping methods, Genetic Variation genetics, Genome genetics, Lagomorpha genetics, Mice genetics
- Abstract
Chemokines are a large family of small cytokines that are involved in host defence and body homeostasis through recruitment of cells expressing their receptors. Their genes are known to undergo rapid evolution. Therefore, the number and content of chemokine genes can be quite diverse among the different species, making the orthologous relationships often ambiguous even between closely related species. Given that rodents and rabbit are useful experimental models in medicine and drug development, we have deduced the chemokine genes from the genome sequences of several rodent species and rabbit and compared them with those of human and mouse to determine the orthologous relationships. The interspecies differences should be taken into consideration when experimental results from animal models are extrapolated into humans. The chemokine gene lists and their orthologous relationships presented here will be useful for studies using these animal models. Our analysis also enables us to reconstruct possible gene duplication processes that generated the different sets of chemokine genes in these species.
- Published
- 2013
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36. A family tree of vertebrate chemokine receptors for a unified nomenclature.
- Author
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Nomiyama H, Osada N, and Yoshie O
- Subjects
- Animals, Base Sequence, Cell Movement genetics, Humans, Molecular Sequence Data, Receptors, Chemokine classification, Structural Homology, Protein, Terminology as Topic, Biological Evolution, Phylogeny, Receptors, Chemokine genetics
- Abstract
Chemokines receptors are involved in the recruitment of various cell types in inflammatory and physiological conditions. There are 23 known chemokine receptor genes in the human genome. However, it is still unclear how many chemokine receptors exist in the genomes of various vertebrate species other than human and mouse. Moreover, the orthologous relationships are often obscure between the genes of higher and lower vertebrates. In order to provide a basis for a unified nomenclature system of the vertebrate chemokine receptor gene family, we have analysed the chemokine receptor genes from the genomes of 16 vertebrate species, and classify them into 29 orthologous groups using phylogenetic and comparative genomic analyses. The results reveal a continuous gene birth and death process during the vertebrate evolution and an interesting evolutionary history of the chemokine receptor genes after the emergence in agnathans., (Copyright © 2011 Elsevier Ltd. All rights reserved.)
- Published
- 2011
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37. The evolution of mammalian chemokine genes.
- Author
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Nomiyama H, Osada N, and Yoshie O
- Subjects
- Animals, Gene Conversion, Gene Duplication, Genome, Genome, Human, Humans, Mice, Terminology as Topic, Biological Evolution, Chemokines genetics, Evolution, Molecular, Mammals genetics
- Abstract
Chemokines play an important role in orchestrating cell recruitment and localization in both physiological and pathological conditions. More than 44 ligands have been identified in the human genome. A significantly different set of chemokines, however, is found in the mouse genome, suggesting a rapid evolution of the chemokine system in mammalian genomes. Thus, there are lineage and even individual-specific differences in chemokine genes in mammals. Differences in the expression and function between even recently duplicated genes are also evident. In this review, we discuss how evolutionary events such as gene duplication and gene conversion have shaped the diverse arrays of chemokines in mammalian genomes., (Copyright © 2010 Elsevier Ltd. All rights reserved.)
- Published
- 2010
- Full Text
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38. Extensive expansion and diversification of the chemokine gene family in zebrafish: identification of a novel chemokine subfamily CX.
- Author
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Nomiyama H, Hieshima K, Osada N, Kato-Unoki Y, Otsuka-Ono K, Takegawa S, Izawa T, Yoshizawa A, Kikuchi Y, Tanase S, Miura R, Kusuda J, Nakao M, and Yoshie O
- Subjects
- Animals, Base Sequence, Chemokines chemistry, Chemokines classification, Chemotaxis, Leukocyte drug effects, DNA Primers genetics, DNA, Complementary genetics, Gene Expression Regulation, Developmental, Humans, Phylogeny, Recombinant Proteins genetics, Recombinant Proteins pharmacology, Species Specificity, Terminology as Topic, Zebrafish growth & development, Zebrafish Proteins chemistry, Zebrafish Proteins classification, Chemokines genetics, Multigene Family, Zebrafish genetics, Zebrafish immunology, Zebrafish Proteins genetics
- Abstract
Background: The chemokine family plays important roles in cell migration and activation. In humans, at least 44 members are known. Based on the arrangement of the four conserved cysteine residues, chemokines are now classified into four subfamilies, CXC, CC, XC and CX3C. Given that zebrafish is an important experimental model and teleost fishes constitute an evolutionarily diverse group that forms half the vertebrate species, it would be useful to compare the zebrafish chemokine system with those of mammals. Prior to this study, however, only incomplete lists of the zebrafish chemokine genes were reported., Results: We systematically searched chemokine genes in the zebrafish genome and EST databases, and identified more than 100 chemokine genes. These genes were CXC, CC and XC subfamily members, while no CX3C gene was identified. We also searched chemokine genes in pufferfish fugu and Tetraodon, and found only 18 chemokine genes in each species. The majority of the identified chemokine genes are unique to zebrafish or teleost fishes. However, several groups of chemokines are moderately similar to human chemokines, and some chemokines are orthologous to human homeostatic chemokines CXCL12 and CXCL14. Zebrafish also possesses a novel species-specific subfamily consisting of five members, which we term the CX subfamily. The CX chemokines lack one of the two N-terminus conserved cysteine residues but retain the third and the fourth ones. (Note that the XC subfamily only retains the second and fourth of the signature cysteines residues.) Phylogenetic analysis and genome organization of the chemokine genes showed that successive tandem duplication events generated the CX genes from the CC subfamily. Recombinant CXL-chr24a, one of the CX subfamily members on chromosome 24, showed marked chemotactic activity for carp leukocytes. The mRNA was expressed mainly during a certain period of the embryogenesis, suggesting its role in the zebrafish development., Conclusion: The phylogenic and genomic organization analyses suggest that a substantial number of chemokine genes in zebrafish were generated by zebrafish-specific tandem duplication events. During such duplications, a novel chemokine subfamily termed CX was generated in zebrafish. Only two human chemokines CXCL12 and CXCL14 have the orthologous chemokines in zebrafish. The diversification observed in the numbers and sequences of chemokines in the fish may reflect the adaptation of the individual species to their respective biological environment.
- Published
- 2008
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39. Self-expandable metallic stents as palliative treatment for malignant colorectal obstruction.
- Author
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Tsurumaru D, Hidaka H, Okada S, Sakoguchi T, Matsuda H, Matsumata T, Nomiyama H, Utsunomiya T, Irie H, and Honda H
- Subjects
- Adult, Aged, Aged, 80 and over, Colon pathology, Female, Fluoroscopy methods, Humans, Male, Middle Aged, Palliative Care, Rectum pathology, Treatment Outcome, Colorectal Neoplasms therapy, Intestinal Obstruction therapy, Stents
- Abstract
Background: In recent years, stent placement for malignant colorectal obstruction has become an accepted alternative to surgery. The purpose of this study was to evaluate the usefulness of self-expandable metallic stents (SEMS) as palliative management for patients with unresectable malignant colorectal obstruction., Methods: Twelve patients with unresectable malignant colorectal obstruction were treated with SEMS as palliative therapy. The sites of obstruction were located in the rectum (n = 9), the descending colon (n = 1), and the transverse colon (n = 2). All procedures were performed with combined endoscopic and fluoroscopic guidance. We analyzed the technical and clinical success rates of stent placement and the complications associated with the procedure., Results: The stents were successfully implanted and bowel obstruction was relieved in all cases; the technical and clinical success rates were 100%. Two complications occurred, including stent migration. There was no case requiring reintervention. All patients died of initial disease or another coexisting disease between 9 and 534 days (mean 133 +/- 148 days) after stent placement. None of the patients with stent in position at death had clinical or radiologic signs of bowel obstruction., Conclusions: SEMS placement in patients with malignant colorectal obstruction is technically feasible and safe, making it useful as a palliative treatment.
- Published
- 2007
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40. Identification of a novel CXCL1-like chemokine gene in macaques and its inactivation in hominids.
- Author
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Nomiyama H, Otsuka-Ono K, Miura R, Osada N, Terao K, Yoshie O, and Kusuda J
- Subjects
- Amino Acid Sequence, Animals, Chemokine CXCL1, Chemokines, CXC metabolism, Humans, Macaca fascicularis, Macaca mulatta, Molecular Sequence Data, Pan troglodytes, Chemokines, CXC antagonists & inhibitors, Chemokines, CXC genetics, Gene Silencing, Hominidae genetics, Macaca genetics
- Abstract
Chemokines are a rapidly evolving cytokine gene family. Because of various genome rearrangements after divergence of primates and rodents, humans and mice have different sets of chemokine genes, with humans having members outnumbering those of mice. Here, we report the occurrence of lineage-specific chemokine gene generation or inactivation events within primates. By using human chemokine sequences as queries, we isolated a novel cynomolgus macaque CXC chemokine cDNA. The encoded chemokine, termed CXCL1L (from CXCL1-like) showed the highest similarity to human CXCL1. A highly homologous gene was also found in the rhesus macaque genome. By comparing the genome organization of the major CXC chemokine clusters among the primates, we found that one copy of the duplicated CXCL1 genes turned into a pseudogene in the hominids, whereas the gene in macaques has been maintained as a functionally active CXCL1L. In addition, cynomolgus macaque was found to contain an additional CXC chemokine highly homologous to CXCL3, termed CXCL3L (from CXCL3-like). These results demonstrate the birth-and-death process of a new gene in association with gene duplication within the primates.
- Published
- 2007
- Full Text
- View/download PDF
41. Effect of thymoquinone on cyclooxygenase expression and prostaglandin production in a mouse model of allergic airway inflammation.
- Author
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El Mezayen R, El Gazzar M, Nicolls MR, Marecki JC, Dreskin SC, and Nomiyama H
- Subjects
- Allergens immunology, Animals, Bronchial Hyperreactivity immunology, Bronchial Hyperreactivity pathology, Cytokines biosynthesis, Cytokines genetics, Dinoprostone biosynthesis, Disease Models, Animal, Female, Gene Expression Regulation, Male, Mice, Mice, Inbred BALB C, Ovalbumin pharmacology, Th2 Cells metabolism, Anti-Inflammatory Agents therapeutic use, Benzoquinones therapeutic use, Bronchial Hyperreactivity drug therapy, Bronchial Hyperreactivity metabolism, Cyclooxygenase 1 metabolism, Cyclooxygenase 2 metabolism, Prostaglandin D2 biosynthesis
- Abstract
Prostaglandins (PGs) are potent proinflammatory mediators generated through arachidonic acid metabolism by cyclooxygenase-1 and -2 (COX-1 and COX-2) in response to different stimuli and play an important role in modulating the inflammatory responses in a number of conditions, including allergic airway inflammation. Thymoquinone (TQ) is the main active constituent of the volatile oil extract of Nigella sativa seeds and has been reported to have anti-inflammatory properties. We examined the effect of TQ on the in vivo production of PGs and lung inflammation in a mouse model of allergic airway inflammation. Mice sensitized and challenged through the airways with ovalbumin (OVA) exhibited a significant increase in PGD2 and PGE2 production in the airways. The inflammatory response was characterized by an increase in the inflammatory cell numbers and Th2 cytokine levels in the bronchoalveolar lavage (BAL) fluid, lung airway eosinophilia and goblet cell hyperplasia, as well as the induction of COX-2 protein expression in the lung. Intraperitoneal injection of TQ for 5 days before the first OVA challenge attenuated airway inflammation as demonstrated by the significant decrease in Th2 cytokines, lung eosinophilia, and goblet cell hyperplasia. This attenuation of airway inflammation was concomitant to the inhibition of COX-2 protein expression and PGD2 production. However, TQ had a slight inhibitory effect on COX-1 expression and PGE2 production. These findings suggest that TQ has an anti-inflammatory effect during the allergic response in the lung through the inhibition of PGD2 synthesis and Th2-driven immune response.
- Published
- 2006
- Full Text
- View/download PDF
42. The chemokine and chemokine receptor superfamilies and their molecular evolution.
- Author
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Zlotnik A, Yoshie O, and Nomiyama H
- Subjects
- Animals, Chemokines metabolism, Chromosome Mapping, Gene Duplication, Humans, Ligands, Multigene Family, Receptors, Chemokine metabolism, Transduction, Genetic, Chemokines genetics, Evolution, Molecular, Receptors, Chemokine genetics
- Abstract
The human chemokine superfamily currently includes at least 46 ligands, which bind to 18 functionally signaling G-protein-coupled receptors and two decoy or scavenger receptors. The chemokine ligands probably comprise one of the first completely known molecular superfamilies. The genomic organization of the chemokine ligand genes and a comparison of their sequences between species shows that tandem gene duplication has taken place independently in the mouse and human lineages of some chemokine families. This means that care needs to be taken when extrapolating experimental results on some chemokines from mouse to human.
- Published
- 2006
- Full Text
- View/download PDF
43. Identification of genes differentially expressed in osteoclast-like cells.
- Author
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Nomiyama H, Egami K, Wada N, Tou K, Horiuchi M, Matsusaki H, Miura R, Yoshie O, and Kukita T
- Subjects
- Animals, Carrier Proteins pharmacology, Cell Differentiation drug effects, Cell Line, Gene Expression drug effects, Gene Expression Profiling, Membrane Glycoproteins pharmacology, Mice, Osteoclasts cytology, Osteoclasts drug effects, RANK Ligand, Receptor Activator of Nuclear Factor-kappa B, Gene Expression Regulation, Osteoclasts metabolism
- Abstract
Homeostasis of the skeletal system is maintained by a balance between bone formation and resorption. The receptor activator of NF-kappaB ligand (RANKL) induces the differentiation of bone-resorbing cells, osteoclasts. To identify genes regulated during osteoclast differentiation, we constructed a subtraction cDNA library using a mouse RAW264 macrophage cell line that differentiates into osteoclast-like multinucleated cells after treatment with RANKL. Northern blot analysis showed that RANKL treatment upregulated expression of 17 genes. Among these were the genes for five H(+)-ATPase subunits, two chemokines, and the osteoclast marker cathepsin K. In addition, a mouse homolog of human dendritic cell (DC)-specific transmembrane protein (DCSTAMP), whose function in osteoclastogenesis was recently revealed, was also included in the induced genes. Characterization of these inducible genes will provide an insight into the biology of osteoclasts and the mechanism of bone-related diseases.
- Published
- 2005
- Full Text
- View/download PDF
44. RANKL-induced DC-STAMP is essential for osteoclastogenesis.
- Author
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Kukita T, Wada N, Kukita A, Kakimoto T, Sandra F, Toh K, Nagata K, Iijima T, Horiuchi M, Matsusaki H, Hieshima K, Yoshie O, and Nomiyama H
- Subjects
- Acid Phosphatase genetics, Acid Phosphatase metabolism, Animals, Blotting, Northern, Carrier Proteins physiology, Cells, Cultured, Immunohistochemistry, Isoenzymes genetics, Isoenzymes metabolism, Membrane Glycoproteins physiology, Membrane Proteins physiology, Mice, Oligonucleotides, RANK Ligand, RNA, Small Interfering genetics, Receptor Activator of Nuclear Factor-kappa B, Reverse Transcriptase Polymerase Chain Reaction, Tartrate-Resistant Acid Phosphatase, Carrier Proteins metabolism, Dendritic Cells metabolism, Gene Expression Regulation, Membrane Glycoproteins metabolism, Membrane Proteins metabolism, Osteoclasts physiology, RNA, Messenger metabolism
- Abstract
Osteoclasts are bone-resorbing, multinucleated giant cells that are essential for bone remodeling and are formed through cell fusion of mononuclear precursor cells. Although receptor activator of nuclear factor-kappaB ligand (RANKL) has been demonstrated to be an important osteoclastogenic cytokine, the cell surface molecules involved in osteoclastogenesis are mostly unknown. Here, we report that the seven-transmembrane receptor-like molecule, dendritic cell-specific transmembrane protein (DC-STAMP) is involved in osteoclastogenesis. Expression of DC-STAMP is rapidly induced in osteoclast precursor cells by RANKL and other osteoclastogenic stimulations. Targeted inhibition of DC-STAMP by small interfering RNAs and specific antibody markedly suppressed the formation of multinucleated osteoclast-like cells. Overexpression of DC-STAMP enhanced osteoclastogenesis in the presence of RANKL. Furthermore, DC-STAMP directly induced the expression of the osteoclast marker tartrate-resistant acid phosphatase. These data demonstrate for the first time that DC-STAMP has an essential role in osteoclastogenesis.
- Published
- 2004
- Full Text
- View/download PDF
45. Possible involvement of MIP-1alpha in the recruitment of osteoclast progenitors to the distal tibia in rats with adjuvant-induced arthritis.
- Author
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Toh K, Kukita T, Wu Z, Kukita A, Sandra F, Tang QY, Nomiyama H, and Iijima T
- Subjects
- Animals, Arthritis, Experimental etiology, Arthritis, Experimental metabolism, Bone Marrow Cells drug effects, Bone Marrow Cells metabolism, Bone Marrow Cells pathology, Carrier Proteins metabolism, Cell Differentiation drug effects, Cell Movement drug effects, Cells, Cultured, Chemokine CCL3, Chemokine CCL4, Clone Cells, Disease Models, Animal, Dose-Response Relationship, Drug, Giant Cells metabolism, Giant Cells pathology, Macrophage Inflammatory Proteins pharmacology, Membrane Glycoproteins metabolism, Mesenchymal Stem Cells drug effects, Mesenchymal Stem Cells metabolism, Osteoclasts drug effects, Osteoclasts metabolism, Osteogenesis drug effects, RANK Ligand, Rats, Rats, Inbred Lew, Tibia, Arthritis, Experimental pathology, Macrophage Inflammatory Proteins metabolism, Mesenchymal Stem Cells pathology, Osteoclasts pathology, Osteogenesis physiology
- Abstract
In the rat model of rheumatoid arthritis, a marked formation of osteoclasts is found in the distal tibia and the metatarsal bone. It was therefore postulated that osteoclast progenitors would be increased in the bone marrow cavities of rats with adjuvant-induced arthritis (AA rats). Bone marrow cells obtained from tibia of AA rats were cultured to form cells in the osteoclast lineage to access the number of osteoclast progenitors. Unexpectedly, only a suppressed level of osteoclast progenitors was detected in the diaphyseal bone marrow of tibia in AA rats. Distribution of osteoclast progenitors in the bone marrow cavity was examined, and it was shown that osteoclast progenitors accumulated in the distal tibia. Macrophage inflammatory protein (MIP)-1alpha, an osteoclastogenic CC chemokine, was expressed in ED-1-positive macrophages localizing in the distal tibia with marked bone destruction. Chemotaxis studies showed that MIP-1alpha expressed significant activity towards bone marrow cells. The suppressed level of osteoclastogenesis in bone marrow cells of AA rats was restored to a normal level by the addition of MIP-1alpha. It was suggested that MIP-1alpha is involved in the migration of osteoclast progenitors to the distal tibia as well as in osteoclastogenesis in AA rats. In these rats, in situ hybridization of the distal tibia with a high level of bone destruction showed significant expression of Receptor activator nuclear factor kappaB ligand (RANKL) messenger RNA in aggregates of multinucleated osteoclast-like cells present in the bone marrow cavity, a unique pathological feature for these rats. Migrated osteoclast progenitors are thought to be efficiently differentiated into osteoclasts in response to RANKL expressed by the aggregates of osteoclast-like cells under the influence of the MIP-1alpha. Such positive-feedback regulation of osteoclastogenesis could result in the highest recruitment of active osteoclasts in the area of marked bone destruction.
- Published
- 2004
- Full Text
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46. Characterization of a gene cluster of Staphylococcus warneri ISK-1 encoding the biosynthesis of and immunity to the lantibiotic, nukacin ISK-1.
- Author
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Aso Y, Sashihara T, Nagao J, Kanemasa Y, Koga H, Hashimoto T, Higuchi T, Adachi A, Nomiyama H, Ishizaki A, Nakayama J, and Sonomoto K
- Subjects
- Amino Acid Sequence, Bacteriocins metabolism, Base Sequence, Molecular Sequence Data, Plasmids genetics, Staphylococcus metabolism, Bacteriocins genetics, Genes, Bacterial genetics, Open Reading Frames genetics, Staphylococcus genetics
- Abstract
We characterized a gene cluster in a plasmid designated pPI-1 of Staphylococcus warneri ISK-1 encoding the biosynthesis of and immunity to the lacticin-481 type lantibiotic, nukacin ISK-1. The DNA sequence suggested that the nukacin ISK-1 gene cluster consists of at least six genes, nukA (a structural gene), -M, -T, -F, -E, -G, and two open reading frames, ORF1 and ORF7. NukM and NukT were predicted to be involved in post-translational modification and secretion of nukacin ISK-1 respectively. NukF, -E, and -G were predicted to form a membrane complex which contributes to self-protection from nukacin ISK-1. Transcriptional analyses revealed that nukM through ORF7 comprises an operon, and that ORF1 is transcribed independently from downstream of nukA. The transcriptional levels of the nukA and nukM genes were enhanced by osmotic stress. The expression level of the nukA transcript was scarcely enhanced by nukacin ISK-1, suggesting that expression is not under the control of the autoregulatory circuit.
- Published
- 2004
- Full Text
- View/download PDF
47. Direct stimulation of osteoclastogenesis by MIP-1alpha: evidence obtained from studies using RAW264 cell clone highly responsive to RANKL.
- Author
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Watanabe T, Kukita T, Kukita A, Wada N, Toh K, Nagata K, Nomiyama H, and Iijima T
- Subjects
- Acid Phosphatase metabolism, Animals, Bone Marrow Cells, Carrier Proteins pharmacology, Cathepsin K, Cathepsins genetics, Cathepsins metabolism, Cell Adhesion, Cell Differentiation, Chemokine CCL3, Chemokine CCL4, Clone Cells, Dose-Response Relationship, Drug, Isoenzymes metabolism, Male, Membrane Glycoproteins pharmacology, Mice, Osteoblasts cytology, Osteoblasts drug effects, Osteoclasts drug effects, RANK Ligand, RNA, Messenger analysis, Rats, Rats, Sprague-Dawley, Receptor Activator of Nuclear Factor-kappa B, Reverse Transcriptase Polymerase Chain Reaction, Stimulation, Chemical, Tartrate-Resistant Acid Phosphatase, Tumor Necrosis Factor-alpha pharmacology, Macrophage Inflammatory Proteins pharmacology, Osteoclasts cytology, Osteogenesis drug effects
- Abstract
Macrophage inflammatory protein-1alpha (MIP-1alpha) is a member of the CC chemokines. We have previously reported the use of a whole bone marrow culture system to show that MIP-1alpha stimulates the formation of osteoclast-like multinucleated cells. Here we use rat bone marrow cells deprived of stromal cells, and clones obtained from murine macrophage-like cell line RAW264 to show that MIP-1alpha acts directly on cells in osteoclast lineage. We obtained several types of RAW264 cell clones, one of these clones, designated as RAW264 cell D clone (D clone), showed an extremely high response to receptor activator of NFkappaB ligand (RANKL) and tumor necrosis factor-alpha (TNF-alpha), while the other clone, RAW264 cell N clone (N clone), demonstrated no response to RANKL or TNF-alpha. Although both clones expressed receptor activator NFkappaB (RANK) before being stimulated for differentiation, only the D clone expressed cathepsin K when cells were stimulated to differentiate to osteoclasts. MIP-1alpha stimulated the formation of mononuclear preosteoclast-like cells from rat bone marrow cells deprived of stromal cells. MIP-1alpha also stimulated formation of osteoclast-like multinucleated cells from the D clone, when these cells were stimulated with RANKL and TNF-alpha. These findings provide strong evidence to show that MIP-1alpha acts directly on cells in the osteoclast lineage to stimulate osteoclastogenesis. Furthermore, pretreatment of RAW264 cell D clone with MIP-1alpha significantly induced adhesion properties of these cells to primary osteoblasts, suggesting a crucial role for MIP-1alpha in the regulation of the interaction between osteoclast precursors and osteoblasts in osteoclastogenesis.
- Published
- 2004
- Full Text
- View/download PDF
48. Regulation of the interleukin-1-induced signaling pathways by a novel member of the protein phosphatase 2C family (PP2Cepsilon).
- Author
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Li MG, Katsura K, Nomiyama H, Komaki K, Ninomiya-Tsuji J, Matsumoto K, Kobayashi T, and Tamura S
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Calcium-Calmodulin-Dependent Protein Kinases metabolism, Escherichia coli, Gene Expression Regulation, Enzymologic, Genes, Reporter, In Vitro Techniques, JNK Mitogen-Activated Protein Kinases, MAP Kinase Kinase 3, MAP Kinase Kinase 6, MAP Kinase Kinase Kinases metabolism, Mice, Mitogen-Activated Protein Kinase Kinases metabolism, Mitogen-Activated Protein Kinases metabolism, Molecular Sequence Data, Phosphorylation, Point Mutation, Protein Phosphatase 2C, Protein-Tyrosine Kinases metabolism, Signal Transduction drug effects, Transcription Factor AP-1 genetics, p38 Mitogen-Activated Protein Kinases, Interleukin-1 pharmacology, MAP Kinase Kinase 4, Phosphoprotein Phosphatases genetics, Phosphoprotein Phosphatases metabolism, Signal Transduction physiology
- Abstract
Although TAK1 signaling plays essential roles in eliciting cellular responses to interleukin-1 (IL-1), a proinflammatory cytokine, how the IL-1-TAK1 signaling pathway is positively and negatively regulated remains poorly understood. In this study, we investigated the possible role of a novel protein phosphatase 2C (PP2C) family member, PP2Cepsilon, in the regulation of the IL-1-TAK1 signaling pathway. PP2Cepsilon was composed of 303 amino acids, and the overall similarity of amino acid sequence between PP2Cepsilon and PP2Calpha was found to be 26%. Ectopic expression of PP2Cepsilon inhibited the IL-1- and TAK1-induced activation of mitogen-activated protein kinase kinase 4 (MKK4)-c-Jun N-terminal kinase or MKK3-p38 signaling pathway. PP2Cepsilon dephosphorylated TAK1 in vitro. Co-immunoprecipitation experiments indicated that PP2Cepsilon associates stably with TAK1 and attenuates the binding of TAK1 to MKK4 or MKK6. Ectopic expression of a phosphatase-negative mutant of PP2Cepsilon, PP2Cepsilon(D/A), which acted as a dominant negative form, enhanced both the association between TAK1 and MKK4 or MKK6 and the TAK1-induced activation of an AP-1 reporter gene. The association between PP2Cepsilon and TAK1 was transiently suppressed by IL-1 treatment of the cells. Taken together, these results suggest that, in the absence of IL-1-induced signal, PP2Cepsilon contributes to keeping the TAK1 signaling pathway in an inactive state by associating with and dephosphorylating TAK1.
- Published
- 2003
- Full Text
- View/download PDF
49. Extremely high expression of beta-actin mRNA in osteoclasts resorbing alveolar bone located at the distal area of the developing molar tooth germ in newborn rats.
- Author
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Kukita T, Kukita A, Xu L, Toh K, Tang Q, Nomiyama H, and Iijima T
- Subjects
- Alveolar Bone Loss, Animals, Animals, Newborn, Bone Resorption, In Situ Hybridization, Microscopy, Electron, Molar physiology, Osteoclasts ultrastructure, Rats, Stress, Mechanical, Tooth Germ physiology, Tooth Movement Techniques, Actins metabolism, Osteoclasts metabolism, RNA, Messenger metabolism
- Abstract
Expression of beta-actin is widely utilized as an internal control of mRNA expression in various cells. Here we show evidence that the expression level of beta-actin mRNA in osteoclasts significantly differs in its intensity according to the position in bone tissues. By use of in situ hybridization, we obtained clear data showing that osteoclasts facing the distal part of a developing molar tooth germ expressed extremely high levels of beta-actin mRNA in comparison with other osteoclasts observed in the mandibular bone surface. No signal was detected when beta-nerve growth factor transcripts were observed. Electron microscopic analysis revealed that osteoclasts localized in these areas were functionally active, estimated from the expression of high levels of the osteoclast membrane antigen, Kat1 antigen, which associated with active osteoclasts. These data suggest that osteoclasts expressing extremely high levels of beta-actin are highly related to active osteoclasts induced by the mechanical stress caused by physiological movement of molar tooth germ towards distal directions in the developing mandible.
- Published
- 2003
- Full Text
- View/download PDF
50. Comparative DNA sequence analysis of mouse and human CC chemokine gene clusters.
- Author
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Nomiyama H, Egami K, Tanase S, Miura R, Hirakawa H, Kuhara S, Ogasawara J, Morishita S, Yoshie O, Kusuda J, and Hashimoto K
- Subjects
- Animals, Chromosome Mapping, Chromosomes, Artificial, Bacterial genetics, Chromosomes, Human, Pair 17 genetics, Evolution, Molecular, Humans, Mice, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA, Species Specificity, Chemokines, CC genetics, DNA genetics, Multigene Family
- Abstract
The CC chemokines are a closely related subfamily of the chemokine superfamily. Most of the CC chemokine genes form a cluster on chromosome 11 in mice and chromosome 17 in humans. To date, 11 and 16 functional genes have been localized within the mouse and human clusters, respectively. Notably, some of the genes within these clusters appear to have no counterparts between the two species, and the orthologous relationships of some of the genes are difficult to establish solely on the basis of amino acid similarity. In this study, we have taken a comparative genomic approach to reveal some of the features that may be involved in the dynamic evolution of these gene clusters. We sequenced a 122-kb region containing five chemokine genes of the mouse CC cluster. This mouse sequence was combined with those determined by the Mouse Genome Sequencing Project, and the entire sequence of the mouse CC cluster was compared with that of the corresponding cluster in the human genome by percent identity plot and dot-plot analyses. Although no additional chemokine genes have been found in these clusters, our analysis has revealed that numerous gene rearrangements have occurred even after the diversification of rodents and primates, resulting in several species-specific chemokine genes and pseudogenes. In addition, phylogenetic analysis and comparison of the genomic sequences unambiguously identified the orthologous relationships of some of the chemokine genes in the mouse and human CC gene clusters.
- Published
- 2003
- Full Text
- View/download PDF
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