96 results on '"Piórkowska K"'
Search Results
2. Molecular characterization of the apoptosis-related SH3RF1 and SH3RF2 genes and their association with exercise performance in Arabian horses
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Ropka-Molik, K., Stefaniuk-Szmukier, M., Piórkowska, K., Szmatoła, T., and Bugno-Poniewierska, M.
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- 2018
- Full Text
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3. H-FABP and LEPR gene expression profile in skeletal muscles and liver during ontogenesis in various breeds of pigs
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Tyra, M., Ropka-Molik, K., Eckert, R., Piórkowska, K., and Oczkowicz, M.
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- 2011
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4. Genome-wide RNA-Seq analysis of breast muscles of two broiler chicken groups differing in shear force
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Piórkowska, K., Żukowski, K., Nowak, J., Połtowicz, K., Ropka-Molik, K., and Gurgul, A.
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- 2016
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5. Association between LEPR and MC4R genes polymorphisms and composition of milk from sows of dam line
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Szyndler-Nędza, M., Tyra, M., Ropka-Molik, K., Piórkowska, K., Mucha, A., Różycki, M., Koska, M., and Szulc, K.
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- 2013
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6. Association between subcutaneous and intramuscular fat content in porcine ham and loin depending on age, breed and FABP3 and LEPR genes transcript abundance
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Tyra, M., Ropka-Molik, K., Terman, A., Piórkowska, K., Oczkowicz, M., and Bereta, A.
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- 2013
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7. Psychological correlates of affect in parents of children with cleft lip and/or palate.
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CZAJECZNY, D., MATTHEWS-KOZANECKA, M., PIÓRKOWSKA, K., ZIARKO, M., MOJS, E., HOJAN-JEZIERSKA, D., and MATTHEWS-BRZOZOWSKI, A.
- Abstract
OBJECTIVE: Parents of children with developmental malformations of different kinds are vulnerable to many consequences of the experienced stress and attempts to cope with it. The aim of the study was to determine the psychological correlates of affect for parents of such children. PATIENTS AND METHODS: The study included 78 respondents: 69 women and 9 men, aged between 20 and 45, all of them parents of children with craniofacial malformations who had their routine check-ups at an orthodontics clinic. The respondents were evaluated using pencil- and-paper questionnaires, the same survey set for all respondents. The following tools were used in the study: the Inventory for Measuring Coping with Stress (Mini-COPE), the Family Resilience Assessment Scale (FRAS), and the Positive and Negative Affect Schedule (PANAS). The guardians’ demographic data and the details of the child’s medical history were gathered using a questionnaire constructed for the purposes of the study. RESULTS: The present study confirmed significant correlations between affect and preferred stress coping strategies, as well as between affect and family resilience. Coping strategies and family resilience, treated as a resource, were also significantly correlated in the group of respondents. CONCLUSIONS: Mental resilience is an important resource contributing to effective stress coping in a situation where a child suffers from malformation. [ABSTRACT FROM AUTHOR]
- Published
- 2021
8. Association of a new mobile element in predicted promoter region of ATP-binding cassette transporter 12 gene (ABCA12) with pig production traits
- Author
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Piórkowska, K., Ropka-Molik, K., Szmatoła, T., Zygmunt, K., and Tyra, M.
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- 2014
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9. The expression pattern of proteolytic enzymes of cathepsin family in two important porcine skeletal muscles
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Piórkowska, K., Ropka-Molik, K., Eckert, R., and Różycki, M.
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- 2013
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10. Detection of genetic variants between different Polish Landrace and Puławska pigs by means of RNA‐seq analysis.
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Piórkowska, K., Żukowski, K., Ropka‐Molik, K., and Tyra, M.
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RNA sequencing , *NUCLEOTIDE sequencing , *TRANSCRIPTOMES , *GENETIC mutation , *GENETIC polymorphisms - Abstract
Summary: Variant calling analysis based on RNA sequencing data provides information about gene variants. RNA‐seq is cheaper and faster than is DNA sequencing. However, it requires individual hard filters during data processing due to post‐transcriptional modifications such as splicing and RNA editing. In the present study, RNA‐seq transcriptome data on two Polish pig breeds (Puławska, PUL, n = 8, and Polish Landrace, PL, n = 8) were included. The pig breeds are significantly different with regard to meat qualities such as texture, water exudation, growth traits and fat content in carcasses. A total of 2451 significant mutations were identified by a chi square tests, and functional analysis was carried out using Panther, KEGG and Kobas. Interesting missense gene variants and mutations located in regulatory regions were found in a few genes related to fatty acid metabolism and lipid storage such as ACSL5, ALDH3A2, FADS1, SCD, PLA2G12A and ATGL. A validation of mutational influences on pig traits was performed for ALDH3A2, ATGL, PLA2G12A and MYOM1 variants using association analysis including 215 pigs of the PL and PUL breeds. The ALDH3A2ENSSSCT00000019636.2:c.470T>C polymorphism was found to affect the weight of the ham and loin eye area. In turn, an ENSSSCT00000004091.2:c.2836G>A MYOM1 mutation, which could be implicated in myofibrillar network organisation, had an effect on meatiness and loin texture parameters. The study aimed to estimate the usefulness of RNA‐seq results for a purpose other than differentially expressed gene analysis. The analysis performed indicated interesting gene variants that could be used in the future as markers during selection. [ABSTRACT FROM AUTHOR]
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- 2018
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11. Analysis of polymorphisms of cathepsin B and cystatin B impact on economically important traits in pigs raised in Poland
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Piórkowska, K., Ropka-Molik, K., Eckert, R., Tyra, M., and Żukowski, K.
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- 2012
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12. Evolution of peroxisomal trans-2-enoyl-CoA reductase (PECR) as candidate gene for meat quality.
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Piórkowska, K., Tyra, M., Ropka-Molik, K., and Podbielska, A.
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MEAT quality , *FATTY acids , *GENETIC mutation , *GENOTYPES , *CHROMOSOMES - Abstract
Peroxisomal trans-2-enoyl-CoA reductase plays a role in fatty acid elongation via the conversion of 2E-Octadecenoyl-coA to stearoyl-coA. It is encoded by the PECR gene, which is located in a QTL-rich region on chromosome 15 in pigs. Due to the function and localization of this gene, it could be supposed that it contains potential biomarkers. Therefore, in the present study regulatory sequences of the PECR gene has been analyzed. DNA was isolated from blood samples of three pig breeds: Polish Landrace (n=359), Polish Large White (n=316) and Puławska pigs (n=140). The identification of PECR mutations was performed by High-Resolution Melting and Sanger sequencing methods, and genotyping by PCR-RFLP. The association study was performed using the GLM SAS procedure. In the second part of the experiment, the profile of PECR expression dependent on pig breed and PECR genotype was evaluated (n=10 in each analyzed group) by using qPCR method and Taqman probes. A single nucleotide substitution ENSSSCT00000030284.1: c.−145T>C in a promoter region of PECR gene was found which probably alters the binding site for transcription factors. The association study showed that PECR polymorphism affects the main carcass cuts, IMF and meat texture parameters. Pigs with a TT genotype were characterized by ↓weight of ham, ↑weight of loin, ↓IMF, ↑backfat thickness, ↓loin and ↑ham texture parameters (P<0.05). The results obtained also showed that the PECR transcript profile is dependent on pig breed (P<0.001) and c.−145T>C PECR genotype (P<0.05). The T allele in Polish pig populations is rather rare. However, information concerning the effect of PECR mutation on pig traits may have significant impact in populations where the T allele is more frequent and during development of a method of genomic estimated breeding values (GEBV) in pigs. [ABSTRACT FROM AUTHOR]
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- 2017
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13. CAPN1 gene as a potential marker for growth performance and carcass characteristics in pigs.
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Ropka-Molik, K., Robert, E., Tyra, M., Piórkowska, K., Oczkowicz, M., Szyndler-Nędza, M., and Bereta, A.
- Abstract
The calcium-activated neutral proteinase 1 (CAPN1) gene, which encodes μ-calpain, is considered to be associated with the majority of meat-quality traits. The objective of the present study was to evaluate the effect of CAPN1 polymorphism on the most important slaughter, fattening and pork-quality traits. The genotype frequency of g.1429G>A polymorphism was estimated on 860 pigs represented by five breeds (Polish Landrace, Polish Large White, Pietrain, Duroc and Pulawska). In all breeds, the most frequent were pigs with an AA genotype (60-74%), with the exception of Duroc pigs where the largest number of GG animals was observed (14%). The results showed that g.1429G>A polymorphism significantly affected the number of days on test (P ≤ 0.05) and age at slaughter (P ≤ 0.01), the weight of ham and primary cuts (P ≤ 0.05, P ≤ 0.01 respectively), loin eye area (P ≤ 0.01) and average backfat thickness (P ≤0.05). The g.1429G>A single-nucleotide polymorphism showed no clear influence on complex pork-quality traits. At the present stage of research, the results obtained allow for the use of g.1429G>A polymorphism in CAPN1 gene as genetic marker in pig selection to improve several slaughter or fattening traits. Additional keywords: m-calpain, fattening trait, meat quality, pig, slaughter trait. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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14. The normalisation of CAPN gene expression in M. pectoralis superficialis in broiler lines differing in growth rate and their relationship to breast muscle tenderness.
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Piórkowska, K., Nowak, J., and Połtowicz, K.
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BROILER chickens , *PECTORALIS muscle , *GENE expression , *CALPAIN , *MESSENGER RNA , *SHEARING force , *BIOMECHANICS - Abstract
The aim of this study was to assess mRNA abundance of calpain 1 (CAPN1) and calpain 3 (CAPN3) in breast muscle of 80 fast-growing (FG) and slow-growing broilers (SG) and relate gene expression in relation to growth and Warner Bratzler (WB) shear force of breast muscle.The expression of CAPN1 and CAPN3 genes was higher in the FG compared to the SG line, but significant results were obtained only for CAPN1. The CAPN1 mRNA level was strongly dependent on line and gender interaction.Lower values of shear force were observed in the FG line, where a higher level of calpain expression was shown.A new panel of housekeeping genes (RPL4 and SDHA) for normalisation of gene expression in muscle tissues could be used in other studies of gene expression in chicken. [ABSTRACT FROM PUBLISHER]
- Published
- 2015
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15. Lack of the Associations of the Polymorphisms in IGF2, MC4 R and GNAS Genes with Reproduction Traits in Pigs and Imprinting Analysis of IGF2 Gene in Ovary and Cornus Uteri.
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Oczkowicz, M, Mucha, A, Tyra, M, Ropka‐Molik, K, and Piórkowska, K
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SOMATOMEDIN A ,MAMMAL reproduction ,SWINE ,GENETIC polymorphisms ,GENOMIC imprinting ,OVARIES ,GENETIC markers ,GENE expression ,CATTLE - Abstract
Contents In recent years, intensive attention has been put on improving reproductive performance of pigs. Several experiments aimed to identify markers associated with prolificacy, but this issue still remains open. In our study, we investigated associations between polymorphisms in IGF2, GNAS and MC4 R genes with reproductive traits of Polish Landrace and Large White pigs. We did not find any significant associations for g. GNAS314T > 324C, IGF2 intron3-g.3072G > A or g. MC4R 1426G > A in Polish Landrace and Large White pigs. In the case of IGF2 intron3-g.3072G > A, this information is of great importance, because this marker is widely implemented in pigs breeding and previous experiments suggested its role in prolificacy of pigs. We also investigated expression of IGF2 gene and showed that this gene is monoallelically expressed in reproductive organs (ovary and cornus uteri). [ABSTRACT FROM AUTHOR]
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- 2013
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16. Novel porcine housekeeping genes for real-time RT-PCR experiments normalization in adipose tissue: Assessment of leptin mRNA quantity in different pig breeds
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Piórkowska, K., Oczkowicz, M., Różycki, M., Ropka-Molik, K., and Kajtoch, A. Piestrzyńska-
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GENE expression , *ADIPOSE tissues , *MATHEMATICAL optimization , *LEPTIN , *POLYMERASE chain reaction , *SWINE breeds , *CYTOKINES , *CARRIER proteins - Abstract
Abstract: The main function of adipose tissue is energy storage and production of various cytokines and hormones, such as leptin. Leptin is a protein hormone synthesized and secreted by adipose tissue. The expression of leptin is strongly dependent on growth and luteinizing hormones, which play an important role in the brain-pituitary axis. The concentration of leptin in blood plasma increases with age and obesity and is associated with the level of leptin mRNA in adipose tissue. Selection of appropriate internal control gene (ICG) for normalization of quantitative PCR data for genes of interest is critical for interpretation of results. The estimation of leptin mRNA is important in the research on regulation of feed intake and metabolic and energy balance. Therefore, the objective of this study was to evaluate the stability of mRNA expression for a number of candidate housekeeping genes in the porcine backfat tissue across different breeds. In our study we used a freeware computer program (geNorm) to evaluate the most stable among eight ICG genes (β-actin, hypoxanthine phosphoribosyltransferase 1, TATA binding protein, glyceraldehyde-3-phosphate dehydrogenase, ornithine decarboxylase antizyme 1, 60S ribosomal protein L27, 40S ribosomal protein S29, eukaryotic elongation factor (1) in 90mRNA samples of backfat tissue. In the study we used three breeds differing in muscling: Polish Large White (n=30), Polish Landrace (n =30) and Pietrain (n =30). The results showed that the three most stable genes were ornithine decarboxylase antizyme 1 (OAZ1), 60S ribosomal protein L27 (RPL27) and β-actin (M =0.579, 0.602 and 0.607, respectively). In order to evaluate the abundance of leptin mRNA, the two most stable genes were used. The highest level of mRNA expression was obtained for PL and the lowest for Pietrain pigs. These results confirmed previous studies which showed that pigs with lean carcass were characterized by a lower level of leptin transcript compared to pigs with large fat deposit. Moreover, we analyzed relationship between C3469T Lep polymorphism and level of leptin mRNA, but did not find significant associations. Our study provides a new panel of housekeeping genes for normalization of the expression of a gene of interest in adipose tissue. [Copyright &y& Elsevier]
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- 2011
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17. Association of the melanocortin-4 receptor (MC4R) with feed intake, growth, fatness and carcass composition in pigs raised in Poland
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Piórkowska, K., Tyra, M., Rogoz, M., Ropka-Molik, K., Oczkowicz, M., and Różycki, M.
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SWINE nutrition , *SWINE growth , *SWINE carcasses , *REGULATION of ingestion , *GENETIC mutation , *LIVESTOCK genetics - Abstract
Abstract: The melanocortin-4 receptor (MC4R) is involved in feed intake regulation. A missense mutation G/A in position 1426, which causes Asp-Asn substitution at position 298 in the MC4R gene has been associated with feed intake, fatness and growth, however published results of its effect are inconsistent. In our study we evaluated an effect of missense mutations on carcass composition, growth traits and meat quality in 1191 gilts of five breeds: Polish Large White, Polish Landrace, Puławska, Pietrain and Duroc. G/A 1426 MC4R mutations were genotyped using a 7500 Real-Time PCR System (Applied Biosystem). Our observations confirm that the G allele is frequent in breeds selected for lean meat content (Pietrain – 92.4%) and rare in breed with a fat carcass (Duroc – 31.5%), which has been previously reported. Our study revealed that the A allele was associated with increased daily feed intake (AA – 2.51kg; GG – 2.31kg in the Puławska breed, P <0.05), daily gain and backfat thickness (AA – 1.67cm, GG – 1.52cm in PL, P <0.01) and decreased lean meat content (total weight of ham was 0.5kg greater in G/G than in A/A Puławska animals). We obtained an unexpected result for IMF: higher percentage of IMF was observed in the G/G genotype. [Copyright &y& Elsevier]
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- 2010
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18. Transcriptomic hallmarks of bone remodelling revealed by RNA-Seq profiling in blood of Arabian horses during racing training regime.
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Stefaniuk-Szmukier, M., Ropka-Molik, K., Piórkowska, K., Żukowski, K., and Bugno-Poniewierska, M.
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TRANSCRIPTOMES , *RNA sequencing , *BONE metabolism , *ARABIAN horses , *MUSCULOSKELETAL system - Abstract
Abstract The impact of exercises on young developing organisms is still of interest to researchers. Similarly like Thoroughbreds, Arabian horses competing at the race track. The high percent of lameness and loss of days in training are often the result of weakness in the condition of the musculoskeletal system. The objective of the presented study was to identify by RNA-Seq method, the possible skeletal system originating transcriptomic profile in peripheral blood of Arabian horses undergoing race training. Obtained results showed that one of the most significantly deregulated pathway involved in bone homeostasis was those involved in osteoclast differentiation. Among the significantly expressed molecules, we recognized twelve genes potentially involved in the metabolism of the skeletal system: BGLAP , CTSK , TYROBP , PDLIM7 , SLC9B2 , TWSG1 , NOTCH2 , IL6ST , VAV3 , NFATc1 , CLEC5A , TXLNG. The panel of identified genes should be evaluated as candidate biomarkers for bone homeostasis indicators of Arabians performing on race tracks to assess bone remodelling states during training for race track competitions. Highlights • Racing training in horses has impact on whole blood transcriptome. • Whole blood transcriptome reflects changes in bone state. • The osteoclast differentiation pathway was significantly deregulated. • We identified genes involved in bone metabolism for further evaluation as biomarkers. [ABSTRACT FROM AUTHOR]
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- 2018
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19. Frequency of DLK1 c.639C>T polymorphism and the analysis of MEG3/DLK1/PEG11 cluster expression in muscle of swine raised in Poland
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Oczkowicz, M., Ropka-Molik, K., Piórkowska, K., Różycki, M., and Rejduch, B.
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GENETIC polymorphisms , *GENE expression , *SWINE breeds , *PHENOTYPES , *MESSENGER RNA , *MUSCLES , *ZYGOTES - Abstract
Abstract: DLK1 — (Drosophila like element 1) is a paternally expressed gene, associated with the callipyge phenotype in sheep. In a present study we designed a new real-time PCR alleleic discrimination assay for genotyping of a silent C/T mutation (c.639C>T) in DLK1 gene in swine. The DLK1 c.639C>T mutation was highly polymorphic in all breeds analyzed and C allele was predominant in Landrace and Duroc while T allele was more frequent in Pietrain and Puławska breed. Moreover, we analyzed mRNA expression of DLK1 and adjacent genes — MEG3 and PEG11 in muscles of swines of different breeds raised in Poland. We did not observe significantly different expression of DLK1, MEG3 or PEG11 mRNA in any of analyzed breeds. We also attempted to assess the effect of DLK1 (c.639C>T) on the expression of genes in callipyge locus but did not find significant differences between animals with alternate genotypes (C/C and T/T homozygotes). [Copyright &y& Elsevier]
- Published
- 2011
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20. The expression pattern of myogenic regulatory factors MyoD, Myf6 and Pax7 in postnatal porcine skeletal muscles
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Ropka-Molik, K., Eckert, R., and Piórkowska, K.
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GENE expression , *MYOBLASTS , *STRIATED muscle , *GENETIC regulation , *SATELLITE cells , *HYPERTROPHY , *TRANSCRIPTION factors - Abstract
Abstract: The MyoD, Myf6 genes, which belong to the family of muscle regulatory factors (MRFs) play a major role in muscle growth and development. Therefore, they are considered as candidate genes for meat production traits in pigs. These basic helix-loop-helix (bHLH) transcription factors regulate myogenesis: they initiate the formation of muscle fibres and regulate the transcription of muscle specific genes. The paired-box transcription factor Pax7 plays critical roles during fetal development and this protein is essential for renewal and maintenance of muscle stem cells. In particular, expression of Pax7 and MyoD is correlated with presence of active satellite cells, important in hyperplastic and hypertrophic growth in skeletal muscle. The objective of the study was to investigate the level of expression of MyoD, Myf6 and Pax7 genes in porcine skeletal muscles (m. semimembranosus, m. biceps femoris, m. gracilis) in breeds differing in muscularity. Moreover, we investigated expression profile of these genes during ontogenesis in Polish Large White (PLW) and Pietrain pigs in the largest ham muscle (m. semimembranosus). Analysis of several ham muscles showed higher expression of MyoD in the Polish Landrace (PL) breed than in Pietrain and PLW pigs (m. semimembranosus P <0.001; m. biceps femoris P <0.05 and P <0.01, respectively; m. gracilis P <0.01). The level of Pax7 transcript depended on type of muscle and breed. The highest expression was in m. gracilis in Pietrain and the lowest in Polish Landrace. Our results indicate that MyoD and Pax7 genes had higher expression levels in the early stages of development in both investigated breeds. The total expression profile of MyoD and Pax7 genes suggests that higher muscularity in Pietrain pigs is associated with the presence of a greater number of active satellite stem cells compared to other breeds. The expression level of Myf6 gene does not indicate significant differences between muscles, ages and breeds. [Copyright &y& Elsevier]
- Published
- 2011
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21. Sequence analysis and expression profiling of the equine ACTN3 gene during exercise in Arabian horses.
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Ropka-Molik, K., Stefaniuk-Szmukier, M., Musiał, A.D., Piórkowska, K., and Szmatoła, T.
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GLYCOGEN , *PROTEINS - Abstract
Abstract The ACTN3 gene codes for α-actinin-3, a protein localized in the Z -line in the skeletal muscle. Actinin-3 is critical in anchoring the myofibrillar actin filaments and plays a key role in muscle contraction. ACTN3 (α-actinin-3) cross-links glycogen phosphorylase (GP), which is the key enzyme catalysing glycogen metabolism. The aim of present study was to establish the expression level of the ACTN3 gene (for both isoforms separately and together in the gene expression analysis) in the gluteus medius muscle in order to verify if the α-actinin-3 gene can be related to training intensity in Arabian horses. A structural analysis of the ACTN3 gene was performed simultaneously to identify polymorphisms that can be related to racing performance traits. Our results showed the significant decrease (p < 0.05) of ACTN3 expression in the skeletal muscle of Arabian horses during the training periods preparing for flat-racing, and this decrease differed by the intensity of the exercises. The highest mRNA abundance measured for all ACTN3 genes was detected in the muscle of untrained horses, while the lowest expression was identified at the end of the racing season when horses had fully adapted to the physical effort. This gene expression profile was confirmed for both ACTN3 isoforms. The analysis of the ACTN3 sequence allowed us to identify 14 polymorphisms, which were localized in the promoter region, the 5′UTR (7 SNPs), exons (2 SNPs) and introns (5 SNPs). Two of them, a novel c.2334C>T - splice variant and the g.1104G>A polymorphism in the promoter region, were proposed as the causative mutations that might affect gene expression. The presented gene expression analyses indicated the significant role of the ACTN3 gene in adaptation to physiological effort in horses. Due to previous reports and our findings, further studies should be conducted to verify the usage of the ACTN3 gene as a potential genetic marker for determining exercise performance in Arabian horses and other horse breeds. Highlights • Equine ACTN3 gene expression was evaluated in skeletal muscle during exercise. • The results show the exercise-induced modification of ACTN3 expression. • Intensive physiological effort affected the decrease of the ACTN3 transcript levels. • Several polymorphisms were identified in ACTN3 locus in Arabian horses. [ABSTRACT FROM AUTHOR]
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- 2019
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22. Whole transcriptome analysis of the porcine muscle tissue of breeds differing in muscularity and meat quality traits.
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Ropka-Molik, K., Żukowski, K., Eckert, R., Piórkowska, K., Oczkowicz, M., Gurgul, A., and Szmatoła, T.
- Subjects
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MEAT quality , *SWINE breeding , *GENETIC transcription , *RNA sequencing , *GENETIC markers , *CATTLE - Abstract
In pigs, an intense research have been performed in order to select genetic markers, which could be associated with important production traits and may be included in breeding program. The aim of the present study was to compare the whole gene expression profile of semimembranosus muscle from three pig breeds differing in muscularity, fatness traits and meat quality. The RNA-seq analysis was performed on 16 animals: Pietrain (5), Polish Landrace – PL (4) and Pulawska pigs (7). The transcriptome sequencing of muscle tissue ( m. semimembranosus ) was carried out on HiScanSQ System (Illumina) with 50 single-end cycles. The validation of obtained results and exact estimation of transcript abundance was performed by real-time PCR method. The present study showed the differential expression of 229 genes between Pulawska and PL pigs, and 87 between Pulawska and Pietrain ( p ≤0.05). The Pulawska breed was characterized by significantly higher expression of only 9 and 43 genes compared to Pietrain and PL pigs, respectively. Accordingly to functional annotation of DEGs, several novel genes were proposed which were involved with processes such as purine and pirymidine biosynthesis, cell cycle, protein transport and metabolism. These genes may be potentially responsible for muscle cell growth and development. On the other hand, the up-regulation of genes involved in immune processes, observed in native Pulawska pigs, may be related with a very good resistance to diseases of this breed. The different expression profile of selected genes may illustrate the effect of long-term selection to improve the meat content in carcasses conducted on pigs. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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23. Association of calpastatin gene polymorphisms and meat quality traits in pig.
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Ropka-Molik, K., Bereta, A., Tyra, M., Różycki, M., Piórkowska, K., Szyndler-Nędza, M., and Szmatoła, T.
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CALPASTATIN , *GENETIC polymorphisms , *MEAT quality , *CYTOSKELETAL proteins , *QUALITY of pork , *DATA analysis - Abstract
Abstract: Calpastatin is associated with the rate of post mortem degradation of structural proteins due to the regulation of calpain activity. In the present research, the associations between polymorphisms within 6th intron of porcine CAST gene and several meat quality traits were analyzed. The CAST gene polymorphisms affected meat colour, pH, water holding-capacity (WHC) and texture parameters (toughness, firmness, cohesiveness, chewiness, and resilience) measured in longissimus dorsi and semimembranosus muscles. The analysis performed on the most numerous breeds maintained in Poland, suggested that the most interesting polymorphisms were CAST/HpaII and CAST/RsaI, which had the greatest effect on WHC regardless of the breed analyzed and had an effect on meat pH, firmness and toughness for most breeds. Interestingly, for almost all breeds, the significant effect of both mutations on intramuscular fat content (IMF) was detected. The provided data confirmed the use of CAST gene as a genetic marker in breeding programmes which allows performing a selection focussed on improving the quality of pork. [Copyright &y& Elsevier]
- Published
- 2014
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24. Trends and Prospects in Pig Genomics and Genetics.
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Piórkowska K and Ropka-Molik K
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- Animals, Swine genetics, Genomics methods
- Abstract
Pork is one of the most commonly consumed meat in the world [...].
- Published
- 2024
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25. Identification of New Single Nucleotide Polymorphisms Potentially Related to Small Ruminant Lentivirus Infection Susceptibility in Goats Based on Data Selected from High-Throughput Sequencing.
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Materniak-Kornas M, Ropka-Molik K, Piórkowska K, Kowalik J, Szmatoła T, Sikora J, Kawęcka A, and Kuźmak J
- Abstract
Small ruminant lentivirus (SRLV) infections are spread in the flocks of sheep and goats all over the world, causing economic loss. Although only a fraction of infected animals develop disease symptoms, all of them may shed the virus, causing uncontrolled spread of the infection. Antibodies against the virus can be detected in the blood of infected animals and are the main marker of infection. Additionally, in most infected animals, proviral DNA can also be detected, but at different levels. Due to the lack of treatment or vaccines, the most effective strategy to prevent SRLV infections are control programmes introduced by several countries based on the elimination of seropositive individuals from the flock. An alternative approach, which has currently become the rationale, is an identification of host factors which may predispose certain individuals or breeds to resistance or susceptibility to small ruminant lentivirus infection. In our work, attention was paid to goats of the Carpathian breed infected with SRLV. Available RNA-seq results from the blood of 12 goats with a determined level of SRLV proviral load were used to analyse single nucleotide polymorphisms (SNPs) by the variant calling method. Six SNPs within five genes ( POU2AF1 , BCAT2 , TMEM154 , PARP14 , UBASH3A ) were selected for genotyping to determine their association with the level of small ruminant lentivirus proviral DNA in a group of 60 goats. Interestingly, in seronegative individuals, only the TT genotype of the PARP14 gene was observed, while the TMEM154 CC genotype was found only in seropositive goats. Both genes may be considered potential markers for resistance/susceptibility to SRLV infection. In contrast, polymorphisms identified in POU2AF1 and UBASH3A genes seemed to be deleterious for respective protein functions; therefore, these genes are less likely to be recognised as resistance/susceptibility markers of SRLV infection.
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- 2024
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26. Deregulation of oxidative phosphorylation pathways in embryos derived in vitro from prepubertal and pubertal heifers based on whole-transcriptome sequencing.
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Traut M, Kowalczyk-Zieba I, Boruszewska D, Jaworska J, Gąsiorowska S, Lukaszuk K, Ropka-Molik K, Piórkowska K, Szmatoła T, and Woclawek-Potocka I
- Subjects
- Animals, Cattle, Female, Transcriptome, Sexual Maturation genetics, Oocytes metabolism, Gene Expression Regulation, Developmental, Fertilization in Vitro veterinary, Oxidative Phosphorylation, Gene Expression Profiling, Blastocyst metabolism
- Abstract
Background: Although, oocytes from prepubertal donors are known to be less developmentally competent than those from adult donors it does not restrain their ability to produce full-term pregnancies. The transcriptomic profile of embryos could be used as a predictor for embryo's individual developmental competence. The aim of the study was to compare transcriptomic profile of blastocysts derived from prepubertal and pubertal heifers oocytes. Bovine cumulus-oocyte complexes (COCs) were obtained by ovum pick- up method from prepubertal and pubertal heifers. After in vitro maturation COCs were fertilized and cultured to the blastocyst stage. Total RNA was isolated from both groups of blastocysts and RNA-seq was performed. Gene ontology analysis was performed by DAVID (Database for Annotation, Visualization and Integrated Discovery)., Results: A higher average blastocyst rate was obtained in the pubertal than in the pre-pubertal group. There were no differences in the quality of blastocysts between the examined groups. We identified 436 differentially expressed genes (DEGs) between blastocysts derived from researched groups, of which 247 DEGs were downregulated in blastocysts derived from pubertal compared to prepubertal heifers oocytes, and 189 DEGs were upregulated. The genes involved in mitochondrial function, including oxidative phosphorylation (OXPHOS) were found to be different in studied groups using Kyoto Encyclopedia of Genes (KEGG) pathway analysis and 8 of those DEGs were upregulated and 1 was downregulated in blastocysts derived from pubertal compared to prepubertal heifers oocytes. DEGs associated with mitochondrial function were found: ATP synthases (ATP5MF-ATP synthase membrane subunit f, ATP5PD- ATP synthase peripheral stalk subunit d, ATP12A- ATPase H+/K + transporting non-gastric alpha2 subunit), NADH dehydrogenases (NDUFS3- NADH: ubiquinone oxidoreductase subunit core subunit S3, NDUFA13- NADH: ubiquinone oxidoreductase subunit A13, NDUFA3- NADH: ubiquinone oxidoreductase subunit A3), cytochrome c oxidase (COX17), cytochrome c somatic (CYCS) and ubiquinol cytochrome c reductase core protein 1 (UQCRC1). We found lower number of apoptotic cells in blastocysts derived from oocytes collected from prepubertal than those obtained from pubertal donors., Conclusions: Despite decreased expression of genes associated with OXPHOS pathway in blastocysts from prepubertal heifers oocytes, the increased level of ATP12A together with the lower number of apoptotic cells in these blastocysts might support their survival after transfer., (© 2024. The Author(s).)
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- 2024
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27. MALAT1 : A Long Non-Coding RNA with Multiple Functions and Its Role in Processes Associated with Fat Deposition.
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Piórkowska K, Zygmunt K, Hunter W, and Wróblewska K
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- Animals, Humans, Adipose Tissue metabolism, Adipogenesis, RNA, Long Noncoding genetics, Lipid Metabolism
- Abstract
Metastasis-associated lung adenocarcinoma transcript 1 ( MALAT1 ) belongs to the lncRNA molecules, which are involved in transcriptional and epigenetic regulation and the control of gene expression, including the mechanism of chromatin remodeling. MALAT1 was first discovered during carcinogenesis in lung adenocarcinoma, hence its name. In humans, 66 of its isoforms have been identified, and in pigs, only 2 are predicted, for which information is available in Ensembl databases (Ensembl Release 111). MALAT1 is expressed in numerous tissues, including adipose, adrenal gland, heart, kidney, liver, ovary, pancreas, sigmoid colon, small intestine, spleen, and testis. MALAT1 , as an lncRNA, shows a wide range of functions. It is involved in the regulation of the cell cycle, where it has pro-proliferative effects and high cellular levels during the G1/S and mitotic (M) phases. Moreover, it is involved in invasion, metastasis, and angiogenesis, and it has a crucial function in alternative splicing during carcinogenesis. In addition, MALAT1 plays a significant role in the processes of fat deposition and adipogenesis. The human adipose tissue stem cells, during differentiation into adipocytes, secrete MALAT1 as one the most abundant lncRNAs in the exosomes. MALAT1 expression in fat tissue is positively correlated with adipogenic FABP4 and LPL . This lncRNA is involved in the regulation of PPARγ at the transcription stage, fatty acid metabolism, and insulin signaling. The wide range of MALAT1 functions makes it an interesting target in studies searching for drugs to prevent obesity development in humans. In turn, in farm animals, it can be a source of selection markers to control the fat tissue content.
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- 2024
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28. Equine Metabolic Syndrome: A Complex Disease Influenced by Multifactorial Genetic Factors.
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Stefaniuk-Szmukier M, Piórkowska K, and Ropka-Molik K
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- Animals, Horses, Obesity genetics, Insulin, Genetic Background, Glucose, Metabolic Syndrome genetics, Metabolic Syndrome veterinary
- Abstract
Equine metabolic syndrome (EMS) has become an important issue in modern veterinary medicine and is linked to the common, extremely painful, most-of-the-time performance-terminating hoof laminitis. The growing knowledge in the field of genetic background, inducing environmental factors, diagnosis, treatment and maintenance of affected equines led us to summarise the available information to be used not only for scientific purposes but for fieldwork. In horses, the clinical presentation of EMS includes: obesity or local fat deposition, bilateral lameness or hoof rings attributed to ongoing or previous (pasted) laminitis with the key feature of the occurrence of insulin dysregulation, disturbing the homeostasis within insulin, glucose and lipid metabolism. The management of EMS is based on dietary and fitness discipline; however, intensive research is ongoing in the field of regenerative medicine to develop modern and promising therapies.
- Published
- 2023
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29. Influence of Media Composition on the Level of Bovine Satellite Cell Proliferation.
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Zygmunt K, Otwinowska-Mindur A, Piórkowska K, and Witarski W
- Abstract
It is predicted that already in 2040, 35% of requirements for meat will be provided by in vitro production. Recreating the course of myogenesis in vitro, and thus resembling a structure of muscle tissue, is the basis for research focusing on obtaining cultured meat and requires providing relevant factors supporting the proliferation of satellite cells-being precursors of skeletal muscles. The present work aimed to develop the composition of the medium that would most effectively stimulate the proliferation of bovine satellite cells (BSCs). The modeling and optimization methods included the measurements of the synergistic, co-stimulatory effect of three medium components: the amount of glucose, the type of serum (bovine or horse), and the amount of mitogenic factor-bFGF. Additionally, the qPCR analyses determined the expression of genes involved in myogenesis, such as Pax7 and Myogenic Regulatory Factors, depending on the level of the tested factor. The results showed significant positive effects of serum type (bovine serum) and mitogenic factor (addition of 10 ng/mL bFGF) on the proliferation rate. In turn, qPCR analysis displayed no significant differences in the relative expression level of Pax7 genes and MRF factors for both factors. However, a statistically higher Pax7 and Myf5 gene expression level was revealed when a low glucose medium was used ( p < 0.05). In conclusion, the components of the medium, such as bovine serum and the addition of a mitogenic factor at the level of 10 ng/mL, ensure a higher proliferation rate of BSCs and lower glucose content ensured the expression of crucial genes in the self-renewal of the satellite cell population.
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- 2023
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30. The Effect of BSCL2 Gene on Fat Deposition Traits in Pigs.
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Piórkowska K, Sroka J, Żukowski K, Zygmunt K, Ropka-Molik K, and Tyra M
- Abstract
BSCL2 encodes seipin, a transmembrane endoplasmic reticulum protein associated with lipodystrophy and severe metabolic complications, including diabetes and hepatic steatosis. In pigs, BSCL2 expression increases during adipocyte differentiation. In the present study, we identified significant gene variants associated with fat deposition (FD)-related processes based on subcutaneous fat tissue RNA-seq data. In the association study, to prove our hypothesis, three Polish pig breeds were included: Złotnicka White (ZW, n = 72), Polish Landrace (PL, n = 201), and Polish Large White (PLW, n = 169). Based on variant calling analysis and χ
2 tests, BSCL2 mutations showing significantly different genotype/allele distribution between high- and low-fat pigs were selected for a comprehensive association study. Four interesting BSCL2 variants (rs346079334, rs341493267, rs330154033, and rs81333153) belonging to downstream and missense mutations were investigated. Our study showed a significant decrease in minor allele frequency for two BSCL2 variants (rs346079334 and rs341493267) in PL pigs in 2020-2021. In ZW, BSCL2 mutations significantly affected loin and ham fats, meat redness, and growth performance traits, such as feed conversion and daily feed intake. Similar observations were noted for PLW and PL, where BSCL2 mutations influenced fat depositions and meat traits, such as loin eye area, loin mass and fat, carcass yield, and growth performance traits. Based on the observation in pigs, our study supports the theory that BSCL2 expressed in subcutaneous fat is involved in the FD process.- Published
- 2023
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31. Profiling of genetic markers useful for breeding decision in Selle Francais horse.
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Ayad A, Besseboua O, Aissanou S, Stefaniuk-Szmukier M, Piórkowska K, Musiał AD, Długosz B, Kozłowska A, and Ropka-Molik K
- Subjects
- Alleles, Animals, Female, Gait genetics, Genetic Markers genetics, Horses genetics, Phenotype, Polymorphism, Restriction Fragment Length, Cerebellar Diseases genetics, Cerebellar Diseases veterinary, Horse Diseases genetics, Muscular Diseases genetics, Muscular Diseases veterinary
- Abstract
Genetic disorders are recognised as hereditary diseases with the most significant economic impact on horse breeding, causing important foal losses, costs of treatments of horses, and maintenance of the mare during the pregnancy. The Selle Francais horses are recognized in many countries and are showing great results in equestrian sports around the world (dressage, show jumping and eventing). The study aimed to detect the presence of three mutant alleles associated with inherited diseases including Fragile Foal Syndrome (FFS), Cerebellar Abiotrophy (CA), Polysaccharide Storage Myopathy (PSSM1) and variant impacting gait type in DMRT3. This trait is important for breeding decision in Selle Francais horses and sheds new light on genetic potential and risks on this breed. The genotyping was performed on 91 Selle Francais horses using PCR-RFLP (for POLD1; GYS1 and DMRT3 genes) and PCR-ACRS (TOE1 gene) methods. The presented report indicated the presence of mutant allele A casual for PSSM1 and allele T associated with FFS syndrome occurrence, in 4% and 6% of analysed horses, respectively. Regarding CA, the present survey did not register any cases of this genetic disorder in Selle Francais horses. Our results show also that about 1% of all the Sell Francais horses studied carry the A allele of DMRT3 gene. The present findings have provided data for these fulness of monitoring genetic diseases and gait type in the investigated breed to avoid losses of offspring., Competing Interests: Declaration Competing of Interest No competing interests have been declared., (Copyright © 2022. Published by Elsevier Inc.)
- Published
- 2022
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32. Variations in Fibrinogen-like 1 ( FGL1 ) Gene Locus as a Genetic Marker Related to Fat Deposition Based on Pig Model and Liver RNA-Seq Data.
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Piórkowska K, Żukowski K, Ropka-Molik K, and Tyra M
- Subjects
- Animals, Genetic Markers, Genotype, RNA-Seq, Swine genetics, Fibrinogen, Liver
- Abstract
The goal of this study was to evaluate the effects of mutations in the FGL1 gene associated with pig productive traits to enrich the genetic marker pool for further selection and to support the studies on FGL1 in the context of the fat deposition (FD) process. The variant calling and χ
2 analyses of liver RNA-seq data were used to indicate genetic markers. FGL1 mutations were genotyped in the Złotnicka White (n = 72), Polish Large White (n = 208), Duroc (n = 72), Polish Landrace (PL) (n = 292), and Puławska (n = 178) pig breeds. An association study was performed using a general linear model (GLM) implemented in SAS® software. More than 50 crucial mutations were identified in the FGL1 gene. The association study showed a significant effect of the FGL1 on intramuscular fat (IMF), loin eye area, backfat thickness at the lumbar, ham mass ( p = 0.0374), meat percentage ( p = 0.0205), and loin fat ( p = 0.0003). Alternate homozygotes and heterozygotes were found in the PL and Duroc, confirming the selective potential for these populations. Our study supports the theory that liver FGL1 is involved in the FD process. Moreover, since fat is the major determinant of flavor development in meat, the FGL1 rs340465447_A allele can be used as a target in pig selection focused on elevated fat levels.- Published
- 2022
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33. Hypothalamus-pituitary axis transcriptomic modification dependent on growth rate in geese (Anser anser domesticus).
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Piórkowska K, Żukowski K, Połtowicz K, Witarski W, Nowak J, Potocka P, and Ropka-Molik K
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- Animals, Geese growth & development, Gene Expression Profiling veterinary, Male, Geese genetics, Gene Expression Regulation, Hypothalamo-Hypophyseal System metabolism, Transcriptome
- Abstract
The hypothalamus-pituitary axis is involved in digest processing, stress response, energy storage and many other processes. In birds, this control differs from in mammals, such as regulation of appetite and satiety centre. The transcriptomics analyses of both brain structures can explain and identify the molecular processes related to body growth and development and nutritional status. Many reports describe chicken transcriptome in literature, but gene expression studies in the other poultry species are extremely rare. Therefore, the present research undertook the attempt to explain hypothalamus-pituitary processes in domestic geese-Polish White Kołuda®, main Polish line. After 16 weeks of fattening, significant differences in geese weight were observed. Therefore, transcriptome of pituitary and hypothalamus profiles could be compared between low and high growth rate geese groups. Due to the lack of domestic geese genome assembly in the public databases, we used three mapping approaches: de novo analysis, mapping to two other pink-footed and swan geese genomes. The functional examination showed that the most enriched biological process in the geese hypothalamus covered the immune response. Moreover, in the hypothalamus, proteins typical for the pituitary such as PRL and GH were differentially expressed (DE). Our study recommends one gene as a candidate for growth rate in geese-the FOS gene, which encodes Fos proto-oncogene-DE in both analysed tissues. The FOS gene is involved in regulating feeding behaviour, immune regulation, stimulating cellular proliferation and controlling growth hormone synthesis. Moreover, the present investigation indicates DE genes involved in gene expression regulation. The study delivers new information about the changes in the pituitary-hypothalamic axis in geese dependent on growth rate differences., (© 2021 Stichting International Foundation for Animal Genetics.)
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- 2021
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34. Investigation of Cerebellar Abiotrophy (CA), Lavender Foal Syndrome (LFS), and Severe Combined Immunodeficiency (SCID) Variants in a Cohort of Three MENA Region Horse Breeds.
- Author
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Ayad A, Almarzook S, Besseboua O, Aissanou S, Piórkowska K, Musiał AD, Stefaniuk-Szmukier M, and Ropka-Molik K
- Subjects
- Africa, Northern, Alleles, Animals, Cohort Studies, Heterozygote, Middle East, Polymorphism, Single Nucleotide genetics, Cerebellar Diseases genetics, Horse Diseases genetics, Horses genetics, Severe Combined Immunodeficiency genetics
- Abstract
Genetic disorders in horses are mostly fatal or usually cause significant economic losses for breeders and owners. Here we studied a total of 177 Arabian, Barb and Arab-Barb horses from the Middle East and North Africa (MENA) using Sanger Sequencing and PCR-ACRS (polymerase chain reaction-artificially created restriction site) approaches to examine the genetic disorders in the studied horse breeds. We identified the genetic variations related to Cerebellar Abiotrophy (CA), Severe Combined Immunodeficiency (SCID) occurrence, and the studied population was free of the mutant allele determined Lavender Foal Syndrome (LFS). Overall, presented data showed that 15 of the studied horses are carriers of two genetic disorders; the investigated horse population showed that five Arabian horses were heterozygous for the CA-associated SNP (rs397160943). The SCID-deletion TCTCA within PRKDC was detected in ten horses (nine Arabian horses and one Arab-Barb horse). This investigation shows the importance of testing these breeds for genetic disorders to avoid further spread of deleterious variants.
- Published
- 2021
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35. Pig Genomics and Genetics.
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Piórkowska K and Ropka-Molik K
- Subjects
- Animals, Genetic Association Studies veterinary, Genetics, Population methods, Genomics methods, Sequence Analysis, RNA veterinary, Sus scrofa genetics
- Abstract
The pig (Sus scrofa) is the most popular large farm animal in the world [...].
- Published
- 2021
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36. Transcriptome Analysis for Genes Associated with Small Ruminant Lentiviruses Infection in Goats of Carpathian Breed.
- Author
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Olech M, Ropka-Molik K, Szmatoła T, Piórkowska K, and Kuźmak J
- Subjects
- Adaptive Immunity genetics, Animals, Gene Expression genetics, Gene Expression Profiling methods, Gene Expression Regulation genetics, Goat Diseases virology, Goats genetics, Host Microbial Interactions genetics, Immunity, Innate genetics, Lentivirus Infections veterinary, Lentiviruses, Ovine-Caprine genetics, Proviruses genetics, Sequence Analysis, RNA, Transcriptome genetics, Viral Load methods, Virus Replication, Arthritis-Encephalitis Virus, Caprine genetics, Goats virology, Visna-maedi virus genetics
- Abstract
Small ruminant lentiviruses (SRLV) are economically important viral pathogens of sheep and goats. SRLV infection may interfere in the innate and adaptive immunity of the host, and genes associated with resistance or susceptibility to infection with SRLV have not been fully recognized. The presence of animals with relatively high and low proviral load suggests that some host factors are involved in the control of virus replication. To better understand the role of the genes involved in the host response to SRLV infection, RNA sequencing (RNA-seq) method was used to compare whole gene expression profiles in goats carrying both a high (HPL) and low (LPL) proviral load of SRLV and uninfected animals. Data enabled the identification of 1130 significant differentially expressed genes (DEGs) between control and LPL groups: 411 between control and HPL groups and 1434 DEGs between HPL and LPL groups. DEGs detected between the control group and groups with a proviral load were found to be significantly enriched in several gene ontology (GO) terms, including an integral component of membrane, extracellular region, response to growth factor, inflammatory and innate immune response, transmembrane signaling receptor activity, myeloid differentiation primary response gene 88 (MyD88)-dependent toll-like receptor signaling pathway as well as regulation of cytokine secretion. Our results also demonstrated significant deregulation of selected pathways in response to viral infection. The presence of SRLV proviral load in blood resulted in the modification of gene expression belonging to the toll-like receptor signaling pathway, the tumor necrosis factor (TNF) signaling pathway, the cytokine-cytokine receptor interaction, the phagosome, the Ras signaling pathway, the phosphatidylinositol 3-kinase (PI3K)/protein kinase B (AKT) (PI3K-Akt) signaling pathway and rheumatoid arthritis. It is worth mentioning that the most predominant in all pathways were genes represented by toll-like receptors, tubulins, growth factors as well as interferon gamma receptors. DEGs detected between LPL and HPL groups were found to have significantly enriched regulation of signaling receptor activity, the response to toxic substances, nicotinamide adenine dinucleotide (NADH) dehydrogenase complex assembly, cytokine production, vesicle, and vacuole organization. In turn, the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway tool classified DEGs that enrich molecular processes such as B and T-cell receptor signaling pathways, natural killer cell-mediated cytotoxicity, Fc gamma R-mediated phagocytosis, toll-like receptor signaling pathways, TNF, mammalian target of rapamycin (mTOR) signaling and forkhead box O (Foxo) signaling pathways, etc. Our data indicate that changes in SRLV proviral load induced altered expression of genes related to different biological processes such as immune response, inflammation, cell locomotion, and cytokine production. These findings provide significant insights into defense mechanisms against SRLV infection. Furthermore, these data can be useful to develop strategies against SRLV infection by selection of animals with reduced SRLV proviral concentration that may lead to a reduction in the spread of the virus.
- Published
- 2021
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37. Microsatellite-Based Genetic Structure and Hybrid Detection in Alpacas Bred in Poland.
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Podbielska A, Piórkowska K, and Szmatoła T
- Abstract
This study aimed to characterize the population structure and genetic diversity of alpacas maintained in Poland using 17 microsatellite markers recommended by the International Society for Animal Genetics. The classification of llamas, alpacas, and hybrids of both based on phenotype is often difficult due to long-term admixture. Our results showed that microsatellite markers can distinguish alpacas from llamas and provide information about the level of admixture of one species in another. Alpacas admixed with llamas constituted 8.8% of the tested individuals, with the first-generation hybrid displaying only 7.4% of llama admixture. The results showed that Poland hosts a high alpaca genetic diversity as a consequence of their mixed origin. More than 200 different alleles were identified and the average observed heterozygosity and expected heterozygosity values were 0.745 and 0.768, respectively, the average coefficient of inbreeding was 0.034, and the average polymorphism information content value was 0.741. The probability of exclusion for one parent was estimated at 0.99995 and for two parents at 0.99999.
- Published
- 2021
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38. Single Nucleotide Polymorphisms in Genes Encoding Toll-Like Receptors 7 and 8 and Their Association with Proviral Load of SRLVs in Goats of Polish Carpathian Breed.
- Author
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Olech M, Ropka-Molik K, Szmatoła T, Piórkowska K, and Kuźmak J
- Abstract
Toll-like receptors (TLRs) 7 and 8 are important in single-stranded viral RNA recognition, so genetic variation of these genes may play a role in SRLVs infection and disease progression. Present study aimed to identify SNPs in genes encoding TLR7 and TLR8 in goats of Carpathian breed and analyze their association with the SRLVs provirus concentration as index of disease progression. A total of 14 SNPs were detected, 6 SNPs in the TLR7 gene locus and 8 SNPs in the TLR8 gene. Nine of the 14 identified polymorphisms, 4 in the TLR7 gene and 5 in TLR8 gene, were significantly associated with the SRLVs proviral concentration. These SNPs were located in 3'UTR, 5'UTR and intron sequences as well as in the coding sequences, but they led to silent changes. Homozygous genotypes of three TLR7 SNPs (synonymous variant 1:50703293, 3'UTR variant 1:50701297 and 5'UTR variant 1:50718645) were observed in goats with lower provirus copy number as well as in seronegative animals. The results obtained in this study suggest that SNPs of TLR7/TLR8 genes may induce differential innate immune response towards SRLVs affecting proviral concentration and thereby disease pathogenesis and progression. These findings support a role for genetic variations of TLR7 and TLR8 in SRLVs infection and warrants further studies on the effect of TLR7/TLR8 polymorphisms on SRLVs infection in different populations.
- Published
- 2021
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39. Low diversity of mitochondrial DNA in fancy pigeons (Columba livia) revealed by partial D-loop sequencing.
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Stefaniuk-Szmukier M, Andres K, Piórkowska K, and Ropka-Molik K
- Subjects
- Animals, Breeding, Haplotypes, Columbidae genetics, DNA, Mitochondrial genetics, Genetic Variation
- Published
- 2021
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40. Transcriptome Profiling of the Retained Fetal Membranes-An Insight in the Possible Pathogenesis of the Disease.
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Jaworska J, Ropka-Molik K, Piórkowska K, Szmatoła T, Kowalczyk-Zięba I, Wocławek-Potocka I, and Siemieniuch M
- Abstract
Retained fetal membranes (RFM) is one of the most common post-partum diseases of a complex etiology. Moreover, its pathogenesis is still not elucidated. Detailed transcriptomic analysis of physiological and retained placenta may bring profound insight in the pathogenesis of the disease. The aim of the study was to compare the transcriptome of the retained and physiologically released placenta as well as biological pathways and processes in order to determine the possible pathogenesis of the disease. Samples of the endometrium and the allantochorion were taken within 2 h after parturition from control mares ( n = 3) and mares with RFM ( n = 3). RNA sequencing was performed with the use of all samples and mRNA expression of chosen genes was validated with Real Time PCR. Analysis of RNA-seq identified 487 differentially expressed genes in the allantochorion and 261 in the endometrium of control and RFM mares ( p < 0.0001). Within genes that may be important in the release of fetal membranes and were differentially expressed, our report pinpointed BGN, TIMP1, DRB, CD3E, C3, FCN3, CASP3, BCL2L1. Gene ontology analysis showed possible processes which were altered in RFM that are apoptosis, inflammatory-related processes, and extracellular matrix metabolism and might be involved in the pathogenesis of RFM. This is the first report on the transcriptome of RFM and physiologically released placenta in mares.
- Published
- 2021
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41. Distribution of the Warmblood Fragile Foal Syndrome Type 1 Mutation (PLOD1 c.2032G>A) in Different Horse Breeds from Europe and the United States.
- Author
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Reiter S, Wallner B, Brem G, Haring E, Hoelzle L, Stefaniuk-Szmukier M, Długosz B, Piórkowska K, Ropka-Molik K, Malvick J, Penedo MCT, and Bellone RR
- Subjects
- Alleles, Animals, Breeding, Datasets as Topic, Europe epidemiology, Horse Diseases epidemiology, Horses classification, Mutation, Missense, Point Mutation, Skin Diseases, Genetic epidemiology, Skin Diseases, Genetic genetics, Species Specificity, United States epidemiology, Horse Diseases genetics, Horses genetics, Procollagen-Lysine, 2-Oxoglutarate 5-Dioxygenase genetics, Skin Diseases, Genetic veterinary
- Abstract
Warmblood fragile foal syndrome (WFFS) is an autosomal recessive disorder caused by a single nucleotide variant in the procollagen-lysine-2-oxoglutarate-5-dioxygenase 1 gene (PLOD1:c.2032G>A, p.Gly678Arg). Homozygosity for the PLOD1 variant causes an Ehler-Danlos-like syndrome, which has to date only been reported in warmblood breeds but the WFFS allele has been also detected in the Thoroughbred. To investigate the breed distribution of the WFFS allele, 4081 horses belonging to 38 different breeds were screened. In total, 4.9% of the horses representing 21 breeds carried the WFFS allele. The affected breeds were mainly warmbloods, with carrier frequency as high as 17% in the Hanoverian and Danish Warmblood. The WFFS allele was not detected in most non-warmblood breeds. Exceptions include WFFS carriers in the Thoroughbred (17/716), Haflinger (2/48), American Sport Pony (1/12), and Knabstrupper (3/46). The origin of the WFFS allele remains unknown. The Arabian breed and specifically the stallion Bairactar Or. Ar. (1813), whose offspring were reported to have a similar phenotype in the 19th century, were hypothesized as the origin. DNA from a museum sample of Bairactar Or. Ar. showed that he did not carry the mutated allele. This result, together with the genotypes of 302 Arabians, all homozygous for the reference allele, does not support an Arabian origin of the WFFS allele. Our extensive survey shows the WFFS allele to be of moderate frequency and concern in warmbloods and also in breeds where it may not be expected.
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- 2020
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42. Variability of ACOX1 Gene Polymorphisms across Different Horse Breeds with Regard to Selection Pressure.
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Myćka G, Musiał AD, Stefaniuk-Szmukier M, Piórkowska K, and Ropka-Molik K
- Abstract
The ACOX1 gene encodes peroxisomal acyl-coenzyme A oxidase 1, the first enzyme in the fatty acid β-oxidation pathway, which could be significant for organisms exposed to long periods of starvation and harsh living conditions. We hypothesized that variations within ACOX1 , revealed by RNA Sequencing (RNA-Seq), might be based on adaptation to living conditions and had resulted from selection pressure. There were five different horse breeds used in this study, representing various utility types: Arabian, Thoroughbred, Polish Konik, draft horses, and Hucul. The single-nucleotide polymorphism (SNP) located in the ACOX1 (rs782885985) was used as a marker and was identified using the PCR restriction fragment length polymorphism method (PCR-RFLP). Results indicated extremely different genotype and allele distributions of the ACOX1 gene across breeds. A predominance of the G allele was exhibited in horses that had adapted to difficult environmental conditions, namely, Polish Konik and Huculs, which are considered to be primitive breeds. The prevalence of the T allele in Thoroughbreds indicated that ACOX1 is significant in energy metabolism during flat racing.
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- 2020
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43. Identification of candidate genes and regulatory factors related to growth rate through hypothalamus transcriptome analyses in broiler chickens.
- Author
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Piórkowska K, Żukowski K, Połtowicz K, Nowak J, Ropka-Molik K, Derebecka N, Wesoły J, and Wojtysiak D
- Subjects
- Animals, Gene Expression Profiling, Male, Meat, Neuropeptide Y genetics, Chickens genetics, Hypothalamus
- Abstract
Background: Intensive selection for growth rate (GR) in broiler chickens carries negative after-effects, such as aberrations in skeletal development and the immune system, heart failure, and deterioration of meat quality. In Poland, fast-growing chicken populations are highly non-uniform in term of growth rate, which is highly unprofitable for poultry producers. Therefore, the identification of genetic markers for boiler GR that could support the selection process is needed. The hypothalamus is strongly associated with growth regulation by inducing important pituitary hormones. Therefore, the present study used this tissue to pinpoint genes involved in chicken growth control., Results: The experiment included male broilers of Ross 308 strain in two developmental stages, after 3rd and 6th week of age, which were maintained in the same housing and feeding conditions. The obtained results show for the overexpression of genes related to orexigenic molecules, such as neuropeptide Y (NPY), aldehyde dehydrogenase 1 family, member A1 (ALDH1A1), galanin (GAL), and pro-melanin concentrating hormone (PMCH) in low GR cockerels., Conclusion: The results reveal strong associations between satiety centre and the growth process. The present study delivers new insights into hypothalamic regulation in broiler chickens and narrows the area for the searching of genetic markers for GR.
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- 2020
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44. Identification of Molecular Mechanisms Related to Pig Fatness at the Transcriptome and miRNAome Levels.
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Ropka-Molik K, Pawlina-Tyszko K, Żukowski K, Tyra M, Derebecka N, Wesoły J, Szmatoła T, and Piórkowska K
- Subjects
- Adipocytes metabolism, Adipogenesis genetics, Adipose Tissue growth & development, Adipose Tissue metabolism, Animals, Gene Expression Profiling, High-Throughput Nucleotide Sequencing, Leptin genetics, Lipid Metabolism genetics, Meat, Swine physiology, Genetic Fitness genetics, MicroRNAs genetics, Swine genetics, Transcriptome genetics
- Abstract
Fat deposition and growth rate are closely related to pork quality and fattening efficiency. The next-generation sequencing (NGS) approach for transcriptome and miRNAome massive parallel sequencing of adipocyte tissue was applied to search for a molecular network related to fat deposition in pigs. Pigs were represented by three breeds (Large White, Pietrain, and Hampshire) that varied in fat content within each breed. The obtained results allowed for the detection of significant enrichment of Gene Ontology (GO) terms and pathways associated directly and indirectly with fat deposition via regulation of fatty acid metabolism, fat cell differentiation, inflammatory response, and extracellular matrix (ECM) organization and disassembly. Moreover, the results showed that adipocyte tissue content strongly affected the expression of leptin and other genes related to a response to excessive feed intake. The findings indicated that modification of genes and miRNAs involved in ECM rearrangements can be essential during fat tissue growth and development in pigs. The identified molecular network within genes and miRNAs that were deregulated depending on the subcutaneous fat level are proposed as candidate factors determining adipogenesis, fatness, and selected fattening characteristics in pigs.
- Published
- 2020
- Full Text
- View/download PDF
45. Use of the HRM Method in Quick Identification of FecX O Mutation in Highly Prolific Olkuska Sheep.
- Author
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Smołucha G, Piórkowska K, Ropka-Molik K, and Sikora J
- Abstract
Olkuska is a highly prolific sheep breed in Poland. Thanks to earlier identification of the genetic basis of its prolificacy, a mutation in the BMP-15 gene, we can use molecular biology tools to identify this causative mutation affecting prolificacy. In our research, we used the High-Resolution Melting (HRM) and Sanger sequencing methods to identify the genotypes of the studied animals. The result obtained by the HRM method is identical to those obtained by the sequencing method, which confirms the effectiveness of the HRM method and the possibility of quick and cheap identification of individuals with a FecX
O mutation.- Published
- 2020
- Full Text
- View/download PDF
46. Evaluation of SCD, ACACA and FASN Mutations: Effects on Pork Quality and Other Production Traits in Pigs Selected Based on RNA-Seq Results.
- Author
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Piórkowska K, Małopolska M, Ropka-Molik K, Szyndler-Nędza M, Wiechniak A, Żukowski K, Lambert B, and Tyra M
- Abstract
In recent years, pig producers have struggled with the problem of low intramuscular fat levels in pork, which impacts palatability and ultimately meat quality. Reduced levels of intramuscular fat are likely the result of breeding objectives aimed at increasing lean meat content. In this study, three mutations within candidate genes for fat content ( SCD, ACACA, and FASN) were selected, based on RNA-seq results and the relationship between polymorphisms in genes related to lipid metabolism, fattening and slaughter characteristics, as well as pork quality, including IMF level, were evaluated to identify selection markers. Moreover, their impact on gene expression was also examined. The PCR-RFLP (polymerase cha- in reaction - restriction fragments length) method was used to establish genotypes and effect sizes of potential genetic markers were estimated using a GLM model. It was identified that a FASN missense variant was positively associated with the expression level of this gene, which suggested its linkage with a mutation having a regulatory function. The association study indicated that the FASN missense variant may play a role in the determination of feed conversion and meat colour. In turn, a mutation in the ACACA gene showed a relationship with IMF content in the Puławska breed where the differences reached as much as 20%. We suggest considering all three mutations in further studies based on different pig populations due to the crucial role of SCD, ACACA, and FASN genes in lipid metabolism.
- Published
- 2020
- Full Text
- View/download PDF
47. ACTN3 genotype distribution across horses representing different utility types and breeds.
- Author
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Musiał AD, Ropka-Molik K, Piórkowska K, Jaworska J, and Stefaniuk-Szmukier M
- Subjects
- Animals, Breeding, Gene Frequency genetics, Genetic Markers genetics, Genotype, Polymorphism, Single Nucleotide genetics, Actinin genetics, Athletic Performance, Horses classification, Horses genetics, Horses physiology
- Abstract
In horses, the identification of the genetic background of phenotypic variation, especially with regard to performance characteristics and predisposition to effort, has been extensively studied. As α-actinin-3 function is related to the regulation of muscle contraction and cell metabolism, the ACTN3 gene is considered one of the main genetic factors determining muscle strength. The aim of the present study was to assess the genotype distribution of two SNP variants within the equine ACTN3 gene (g.1104G > A and c.2334C > T) across different utility types and horse breeds. The analyses were performed on five breeds representing horses of different types, origins and utilities according to performance (in total 877 horses): primitive (Polish koniks; Hucul horses), draught (Polish heavy draught) and light (Thoroughbred and Arabian horses). Two polymorphisms within the ACTN3 gene locus were genotyped and genotype and allele frequency were compared across populations in order to verify if the identified differences contribute to the phenotypic variation observed in horse breeds. The present study allowed confirmation of the significant differences in genotype distribution of g.1104G > A localized in the promoter region between native breeds and racehorse breeds such as Thoroughbreds and Arabians. The allele/genotype variations between primitive and light breeds confirmed that the analysed variant was under selection pressure and can be correlated with racing ability. Moreover, the significant differences for the c.2334C > T genotype frequency between Arabian horses and other breeds indicate its relationship with endurance and athletic performance. The predominance of the T allele (85%) in Arabians suggests that the T variant was favoured during selection focused on improving stamina and could be one of the genetic factors determining endurance ability. Further research is needed to confirm the association of both polymorphisms with exact racing and/or riding results.
- Published
- 2019
- Full Text
- View/download PDF
48. The Pituitary Transcriptional Response Related to Feed Conversion in Pigs.
- Author
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Piórkowska K, Żukowski K, Tyra M, Szyndler-Nędza M, Szulc K, Skrzypczak E, and Ropka-Molik K
- Subjects
- Animals, Female, Prolactin genetics, Prolactin metabolism, Receptors, Notch genetics, Receptors, Notch metabolism, Swine physiology, Wnt Signaling Pathway, Animal Nutritional Physiological Phenomena, Pituitary Gland metabolism, Swine genetics, Transcriptome
- Abstract
Over the decades, pig breeding objectives have focused on improving the meat content in the carcass without taking into consideration the more effective fattening indicators that affect feed conversion. At present, pig growth traits associated particularly with animal feeding have become crucial due to their economic significance. This is especially evident in countries where pigs are maintained on large farms. The present study indicates that pituitary differentially expressed genes (DEGs) are activated in response to variable feed conversion (FC) in pigs. The experiment included two native Polish breeds: Puławska and Złotnicka White (ZW). The whole pituitary transcriptome was sequenced using next-generation sequencing (NGS) technology. The RNA-seq method identified over 500 and 300 DEGs in the pituitaries of the ZW and the Puławska pig populations, respectively, that were associated with hormonal regulation, notch signaling, and Wnt pathways. Lower FC in the ZW pigs favoured increased fat content in the body and significantly higher prolactin expression. The obtained results indicate that low FC values in pigs are related to slower growth or increased fat content, which suggests various pituitary responses. Therefore, the identified candidate genes were not directly associated with feed conversion values but with other factors. However, the present study delivers new insights into pituitary regulation in pigs.
- Published
- 2019
- Full Text
- View/download PDF
49. The use of the SLC16A1 gene as a potential marker to predict race performance in Arabian horses.
- Author
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Ropka-Molik K, Stefaniuk-Szmukier M, Szmatoła T, Piórkowska K, and Bugno-Poniewierska M
- Subjects
- Alleles, Animals, Gene Frequency, Genotype, Polymorphism, Single Nucleotide, Biomarkers, Horses genetics, Monocarboxylic Acid Transporters genetics, Physical Functional Performance, Symporters genetics
- Abstract
Background: Arabian horses are commonly believed to be one of the oldest and the most popular horse breeds in the world, characterized by favourable stamina traits and exercise phenotypes. During intensive training, the rates of lactate production and utilization are critical to avoid muscle fatigue and a decrease in exercise performance. The key factor determining transmembrane lactate transport is the monocarboxylate transporter 1 protein coded for by the SLC16A1 gene. The aim of the present research was to identify polymorphisms in the coding sequence and UTRs in the equine SLC16A1 gene and to evaluate their potential association with race performance traits in Arabian horses. Based on RNA-seq data, SNPs were identified and genotyped using PCR-RFLP or PCR-HRM methods in 254 Arabian horses that competed in flat races. An association analysis between polymorphisms and racing results was performed., Results: Novel polymorphisms in the equine SLC16A1 locus have been identified (missense and 5'UTR variants: g.55601543C > T and g.55589063 T > G). Analysis showed a significant association between the 5'UTR polymorphism and several racing results as follows: the possibility of winning first or second place, the number of races in which horses started and total financial benefits. The analysis also showed differences in genotype distribution depending on race distance. In the studied population, the shorter distance races were only won by TT horses. The GG and TG horses took first and second places in middle- and long-distance races, and the percentage of winning heterozygotes increased from 19.5 to 27% at the middle and long distances, respectively. The p.Val432Ile (g.55601543C > T) polymorphism was not significantly related to the analysed racing results., Conclusion: Our results showed that g.55589063 T > G polymorphism affected the possibility of winning first or second place and of competing in more races. The different distribution of genotypes depending on race distance indicated the possibility of using a SNP in the SLC16A1 gene as a marker to predict the best race distance for a horse. The presented results provide a basis for further research to validate the use of the SLC16A1 gene as a potential marker associated with racing performance.
- Published
- 2019
- Full Text
- View/download PDF
50. Association of Ghrelin Gene Polymorphisms with Fattening Traits and Feed Intake in Pig: A Preliminary Study.
- Author
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Tyra M, Ropka-Molik K, Piórkowska K, Oczkowicz M, Szyndler-Nędza M, and Małopolska M
- Abstract
Numerous studies have been conducted to explain the biological functions and mechanism of ghrelin (GHRL) action in animals. However, the exact role of ghrelin in the regulation of growth and development in pigs is still unclear. The ghrelin gene is considered to be a good candidate marker for the identification of economically important traits in pig production such as feed intake, growth or carcass quality. The objectives of the present study were to investigate the regulatory regions and coding sequence of the porcine GHRL gene and determine the effect of polymorphisms at the ghrelin gene locus on selected fattening traits. Data were obtained from 346 gilts (pure breeds: Landrace, 188; Duroc, 74; Pietrain, 84). The PCR-RFLP (Polymerase Chain Reaction-Restriction Fragment Length Polymorphism) method was used to detect polymorphisms within GHRL. Three polymorphisms were found, one in the promoter region (c.-93A>G) and two in the 3'UTR sequence (g.4428T>C; g.4486C>T). A significant ( p ≤ 0.01) additive effect on daily gain (negative) and age at slaughter (positive) was obtained at the locus c.-93A>G. However, the most promising mutation was at the locus g.4486C > T, which is associated with total feed intake. Overall, the described GHRL polymorphisms may be useful as molecular markers in pig selection but future studies are required.
- Published
- 2019
- Full Text
- View/download PDF
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