17 results on '"Smith, Daniel F. Q."'
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2. Galleria mellonella immune melanization is fungicidal during infection
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Smith, Daniel F. Q., Dragotakes, Quigly, Kulkarni, Madhura, Hardwick, J. Marie, and Casadevall, Arturo
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- 2022
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3. A glycan FRET assay for detection and characterization of catalytic antibodies to the Cryptococcus neoformans capsule
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Crawford, Conor J., Wear, Maggie P., Smith, Daniel F. Q., d’Errico, Clotilde, McConnell, Scott A., Casadevall, Arturo, and Oscarson, Stefan
- Published
- 2021
4. Disaster mycology.
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Smith, Daniel F. Q. and Casadevall, Arturo
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MYCOLOGY ,DUST storms ,MYCOSES ,NATURAL disasters ,SOIL fungi - Abstract
Copyright of Biomédica: Revista del Instituto Nacional de Salud is the property of Instituto Nacional de Salud of Colombia and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2023
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5. Exploring accidental virulence: Experimentally evolving yeast to adhere better to plastic led to adaptations that increased their ability to cause an infection.
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SMITH, DANIEL F. Q.
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YEAST , *PLASTICS , *PATHOGENIC fungi - Abstract
A study published in eLife explores the concept of accidental virulence in microbes, specifically focusing on the fungus Saccharomyces cerevisiae. The researchers experimentally evolved the yeast to adhere better to plastic, which led to adaptations that increased its ability to cause infection. The study provides evidence supporting the accidental virulence theory, which suggests that environmental factors can cause microbes to gain properties that allow them to survive and cause disease if they encounter a potential host. The findings have implications for understanding how fungi can become better adapted to living on plastic surfaces and potentially contribute to the emergence of new types of fungal infections. [Extracted from the article]
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- 2024
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6. Similar evolutionary trajectories in an environmental Cryptococcus neoformans isolate after human and murine infection.
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Sephton-Clark, Poppy, McConnell, Scott A., Grossman, Nina, Baker, Rosanna P., Dragotakes, Quigly, Yunfan Fan, Man Shun Fu, Gerbig, Gracen, Greengo, Seth, Marie Hardwick, J., Kulkarni, Madhura, Levitz, Stuart M., Nosanchuk, Joshua D., Shoham, Shmuel, Smith, Daniel F. Q., Stempinski, Piotr, Timp, Winston, Wear, Maggie P., Cuomo, Christina A., and Casadevall, Arturo
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CRYPTOCOCCUS neoformans ,CHROMATIN-remodeling complexes ,SINGLE nucleotide polymorphisms ,WHOLE genome sequencing ,FRAMESHIFT mutation ,FOOD of animal origin ,IMMUNOCOMPROMISED patients - Abstract
A pet cockatoo was the suspected source of Cryptococcus neoformans recovered from an immunocompromised patient with cryptococcosis based on molecular analyses available in 2000. Here, we report whole genome sequence analysis of the clinical and cockatoo strains. Both are closely related MATα strains belonging to the VNII lineage, confirming that the human infection likely originated from pet bird exposure. The two strains differ by 61 single nucleotide polymorphisms, including eight nonsynonymous changes involving seven genes. To ascertain whether changes in these genes are selected for during mammalian infection, we passaged the cockatoo strain in mice. Remarkably, isolates obtained from mouse tissue possess a frameshift mutation in one of the seven genes altered in the human sample (LQVO5_000317), a gene predicted to encode an SWI– SNF chromatin-remodeling complex protein. In addition, both cockatoo and patient strains as well as mouse-passaged isolates obtained from brain tissue had a premature stop codon in a homologue of ZFC3 (LQVO5_004463), a predicted single-zinc finger containing protein, which is associated with larger capsules when deleted and reverted to a full-length protein in the mouse-passaged isolates obtained from lung tissue. The patient strain and mouse-passaged isolates show variability in virulence factors, with differences in capsule size, melanization, rates of nonlytic expulsion from macrophages, and amoeba predation resistance. Our results establish that environmental strains undergo genomic and phenotypic changes during mammalian passage, suggesting that animal virulence can be a mechanism for genetic change and that the genomes of clinical isolates may provide a readout of mutations acquired during infection. [ABSTRACT FROM AUTHOR]
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- 2023
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7. Melanization of Candida auris Is Associated with Alteration of Extracellular pH.
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Smith, Daniel F. Q., Mudrak, Nathan J., Zamith-Miranda, Daniel, Honorato, Leandro, Nimrichter, Leonardo, Chrissian, Christine, Smith, Barbara, Gerfen, Gary, Stark, Ruth E., Nosanchuk, Joshua D., and Casadevall, Arturo
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MELANINS , *CANDIDA , *FUNGAL virulence , *GREATER wax moth , *PEPTIDES , *OXIDATIVE stress - Abstract
Candida auris is a recently emerged global fungal pathogen, which causes life-threatening infections, often in healthcare settings. C. auris infections are worrisome because the fungus is often resistant to multiple antifungal drug classes. Furthermore, C. auris forms durable and difficult to remove biofilms. Due to the relatively recent, resilient, and resistant nature of C. auris, we investigated whether it produces the common fungal virulence factor melanin. Melanin is a black-brown pigment typically produced following enzymatic oxidation of aromatic precursors, which promotes fungal virulence through oxidative stress resistance, mammalian immune response evasion, and antifungal peptide and pharmaceutical inactivation. We found that certain strains of C. auris oxidized L-DOPA and catecholamines into melanin. Melanization occurred extracellularly in a process mediated by alkalinization of the extracellular environment, resulting in granule-like structures that adhere to the fungus' external surface. C. auris had relatively high cell surface hydrophobicity, but there was no correlation between hydrophobicity and melanization. Melanin protected the fungus from oxidative damage, but we did not observe a protective role during infection of macrophages or Galleria mellonella larvae. In summary, C. auris alkalinizes the extracellular medium, which promotes the non-enzymatic oxidation of L-DOPA to melanin that attaches to its surface, thus illustrating a novel mechanism for fungal melanization. [ABSTRACT FROM AUTHOR]
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- 2022
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8. On the relationship between Pathogenic Potential and Infective Inoculum.
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Smith, Daniel F. Q. and Casadevall, Arturo
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PARASITES , *SURVIVAL rate , *CRYPTOCOCCUS neoformans , *PATHOGENIC fungi , *GREATER wax moth , *ANIMAL tracks , *ECONOMIES of scale - Abstract
Pathogenic Potential (PP) is a mathematical description of an individual microbe, virus, or parasite's ability to cause disease in a host, given the variables of inoculum, signs of disease, mortality, and in some instances, median survival time of the host. We investigated the relationship between pathogenic potential (PP) and infective inoculum (I) using two pathogenic fungi in the wax moth Galleria mellonella with mortality as the relevant outcome. Our analysis for C. neoformans infection revealed negative exponential relationship between PP and I. Plotting the log(I) versus the Fraction of animals with signs or symptoms (Fs) over median host survival time (T) revealed a linear relationship, with a slope that varied between the different fungi studied and a y-intercept corresponding to the inoculum that produced no signs of disease. The I vs Fs/T slope provided a measure of the pathogenicity of each microbial species, which we call the pathogenicity constant or kPath. The kPath provides a new parameter to quantitatively compare the relative virulence and pathogenicity of microbial species for a given host. In addition, we investigated the PP and Fs/T from values found in preexisting literature. Overall, the relationship between Fs/T and PP versus inoculum varied among microbial species and extrapolation to zero signs of disease allowed the calculation of the lowest pathogenic inoculum (LPI) of a microbe. Microbes tended to fall into two groups: those with positive linear relationships between PP and Fs/T vs I, and those that had a negative exponential PP vs I relationship with a positive logarithmic Fs/T vs I relationship. The microbes with linear relationships tended to be bacteria, whereas the exponential-based relationships tended to be fungi or higher order eukaryotes. Differences in the type and sign of the PP vs I and Fs/T vs I relationships for pathogenic microbes suggest fundamental differences in host-microbe interactions leading to disease. Author summary: The ability of a microbe, virus, or parasite to cause disease is dependent on multiple factors, virulence factors. host immune defenses, the infective inoculum, and the type of immune response. For many microbes their capacity for causing disease is highly dependent on the inoculum. The mathematical formula for Pathogenic Potential (PP) is a way to compare the ability of an organism to have a pathogenic effect, as measured by Fraction with signs or symptoms (Fs), mortality (M), and inoculum (I), and can include the median survival time of the host (T). Increasing inoculum of the fungus Cryptococcus neoformans for a moth host resulted in exponentially smaller pathogenic potential, and the Fs/T versus inoculum plot showed a logarithmic relationship. Together, these relationships show diminishing returns with increasing cryptococcal inoculum, in which each individual fungus plays a smaller role in pathogenicity. Literature data shows that other microbes, mostly bacteria, had linear Fs/T versus inoculum relationships, which indicate that each bacterium contributed an equal amount to pathogenicity. These differences in relationships can point to differences in host-microbe interactions and suggest new ways in which the organism causes disease. [ABSTRACT FROM AUTHOR]
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- 2022
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9. Glyphosate inhibits melanization and increases susceptibility to infection in insects.
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Smith, Daniel F. Q., Camacho, Emma, Thakur, Raviraj, Barron, Alexander J., Dong, Yuemei, Dimopoulos, George, Broderick, Nichole A., and Casadevall, Arturo
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GREATER wax moth , *GLYPHOSATE , *POLLUTANTS , *PYRALIDAE , *INSECTS , *ANOPHELES gambiae , *INSECT defenses , *MICROBIAL virulence - Abstract
Melanin, a black-brown pigment found throughout all kingdoms of life, has diverse biological functions including UV protection, thermoregulation, oxidant scavenging, arthropod immunity, and microbial virulence. Given melanin's broad roles in the biosphere, particularly in insect immune defenses, it is important to understand how exposure to ubiquitous environmental contaminants affects melanization. Glyphosate—the most widely used herbicide globally—inhibits melanin production, which could have wide-ranging implications in the health of many organisms, including insects. Here, we demonstrate that glyphosate has deleterious effects on insect health in 2 evolutionary distant species, Galleria mellonella (Lepidoptera: Pyralidae) and Anopheles gambiae (Diptera: Culicidae), suggesting a broad effect in insects. Glyphosate reduced survival of G. mellonella caterpillars following infection with the fungus Cryptococcus neoformans and decreased the size of melanized nodules formed in hemolymph, which normally help eliminate infection. Glyphosate also increased the burden of the malaria-causing parasite Plasmodium falciparum in A. gambiae mosquitoes, altered uninfected mosquito survival, and perturbed the microbial composition of adult mosquito midguts. Our results show that glyphosate's mechanism of melanin inhibition involves antioxidant synergy and disruption of the reaction oxidation–reduction balance. Overall, these findings suggest that glyphosate's environmental accumulation could render insects more susceptible to microbial pathogens due to melanin inhibition, immune impairment, and perturbations in microbiota composition, potentially contributing to declines in insect populations. Glyphosate, the most commonly used herbicide in the world, inhibits the production of melanin. Melanin is an important pigment and a key component of the insect immune system; this study shows that glyphosate weakens insects' melanin-based immune system and makes them more vulnerable to infections, including with the human malaria parasite Plasmodium falciparum. [ABSTRACT FROM AUTHOR]
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- 2021
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10. Correction: On the relationship between Pathogenic Potential and Infective Inoculum.
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Smith, Daniel F. Q. and Casadevall, Arturo
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CRYPTOCOCCUS neoformans , *ANTI-infective agents , *MILTEFOSINE , *CRYPTOCOCCOSIS , *MENINGOENCEPHALITIS - Published
- 2023
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11. Listeria monocytogenes virulence factors, including listeriolysin O, are secreted in biologically active extracellular vesicles.
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Coelho, Carolina, Brown, Lisa, Maryam, Maria, Vij, Raghav, Smith, Daniel F. Q., Burnet, Meagan C., Kyle, Jennifer E., Heyman, Heino M., Ramirez, Jasmine, Prados-Rosales, Rafael, Lauvau, Gregoire, Nakayasu, Ernesto S., Brady, Nathan R., Hamacher-Brady, Anne, Coppens, Isabelle, and Casadevall, Arturo
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LISTERIA monocytogenes , *VIRULENCE of bacteria , *LISTERIOLYSIN O , *VESICLES (Cytology) , *MAMMALIAN cell cycle - Abstract
Outer membrane vesicles produced by Gram-negative bacteria have been studied for half a century but the possibility that Gram-positive bacteria secrete extracellular vesicles (EVs) was not pursued until recently due to the assumption that the thick peptidoglycan cell wall would prevent their release to the environment. However, following their discovery in fungi, which also have cell walls, EVs have now been described for a variety of Gram-positive bacteria. EVs purified from Gram-positive bacteria are implicated in virulence, toxin release, and transference to host cells, eliciting immune responses, and spread of antibiotic resistance. Listeria monocytogenes is a Gram-positive bacterium that causes listeriosis. Here we report that L. monocytogenes produces EVs with diameters ranging from 20 to 200 nm, containing the pore-forming toxin listeriolysin O (LLO) and phosphatidylinositol- specific phospholipase C (PI-PLC). Cell-free EV preparations were toxic to mammalian cells, the murine macrophage cell line J774.16, in a LLO-dependent manner, evidencing EV biological activity. The deletion of plcA increased EV toxicity, suggesting PI-PLC reduced LLO activity. Using simultaneous metabolite, protein, and lipid extraction (MPLEx) multiomics we characterized protein, lipid, and metabolite composition of bacterial cells and secreted EVs and found that EVs carry the majority of listerial virulence proteins. Using immunogold EM we detected LLO at several organelles within infected human epithelial cells and with high-resolution fluorescence imaging we show that dynamic lipid structures are released from L. monocytogenes during infection. Our findings demonstrate that L. monocytogenes uses EVs for toxin release and implicate these structures in mammalian cytotoxicity. [ABSTRACT FROM AUTHOR]
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- 2019
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12. Thermal and pigment characterization of environmental fungi in the urban heat island of Baltimore City.
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Smith DFQ, Bencomo A, Faiez TS, and Casadevall A
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One of the major barriers of fungal infections of mammals is the inability to grow and/or survive at mammalian body temperature, typically around 37°C. This has provided mammals an advantage over fungi. However, environmental fungi may soon adapt to persist at higher temperatures, consistent with mammalian body temperature, due to thermal selection pressures imposed by climate change, global warming, and increased frequency of extreme heat events. Consequently, there is a need for more updated information about the thermal tolerance range of fungi near humans, such as in urban areas. The heat island effect suggests that cities are up to 8°C warmer than their suburban counterparts because of increased heat production, asphalt coatings and reduced greenspace among other factors, and it is more common in lower income and marginalized urban communities. Thus, urban centers are at increased risk for the emergence of heat tolerant fungi. In this study, we developed a methodology to collect and archive fungal isolates from sidewalk and soil samples in both warmer and cooler neighborhoods in Baltimore, Maryland. We demonstrate a novel methodology for fungal sample collection from sidewalks, employing the use of standardized and commercially available taffy. Analysis of fungal isolates collected from warmer neighborhoods revealed greater thermal tolerance and lower pigmentation, suggesting local adaptation to heat. Lower pigmentation in hotter areas is consistent with the notion that fungi use pigmentation to help regulate their temperature. Further, we identified the robust presence of the polyextremotolerant fungus Aureobasidium pullalans from the warmest neighborhood in Baltimore , further showing that the extreme conditions of cities can drive proliferation of extremotolerant fungi. This study develops new techniques for environmental fungal collection and provides insight on the fungal census in an urban setting that can inform future work to study how urban environments may drive stress/thermotolerance in fungi, which could alter fungal interactions with humans and impact human health.
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- 2023
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13. Disaster mycology
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Smith DFQ and Casadevall A
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- Humans, Animals, Mycology, Droughts, Mammals, Disasters, Microbiota
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Natural and human-made disasters have long played a role in shaping the environment and microbial communities, also affecting non-microbial life on Earth. Disaster microbiology is a new concept based on the notion that a disaster changes the environment causing adaptation or alteration of microbial populations -growth, death, transportation to a new area, development traits, or resistance- that can have downstream effects on the affected ecosystem. Such downstream effects include blooms of microbial populations and the ability to colonize a new niche or host, cause disease, or survive in former extreme conditions. Throughout history, fungal populations have been affected by disasters. There are prehistoric archeological records of fungal blooms after asteroid impacts and fungi implicated in the fall of the dinosaurs. In recent times, drought and dust storms have caused disturbance of soil fungi, and hurricanes have induced the growth of molds on wet surfaces, resulting in an increased incidence of fungal disease. Probably, the anticipated increase in extreme heat would force fungi adaptation to survive at high temperatures, like those in the human body, and thus be able to infect mammals. This may lead to a drastic rise of new fungal diseases in humans.
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- 2023
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14. Disaster Microbiology-a New Field of Study.
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Smith DFQ and Casadevall A
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- Climate Change, Humans, Disaster Planning, Disasters
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Natural and human-made disasters can cause tremendous physical damage, societal change, and suffering. In addition to their effects on people, disasters have been shown to alter the microbial population in the area affected. Alterations for microbial populations can lead to new ecological interactions, with additional potentially adverse consequences for many species, including humans. Disaster-related stressors can be powerful forces for microbial selection. Studying microbial adaptation in disaster sites can reveal new biological processes, including mechanisms by which some microbes could become pathogenic and others could become beneficial (e.g., used for bioremediation). Here we survey examples of how disasters have affected microbiology and suggest that the topic of "disaster microbiology" is itself a new field of study. Given the accelerating pace of human-caused climate change and the increasing encroachment of the natural word by human activities, it is likely that this area of research will become increasingly relevant to the broader field of microbiology. Since disaster microbiology is a broad term open to interpretation, we propose criteria for what phenomena fall under its scope. The basic premise is that there must be a disaster that causes a change in the environment, which then causes an alteration to microbes (either a physical or biological adaptation), and that this adaptation must have additional ramifications.
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- 2022
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15. Cryptococcus neoformans Virulence Assay Using a Galleria mellonella Larvae Model System.
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Stempinski PR, Smith DFQ, and Casadevall A
- Abstract
Cryptococcus neoformans is a human pathogenic fungus that can cause pulmonary infections and meningitis in both immunocompromised and otherwise healthy individuals. Limited treatment options and a high mortality rate underlie the necessity for extensive research of the virulence of C. neoformans . Here we describe a detailed protocol for using the Galleria mellonella (Greater Wax Moth) larvae as a model organism for the virulence analysis of the cryptococcal infections. This protocol describes in detail the evaluation of G. mellonella larvae viability and the alternatives for troubleshooting the infection procedure. This protocol can be easily modified to study different inocula or fungal species, or the effects of a drug or antifungal agent on fungal disease within the larvae. We describe modified alternative versions of the protocol that allow using G. mellonella to study fungal diseases with different inocula and at different temperatures., Competing Interests: Competing interests We declare no conflict of interest., (Copyright © 2022 The Authors; exclusive licensee Bio-protocol LLC.)
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- 2022
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16. Fungal immunity and pathogenesis in mammals versus the invertebrate model organism Galleria mellonella.
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Smith DFQ and Casadevall A
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- Animals, Disease Models, Animal, Host-Pathogen Interactions, Humans, Invertebrates microbiology, Larva immunology, Larva microbiology, Mammals microbiology, Moths microbiology, Mycoses microbiology, Fungi immunology, Immunity, Mammals immunology, Moths immunology, Mycoses immunology, Virulence, Virulence Factors
- Abstract
In recent decades, Galleria mellonella (Lepidoptera: Pyralidae) have emerged as a model system to explore experimental aspects of fungal pathogenesis. The benefits of the G. mellonella model include being faster, cheaper, higher throughput and easier compared with vertebrate models. Additionally, as invertebrates, their use is subject to fewer ethical and regulatory issues. However, for G. mellonella models to provide meaningful insight into fungal pathogenesis, the G. mellonella-fungal interactions must be comparable to mammalian-fungal interactions. Indeed, as discussed in the review, studies suggest that G. mellonella and mammalian immune systems share many similarities, and fungal virulence factors show conserved functions in both hosts. While the moth model has opened novel research areas, many comparisons are superficial and leave large gaps of knowledge that need to be addressed concerning specific mechanisms underlying G. mellonella-fungal interactions. Closing these gaps in understanding will strengthen G. mellonella as a model for fungal virulence in the upcoming years. In this review, we provide comprehensive comparisons between fungal pathogenesis in mammals and G. mellonella from immunological and virulence perspectives. When information on an antifungal immune component is unknown in G. mellonella, we include findings from other well-studied Lepidoptera. We hope that by outlining this information available in related species, we highlight areas of needed research and provide a framework for understanding G. mellonella immunity and fungal interactions., (© The Author(s) 2021. Published by Oxford University Press on behalf of FEMS.)
- Published
- 2021
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17. The Role of Melanin in Fungal Pathogenesis for Animal Hosts.
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Smith DFQ and Casadevall A
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- Animals, Fungi immunology, Host-Pathogen Interactions immunology, Host-Pathogen Interactions physiology, Humans, Lectins, C-Type metabolism, Melanins immunology, Virulence, Fungi metabolism, Fungi pathogenicity, Melanins metabolism
- Abstract
Melanins are a class of pigments that are ubiquitous throughout biology. They play incredibly diverse and important roles ranging from radiation protection to immune defense, camouflage, and virulence. Fungi have evolved to use melanin to be able to persist in the environment and within organisms. Fungal melanins are often located within the cell well and are able to neutralize reactive oxygen species and other radicals, defend against UV radiation, bind and sequester non-specific peptides and compounds, and produce a physical barrier that defends the cell. For this reason, melanized fungi are often well-suited to be human pathogens-melanin allows fungi to neutralize the microbicidal oxidative bursts of our innate immune system, bind and inactivate to antimicrobial peptides and enzymes, sequester antifungal pharmaceuticals, and create a shield to block immune recognition of the fungus. Due to the importance and pervasiveness of melanin in fungal virulence, mammalian immune systems have evolved antifungal strategies that involve directly detecting and binding to fungal melanins. Such strategies include the use of melanin-specific antibody responses and C-type lectins like the newly discovered melanin-specific MelLec receptor.
- Published
- 2019
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