31 results on '"Shiraishi, Tsukasa"'
Search Results
2. Possible clinical outcomes using early enteral nutrition in individuals with allogeneic hematopoietic stem cell transplantation: A single-center retrospective study
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Iyama, Satoshi, Tatsumi, Hiroomi, Shiraishi, Tsukasa, Yoshida, Masahiro, Tatekoshi, Ayumi, Endo, Akihito, Ishige, Taichiro, Shiwa, Yuh, Ibata, Soushi, Goto, Akari, Nagashima, Kana, Horiguchi, Hiroto, Fujita, Chisa, Ikeda, Hiroshi, Takada, Kohichi, Nobuoka, Takayuki, Kamihara, Yusuke, Kikuchi, Shohei, Sato, Tsutomu, Ohnishi, Hirofumi, Yokota, Shin-ichi, and Kobune, Masayoshi
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- 2021
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3. Novel antimicrobial activities of a peptide derived from a Japanese soybean fermented food, Natto, against Streptococcus pneumoniae and Bacillus subtilis group strains
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Kitagawa, Manabu, Shiraishi, Tsukasa, Yamamoto, Soh, Kutomi, Ryosuke, Ohkoshi, Yasuo, Sato, Toyotaka, Wakui, Hideki, Itoh, Hideaki, Miyamoto, Atsushi, and Yokota, Shin-ichi
- Published
- 2017
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4. Evaluation of consistency in quantification of gene copy number by real‐time reverse transcription quantitative polymerase chain reaction and virus titer by plaque‐forming assay for human respiratory syncytial virus
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Yamamoto, Keisuke, Ogasawara, Noriko, Yamamoto, Soh, Takano, Kenichi, Shiraishi, Tsukasa, Sato, Toyotaka, Tsutsumi, Hiroyuki, Himi, Tetsuo, and Yokota, Shin‐ichi
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- 2018
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5. Pathogenic lineage of mcr-negative colistin-resistant Escherichia coli, Japan, 2008-2015
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Sato, Toyotaka, Fukuda, Akira, Suzuki, Yuuki, Shiraishi, Tsukasa, Honda, Hiroyuki, Shinagawa, Masaaki, Yamamoto, Soh, Ogasawara, Noriko, Usui, Masaru, Takahashi, Hiroki, Takahashi, Satoshi, Tamura, Yutaka, and Yokota, Shin- ichi
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Health - Abstract
To the Editor: Colistin is a last-line drug for treatment of multidrug-resistant, gram-negative bacterial infections, including those caused by Escherichia coli. We report colistin-resistant E. coli isolates from Japan, including [...]
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- 2016
6. Intrafamilial, Preferentially Mother-to-Child and Intraspousal, Helicobacter pylori Infection in Japan Determined by Mutilocus Sequence Typing and Random Amplified Polymorphic DNA Fingerprinting
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Yokota, Shin-ichi, Konno, Mutsuko, Fujiwara, Shin-ichi, Toita, Nariaki, Takahashi, Michiko, Yamamoto, Soh, Ogasawara, Noriko, and Shiraishi, Tsukasa
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- 2015
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7. Contribution of Novel Amino Acid Alterations in PmrA or PmrB to Colistin Resistance in mcr-Negative Escherichia coli Clinical Isolates, Including Major Multidrug-Resistant Lineages O25b : H4-ST131-H30Rx and Non-x
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Sato, Toyotaka, Shiraishi, Tsukasa, Hiyama, Yoshiki, Honda, Hiroyuki, Shinagawa, Masaaki, Usui, Masaru, Kuronuma, Koji, Masumori, Naoya, Takahashi, Satoshi, Tamura, Yutaka, and Yokota, Shin-ichi
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- 2018
8. Whole genome analysis of a multidrug-resistant Streptococcus pneumoniae isolate from a patient with invasive pneumococcal infection developing disseminated intravascular coagulation
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Ohkoshi, Yasuo, Sato, Toyotaka, Wada, Takayuki, Fukushima, Yukari, Murabayashi, Hiromi, Takakuwa, Yasunari, Nishiyama, Kaoru, Honda, Hiroyuki, Shiraishi, Tsukasa, Kuronuma, Koji, Takahashi, Hiroki, Nakajima, Chie, Suzuki, Yasuhiko, and Yokota, Shin-ichi
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- 2018
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9. Adaptive Cross-Resistance to Aminoglycoside Antibiotics in Pseudomonas aeruginosa Induced by Topical Dosage of Neomycin.
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Uemura, Shuji, Yokota, Shin-ichi, Shiraishi, Tsukasa, Kitagawa, Manabu, Hirayama, Suguru, Kyan, Ryoko, Mizuno, Hirotoshi, Sawamoto, Keigo, Inoue, Hiroyuki, Miyamoto, atsushi, and Narimatsu, Eichi
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AMINOGLYCOSIDES ,TREATMENT for burns & scalds ,PSEUDOMONAS aeruginosa ,NEOMYCIN ,BURNS & scalds prevention ,DRUG dosage ,MICROBIAL sensitivity tests ,THERAPEUTICS - Abstract
Background: Topical antimicrobial formulations containing neomycin are commonly used to prevent and treat burn infections. However, Pseudomonas aeruginosa shows rapid acquisition of adaptive resistance to neomycin. This study aimed to evaluate the survival of P. aeruginosa during exposure to neomycin at high concentrations comparable to those used in topical formulations, and to investigate the effect of adaptive resistance to neomycin on the susceptibility to other aminoglycosides. Methods: Strain IID1130 [neomycin minimal inhibitory concentration (MIC) = 4 μg/ml] was incubated on an agar medium containing neomycin at high concentrations (8-4,096 μg/ml), and growing colonies were macroscopically observed. Acquisition of adaptive resistance was examined for 5 P. aeruginosa strains. Cells were sequentially passaged on agar medium containing neomycin with step-wise increased concentrations (8-2,048 μg/ml). To assess reversion of antibiotic susceptibility, the resulting colonies were repeatedly subcultured on antibiotic-free agar plates. Results: Growing IID1130 colonies were macroscopically detected on a neomycin-containing (2,048 μg/ml) agar plate for 48 h. These cells showed increasing MIC for not only neomycin, but also gentamicin and amikacin; the MIC values were occasionally higher than the breakpoints. When the adapted cells were subcultured on antibiotic-free agar, several passages were required for reversion of susceptibility. Conclusions: Our findings suggest that P. aeruginosa can survive in the presence of neomycin with a concentration typically used in topical dosage forms, and that the acquired adaptive resistance is persistent and is accompanied by cross-resistance to other aminoglycosides. [ABSTRACT FROM AUTHOR]
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- 2017
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10. Mechanism of Reduced Susceptibility to Fosfomycin in Escherichia coli Clinical Isolates.
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Ohkoshi, Yasuo, Sato, Toyotaka, Suzuki, Yuuki, Yamamoto, Soh, Shiraishi, Tsukasa, Ogasawara, Noriko, and Yokota, Shin-ichi
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DNA analysis ,AMINO acids ,ANTIBIOTICS ,CARBOHYDRATES ,CARRIER proteins ,DRUG resistance in microorganisms ,ESCHERICHIA coli ,ESCHERICHIA coli diseases ,GENETICS ,GLUCOSE ,MICROBIAL sensitivity tests ,GENETIC mutation ,POLYMERASE chain reaction ,PROBABILITY theory ,RESEARCH funding ,REVERSE transcriptase polymerase chain reaction ,DESCRIPTIVE statistics ,MANN Whitney U Test - Abstract
In recent years, multidrug resistance of Escherichia coli has become a serious problem. However, resistance to fosfomycin (FOM) has been low. We screened E. coli clinical isolates with reduced susceptibility to FOM and characterized molecular mechanisms of resistance and reduced susceptibility of these strains. Ten strains showing reduced FOM susceptibility (MIC ≥ 8 μg/mL) in 211 clinical isolates were found and examined. Acquisition of genes encoding FOM-modifying enzyme genes (fos genes) and mutations in murA that underlie high resistance to FOM were not observed. We examined ability of FOM incorporation via glucose-6-phosphate (G6P) transporter and sn-glycerol-3-phosphate transporter. In ten strains, nine showed lack of growth on M9 minimum salt agar supplemented with G6P. Eight of the ten strains showed fluctuated induction by G6P of uhpT that encodes G6P transporter expression. Nucleotide sequences of the uhpT, uhpA, glpT, ptsI, and cyaA shared several deletions and amino acid mutations in the nine strains with lack of growth on G6P-supplemented M9 agar. In conclusion, reduction of uhpT function is largely responsible for the reduced sensitivity to FOM in clinical isolates that have not acquired FOM-modifying genes or mutations in murA. However, there are a few strains whose mechanisms of reduced susceptibility to FOM are still unclear. [ABSTRACT FROM AUTHOR]
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- 2017
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11. Mumps Virus Induces Protein-Kinase-R-Dependent Stress Granules, Partly Suppressing Type III Interferon Production.
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Hashimoto, Shin, Yamamoto, Soh, Ogasawara, Noriko, Sato, Toyotaka, Yamamoto, Keisuke, Katoh, Hiroshi, Kubota, Toru, Shiraishi, Tsukasa, Kojima, Takashi, Himi, Tetsuo, Tsutsumi, Hiroyuki, and Yokota, Shin-ichi
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MUMPS ,PROTEIN kinases ,STRESS granules ,VIRUS diseases ,ANTIVIRAL agents ,GTPASE-activating protein - Abstract
Stress granules (SGs) are cytoplasmic granular aggregations that are induced by cellular stress, including viral infection. SGs have opposing antiviral and proviral roles, which depend on virus species. The exact function of SGs during viral infection is not fully understood. Here, we showed that mumps virus (MuV) induced SGs depending on activation of protein kinase R (PKR). MuV infection strongly induced interferon (IFN)-λ1, 2 and 3, and IFN-β through activation of IFN regulatory factor 3 (IRF3) via retinoic acid inducible gene-I (RIG-I) and the mitochondrial antiviral signaling (MAVS) pathway. MuV-induced IFNs were strongly upregulated in PKR-knockdown cells. MuV-induced SG formation was suppressed by knockdown of PKR and SG marker proteins, Ras-GTPase-activating protein SH3-domain-binding protein 1 and T-cell-restricted intracellular antigen-1, and significantly increased the levels of MuV-induced IFN-λ1. However, viral titer was not altered by suppression of SG formation. PKR was required for induction of SGs by MuV infection and regulated type III IFN (IFN-λ1) mRNA stability. MuV-induced SGs partly suppressed type III IFN production by MuV; however, the limited suppression was not sufficient to inhibit MuV replication in cell culture. Our results provide insight into the relationship between SGs and IFN production induced by MuV infection. [ABSTRACT FROM AUTHOR]
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- 2016
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12. Pathogenic Lineage of mcr-Negative Colistin-Resistant Escherichia coli, Japan, 2008-2015.
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Toyotaka Sato, Akira Fukuda, Yuuki Suzuki, Tsukasa Shiraishi, Hiroyuki Honda, Masaaki Shinagawa, Soh Yamamoto, Noriko Ogasawara, Masaru Usui, Hiroki Takahashi, Satoshi Takahashi, Yutaka Tamura, Shin-ichi Yokota, Sato, Toyotaka, Fukuda, Akira, Suzuki, Yuuki, Shiraishi, Tsukasa, Honda, Hiroyuki, Shinagawa, Masaaki, and Yamamoto, Soh
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DRUG resistance in bacteria ,ESCHERICHIA coli ,COLISTIN ,PATHOGENIC bacteria ,CEPHALOSPORINS ,FLUOROQUINOLONES ,THERAPEUTICS ,ANTIBIOTICS ,COMPARATIVE studies ,DRUG resistance in microorganisms ,ESCHERICHIA coli diseases ,HISTORY ,RESEARCH methodology ,MEDICAL cooperation ,PROTEINS ,RESEARCH ,EVALUATION research ,PHARMACODYNAMICS - Abstract
The article discusses a reports about the colistin-resistant Escherichia coli isolates from Japan, including a global-spreading pathogenic lineage. E. coli isolates obtained from clinical specimens taken at Sapporo Clinical Laboratory Inc. and Sapporo Medical University Hospital in Japan were tested and four E. coli isolates exceeded the colistin resistance breakpoint. The colistin-resistant isolates reported were resistant to fluoroquinolones, and one (SME296) was resistant to cephalosporins.
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- 2016
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13. Oligosaccharide Metabolism and Lipoteichoic Acid Production in Lactobacillus gasseri and Lactobacillus paragasseri.
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Shiraishi, Tsukasa, Maeno, Shintaro, Kishi, Sayoko, Fujii, Tadashi, Tanno, Hiroki, Hirano, Katsuaki, Tochio, Takumi, Tanizawa, Yasuhiro, Arita, Masanori, Yokota, Shin-ichi, and Endo, Akihito
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LIPOTEICHOIC acid ,OPERONS ,LACTOBACILLUS ,MOLECULAR size ,OLIGOSACCHARIDES ,RAFFINOSE ,CELL culture - Abstract
Lactobacillus gasseri and Lactobacillus paragasseri are human commensal lactobacilli that are candidates for probiotic application. Knowledge of their oligosaccharide metabolic properties is valuable for synbiotic application. The present study characterized oligosaccharide metabolic systems and their impact on lipoteichoic acid (LTA) production in the two organisms, i.e., L. gasseri JCM 1131
T and L. paragasseri JCM 11657. The two strains grew well in medium with glucose but poorly in medium with raffinose, and growth rates in medium with kestose differed between the strains. Oligosaccharide metabolism markedly influenced their LTA production, and apparent molecular size of LTA in electrophoresis recovered from cells cultured with glucose and kestose differed from that from cells cultured with raffinose in the strains. On the other hand, more than 15-fold more LTA was observed in the L. gasseri cells cultured with raffinose when compared with glucose or kestose after incubation for 15 h. Transcriptome analysis identified glycoside hydrolase family 32 enzyme as a potential kestose hydrolysis enzyme in the two strains. Transcriptomic levels of multiple genes in the dlt operon, involved in D-alanine substitution of LTA, were lower in cells cultured with raffinose than in those cultured with kestose or glucose. This suggested that the different sizes of LTA observed among the carbohydrates tested were partly due to different levels of alanylation of LTA. The present study indicates that available oligosaccharide has the impact on the LTA production of the industrially important lactobacilli, which might influence their probiotic properties. [ABSTRACT FROM AUTHOR]- Published
- 2021
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14. Structural analysis of the lipoteichoic acid anchor glycolipid: Comparison of methods for degradation of the glycerophosphate backbone polymer.
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Shiraishi, Tsukasa, Yamamoto, Soh, and Yokota, Shin-ichi
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LIPOTEICHOIC acid , *ACID analysis , *POLYMERS , *GLYCOLIPIDS , *ACETIC acid , *HYDROFLUORIC acid - Abstract
Acetic acid treatment [98% (v/v), 100 °C, 3 h] was proposed as a new method for degrading the glycerophosphate polymer moiety of Gram-positive bacterial lipoteichoic acid. We demonstrated that this method resulted in partial O -acetylation on the carbohydrate residues of the anchor glycolipid. Hence, the acetic acid treatment is not suitable for the chemical structural analysis of lipoteichoic acid. Unlabelled Image • Structural determination of LTA anchor glycolipid requires removal of glycerophosphate polymer. • Treatment with acetic acid occurs O -acetylation on hydroxyl groups of carbohydrate residues. • Hydrofluoric acid treatment is suitable for degradation of glycerophosphate polymer of LTA. [ABSTRACT FROM AUTHOR]
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- 2019
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15. Tigecycline Susceptibility of Klebsiella pneumoniae Complex and Escherichia coli Isolates from Companion Animals: The Prevalence of Tigecycline-Nonsusceptible K. pneumoniae Complex, Including Internationally Expanding Human Pathogenic Lineages.
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Sato, Toyotaka, Harada, Kazuki, Usui, Masaru, Tsuyuki, Yuzo, Shiraishi, Tsukasa, Tamura, Yutaka, and Yokota, Shin-ichi
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KLEBSIELLA pneumoniae , *ESCHERICHIA coli , *MICROBIAL sensitivity tests , *ENTEROBACTERIACEAE , *PETS , *ANIMAL diseases - Abstract
Transmission of tigecycline-nonsusceptible pathogenic Enterobacteriaceae from companion animals to human should be a concern because tigecycline is a last-line drug for treating multidrug-resistant Enterobacteriaceae in human medicine. However, tigecycline susceptibility of Enterobacteriaceae isolated from companion animals has not been investigated. In this study, we investigated the tigecycline susceptibility of Klebsiella pneumoniae complex and Escherichia coli isolates from dogs and cats, and evaluated their human pathogenicity potential. Tigecycline susceptibility of K. pneumoniae , including Klebsiella quasipneumoniae ( n = 86) and E. coli ( n = 100) strains isolated from dogs and cats was investigated. The antimicrobial susceptibility, capsular serotype, multilocus sequence type, ompK36 group, presence of virulence genes, and serum resistance of tigecycline-nonsusceptible isolates were evaluated. All E. coli isolates were susceptible to tigecycline. Two K. pneumoniae (minimum inhibitory concentration [MIC], 4 mg/L) and one K. quasipneumoniae (MIC, 8 mg/L) isolates were tigecycline resistant. Sixteen K. pneumoniae and one K. quasipneumoniae isolates were tigecycline intermediate (2 mg/L). All tigecycline-nonsusceptible isolates ( n = 20) were also ciprofloxacin nonsusceptible. These isolates harbored five to nine virulence genes; 16 isolates were resistant to the human serum. In addition, STs of 13 K. pneumoniae isolates were reported to be found in strains isolated from human; isolates considered high-risk clones in human (ST11, ST15, and ST147) were also identified. In conclusion, the isolation of tigecycline-nonsusceptible K. pneumoniae from companion animals is an impact from the viewpoint of One Health approach to antimicrobial resistance that companion animals are a reservoir of human pathogenic lineages. [ABSTRACT FROM AUTHOR]
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- 2018
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16. Release of large amounts of lipopolysaccharides from Pseudomonas aeruginosa cells reduces their susceptibility to colistin.
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Yokota, Shin-ichi, Hakamada, Hiroshi, Yamamoto, Soh, Sato, Toyotaka, Shiraishi, Tsukasa, Shinagawa, Masaaki, and Takahashi, Satoshi
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LIPOPOLYSACCHARIDES , *PSEUDOMONAS aeruginosa , *COLISTIN , *METHICILLIN-resistant staphylococcus aureus treatment , *ANTI-infective agents , *THERAPEUTICS - Abstract
Pseudomonas aeruginosa is an important etiological agent of opportunistic infections. Injectable colistin is available as a last-line treatment option for multidrug-resistant P. aeruginosa infections. When cells were inoculated at a high number, colistin-susceptible P. aeruginosa grew on agar medium containing colistin at a concentration 10-fold higher than the minimum inhibitory concentration without acquiring colistin resistance. This study examined the responsible mechanism for growth in the presence of a high concentration of colistin. Cell wash fluid derived from P. aeruginosa efficiently reduced colistin antimicrobial activity. This reduction was mediated by lipopolysaccharide (LPS) in the wash fluid. Extracellular LPS inhibited colistin activity more effectively than cell-bound LPS in fixed cells. Cell wash fluids from Escherichia coli and Acinetobacter baumannii also reduced colistin activity; however, they were less potent than those from P. aeruginosa . The amount of LPS in cell wash fluid from P. aeruginosa was approximately 10-fold higher than that in fluid from E. coli or A. baumannii . In conclusion, cell-free LPS derived from bacterial cells inhibited the antimicrobial activity of colistin, and this effect was greatest for P. aeruginosa . Thus, large amounts of broken and dead cells of P. aeruginosa at infection foci will reduce the effectiveness of colistin, even against cells that have not yet acquired resistance. [ABSTRACT FROM AUTHOR]
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- 2018
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17. NIP-SNAP-1 and -2 mitochondrial proteins are maintained by heat shock protein 60.
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Yamamoto, Soh, Okamoto, Tomoya, Ogasawara, Noriko, Hashimoto, Shin, Shiraishi, Tsukasa, Sato, Toyotaka, Yamamoto, Keisuke, Tsutsumi, Hiroyuki, Takano, Kenichi, Himi, Testuo, Itoh, Hideaki, and Yokota, Shin-ichi
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MITOCHONDRIAL proteins , *HEAT shock proteins , *PROTEIN-protein interactions , *NEURAL transmission , *AUTOPHAGY - Abstract
NIP-SNAP-1 and -2 are ubiquitous proteins thought to be associated with maintenance of mitochondrial function, neuronal transmission, and autophagy. However, their physiological functions remain largely unknown. To elucidate their functional importance, we screened for proteins that interact with NIP-SNAP-1 and -2, resulting in identification of HSP60 and P62/SQSTM1 as binding proteins. NIP-SNAP-1 and -2 localized in the mitochondrial inner membrane space, whereas HSP60 localized in the matrix. Native gel electrophoresis and filter trap assays revealed that human HSP60 prevented aggregation of newly synthesized NIP-SNAP-2 in an in vitro translation system. Moreover, expression levels of NIP-SNAP-1 and -2 in cells were decreased by knockdown of HSP60, but not HSP10. These findings indicate that HSP60 promotes folding and maintains the stability of NIP-SNAP-1 and -2. [ABSTRACT FROM AUTHOR]
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- 2017
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18. Mitochondrial proteins NIP-SNAP-1 and -2 are a target for the immunomodulatory activity of clarithromycin, which involves NF-κB-mediated cytokine production.
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Yamamoto, Soh, Ogasawara, Noriko, Yamamoto, Keisuke, Uemura, Chika, Takaya, Yoshiaki, Shiraishi, Tsukasa, Sato, Toyotaka, Hashimoto, Shin, Tsutsumi, Hiroyuki, Takano, Kenichi, Himi, Tetsuo, and Yokota, Shin-ichi
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MITOCHONDRIAL proteins , *IMMUNOTHERAPY , *CLARITHROMYCIN , *CYTOKINES , *NF-kappa B - Abstract
Macrolide antibiotics have immunomodulatory activities, including suppression of cytokine production, cell adhesion molecule expression, and mucin production. These immunomodulatory activities improve the symptoms of respiratory diseases associated with chronic inflammation. However, the underlying molecular mechanism(s) is not well understood yet. To address this, we prepared clarithromycin (CAM)-conjugated Sepharose and examined bound cellular proteins by proteome analysis. We identified mitochondrial proteins 4-nitrophenylphosphatase domain and non-neuronal synaptosomal associated protein 25-like protein homolog (NIP-SNAP)-1 and -2 and very long-chain acyl-CoA dehydrogenase (VLCAD) as CAM-binding proteins. Production of proinflammatory cytokines (IL-8 and IL-6) induced by lipopolysaccharides (LPSs) and Pam 3 -CSK 4 in human epithelial cell lines BEAS-2B and T24 were suppressed by knockdown of NIP-SNAP-1 or -2, and partly by knockdown of VLCAD. Also, knockdown of NIP-SNAP-1 or -2 in various cell lines suppressed LPS-induced expression of IL-8 and IL-6 mRNA and NF-κB activity. Thus, CAM suppresses NF-κB-mediated proinflammatory cytokine production by interacting with mitochondrial proteins, NIP-SNAP-1 and -2. [ABSTRACT FROM AUTHOR]
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- 2017
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19. Clarithromycin prevents human respiratory syncytial virus-induced airway epithelial responses by modulating activation of interferon regulatory factor-3.
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Yamamoto, Keisuke, Yamamoto, Soh, Ogasawara, Noriko, Takano, Kenichi, Shiraishi, Tsukasa, Sato, Toyotaka, Miyata, Ryo, Kakuki, Takuya, Kamekura, Ryuta, Kojima, Takashi, Tsutsumi, Hiroyuki, Himi, Tetsuo, and Yokota, Shin-ichi
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CLARITHROMYCIN , *RESPIRATORY syncytial virus infections , *INTERFERON regulatory factors , *IMMUNOMODULATORS , *MACROLIDE antibiotics , *TOLL-like receptors , *PREVENTION , *THERAPEUTICS - Abstract
Macrolide antibiotics exert immunomodulatory activity by reducing pro-inflammatory cytokine production by airway epithelial cells, fibroblasts, vascular endothelial cells, and immune cells. However, the underlying mechanism of action remains unclear. Here, we examined the effect of clarithromycin (CAM) on pro-inflammatory cytokine production, including interferons (IFNs), by primary human nasal epithelial cells and lung epithelial cell lines (A549 and BEAS-2B cells) after stimulation by Toll-like receptor (TLR) and RIG-I-like receptor (RLR) agonists and after infection by human respiratory syncytial virus (RSV). CAM treatment led to a significant reduction in poly I:C- and RSV-mediated IL-8, CCL5, IFN-β and -λ production. Furthermore, IFN-β promoter activity (activated by poly I:C and RSV infection) was significantly reduced after treatment with CAM. CAM also inhibited IRF-3 dimerization and subsequent translocation to the nucleus. We conclude that CAM acts a crucial modulator of the innate immune response, particularly IFN production, by modulating IRF-3 dimerization and subsequent translocation to the nucleus of airway epithelial cells. This newly identified immunomodulatory action of CAM will facilitate the discovery of new macrolides with an anti-inflammatory role. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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20. PmrAB, the two-component system of Acinetobacter baumannii , controls the phosphoethanolamine modification of lipooligosaccharide in response to metal ions.
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Yamada N, Kamoshida G, Shiraishi T, Yamaguchi D, Matsuoka M, Yamauchi R, Kanda N, Kamioka R, Takemoto N, Morita Y, Fujimuro M, Yokota S-i, and Yahiro K
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- Anti-Bacterial Agents pharmacology, Metals metabolism, Metals pharmacology, Transcription Factors, Acinetobacter baumannii genetics, Acinetobacter baumannii drug effects, Acinetobacter baumannii metabolism, Lipopolysaccharides metabolism, Bacterial Proteins genetics, Bacterial Proteins metabolism, Ethanolamines pharmacology, Ethanolamines metabolism, Gene Expression Regulation, Bacterial
- Abstract
Acinetobacter baumannii is highly resistant to antimicrobial agents, and XDR strains have become widespread. A. baumannii has developed resistance to colistin, which is considered the last resort against XDR Gram-negative bacteria, mainly caused by lipooligosaccharide (LOS) phosphoethanolamine (pEtN) and/or galactosamine (GalN) modifications induced by mutations that activate the two-component system (TCS) pmrAB . Although PmrAB of A. baumannii has been recognized as a drug resistance factor, its function as TCS, including its regulatory genes and response factors, has not been fully elucidated. In this study, to clarify the function of PmrAB as TCS, we elucidated the regulatory genes (regulon) of PmrAB via transcriptome analysis using pmrAB -activated mutant strains. We discovered that PmrAB responds to low pH, Fe
2+ , Zn2+ , and Al3+ . A. baumannii selectively recognizes Fe2+ rather than Fe3+ , and a novel region ExxxE, in addition to the ExxE motif sequence, is involved in the environmental response. Furthermore, PmrAB participates in the phosphoethanolamine modification of LOS on the bacterial surface in response to metal ions such as Al3+ , contributing to the attenuation of Al3+ toxicity and development of resistance to colistin and polymyxin B in A. baumannii . This study demonstrates that PmrAB in A. baumannii not only regulates genes that play an important role in drug resistance but is also involved in responses to environmental stimuli such as metal ions and pH, and this stimulation induces LOS modification. This study reveals the importance of PmrAB in the environmental adaptation and antibacterial resistance emergence mechanisms of A. baumannii ., Importance: Antimicrobial resistance (AMR) is a pressing global issue in human health. Acinetobacter baumannii is notably high on the World Health Organization's list of bacteria for which new antimicrobial agents are urgently needed. Colistin is one of the last-resort drugs used against extensively drug-resistant (XDR) Gram-negative bacteria. However, A. baumannii has become increasingly resistant to colistin, primarily by modifying its lipooligosaccharide (LOS) via activating mutations in the two-component system (TCS) PmrAB. This study comprehensively elucidates the detailed mechanism of drug resistance of PmrAB in A. baumannii as well as its biological functions. Understanding the molecular biology of these molecules, which serve as drug resistance factors and are involved in environmental recognition mechanisms in bacteria, is crucial for developing fundamental solutions to the AMR problem., Competing Interests: The authors declare no conflict of interest.- Published
- 2024
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21. Preparation and Structural Analysis of Lipoteichoic Acid on Cell Membranes Derived from Lactic Acid Bacteria.
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Shiraishi T and Yokota SI
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- Hydrophobic and Hydrophilic Interactions, Teichoic Acids chemistry, Lipopolysaccharides chemistry, Lactobacillales metabolism, Cell Membrane metabolism, Cell Membrane chemistry
- Abstract
Gram-positive bacteria, including lactic acid bacteria (LAB), possess lipoteichoic acid (LTA) on the cell surface. LTA is an amphiphilic molecule typically composed of hydrophilic glycerolphosphate polymer and hydrophobic anchor glycolipid moieties. It is involved in physiological properties of the cell surface and also plays roles in interactions with the host. Appropriate preparation procedures, such as extraction and purification, are required to clarify the structure-activity relationship. Structural diversity of LTA has been reported at the bacterial species and strain levels, and structural differences might affect interactions with the host. This chapter introduces techniques for preparation and structural analysis of LTA derived from LAB. It consists of four sections, covering butanol extraction, hydrophobic interaction chromatography, immunoblotting, and structural analysis. Technical notes containing supplemental information about the individual steps are also provided., (© 2024. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2024
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22. Role of Lipoteichoic Acid from the Genus Apilactobacillus in Inducing a Strong IgA Response.
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Matsuzaki C, Shiraishi T, Chiou TY, Nakashima Y, Higashimura Y, Yokota SI, Yamamoto K, and Takahashi T
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- Alanine, Animals, Immunoglobulin A, Lactic Acid, Lipopolysaccharides, Mice, Teichoic Acids, Glycerol, Lactobacillales
- Abstract
Lactic acid bacterium-containing fermentates provide beneficial health effects by regulating the immune response. A naturally fermented vegetable beverage, a traditional Japanese food, reportedly provides health benefits; however, the beneficial function of its bacteria has not been clarified. Apilactobacillus kosoi is the predominant lactic acid bacterium in the beverage. Using murine Peyer's patch cells, we compared the immunoglobulin A (IgA)-inducing activity of A. kosoi 10H
T to those of 29 other species of lactic acid bacteria and found that species belonging to the genus Apilactobacillus ( A. kosoi 10HT , A. apinorum JCM30765T , and A. kunkeei JCM16173T ) possessed significantly higher activity than the others. Thereafter, lipoteichoic acids (LTAs), important immunostimulatory molecules of Gram-positive bacteria, were purified from the three Apilactobacillus species, and their IgA-inducing activity was compared to those of LTAs from Lactiplantibacillus plantarum JCM1149T and a probiotic strain, Lacticaseibacillus rhamnosus GG. The results revealed that LTAs from Apilactobacillus species had significantly higher activity than others. We also compared the LTA structure of A. kosoi 10HT with that of L. plantarum JCM1149T and L. rhamnosus GG. Although d-alanine or both d-alanine and carbohydrate residues were substituents of free hydroxyl groups in the polyglycerol phosphate structure in LTAs from strains JCM1149T and GG, d-alanine residues were not found in LTA from strain 10HT by1 H nuclear magnetic resonance (NMR) analysis. Matrix-assisted laser desorption ionization-time-of-flight mass spectrometry (MALDI-TOF MS) analysis of the glycolipid structure of LTA revealed that LTA from strain 10HT contained dihexosyl glycerol, whereas trihexosyl glycerol was detected in LTAs from other strains. These structural differences may be related to differences in IgA-inducing activity. IMPORTANCE The components of lactic acid bacteria that exert immunostimulatory effects are of increasing interest for therapeutic and prophylactic options, such as alternatives to antibiotics, cognitive enhancements, and vaccine adjuvants. LTAs act as immunostimulatory molecules in the host innate immune system by interacting with pattern recognition receptors. However, as LTA structures differ among species, detailed knowledge of the structure-function relationship for immunostimulatory effects is required. Comparisons of the IgA-inducing activity of LTAs have demonstrated that LTAs from the genus Apilactobacillus possess distinctive activities to stimulate mucosal immunity. The first analysis of the LTA structure from the genus Apilactobacillus suggests that it differs from structures of LTAs of related species of lactic acid bacteria. This knowledge is expected to aid in the development of functional foods containing lactic acid bacteria and pharmaceutical applications of immunostimulatory molecules from lactic acid bacteria.- Published
- 2022
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23. Inhibitory Effect of the Glycerophosphate Moiety of Lipoteichoic Acid from Lactic Acid Bacteria on Dexamethasone-Induced Atrogin-1 Expression in C2C12 Myotubes.
- Author
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Katsuki R, Shiraishi T, Sakata S, Hirota T, Nakamura Y, and Yokota SI
- Subjects
- Animals, Dexamethasone pharmacology, Glycerophosphates, Lipopolysaccharides, Mice, Muscle Fibers, Skeletal, Muscle Proteins, Muscle, Skeletal pathology, SKP Cullin F-Box Protein Ligases, Teichoic Acids, Ubiquitin-Protein Ligases, Lactobacillales, Muscular Atrophy pathology
- Abstract
Atrogin-1, which is an important regulator of ubiquitin-mediated protein degradation in skeletal muscle, is a major marker of muscle loss and disuse muscle atrophy. To investigate which components of lactic acid bacteria (LAB) suppress dexamethasone (DEX)-induced atrogin-1 expression, mouse skeletal muscle C2C12 myotubes were treated with DEX in the presence or absence of components of LAB. Heat-killed cells and lipoteichoic acid (LTA) derived from five LAB strains significantly suppressed DEX-induced atrogin-1 expression. The glycerophosphate (GroP) fraction prepared from chemically-degraded LTA and sn-glycerol-1-phosphate suppressed DEX-induced atrogin-1 expression, whereas the glycolipid anchor fraction of LTA did not. Heat-killed cells obtained by culturing under low-Mn
2+ conditions, which generated fewer poly-GroP polymers in LTA, displayed significantly lower inhibitory activity compared to heat-killed cells grown under normal conditions. These results suggested that LTA of LAB contributed to suppressing atrogin-1 expression and that the GroP moiety of LTA was responsible for its inhibitory activity.- Published
- 2021
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24. Contribution of Novel Amino Acid Alterations in PmrA or PmrB to Colistin Resistance in mcr -Negative Escherichia coli Clinical Isolates, Including Major Multidrug-Resistant Lineages O25b:H4-ST131- H 30Rx and Non-x.
- Author
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Sato T, Shiraishi T, Hiyama Y, Honda H, Shinagawa M, Usui M, Kuronuma K, Masumori N, Takahashi S, Tamura Y, and Yokota SI
- Subjects
- Amino Acid Substitution genetics, Drug Resistance, Multiple, Bacterial genetics, Escherichia coli isolation & purification, Escherichia coli Proteins genetics, Hexosyltransferases biosynthesis, Humans, Lipid A metabolism, Microbial Sensitivity Tests, Sequence Deletion genetics, Anti-Bacterial Agents pharmacology, Bacterial Proteins genetics, Colistin pharmacology, Escherichia coli drug effects, Escherichia coli genetics, Transcription Factors genetics
- Abstract
Colistin is a last-line drug for multidrug-resistant Gram-negative bacteria. We previously reported four plasmid-mediated colistin resistance ( mcr ) gene-negative colistin-resistant Escherichia coli clinical isolates, including the major pathogenic and fluoroquinolone-resistant strains O25b:H4-ST131- H 30Rx (isolates SRE34 and SRE44; MIC for colistin = 16 mg/liter), non-x (SME296; MIC = 8 mg/liter), and O18-ST416 (SME222; MIC = 4 mg/liter). In this study, we investigated the colistin resistance mechanism and identified novel amino acid substitutions or deletions in the PmrAB two-component system that activates eptA (encoding a phosphoethanolamine transferase) and arnT (encoding an undecaprenyl phosphate-alpha-4-amino-4-deoxy-l-arabinose arabinosyl transferase) in all colistin-resistant isolates. SRE34 possessed deletion Δ27-45 (LISVFWLWHESTEQIQLFE) in PmrB, SRE44 possessed substitution L105P in PmrA, and both SME222 and SME296 included substitution G206D in PmrB. Matrix-assisted laser desorption ionization-time of flight mass spectrometry revealed that lipid A is modified with phosphoethanolamine in all four isolates. Deletion of pmrAB decreased colistin MICs to 0.5 mg/liter and lowered eptA and arnT expression. Chromosomal replacement of mutated pmrA or pmrB in colistin-susceptible O25b:H4-ST131 strain SME98 (colistin MIC = 0.5 mg/liter) increased the colistin MIC to that of the respective parent colistin-resistant isolate. In addition, SME98 mutants in which pmrAB was replaced with mutated pmrAB showed no significant differences in bacterial growth and competition culture from the parent strain, except for the mutant with L105P in PmrA, whose growth was significantly suppressed in the presence of the parent strain. In conclusion, some O25b:H4-ST131 strains appear to acquire colistin resistance via phosphoethanolamine modification of lipid A through amino acid changes in PmrAB, and the amino acid changes in PmrB do not influence bacterial growth., (Copyright © 2018 American Society for Microbiology.)
- Published
- 2018
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25. Multiclonal Expansion and High Prevalence of β-Lactamase-Negative Haemophilus influenzae with High-Level Ampicillin Resistance in Japan and Susceptibility to Quinolones.
- Author
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Honda H, Sato T, Shinagawa M, Fukushima Y, Nakajima C, Suzuki Y, Shiraishi T, Kuronuma K, Takahashi S, Takahashi H, and Yokota SI
- Subjects
- Amino Acid Substitution genetics, Haemophilus influenzae isolation & purification, Humans, Japan, Microbial Sensitivity Tests, Ampicillin pharmacology, Ampicillin Resistance genetics, Anti-Bacterial Agents pharmacology, Haemophilus influenzae drug effects, Haemophilus influenzae genetics, Quinolones pharmacology, beta-Lactamases genetics
- Abstract
β-Lactam-resistant Haemophilus influenzae is a clinical concern. A high prevalence (>40%) of β-lactamase-negative high-level ampicillin-resistant H. influenzae (high-BLNAR) isolates in Japan has been reported. However, the reasons for the expansion are unknown. High-BLNAR strains possess an amino acid substitution, either Asn526Lys (group III) or Arg517His (group III-like) in addition to Ser385Thr, in penicillin-binding protein 3 (PBP3). To determine the current prevalence of high-BLNAR strains and the mechanisms behind their expansion in Japan, their prevalence, PBP3 types, multilocus sequence types, and susceptibilities to quinolones approved in Japan as alternatives were determined. Sixty percent of H. influenzae clinical isolates (62/104 isolates) were β-lactamase-negative ampicillin-resistant H. influenzae (BLNAR) strains. Among BLNAR isolates, 92% (57/62 isolates) were high-BLNAR strains. Most isolates were classified as belonging to group III, which contained many genotypes (11 PBP3 types and 25 sequence types). These results indicated that the expansion of high-BLNAR isolates was multiclonal and such strains are still predominant in Japanese clinical settings. One high-BLNAR isolate harbored the novel amino acid substitution Asn526Met in addition to Ser385Thr in PBP3, suggesting a new group (group IV). No quinolone-resistant H. influenzae isolates were identified. The MICs for the quinolones (moxifloxacin, garenoxacin, and tosufloxacin) were similar to that for levofloxacin, whereas sitafloxacin exhibited a lower MIC. However, we obtained 4 H. influenzae isolates with decreased quinolone susceptibility with the amino acid substitution Ser84Leu in GyrA, and 3 of those isolates were high-BLNAR isolates. In summary, this study shows that multiclonal high-BLNAR strains predominate in a Japanese university hospital. Isolates remain sensitive to quinolones, but vigilance is required to prevent the development of fluoroquinolone resistance in high-BLNAR strains., (Copyright © 2018 American Society for Microbiology.)
- Published
- 2018
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26. Isolation of a mcr-1-harbouring Escherichia coli isolate from a human clinical setting in Sapporo, Japan.
- Author
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Sato T, Fukuda A, Usui M, Shinagawa M, Shiraishi T, Tamura Y, Takahashi S, and Yokota SI
- Subjects
- Adolescent, Adult, Female, Hospitals, University, Humans, Infant, Japan, Male, Microbial Sensitivity Tests, Multilocus Sequence Typing, Polymerase Chain Reaction, Sequence Analysis, DNA, Anti-Bacterial Agents pharmacology, Colistin pharmacology, Drug Resistance, Bacterial, Escherichia coli genetics, Escherichia coli isolation & purification, Escherichia coli Infections microbiology, Escherichia coli Proteins genetics
- Published
- 2018
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27. Complete Genome Sequence of Multidrug-Resistant Streptococcus pneumoniae Serotype 19F Isolated from an Invasive Infection in Sapporo, Japan.
- Author
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Sato T, Ohkoshi Y, Wada T, Fukushima Y, Murabayashi H, Takakuwa Y, Nishiyama K, Shiraishi T, Nakajima C, Suzuki Y, and Yokota SI
- Abstract
Invasive infection of multidrug-resistant Streptococcus pneumoniae is a serious clinical concern. Here, we report the complete genome sequence of a multidrug-resistant S. pneumoniae serotype 19F strain isolated from a patient with an invasive infection in Sapporo, Japan., (Copyright © 2017 Sato et al.)
- Published
- 2017
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28. Tigecycline Nonsusceptibility Occurs Exclusively in Fluoroquinolone-Resistant Escherichia coli Clinical Isolates, Including the Major Multidrug-Resistant Lineages O25b:H4-ST131-H30R and O1-ST648.
- Author
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Sato T, Suzuki Y, Shiraishi T, Honda H, Shinagawa M, Yamamoto S, Ogasawara N, Takahashi H, Takahashi S, Tamura Y, and Yokota SI
- Subjects
- Adult, Aged, Anti-Bacterial Agents pharmacology, Bacterial Outer Membrane Proteins genetics, Drug Resistance, Multiple, Bacterial genetics, Escherichia coli isolation & purification, Escherichia coli Infections drug therapy, Escherichia coli Infections microbiology, Escherichia coli Proteins genetics, Female, Gene Expression Regulation, Bacterial drug effects, Humans, Japan, Lipoproteins genetics, Male, Membrane Transport Proteins genetics, Microbial Sensitivity Tests, Middle Aged, Minocycline pharmacology, Multidrug Resistance-Associated Proteins genetics, Mutation, Tigecycline, Drug Resistance, Multiple, Bacterial drug effects, Escherichia coli drug effects, Escherichia coli genetics, Fluoroquinolones pharmacology, Minocycline analogs & derivatives
- Abstract
Tigecycline (TGC) is a last-line drug for multidrug-resistant Enterobacteriaceae We investigated the mechanism(s) underlying TGC nonsusceptibility (TGC resistant/intermediate) in Escherichia coli clinical isolates. The MIC of TGC was determined for 277 fluoroquinolone-susceptible isolates (ciprofloxacin [CIP] MIC, <0.125 mg/liter) and 194 fluoroquinolone-resistant isolates (CIP MIC, >2 mg/liter). The MIC
50 and MIC90 for TGC in fluoroquinolone-resistant isolates were 2-fold higher than those in fluoroquinolone-susceptible isolates (MIC50 , 0.5 mg/liter versus 0.25 mg/liter; MIC90 , 1 mg/liter versus 0.5 mg/liter, respectively). Two fluoroquinolone-resistant isolates (O25b:H4-ST131-H30R and O125:H37-ST48) were TGC resistant (MICs of 4 and 16 mg/liter, respectively), and four other isolates of O25b:H4-ST131-H30R and an isolate of O1-ST648 showed an intermediate interpretation (MIC, 2 mg/liter). No TGC-resistant/intermediate strains were found among the fluoroquinolone-susceptible isolates. The TGC-resistant/intermediate isolates expressed higher levels of acrA and acrB and had lower intracellular TGC concentrations than susceptible isolates, and they possessed mutations in acrR and/or marR The MICs of acrAB-deficient mutants were markedly lower (0.25 mg/liter) than those of the parental strain. After continuous stepwise exposure to CIP in vitro, six of eight TGC-susceptible isolates had reduced TGC susceptibility. Two of them acquired TGC resistance (TGC MIC, 4 mg/liter) and exhibited expression of acrA and acrB and mutations in acrR and/or marR In conclusion, a population of fluoroquinolone-resistant E. coli isolates, including major extraintestinal pathogenic lineages O25b:H4-ST131-H30R and O1-ST648, showed reduced susceptibility to TGC due to overexpression of the efflux pump AcrAB-TolC, leading to decreased intracellular concentrations of the antibiotics that may be associated with the development of fluoroquinolone resistance., (Copyright © 2017 American Society for Microbiology.)- Published
- 2017
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29. Structural diversity and biological significance of lipoteichoic acid in Gram-positive bacteria: focusing on beneficial probiotic lactic acid bacteria.
- Author
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Shiraishi T, Yokota S, Fukiya S, and Yokota A
- Abstract
Bacterial cell surface molecules are at the forefront of host-bacterium interactions. Teichoic acids are observed only in Gram-positive bacteria, and they are one of the main cell surface components. Teichoic acids play important physiological roles and contribute to the bacterial interaction with their host. In particular, lipoteichoic acid (LTA) anchored to the cell membrane has attracted attention as a host immunomodulator. Chemical and biological characteristics of LTA from various bacteria have been described. However, most of the information concerns pathogenic bacteria, and information on beneficial bacteria, including probiotic lactic acid bacteria, is insufficient. LTA is structurally diverse. Strain-level structural diversity of LTA is suggested to underpin its immunomodulatory activities. Thus, the structural information on LTA in probiotics, in particular strain-associated diversity, is important for understanding its beneficial roles associated with the modulation of immune response. Continued accumulation of structural information is necessary to elucidate the detailed physiological roles and significance of LTA. In this review article, we summarize the current state of knowledge on LTA structure, in particular the structure of LTA from lactic acid bacteria. We also describe the significance of structural diversity and biological roles of LTA.
- Published
- 2016
- Full Text
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30. Characterization of a Lactobacillus gasseri JCM 1131T lipoteichoic acid with a novel glycolipid anchor structure.
- Author
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Shiraishi T, Yokota S, Morita N, Fukiya S, Tomita S, Tanaka N, Okada S, and Yokota A
- Subjects
- Alanine chemistry, Amino Acid Substitution, Cell Membrane chemistry, Fatty Acids chemistry, Glycerol metabolism, Glycerophosphates chemistry, Hexoses chemistry, Lactobacillus genetics, Glycolipids chemistry, Lactobacillus chemistry, Lipopolysaccharides chemistry, Teichoic Acids chemistry
- Abstract
We determined the chemical structure of lipoteichoic acid (LTA) from Lactobacillus gasseri JCM 1131(T). The repeating unit was comprised of glycerolphosphate and 2-alanylglycerolphosphate. The glycolipid anchor was tetrahexosylglycerol with two or three acyl groups. To our knowledge, this is the first demonstration of a tetrahexose structure in an LTA glycolipid anchor.
- Published
- 2013
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31. Influence of menstruation on the microbiota of healthy women's labia minora as analyzed using a 16S rRNA gene-based clone library method.
- Author
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Shiraishi T, Fukuda K, Morotomi N, Imamura Y, Mishima J, Imai S, Miyazawa K, and Taniguchi H
- Subjects
- Actinobacteria isolation & purification, Adult, Bacterial Load, Bacteriological Techniques methods, Female, Gardnerella vaginalis isolation & purification, Humans, Japan, Lactobacillus isolation & purification, Women's Health, Cloning, Molecular methods, Gene Library, Genes, rRNA genetics, Menstruation, Metagenome, RNA, Ribosomal, 16S genetics, Vulva microbiology
- Abstract
The aim of this study was to determine the influence of menstruation on the bacterial population of healthy Japanese women's vulvas, especially the labia minora. Labia minora swabs were obtained from 10 premenopausal, nonpregnant Japanese women at premenstruation and on day 2 of menstruation. Vaginal swabs were also obtained from 3 out of the 10 women. No significant difference was found in the average bacterial cell count between the menstruation and premenstruation samples. Molecular analysis using a 16S rRNA gene-based clone library method detected 22 genera from the labia minora swabs (total 20), with the genus Lactobacillus being predominant at both premenstruation and during menstruation in 7 out of the 10 women. Of the other 3 women, 2 showed various kinds of bacterial species, including oral and fecal bacteria, with Atopobium vaginae and Gardnerella vaginalis predominating in the remaining woman's vulva in both conditions. In total, 6 out of 10 cases (60%) showed significantly different microbiota of the labia minora between the two conditions. These results imply that menstruation may promote a distortion of the bacterial flora around the vulva, although it causes no significant increase of the bacterial count.
- Published
- 2011
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