285 results on '"T. Nishimaki"'
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2. Co-Stimulation with TWEAK and TGF-β1 Induces Steroid-Insensitive TSLP and CCL5 Production in BEAS-2B Human Bronchial Epithelial Cells.
- Author
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Abe S, Harada N, Sandhu Y, Sasano H, Tanabe Y, Ueda S, Nishimaki T, Sato Y, Takeshige T, Harada S, Akiba H, and Takahashi K
- Subjects
- Humans, Cell Line, NF-kappa B metabolism, Dual Specificity Phosphatase 1 metabolism, Dual Specificity Phosphatase 1 genetics, Epithelial-Mesenchymal Transition drug effects, Cadherins metabolism, Signal Transduction drug effects, Cytokine TWEAK metabolism, Chemokine CCL5 metabolism, Transforming Growth Factor beta1 metabolism, Cytokines metabolism, Thymic Stromal Lymphopoietin, Bronchi metabolism, Bronchi cytology, Bronchi drug effects, Epithelial Cells metabolism, Epithelial Cells drug effects, Dexamethasone pharmacology
- Abstract
Steroid-resistant asthma is a common cause of refractory asthma. Type 2 inflammation is the main inflammatory response in asthma, and the mechanism underlying the steroid-resistance of type 2 inflammation has not been completely elucidated. Tumor-necrosis-factor-like apoptosis-inducing factor (TWEAK) and transforming growth factor (TGF)-β1 are involved in epithelial-mesenchymal transition (EMT) and the production of thymic stromal lymphopoietin (TSLP) and C-C motif chemokine ligand 5 (CCL5). We herein hypothesize that the combined exposure to TWEAK and TGF-β1 may result in the development of steroid resistance in bronchial epithelial cells. The bronchial epithelial cell line BEAS-2B was cultured with or without TGF-β1 or TWEAK, in the presence or absence of dexamethasone (DEX). The roles of Smad-independent pathways and MAP kinase phosphatase 1 (MKP-1) were also explored. Co-stimulation of TWEAK and TGF-β1 induced E-cadherin reduction, N-cadherin upregulation, and TSLP and CCL5 production, which were not suppressed by DEX. Inhibition of the nuclear factor kappa beta (NF-κB) and mitogen-activated protein kinase pathways downregulated steroid-unresponsive TSLP and CCL5 production, whereas knockdown of MKP-1 improved steroid-unresponsive TSLP production, induced by co-stimulation with TWEAK and TGF-β1. Therefore, co-stimulation with TWEAK and TGF-β1 can induce the steroid-insensitive production of TSLP and CCL5 in the bronchial epithelium and may contribute to airway inflammation.
- Published
- 2024
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3. Management of anti-melanoma differentiation-associated gene 5 antibody-induced refractory dermatomyositis complicated by interstitial pneumonia using tofacitinib and its outcomes: a case report.
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Imai Y, Yorozuya T, Hatakeyama T, Nishimaki T, Takahashi T, Ishikawa T, Kondoh S, Asai Y, Mori Y, Saito A, Nishikiori H, Hosaka M, and Chiba H
- Subjects
- Humans, Male, Middle Aged, Autoantibodies blood, Immunosuppressive Agents therapeutic use, Treatment Outcome, Protein Kinase Inhibitors therapeutic use, Dermatomyositis drug therapy, Dermatomyositis complications, Dermatomyositis immunology, Lung Diseases, Interstitial drug therapy, Pyrimidines therapeutic use, Interferon-Induced Helicase, IFIH1 immunology, Piperidines therapeutic use, Piperidines administration & dosage
- Abstract
Background: Clinical amyopathic dermatomyositis is characterized by cutaneous symptoms but lacks muscle symptoms. Anti-melanoma differentiation-associated gene 5 antibodies are frequently found in Japanese patients with clinical amyopathic dermatomyositis. Patients with rapidly progressive interstitial lung disease with positive anti-melanoma differentiation-associated gene 5 antibodies have poor prognoses, and majority of them are treated with combination immunosuppressive therapy; however, the best treatment is yet to be determined., Case Presentation: A 52-year-old Asian male patient presented with a chief complaint of dyspnea on exertion. He had a typical skin rash and rapidly progressive interstitial pneumonia. Additionally, anti-melanoma differentiation-associated gene 5 antibodies were detected; therefore, he was diagnosed with dermatomyositis-associated interstitial pneumonia. Respiratory failure worsened despite administering steroid pulse therapy, tacrolimus, and cyclophosphamide. Consequently, plasma exchange was performed on day 13 of admission. After a slight improvement, the patient's respiratory failure worsened. Thus, cyclophosphamide was replaced by tofacitinib on day 28. Although respiratory failure improved and the progression of interstitial pneumonia seemed under control, βD-glucan level increased and Aspergillus antigen was detected on day 49. Micafungin and voriconazole were administered, but the patient succumbed to worsening respiratory failure on day 61. The pathological autopsy revealed multiple nodular lesions with cavity formation in both lungs and the presence of Aspergillus with severe neutrophilic infiltration and necrosis, which supported the diagnosis of invasive pulmonary aspergillosis., Conclusion: The patient with anti-melanoma differentiation-associated gene 5 antibody-related rapidly progressive interstitial lung disease, whose disease was difficult to control after the administration of triple immunosuppressive therapy (steroids, tacrolimus, and cyclophosphamide), showed good response with tofacitinib. Unfortunately, the patient died of invasive pulmonary aspergillosis owing to severe immunosuppression; thus, the signs of complications should be promptly detected., (© 2024. The Author(s).)
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- 2024
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4. Pterostilbene, a Dimethyl Derivative of Resveratrol, Exerts Cytotoxic Effects on Melanin-Producing Cells through Metabolic Activation by Tyrosinase.
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Tanaka H, Nishimaki-Mogami T, Tamehiro N, Shibata N, Mandai H, Ito S, and Wakamatsu K
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- Humans, Animals, Mice, Resveratrol pharmacology, Resveratrol analogs & derivatives, Activation, Metabolic, Cell Line, Tumor, HEK293 Cells, Melanocytes drug effects, Melanocytes metabolism, Cell Survival drug effects, Monophenol Monooxygenase metabolism, Stilbenes pharmacology, Stilbenes metabolism, Stilbenes chemistry, Melanins metabolism, Melanins biosynthesis
- Abstract
Pterostilbene (PTS), which is abundant in blueberries, is a dimethyl derivative of the natural polyphenol resveratrol (RES). Several plant species, including peanuts and grapes, also produce PTS. Although RES has a wide range of health benefits, including anti-cancer properties, PTS has a robust pharmacological profile that includes a better intestinal absorption and an increased hepatic stability compared to RES. Indeed, PTS has a higher bioavailability and a lower toxicity compared to other stilbenes, making it an attractive drug candidate for the treatment of various diseases, including diabetes, cancer, cardiovascular disease, neurodegenerative disorders, and aging. We previously reported that RES serves as a substrate for tyrosinase, producing an o -quinone metabolite that is highly cytotoxic to melanocytes. The present study investigated whether PTS may also be metabolized by tyrosinase, similarly to RES. PTS was oxidized as a substrate by tyrosinase to form an o -quinone, which reacted with thiols, such as N -acetyl-L-cysteine, to form di- and tri-adducts. We also confirmed that PTS was taken up and metabolized by human tyrosinase-expressing 293T cells in amounts several times greater than RES. In addition, PTS showed a tyrosinase-dependent cytotoxicity against B16BL6 melanoma cells that was stronger than RES and also inhibited the formation of melanin in B16BL6 melanoma cells and in the culture medium. These results suggest that the two methyl groups of PTS, which are lipophilic, increase its membrane permeability, making it easier to bind to intracellular proteins, and may therefore be more cytotoxic to melanin-producing cells.
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- 2024
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5. MAP3K19 Affects TWEAK-Induced Response in Cultured Bronchial Epithelial Cells and Regulates Allergic Airway Inflammation in an Asthma Murine Model.
- Author
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Sandhu Y, Harada N, Harada S, Nishimaki T, Sasano H, Tanabe Y, Takeshige T, Matsuno K, Ishimori A, Katsura Y, Ito J, Akiba H, and Takahashi K
- Abstract
The mitogen-activated protein kinase (MAPK) signaling pathway is involved in the epithelial-mesenchymal transition (EMT) and asthma; however, the role of mitogen-activated protein kinase kinase kinase 19 (MAP3K19) remains uncertain. Therefore, we investigated the involvement of MAP3K19 in in vitro EMT and ovalbumin (OVA)-induced asthma murine models. The involvement of MAP3K19 in the EMT and the production of cytokines and chemokines were analyzed using a cultured bronchial epithelial cell line, BEAS-2B, in which MAP3K19 was knocked down using small interfering RNA. We also evaluated the involvement of MAP3K19 in the OVA-induced asthma murine model using Map3k19-deficient (MAP3K19
-/- ) mice. Transforming growth factor beta 1 (TGF-β1) and tumor necrosis factor-like weak inducer of apoptosis (TWEAK) induced the MAP3K19 messenger RNA (mRNA) expression in the BEAS-2B cells. The knockdown of MAP3K19 enhanced the reduction in E-cadherin mRNA and the production of regulated upon activation normal T cell express sequence (RANTES) via stimulation with TWEAK alone or with the combination of TGF-β1 and TWEAK. Furthermore, the expression of MAP3K19 mRNA was upregulated in both the lungs and tracheas of the mice in the OVA-induced asthma murine model. The MAP3K19-/- mice exhibited worsened eosinophilic inflammation and an increased production of RANTES in the airway epithelium compared with the wild-type mice. These findings indicate that MAP3K19 suppressed the TWEAK-stimulated airway epithelial response, including adhesion factor attenuation and RANTES production, and suppressed allergic airway inflammation in an asthma mouse model, suggesting that MAP3K19 regulates allergic airway inflammation in patients with asthma.- Published
- 2023
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6. A cell-based evaluation of human tyrosinase-mediated metabolic activation of leukoderma-inducing phenolic compounds.
- Author
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Nishimaki-Mogami T, Ito S, Cui H, Akiyama T, Tamehiro N, Adachi R, Wakamatsu K, Ikarashi Y, and Kondo K
- Subjects
- Humans, Activation, Metabolic, Phenols toxicity, Quinones analysis, Quinones chemistry, Quinones metabolism, Glutathione metabolism, Monophenol Monooxygenase metabolism, Hypopigmentation chemically induced
- Abstract
Background: Chemical leukoderma is a skin depigmentation disorder induced through contact with certain chemicals, most of which have a p-substituted phenol structure similar to the melanin precursor tyrosine. The tyrosinase-catalyzed oxidation of phenols to highly reactive o-quinone metabolites is a critical step in inducing leukoderma through the production of melanocyte-specific damage and immunological responses., Objective: Our aim was to find an effective method to evaluate the formation of o-quinone by human tyrosinase and subsequent cellular reactions., Methods: Human tyrosinase-expressing 293T cells were exposed to various phenolic compounds, after which the reactive o-quinones generated were identified as adducts of cellular thiols. We further examined whether the o-quinone formation induces reductions in cellular GSH or viability., Results: Among the chemicals tested, all 7 leukoderma-inducing phenols/catechol (rhododendrol, raspberry ketone, monobenzone, 4-tert-butylphenol, 4-tert-butylcatechol, 4-S-cysteaminylphenol and p-cresol) were oxidized to o-quinone metabolites and were detected as adducts of cellular glutathione and cysteine, leading to cellular glutathione reduction, whereas 2-S-cysteaminylphenol and 4-n-butylresorcinol were not. In vitro analysis using a soluble variant of human tyrosinase revealed a similar substrate-specificity. Some leukoderma-inducing phenols exhibited tyrosinase-dependent cytotoxicity in this cell model and in B16BL6 melanoma cells where tyrosinase expression was effectively modulated by siRNA knockdown., Conclusion: We developed a cell-based metabolite analytical method to detect human tyrosinase-catalyzed formation of o-quinone from phenolic compounds by analyzing their thiol-adducts. The detailed analysis of each metabolite was superior in sensitivity and specificity compared to cytotoxicity assays for detecting known leukoderma-inducing phenols, providing an effective strategy for safety evaluation of chemicals., Competing Interests: Conflict of interest The authors have no conflict of interest to declare., (Copyright © 2022 Japanese Society for Investigative Dermatology. Published by Elsevier B.V. All rights reserved.)
- Published
- 2022
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7. Bosutinib-induced lung injury: a report of two cases and literature review.
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Watanabe N, Takaku T, Tsukune Y, Yasuda H, Ochiai T, Yamada K, Nakazawa H, Hotta S, Nishimaki T, Takagi H, Takahashi K, Komatsu N, and Ando M
- Subjects
- Aniline Compounds pharmacology, Humans, Nitriles therapeutic use, Protein Kinase Inhibitors therapeutic use, Antineoplastic Agents therapeutic use, Leukemia, Myelogenous, Chronic, BCR-ABL Positive drug therapy, Lung Injury chemically induced, Lung Injury drug therapy, Quinolines adverse effects
- Abstract
The prognosis of patients with chronic myeloid leukemia (CML) has improved dramatically since the development of tyrosine kinase inhibitors (TKIs). Three second-generation TKIs, including bosutinib, are currently approved for treatment of CML, and show a faster and deeper clinical response than imatinib. Common adverse events (AEs) of bosutinib are diarrhea and hepatic toxicity; however, lung complications are rare. Here, we report two cases of bosutinib-induced severe lung injury, along with a literature review. The events of these cases occurred at early time points and severity was extremely high, requiring high-flow oxygen and steroid treatments. Compared to previously reported cases, the prevalence and severity of the damage may vary among different ethnicities. However, bosutinib-induced lung injury can cause life-threatening complications. In conclusion, patients treated with bosutinib should be monitored carefully to mitigate serious drug-induced lung injury., (© 2022. Japanese Society of Hematology.)
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- 2022
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8. Progressive Encephalomyelitis with Rigidity and Myoclonus and Myasthenia Gravis Comorbid Status with Thymoma.
- Author
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Ogawa T, Ogaki K, Daida K, Nishimaki T, Ando M, Kawajiri S, Wada R, Noda K, Hattori N, and Okuma Y
- Abstract
Competing Interests: This work was supported by the Japan Society for the Promotion of Science (JSPS) KAKENHI (Grant Number 19K17047) and the Brain/MINDS Beyond Program from AMED (Grant Number JP20dm0307024). The authors declare that there are no conflicts of interest relevant to this work.
- Published
- 2021
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9. Commentary: Progressive Encephalomyelitis with Rigidity and Myoclonus and Myasthenia Gravis Comorbid Status with Thymoma.
- Author
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Balint B, Ogawa T, Ogaki K, Daida K, Nishimaki T, Ando M, Kawajiri S, Wada R, Noda K, Hattori N, Okuma Y, and Barsottini O
- Abstract
Competing Interests: This work was supported by the Japan Society for the Promotion of Science KAKENHI (Grant 19K17047) and the Brain Mapping by Integrated Neurotechnology for Disease Studies (Brain/MINDS) Beyond Program from Japan Agency for Medical Research and Development (AMED) (Grant JP20dm0307024). B.B. and O.B. did not receive funding for this work and have no conflicts of interest to report.
- Published
- 2021
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10. The Oxidation of Equol by Tyrosinase Produces a Unique Di- ortho -Quinone: Possible Implications for Melanocyte Toxicity.
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Tanaka H, Ito S, Ojika M, Nishimaki-Mogami T, Kondo K, and Wakamatsu K
- Subjects
- Cysteine analogs & derivatives, Cysteine metabolism, Glutathione metabolism, HEK293 Cells, Humans, Monophenol Monooxygenase metabolism, Oxidants metabolism, Protein Binding, Quinones metabolism, Serum Albumin, Bovine metabolism, Equol metabolism, Melanocytes drug effects, Oxidants toxicity, Quinones toxicity
- Abstract
Equol (7-hydroxy-3-(4'-hydroxyphenyl)-chroman, EQ), one of the major intestinally derived metabolites of daidzein, the principal isoflavane found in soybeans and most soy foods, has recently attracted increased interest as a health-beneficial compound for estrogen-dependent diseases. However, based on its structure with two p -substituted phenols, this study aimed to examine whether EQ is a substrate for tyrosinase and whether it produces o -quinone metabolites that are highly cytotoxic to melanocyte. First, the tyrosinase-catalyzed oxidation of EQ was performed, which yielded three EQ-quinones. They were identified after being reduced to their corresponding catechols with NaBH
4 or L-ascorbic acid. The binding of the EQ-quinones to N -acetyl-L-cysteine (NAC), glutathione (GSH), and bovine serum albumin via their cysteine residues was then examined. NAC and GSH afforded two mono-adducts and one di-adduct, which were identified by NMR and MS analysis. It was also found that EQ was oxidized to EQ-di-quinone in cells expressing human tyrosinase. Finally, it was confirmed that the EQ-oligomer, the EQ oxidation product, exerted potent pro-oxidant activity by oxidizing GSH to the oxidized GSSG and concomitantly producing H2 O2 . These results suggest that EQ-quinones could be cytotoxic to melanocytes due to their binding to cellular proteins.- Published
- 2021
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11. Statins repress needle-like carbon nanotube- or cholesterol crystal-stimulated IL-1β production by inhibiting the uptake of crystals by macrophages.
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Cui H, Soga K, Tamehiro N, Adachi R, Hachisuka A, Hirose A, Kondo K, and Nishimaki-Mogami T
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- Animals, Crystallization methods, Female, Humans, Interleukin-1beta metabolism, Macrophages metabolism, Mice, Mice, Inbred BALB C, THP-1 Cells, Cholesterol toxicity, Hydroxymethylglutaryl-CoA Reductase Inhibitors pharmacology, Interleukin-1beta antagonists & inhibitors, Macrophages drug effects, Nanotubes, Carbon toxicity
- Abstract
Statins are 3-hydroxy-3-methylglutaryl-CoA reductase inhibitors that lower atherogenic LDL-cholesterol levels. Statins exert clinically relevant anti-inflammatory effects; however, the underlying molecular mechanism remains unclear. Studies have shown that endogenous and exogenous pathogenic crystals, such as cholesterol and monosodium urate (MSU), and needle-like nanomaterials, such as multi-wall carbon nanotubes (MWCNT), induce the production of IL-1β and play a critical role in the development of crystal-associated sterile inflammatory pathologies. In this study, we evaluated the effect of statins on crystal-induced IL-1β production in macrophages. We found that various statins, including pitavastatin, atorvastatin, fluvastatin, and lovastatin, but not squalene synthase inhibitor, repressed IL-1β release upon MWCNT stimulation. In addition, IL-1β production induced by cholesterol crystals and MSU crystals, but not by ATP or nigericin, was diminished. MWCNT-stimulated IL-1β release was dependent on the expression of NLRP3, but not AIM2, NLRC4, or MEFV. Statin-induced repression was accompanied by reduced levels of mature caspase-1 and decreased uptake of MWCNT into cells. Supplementation of mevalonate, geranylgeranyl pyrophosphate, or farnesyl pyrophosphate prevented the reduction in IL-1β release, suggesting a crucial role of protein prenylation, but not cholesterol synthesis. The statin-induced repression of MWCNT-elicited IL-1β release was observed in THP-1-derived and mouse peritoneal macrophages, but not in bone marrow-derived macrophages where statins act in synergy with lipopolysaccharide to enhance the expression of IL-1β precursor protein. In summary, we describe a novel anti-inflammatory mechanism through which statins repress mature IL-1β release induced by pathogenic crystals and nanoneedles by inhibiting the internalization of crystals by macrophages., (Copyright © 2021 Elsevier Inc. All rights reserved.)
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- 2021
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12. P*R*O*P: a web application to perform phylogenetic analysis considering the effect of gaps.
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Nishimaki T and Sato K
- Subjects
- Internet, Evolution, Molecular, Phylogeny, Software
- Abstract
Background: Phylogenetic analysis strongly depends on evolutionary models. Most evolutionary models for estimating genetic differences and phylogenetic relationships do not treat gap sites in the alignment of sequences. Appropriately incorporating evolutionary information of sites containing insertions and deletions into genetic difference measures will be improve the accuracy of phylogenetic estimates., Results: We introduced a new measure for estimating genetic differences, and presented P*R*O*P, a web application for performing phylogenetic analysis based on genetic difference considering the effect of gaps. As an example of phylogenetic analysis using P*R*O*P, we used complete p53 amino acid sequences of 31 organisms and illustrated that the genetic differences with and without information on sites containing gaps result in trees with different topologies., Conclusions: P*R*O*P is available at https://www.rs.tus.ac.jp/bioinformatics/prop and the user can perform phylogenetic analysis by uploading sequence data on the website. The most distinctive feature of P*R*O*P is its genetic difference that is estimated without eliminating gap sites for alignment sequences, which helps users detect meaningful difference in an evolutionary process. The source code is available in GitHub: https://github.com/TUS-Satolab/PROP .
- Published
- 2021
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13. Identification of potent farnesoid X receptor (FXR) antagonist showing favorable PK profile and distribution toward target tissues: Comprehensive understanding of structure-activity relationship of FXR antagonists.
- Author
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Teno N, Yamashita Y, Masuda A, Iguchi Y, Oda K, Fujimori K, Hiramoto T, Nishimaki-Mogami T, Une M, and Gohda K
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- Administration, Intravenous, Administration, Oral, Animals, Anti-Obesity Agents administration & dosage, Anti-Obesity Agents chemical synthesis, Anti-Obesity Agents pharmacokinetics, Benzimidazoles administration & dosage, Benzimidazoles chemical synthesis, Hypoglycemic Agents administration & dosage, Hypoglycemic Agents chemical synthesis, Hypoglycemic Agents pharmacokinetics, Ileum metabolism, Liver metabolism, Male, Molecular Structure, Rats, Sprague-Dawley, Structure-Activity Relationship, Benzimidazoles pharmacokinetics, Receptors, Cytoplasmic and Nuclear antagonists & inhibitors
- Abstract
Antagonizing transcriptional activity of farnesoid X receptor (FXR) in the intestine has been reported as an effective means for the treatment of nonalcoholic fatty liver disease, type 2 diabetes and obesity. We describe herein that the building blocks necessary to maintain the antagonism of our chemotype were investigated in order to modulate in vivo pharmacokinetic behavior and the tissue distribution without blunting the activity against FXR. A comprehensive understanding of the structure-activity relationship led to analog 30, which is superior to 12 in terms of its pharmacokinetic profiles by oral administration and its tissue distribution toward target tissues (liver and ileum) in rats while preserving the in vitro activity of 12 against FXR. Thus, 30 should be a candidate compound to investigate the effects of inhibiting FXR activity while simultaneously improving the outcome of nonalcoholic fatty liver disease, type 2 diabetes and obesity., (Copyright © 2019 Elsevier Ltd. All rights reserved.)
- Published
- 2019
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14. Identification of 2-(2'-fluoro-[1,1'-biphenyl]-2-yl)acetamide as a Sodium Valproate-like broad spectrum anti-epileptic drug candidate.
- Author
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Tanaka T, Yajima N, Kiyoshi T, Miura Y, Inoue Y, Nishimaki T, and Iwama S
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- Acetamides chemical synthesis, Acetamides chemistry, Amygdala pathology, Animals, Anticonvulsants chemical synthesis, Anticonvulsants chemistry, Biphenyl Compounds chemical synthesis, Biphenyl Compounds chemistry, Dose-Response Relationship, Drug, Epilepsy pathology, Kindling, Neurologic pathology, Molecular Structure, Rats, Structure-Activity Relationship, Acetamides therapeutic use, Amygdala drug effects, Anticonvulsants therapeutic use, Biphenyl Compounds therapeutic use, Epilepsy drug therapy, Kindling, Neurologic drug effects
- Abstract
By further optimizing compound A [2'-fluoro-N-methyl-[1,1'-biphenyl]-2-sulfonamide], we identified DSP-0565 [2-(2'-fluoro-[1,1'-biphenyl]-2-yl)acetamide, 17a] as a strong, broad-spectrum anti-epileptic drug (AED) candidate. Our efforts mainly focused on finding an alternative polar group for the sulfonamide in order to improve ADME profile of compound A including good metabolic stability and no reactive metabolic production. This led to the identification of biphenyl acetamide as a new scaffold for development of broad-spectrum AED candidates. DSP-0565 showed anti-convulsant activity in various models (scPTZ, MES, 6 Hz and amygdala kindling) with good safety margin, and was therefore selected as a clinical candidate., (Copyright © 2018. Published by Elsevier Ltd.)
- Published
- 2019
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15. An Extension of the Kimura Two-Parameter Model to the Natural Evolutionary Process.
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Nishimaki T and Sato K
- Subjects
- Algorithms, DNA Barcoding, Taxonomic methods, DNA, Plant genetics, DNA, Ribosomal Spacer genetics, INDEL Mutation genetics, Models, Genetic, Mutation Rate, Phylogeny, Physalis genetics, Evolution, Molecular, Models, Statistical
- Abstract
Accurate estimates of genetic difference are required for research in evolutionary biology. Here we extend the Kimura two-parameter (K2P) model by considering gaps (insertions and/or deletions) and introduce a new measure for estimating genetic difference between two nucleotide sequences in terms of nucleotide changes that have occurred during the evolutionary process. Using the nuclear ribosomal DNA internal transcribed spacer 2 region from the genus Physalis, we demonstrate that species identification and phylogenetic studies strongly depend on evolutionary models. It is especially noteworthy that the use of different models affects the degree of overlap between intraspecific and interspecific genetic differences. We observe that the percentage of interspecific sequence pairs with values less than the maximum intraspecific genetic difference is 43.2% for the K2P model which is calculated by removing gap sites across all sequences, 22.7% for the K2P model which is calculated by removing gap sites for sequence pairs, and 16.9% for our model which is calculated without removing gap sites. Additionally, the numbers of sequence pairs with interspecific genetic differences of zero are 50 for the K2P model and 29 for our model. The genetic difference measure based on the K2P model, compared to our model, overestimates 21 sequence pairs that are not originally identical. These results indicate the importance of estimating genetic differences under the model of sequence evolution that includes insertions and deletions in addition to substitutions.
- Published
- 2019
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16. Positive phototropism is accelerated in Biomphalaria glabrata snails by infection with Schistosoma mansoni.
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Maeda H, Hatta T, Tsubokawa D, Mikami F, Nishimaki T, Nakamura T, Anisuzzaman, Matsubayashi M, Ogawa M, da Costa CP, and Tsuji N
- Subjects
- Animals, Disease Vectors, Light, Schistosoma mansoni, Water parasitology, Behavior, Animal, Biomphalaria parasitology, Biomphalaria physiology, Host-Parasite Interactions, Phototropism, Schistosomiasis mansoni veterinary
- Abstract
Parasite-induced behavioral changes in their hosts favor to complete the lifecycle of parasites. Schistosome infection is also known to cause physiological changes in infected freshwater snail intermediate hosts. Here, we report, a novel phenomenon in which Schistosoma mansoni, a highly debilitating worm affecting millions of people worldwide, alters the phototropic behavior of Biomphalaria glabrata, the vector snail. S. mansoni-infection enhanced positive phototropism of vector snails and infected snails spent significantly more time in light. Possibly, these behavioral changes help the parasite to be released efficiently from the infected intermediate hosts, and to infect mammalian hosts., (Copyright © 2018. Published by Elsevier B.V.)
- Published
- 2018
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17. Abnormal nuclear morphology is independent of longevity in a zmpste24-deficient fish model of Hutchinson-Gilford progeria syndrome (HGPS).
- Author
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Tonoyama Y, Shinya M, Toyoda A, Kitano T, Oga A, Nishimaki T, Katsumura T, Oota H, Wan MT, Yip BWP, Helen MOL, Chisada S, Deguchi T, Au DWT, Naruse K, Kamei Y, and Taniguchi Y
- Subjects
- Animal Fins enzymology, Animal Fins pathology, Animal Fins radiation effects, Animals, Animals, Genetically Modified, Cell Nucleus enzymology, Cell Nucleus radiation effects, Cell Nucleus Shape radiation effects, Cells, Cultured, Codon, Nonsense, Female, Fish Proteins chemistry, Fish Proteins genetics, Fish Proteins metabolism, Gene Knockout Techniques, Green Fluorescent Proteins chemistry, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Heterozygote, Male, Membrane Proteins genetics, Membrane Proteins metabolism, Metalloendopeptidases genetics, Metalloendopeptidases metabolism, Oryzias metabolism, Progeria enzymology, Progeria genetics, Radiation Tolerance, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Survival Analysis, Telomere Shortening radiation effects, Cell Nucleus pathology, Disease Models, Animal, Fish Proteins deficiency, Membrane Proteins deficiency, Metalloendopeptidases deficiency, Oryzias genetics, Progeria pathology
- Abstract
Lamin is an intermediate protein underlying the nuclear envelope and it plays a key role in maintaining the integrity of the nucleus. A defect in the processing of its precursor by a metalloprotease, ZMPSTE24, results in the accumulation of farnesylated prelamin in the nucleus and causes various diseases, including Hutchinson-Gilford progeria syndrome (HGPS). However, the role of lamin processing is unclear in fish species. Here, we generated zmpste24-deficient medaka and evaluated their phenotype. Unlike humans and mice, homozygous mutants did not show growth defects or lifespan shortening, despite lamin precursor accumulation. Gonadosomatic indices, blood glucose levels, and regenerative capacity of fins were similar in 1-year-old mutants and their wild-type (WT) siblings. Histological examination showed that the muscles, subcutaneous fat tissues, and gonads were normal in the mutants at the age of 1 year. However, the mutants showed hypersensitivity to X-ray irradiation, although p53target genes, p21 and mdm2, were induced 6 h after irradiation. Immunostaining of primary cultured cells from caudal fins and visualization of nuclei using H2B-GFP fusion proteins revealed an abnormal nuclear shape in the mutants both in vitro and in vivo. The telomere lengths were significantly shorter in the mutants compared to WT. Taken together, these results suggest that zmpste24-deficient medaka phenocopied HGPS only partially and that abnormal nuclear morphology and lifespan shortening are two independent events in vertebrates., (Copyright © 2018 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2018
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18. Development and Evaluation of an Enzyme-Linked Immunosorbent Assay Using a Nonpoisonous Extraction System for the Determination of Crustacean Protein in Processed Foods.
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Koizumi D, Shirota K, Oda H, Adachi R, Sakai S, Akiyama H, Nishimaki-Mogami T, and Teshima R
- Subjects
- Animals, Arthropod Proteins isolation & purification, Calibration, Chickens, Fishes, Fruit and Vegetable Juices analysis, Limit of Detection, Meat Products analysis, Penaeidae chemistry, Reproducibility of Results, Sodium Dodecyl Sulfate chemistry, Solid Phase Extraction methods, Sulfites chemistry, Arthropod Proteins analysis, Enzyme-Linked Immunosorbent Assay methods, Food Analysis
- Abstract
Crustacean proteins are food allergens that cause severe allergic reactions in patients with food allergies; therefore, the identification of crustaceans such as shrimp, crab, and lobster as ingredients in processed food products is mandatory in Japan. We previously developed and validated an ELISA method coupled with an extraction process using the surfactant sodium dodecyl sulfate and the reductant 2-mercaptoethanol (2-ME) to quantify crustacean protein. However, 2-ME was designated as poisonous in Japan in 2008. Therefore, in this study, we developed and evaluated an ELISA method for detecting and quantifying crustacean protein that uses sodium sulfite (Na2SO3) in place of 2-ME for extraction. The proposed ELISA method showed high sensitivity, with an LOQ of 0.66 μg protein/g food sample. Furthermore, the proposed method showed high specificity for the Decapoda order within the subphylum Crustacea, with recoveries ranging from 83.8 to 100.8% for model processed foods, as well as high reproducibility (intra- and interassay CVs of ≤8.2%) and high correlation with our previously validated ELISA method for processed foods (correlation coefficient of 0.996). The proposed ELISA method does not require the use of poisonous reagents, provides acceptable accuracy, and is useful for the routine monitoring of food products.
- Published
- 2018
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19. Spatial relationships of the bronchial arteries to the left recurrent laryngeal nerve in the sub-aortic arch area.
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Hayasaka K, Ishida H, Kimura R, and Nishimaki T
- Subjects
- Adult, Aged, Aged, 80 and over, Cadaver, Esophageal Neoplasms surgery, Esophagectomy, Female, Humans, Lymph Node Excision, Male, Middle Aged, Aorta, Thoracic innervation, Bronchial Arteries anatomy & histology, Recurrent Laryngeal Nerve anatomy & histology
- Abstract
Purpose: To safely perform lymphadenectomy in the sub-aortic arch area during esophagectomy for esophageal cancer, we investigated the spatial relationships between the bronchial arteries (BAs) and the left recurrent laryngeal nerve (LRLN)., Methods: For this macro-anatomical study, 72 cadavers were used., Results: Of the 195 dissected BAs, 15 (7.7%) arteries ran dorsally across the LRLN. Such a running pattern of the BA was found in 15 (20.8%) of the 72 cadavers. Fourteen (93.3%) of the 15 arteries ran anteriorly along the left side of the esophagus, and 13 (86.7%) passed further to the lateral side of the left main bronchus to reach the ventral surface of the tracheobronchus; we named this running pattern "Type III". Of the 51 arteries with the Type III pattern, 25.5% ran across the dorsal side of the LRLN., Conclusion: Approximately 20% of the cadavers had BAs running dorsally to the LRLN in the sub-aortic arch area. Most of these arteries had the Type III pattern. One-quarter of the BAs with the Type III pattern showed this running pattern. Care must be practiced to safely perform lymphadenectomy for esophageal cancer in patients with Type III BAs.
- Published
- 2018
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20. Nonacidic Chemotype Possessing N -Acylated Piperidine Moiety as Potent Farnesoid X Receptor (FXR) Antagonists.
- Author
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Teno N, Yamashita Y, Iguchi Y, Fujimori K, Une M, Nishimaki-Mogami T, Hiramoto T, and Gohda K
- Abstract
Farnesoid X receptor (FXR) plays a major role in the control of cholesterol metabolism. Antagonizing transcriptional activity of FXR is an effective means to treat the relevant metabolic syndrome. Some of antagonists so far have the charged functions; however, they may negatively affect the pharmacokinetics. We describe herein a structure-activity relationship (SAR) exploration of nonacidic FXR antagonist 6 focusing on two regions in the structure and biological evaluation of nonacidic 10 with the characteristic N -acylated piperidine group obtained from SAR studies. As the robust affinity to FXR is feasible with our nonacidic analogue, 10 is among the most promising candidates for in vivo testing., Competing Interests: The authors declare no competing financial interest.
- Published
- 2018
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21. Use of indocyanine green fluorescence imaging to determine the area of bowel resection in non-occlusive mesenteric ischemia: A case report.
- Author
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Nakagawa Y, Kobayashi K, Kuwabara S, Shibuya H, and Nishimaki T
- Abstract
Introduction: Non-occlusive mesenteric ischemia (NOMI) is a type of acute intestinal ischemia, and its associated mortality is very high. In laparotomy of NOMI, we often have difficulty determining the area of bowel resection. We herein describe a case in which we detected the area of bowel resection using indocyanine green (ICG) fluorescence imaging., Presentation of the Case: An 89-year-old man diagnosed as having advanced gastric cancer underwent distal gastrectomy. On the night of postoperative day 4, he strongly complained of distention of the abdomen. The laboratory data indicated severe metabolic acidosis and dehydration. The abdominal computed tomography scan showed a dilated small bowel, but there were no specific signs suggestive of bowel necrosis. We suspected NOMI and decided to perform emergency laparotomy because we could not exclude the possibility of bowel necrosis. During the operation, we could not detect the necrotic bowel macroscopically. After injecting 2.5 mg of ICG, the ischemic area of the bowel became visible as a region with poor fluorescence emission using the Photodynamic Eye™ (Hamamatsu Photonics K.K.). We resected the ischemic bowel and performed anastomosis. We confirmed that he was alive at 4 months after the operation of NOMI., Conclusion: Intraoperative ICG fluorescence imaging makes it possible to detect necrotic intestine that cannot be found with the naked eye. By using this method, planned reoperation to find any newly developed necrotic intestine might be unnecessary. Intraoperative ICG fluorescence imaging is useful for defining the area of ischemic bowel in a patient with NOMI., (Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2018
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22. Molecular phylogenetic analysis of new Entoloma rhodopolium-related species in Japan and its identification method using PCR-RFLP.
- Author
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Kondo K, Nakamura K, Ishigaki T, Sakata K, Obitsu S, Noguchi A, Fukuda N, Nagasawa E, Teshima R, and Nishimaki-Mogami T
- Subjects
- Agaricales classification, Agaricales ultrastructure, Europe, Foodborne Diseases microbiology, Humans, Japan, Phylogeny, Species Specificity, Agaricales genetics, DNA, Fungal genetics, Polymorphism, Restriction Fragment Length
- Abstract
Poisonous Entoloma rhodopolium and other similar species including edible E. sarcopum are morphologically diverse. People mistake poisonous species for edible species. Classification and the detection method of these species need to be defined. The morphological and phylogenetic studies have been reported in northern Europe. In Japan, the genetic study remains unsolved. Thus, phylogenetic analysis of E. rhodopolium was conducted using ITS and RPB2 sequences, and the result was compared with that of European species. Japanese E. rhodopolium was classified into three clades, none of which belonged to the true European E. rhodopolium and other known species. Three species were defined as new species. Entoloma rhodopolium clade-I (named E. lacus) was genetically close to but morphologically separated from E. majaloides. Clade-II (E. subrhodopolium) was classified to the same group as E. sinuatum and E. subsinuatum, but distinct from these species. Clade-III was segregated from known Entoloma species including E. lupinum, and named E. pseudorhodopolium. Based on the classification, a simple identification method PCR-RFLP was developed to discriminate between poisonous species and edible E. sarcopum, which is very similar in morphology. The study can help to clarify the taxonomy of complex E. rhodopolium-related species, and to prevent food poisoning.
- Published
- 2017
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23. Loss of zinc finger MYND-type containing 10 (zmynd10) affects cilia integrity and axonemal localization of dynein arms, resulting in ciliary dysmotility, polycystic kidney and scoliosis in medaka (Oryzias latipes).
- Author
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Kobayashi D, Asano-Hoshino A, Nakakura T, Nishimaki T, Ansai S, Kinoshita M, Ogawa M, Hagiwara H, and Yokoyama T
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- Amino Acid Sequence, Animals, Axoneme drug effects, Base Sequence, Body Patterning drug effects, Body Patterning genetics, Cilia drug effects, Embryo, Nonmammalian drug effects, Embryo, Nonmammalian metabolism, Epistasis, Genetic drug effects, Gene Expression Regulation, Developmental drug effects, Male, Morpholinos pharmacology, Movement, Oryzias embryology, Oryzias genetics, Phenotype, Polycystic Kidney Diseases pathology, RNA, Messenger genetics, RNA, Messenger metabolism, Scoliosis pathology, Spermatozoa metabolism, Tumor Suppressor Proteins chemistry, Tumor Suppressor Proteins genetics, Tumor Suppressor Proteins metabolism, Zinc Fingers, Axoneme metabolism, Cilia metabolism, Dyneins metabolism, Oryzias metabolism, Polycystic Kidney Diseases metabolism, Scoliosis metabolism
- Abstract
Cilia and flagella are hair-like organelles that project from the cell surface and play important roles in motility and sensory perception. Motility defects in cilia and flagella lead to primary ciliary dyskinesia (PCD), a rare human disease. Recently zinc finger MYND-type containing 10 (ZMYND10) was identified in humans as a PCD-associated gene. In this study, we use medaka fish as a model to characterize the precise functions of zmynd10. In medaka, zmynd10 is exclusively expressed in cells with motile cilia. Embryos with zmynd10 Morpholino knockdown exhibited a left-right (LR) defect associated with loss of motility in Kupffer's vesicle (KV) cilia. This immotility was caused by loss of the outer dynein arms, which is a characteristic ultrastructural phenotype in PCD. In addition, KV cilia in zmynd10 knockdown embryos had a swollen and wavy morphology. Together, these results suggest that zmynd10 is a multi-functional protein that has independent roles in axonemal localization of dynein arms and in formation and/or maintenance of cilia. The C-terminal region of zmynd10 has a MYND-type zinc finger domain (zf-MYND) that is important for its function. Our rescue experiment showed that the zmynd10-ΔC truncated protein, which lacks zf-MYND, was still partially functional, suggesting that zmynd10 has another functional domain besides zf-MYND. To analyze the later stages of development, we generated a zmynd10 knockout mutant using transcription activator-like effector nuclease (TALEN) technology. Adult mutants exhibited sperm dysmotility, scoliosis and progressive polycystic kidney., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
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24. A new anatomical classification of the bronchial arteries based on the spatial relationships to the esophagus and the tracheobronchus.
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Hayasaka K, Ishida H, Kimura R, and Nishimaki T
- Subjects
- Adult, Aged, Aged, 80 and over, Bronchi blood supply, Bronchial Arteries diagnostic imaging, Cadaver, Esophageal Neoplasms blood supply, Esophageal Neoplasms surgery, Esophagectomy, Esophagus blood supply, Female, Humans, Lymph Node Excision, Male, Middle Aged, Multidetector Computed Tomography, Trachea blood supply, Bronchi anatomy & histology, Bronchial Arteries anatomy & histology, Esophagus anatomy & histology, Trachea anatomy & histology
- Abstract
Purpose: To reveal the patterns of the mediastinal course of the bronchial arteries (BAs)., Methods: The BAs were dissected to determine the positional relationships of their mediastinal courses with the tracheobronchus and the esophagus in 72 adult cadavers., Results: The mediastinal courses of the 227 BAs found in this study were classified into 4 types. There were 61 and 163 BAs passing the right side (Type I) and the left side (Type II reaching dorsal surface (n = 98), or Type III reaching ventral surface (n = 65) of the tracheobronchus) of the esophagus, respectively. Three BAs originated from the subclavian artery (Type IV). All Type I BAs were right BAs, whereas 91.8% of the Type II BAs were left BAs. However, 43.1 and 56.9% of the Type III BAs were the right and left BAs, respectively., Conclusion: The classification of the mediastinal course of the BAs determined by the spatial relationships to the tracheobronchus and the esophagus may be clinically useful, because each category of this classification can be determined during esophagectomy and indicates whether the BA is a right or left BA.
- Published
- 2017
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25. A case of HER2-positive male occult breast carcinoma with skin and lymph node metastases that exhibited complete response to trastuzumab monotherapy.
- Author
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Kuninaka K, Takahashi R, Nakagawa Y, and Nishimaki T
- Abstract
Metastatic male occult HER2-positive breast cancer can be successfully treated with trastuzumab monotherapy.
- Published
- 2017
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26. Discovery and optimization of benzimidazole derivatives as a novel chemotype of farnesoid X receptor (FXR) antagonists.
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Teno N, Iguchi Y, Yamashita Y, Mori N, Une M, Nishimaki-Mogami T, and Gohda K
- Subjects
- Benzimidazoles chemistry, Cell Line, Tumor, Cholesterol 7-alpha-Hydroxylase genetics, Cholesterol 7-alpha-Hydroxylase metabolism, Fluorescence Resonance Energy Transfer, Humans, Proton Magnetic Resonance Spectroscopy, RNA, Messenger genetics, Structure-Activity Relationship, Benzimidazoles pharmacology, Drug Discovery, Receptors, Cytoplasmic and Nuclear antagonists & inhibitors
- Abstract
We describe here a novel chemotype with substituted benzimidazole scaffold for nonsteroidal farnesoid X receptor (FXR) antagonists starting from the identification of a screening hit, BB-4. Structure diversity in four regions A-D of BB-4 or 1 is discussed. In particular, regions A and C had an effect on an antagonism against FXR as demonstrated by the derivatives represented by 7 and 15, respectively. Thus, compound 19 arising from the combination of regions A and C underscored an important fact on antagonism against FXR, also showing the reduced small heterodimer partner and the increased cholesterol 7α-hydroxylase expression levels., (Copyright © 2017 Elsevier Ltd. All rights reserved.)
- Published
- 2017
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27. Whole genome sequence analysis of unidentified genetically modified papaya for development of a specific detection method.
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Nakamura K, Kondo K, Akiyama H, Ishigaki T, Noguchi A, Katsumata H, Takasaki K, Futo S, Sakata K, Fukuda N, Mano J, Kitta K, Tanaka H, Akashi R, and Nishimaki-Mogami T
- Subjects
- Carica chemistry, Fruit chemistry, Genomics, Carica genetics, Fruit genetics, Plants, Genetically Modified genetics, Real-Time Polymerase Chain Reaction methods, Sequence Analysis methods
- Abstract
Identification of transgenic sequences in an unknown genetically modified (GM) papaya (Carica papaya L.) by whole genome sequence analysis was demonstrated. Whole genome sequence data were generated for a GM-positive fresh papaya fruit commodity detected in monitoring using real-time polymerase chain reaction (PCR). The sequences obtained were mapped against an open database for papaya genome sequence. Transgenic construct- and event-specific sequences were identified as a GM papaya developed to resist infection from a Papaya ringspot virus. Based on the transgenic sequences, a specific real-time PCR detection method for GM papaya applicable to various food commodities was developed. Whole genome sequence analysis enabled identifying unknown transgenic construct- and event-specific sequences in GM papaya and development of a reliable method for detecting them in papaya food commodities., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2016
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28. Surgical treatment of liver metastasis of gastric cancer: a retrospective multicenter cohort study (KSCC1302).
- Author
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Oki E, Tokunaga S, Emi Y, Kusumoto T, Yamamoto M, Fukuzawa K, Takahashi I, Ishigami S, Tsuji A, Higashi H, Nakamura T, Saeki H, Shirabe K, Kakeji Y, Sakai K, Baba H, Nishimaki T, Natsugoe S, and Maehara Y
- Subjects
- Aged, Female, Follow-Up Studies, Humans, Liver Neoplasms secondary, Lymphatic Metastasis, Male, Neoplasm Invasiveness, Neoplasm Staging, Prognosis, Retrospective Studies, Stomach Neoplasms pathology, Survival Rate, Catheter Ablation methods, Gastrectomy methods, Hepatectomy methods, Liver Neoplasms surgery, Stomach Neoplasms surgery
- Abstract
Background: The necessity of surgical treatment of liver metastases of gastric cancer is still controversial., Patients and Methods: We conducted a multicenter retrospective cohort study of liver-limited metastasis of gastric cancer treated surgically between 2000 and 2010. In this study, 103 patients were registered, with nine patients excluded from the analysis as they did not meet the eligibility criteria., Results: Of the 94 patients, 69 underwent surgical resection, 11 underwent surgical resection combined with radiofrequency ablation or microwave coagulation therapy for small or deep tumors, and 14 underwent radiofrequency ablation or microwave coagulation therapy only. Synchronous and metachronous metastases were found in 37 and 57 patients, respectively. The 3- and 5-year overall survival rates of all the patients were 51.4 and 42.3 %, respectively. The 3- and 5-year relapse-free survival rates were 29.2 and 27.7 %, respectively. No significant difference in prognosis was observed between the patients who underwent surgical resection and those who underwent ablation therapy. The patients with hepatic solitary lesions and low-grade lymph node metastases of primary gastric cancer had significantly better overall survival and relapse-free survival., Conclusions: To our knowledge, this study is the largest series and first multicenter cohort study of liver-limited metastasis of gastric cancer. The study indicated that patients with a single liver metastasis with a grade lower than N2 lymph node metastasis of the primary lesion are the best candidates for liver resection.
- Published
- 2016
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29. In vivo 3D analysis of systemic effects after local heavy-ion beam irradiation in an animal model.
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Nagata K, Hashimoto C, Watanabe-Asaka T, Itoh K, Yasuda T, Ohta K, Oonishi H, Igarashi K, Suzuki M, Funayama T, Kobayashi Y, Nishimaki T, Katsumura T, Oota H, Ogawa M, Oga A, Ikemoto K, Itoh H, Kutsuna N, Oda S, and Mitani H
- Subjects
- Animals, Kidney metabolism, Myocardium metabolism, Radiation Injuries, Experimental metabolism, Heavy Ion Radiotherapy adverse effects, Kidney pathology, Myocardium pathology, Oryzias metabolism, Radiation Injuries, Experimental pathology
- Abstract
Radiotherapy is widely used in cancer treatment. In addition to inducing effects in the irradiated area, irradiation may induce effects on tissues close to and distant from the irradiated area. Japanese medaka, Oryzias latipes, is a small teleost fish and a model organism for evaluating the environmental effects of radiation. In this study, we applied low-energy carbon-ion (26.7 MeV/u) irradiation to adult medaka to a depth of approximately 2.2 mm from the body surface using an irradiation system at the National Institutes for Quantum and Radiological Science and Technology. We histologically evaluated the systemic alterations induced by irradiation using serial sections of the whole body, and conducted a heart rate analysis. Tissues from the irradiated side showed signs of serious injury that corresponded with the radiation dose. A 3D reconstruction analysis of the kidney sections showed reductions in the kidney volume and blood cell mass along the irradiated area, reflecting the precise localization of the injuries caused by carbon-beam irradiation. Capillary aneurysms were observed in the gill in both ventrally and dorsally irradiated fish, suggesting systemic irradiation effects. The present study provides an in vivo model for further investigation of the effects of irradiation beyond the locally irradiated area.
- Published
- 2016
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30. Transgenic medaka that overexpress growth hormone have a skin color that does not indicate the activation or inhibition of somatolactin-α signal.
- Author
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Komine R, Nishimaki T, Kimura T, Oota H, Naruse K, Homma N, and Fukamachi S
- Subjects
- Animals, Animals, Genetically Modified, Female, Male, Fish Proteins metabolism, Glycoproteins metabolism, Growth Hormone genetics, Oryzias genetics, Pituitary Hormones metabolism, Signal Transduction, Skin Pigmentation genetics
- Abstract
Teleosts have two paralogous growth-hormone receptors (GHRs). In vitro studies demonstrated that both receptors bind to and transmit the signal of the growth hormone (GH). However, one of the GHRs (GHR1) was shown to bind more strongly to somatolactin-α (SLα), a fish-specific peptide hormone that is closely related to GH, and is, therefore, termed somatolactin receptor (SLR). In this study, we questioned whether the dual binding of GHR1/SLR causes a crosstalk (reciprocal activation or inhibition) between GH and SLα signals in vivo. For this purpose, we newly established a transgenic medaka that overexpresses GH (Actb-GH:GFP) and assessed its phenotype. The body weight of these transgenic medaka is about twice that of wild-type fish, showing that functional GH was successfully overexpressed in Actb-GH:GFP fish. The transgenic medaka, especially female fish, showed severe infertility, which was a common side effect in GH transgenesis. The skin color, which reflects the effects of SLα most conspicuously in medaka, was similar to that of neither the SLα-overexpressing nor the SLα-deficient medaka, indicating that GH overexpression does not enhance or suppress the SLα signal. We also verified that a transgenic medaka that overexpressed SLα grew and reproduced normally. Therefore, regardless of the in vitro binding relationships, the GH and SLα signals seem not to crosstalk significantly in vivo even when these hormones are overexpressed., (Copyright © 2016 Elsevier B.V. All rights reserved.)
- Published
- 2016
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31. Development and Interlaboratory Validation of a Simple Screening Method for Genetically Modified Maize Using a ΔΔC(q)-Based Multiplex Real-Time PCR Assay.
- Author
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Noguchi A, Nakamura K, Sakata K, Sato-Fukuda N, Ishigaki T, Mano J, Takabatake R, Kitta K, Teshima R, Kondo K, and Nishimaki-Mogami T
- Subjects
- Calibration, Food, Genetically Modified, Japan, DNA, Plant analysis, DNA, Plant genetics, Plants, Genetically Modified genetics, Real-Time Polymerase Chain Reaction methods, Zea mays genetics
- Abstract
A number of genetically modified (GM) maize events have been developed and approved worldwide for commercial cultivation. A screening method is needed to monitor GM maize approved for commercialization in countries that mandate the labeling of foods containing a specified threshold level of GM crops. In Japan, a screening method has been implemented to monitor approved GM maize since 2001. However, the screening method currently used in Japan is time-consuming and requires generation of a calibration curve and experimental conversion factor (C(f)) value. We developed a simple screening method that avoids the need for a calibration curve and C(f) value. In this method, ΔC(q) values between the target sequences and the endogenous gene are calculated using multiplex real-time PCR, and the ΔΔC(q) value between the analytical and control samples is used as the criterion for determining analytical samples in which the GM organism content is below the threshold level for labeling of GM crops. An interlaboratory study indicated that the method is applicable independently with at least two models of PCR instruments used in this study.
- Published
- 2016
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32. Differential analyses of major allergen proteins in wild-type rice and rice producing a fragment of anti-rotavirus antibody.
- Author
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Yuki Y, Kurokawa S, Kozuka-Hata H, Tokuhara D, Mejima M, Kuroda M, Oyama M, Nishimaki-Mogami T, Teshima R, and Kiyono H
- Subjects
- Allergens genetics, Antibodies, Viral genetics, Antibodies, Viral immunology, Antigens, Plant, Gene Expression Regulation, Plant, Immunoglobulin Fragments genetics, Immunoglobulin Fragments immunology, Immunoglobulin Heavy Chains genetics, Immunoglobulin Heavy Chains immunology, Mass Spectrometry, Microscopy, Immunoelectron, Oryza genetics, Oryza immunology, Plant Proteins genetics, Plants, Genetically Modified genetics, Plants, Genetically Modified immunology, Proteomics methods, Risk Assessment, Rotavirus genetics, Rotavirus Vaccines genetics, Rotavirus Vaccines immunology, Two-Dimensional Difference Gel Electrophoresis, Allergens immunology, Antibodies, Viral biosynthesis, Immunoglobulin Fragments biosynthesis, Immunoglobulin Heavy Chains biosynthesis, Oryza metabolism, Plant Proteins immunology, Plants, Genetically Modified metabolism, Rotavirus immunology, Rotavirus Vaccines biosynthesis
- Abstract
To develop oral antibody therapy against rotavirus infection, we previously produced a recombinant fragment of llama heavy-chain antibody to rotavirus (ARP1) in rice seeds (MucoRice-ARP1). We intend to use a purification-free rice powder for clinical application but needed to check whether MucoRice-ARP1 had increased levels of known allergen proteins. For this purpose, we used two-dimensional fluorescence difference gel electrophoresis to compare the allergen protein levels in MucoRice-ARP1 and wild-type rice. We detected no notable differences, except in the levels of α-amylase/trypsin inhibitor-like family proteins. Because by this approach we could not completely separate ARP1 from the proteins of this family, we confirmed the absence of changes in the levels of these allergens by using shotgun mass spectrometry as well as immunoblot. By using immunoelectron microscopy, we also showed that RAG2, a member of the α-amylase/trypsin inhibitor-like protein family, was relocated from protein bodies II to the plasma membrane or cell wall in MucoRice-ARP1 seed. The relocation did not affect the level of RAG2. We demonstrated that most of the known rice allergens were not considerably upregulated by the genetic modification in MucoRice-ARP1. Our data suggest that MucoRice-ARP1 is a potentially safe oral antibody for clinical application., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
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33. Interlaboratory validation data on real-time polymerase chain reaction detection for unauthorized genetically modified papaya line PRSV-YK.
- Author
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Nakamura K, Kondo K, Akiyama H, Ishigaki T, Noguchi A, Katsumata H, Takasaki K, Futo S, Sakata K, Fukuda N, Mano J, Kitta K, Tanaka H, Akashi R, and Nishimaki-Mogami T
- Abstract
This article is referred to research article entitled "Whole genome sequence analysis of unidentified genetically modified papaya for development of a specific detection method" (Nakamura et al., 2016) [1]. Real-time polymerase chain reaction (PCR) detection method for unauthorized genetically modified (GM) papaya (Carica papaya L.) line PRSV-YK (PRSV-YK detection method) was developed using whole genome sequence data (DDBJ Sequenced Read Archive under accession No. PRJDB3976). Interlaboratory validation datasets for PRSV-YK detection method were provided. Data indicating homogeneity of samples prepared for interlaboratory validation were included. Specificity and sensitivity test data for PRSV-YK detection method were also provided.
- Published
- 2016
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34. Allelic frequencies and association with carcass traits of six genes in local subpopulations of Japanese Black cattle.
- Author
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Nishimaki T, Ibi T, Siqintuya, Kobayashi N, Matsuhashi T, Akiyama T, Yoshida E, Imai K, Matsui M, Uemura K, Eto H, Watanabe N, Fujita T, Saito Y, Komatsu T, Hoshiba H, Mannen H, Sasazaki S, and Kunieda T
- Subjects
- Animals, Body Weight genetics, Breeding methods, Fatty Acids, Genotype, Meat, Cattle genetics, Gene Frequency genetics, Genetic Association Studies veterinary, Genetic Markers, Phenotype, Selection, Genetic
- Abstract
Marker-assisted selection (MAS) is expected to accelerate the genetic improvement of Japanese Black cattle. However, verification of the effects of the genes for MAS in different subpopulations is required prior to the application of MAS. In this study, we investigated the allelic frequencies and genotypic effects for carcass traits of six genes, which can be used in MAS, in eight local subpopulations. These genes are SCD, FASN and SREBP1, which are associated with the fatty acid composition of meat, and NCAPG, MC1R and F11, which are associated with carcass weight, coat color and blood coagulation abnormality, respectively. The frequencies of desirable alleles of SCD and FASN were relatively high and that of NCAPG was relatively low, and NCAPG was significantly associated with several carcass traits, including carcass weight. The proportions of genotypic variance explained by NCAPG to phenotypic variance were 4.83 for carcass weight. We thus confirmed that NCAPG is a useful marker for selection of carcass traits in these subpopulations. In addition, we found that the desirable alleles of six genes showed no negative effects on carcass traits. Therefore, selection using these genes to improve target traits should not have negative impacts on carcass traits., (© 2015 Japanese Society of Animal Science.)
- Published
- 2016
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35. Development and Evaluation of Event-Specific Quantitative PCR Method for Genetically Modified Soybean MON87701.
- Author
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Tsukahara K, Takabatake R, Masubuchi T, Futo S, Minegishi Y, Noguchi A, Kondo K, Nishimaki-Mogami T, Kurashima T, Mano J, and Kitta K
- Subjects
- Base Sequence, Reproducibility of Results, Food Analysis methods, Food, Genetically Modified, Organisms, Genetically Modified, Polymerase Chain Reaction methods, Glycine max genetics
- Abstract
A real-time PCR-based analytical method was developed for the event-specific quantification of a genetically modified (GM) soybean event, MON87701. First, a standard plasmid for MON87701 quantification was constructed. The conversion factor (C
f ) required to calculate the amount of genetically modified organism (GMO) was experimentally determined for a real-time PCR instrument. The determined Cf for the real-time PCR instrument was 1.24. For the evaluation of the developed method, a blind test was carried out in an inter-laboratory trial. The trueness and precision were evaluated as the bias and reproducibility of relative standard deviation (RSDr), respectively. The determined biases and the RSDr values were less than 30 and 13%, respectively, at all evaluated concentrations. The limit of quantitation of the method was 0.5%, and the developed method would thus be applicable for practical analyses for the detection and quantification of MON87701.- Published
- 2016
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36. Transcriptome analyses demonstrate that Peroxisome Proliferator-Activated Receptor α (PPARα) activity of an ultraviolet absorber, 2-(2'-hydroxy-3',5'-di-tert-butylphenyl)benzotriazole, as possible mechanism of their toxicity and the gender differences.
- Author
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Hirata-Koizumi M, Ise R, Kato H, Matsuyama T, Nishimaki-Mogami T, Takahashi M, Ono A, Ema M, and Hirose A
- Subjects
- Animals, Chemical and Drug Induced Liver Injury genetics, Chemical and Drug Induced Liver Injury metabolism, Computational Biology, Databases, Genetic, Female, Gene Expression Regulation, Developmental, Liver metabolism, Male, Oligonucleotide Array Sequence Analysis, PPAR alpha metabolism, RNA, Messenger genetics, RNA, Messenger metabolism, Rats, Sprague-Dawley, Sex Factors, Time Factors, Chemical and Drug Induced Liver Injury etiology, Gene Expression Profiling methods, Liver drug effects, PPAR alpha agonists, Triazoles toxicity
- Abstract
2-(2'-Hydroxy-3',5'-di-tert-butylphenyl)benzotriazole (HDBB), the Benzotriazole UV-stabilizer (BUVSs) known as UV-320, is widely used in plastic materials for protection against UV-irradiation. Previously, we reported that oral ingestion of HDBB induce hepatotoxicity including hepatocyte hypertrophy and necrosis in rats and, males was more susceptible compared with females in young rats while no sex-related difference was observed in preweaning rats. Phenotypes observed in our previous study imply involvement of peroxisome proliferator-activated receptor (PPAR) α in HDBB hepatotoxicity, however, direct evidence that HDBB can activate PPARα has not been provided and the mechanism which underlying the gender difference of HDBB hepatotoxicity was not clearly elucidated. Here, we conduct transcriptome analysis using microarray expression profiles in the livers of rats administered HDBB. PPARα agonist activity of HDBB was elucidated by comparison with gene expression data of typical PPARα agonist, i.e. clofibrate, WY-14643, gemfibrozil, and fenofibrate, from TG GATEs database. Moreover, we analyzed for PPARα mRNA expression in the liver of developing male and female rats. PPARα mRNA expression level was higher in males than in females on postnatal days (PNDs) 28 and 35, whereas no sex-related difference was found on PNDs 7 and 22. These results suggest that HDBB exerts its hepatotoxicity through the PPARα signal pathway and the sex-related difference in PPARα expression may contribute to the sex-related difference in susceptibility to hepatotoxicity.
- Published
- 2016
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37. Different Results of IgE Binding- and Crosslinking-Based Allergy Tests Caused by Allergen Immobilization.
- Author
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Okamoto-Uchida Y, Nakamura R, Matsuzawa Y, Soma M, Kawakami H, Ishii-Watabe A, Nishimaki-Mogami T, Teshima R, and Saito Y
- Subjects
- Animals, Cell Line, Immunologic Tests, Mast Cells, Rats, Allergens immunology, Antibodies, Monoclonal immunology, Immobilized Proteins immunology, Immunoglobulin E immunology, Ovalbumin immunology
- Abstract
The physicochemical nature of allergen molecules differ from the liquid phase to the solid phase. However, conventional allergy tests are based on the detection of immunoglobulin (Ig)E binding to immobilized allergens. We recently developed an in vitro allergy testing method using a luciferase-reporting humanized rat mast cell line to detect IgE crosslinking-induced luciferase expression (EXiLE test). The aim of the present study was to evaluate the effects of antigen immobilization on the results of different in vitro allergy tests using two anti-ovalbumin (OVA) antibodies (Abs), E-C1 and E-G5, with different properties in the OVA-induced allergic reaction. Both Abs showed clear binding to OVA with an enzyme-linked immunosorbent assay and by BIAcore analysis. However, only E-C1 potentiated EXiLE response for the liquid-phase OVA. On the other hand, OVA immobilized on solid-phase induced EXiLE responses in both E-C1 Ab- and E-G5 Ab-sensitized mast cells. Western blotting of OVA indicated that E-C1 Ab binds both to OVA monomers and dimers, unlike E-G5 Ab, which probably binds only to the OVA dimer. These results suggest that antigen immobilization enhanced IgE crosslinking ability through multimerization of allergen molecules in the solid phase, resulting in an increase in false positives in IgE binding-based conventional in vitro allergy tests. These findings shed light on the physicochemical nature of antigens as an important factor for the development and evaluation of in vitro allergy tests and suggest that mast cell activation-based allergy testing with liquid-phase allergens is a promising strategy to evaluate the physiological interactions of IgE and allergens.
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- 2016
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38. Cas9 in Genetically Modified Food Is Unlikely to Cause Food Allergy.
- Author
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Nakajima O, Nishimaki-Mogami T, and Kondo K
- Subjects
- Base Sequence, CRISPR-Associated Proteins chemistry, CRISPR-Associated Proteins metabolism, Gastric Juice chemistry, Hot Temperature, Humans, Peptides genetics, Protein Stability, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Sequence Homology, Glycine max genetics, Zea mays genetics, Allergens genetics, CRISPR-Associated Proteins genetics, Food Hypersensitivity, Food, Genetically Modified
- Abstract
Genome editing has undergone rapid development during the last three years. It is anticipated that genetically modified organisms (GMOs) for food purposes will be widely produced using the clustered regularly interspaced short palindromic repeat/Cas9 (CRISPR)/Cas9 system in the near future. However, the Cas9 gene may then enter the genomes of GMOs for food if the breeding process is not strictly managed, which could lead to the Cas9 protein or associated peptides being produced within these organisms. A variety of peptides could theoretically be produced from the Cas9 gene by using open reading frames different from that of Cas9 in the GMOs. In this study, Cas9 and the peptides potentially encoded by Cas9 genes were studied regarding their immunogenicity, in terms of the digestibility of Cas9 and the homology of the peptides to food allergens. First, the digestibility and thermal stability of Cas9 were studied. Digestibility was tested with natural or heat-denatured Cas9 in simulated gastric fluid in vitro. The two types of Cas9 were digested rapidly. Cas9 was also gradually degraded during heat treatment. Second, the peptides potentially encoded by Cas9 genes were examined for their homology to food allergens. Specifically, an 8-mer exact match search and a sliding 80-mer window search were performed using allergen databases. One of the peptides was found to have homology with a food allergen.
- Published
- 2016
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39. Biochemical Characterization of Medaka (Oryzias latipes) Transglutaminases, OlTGK1 and OlTGK2, as Orthologues of Human Keratinocyte-Type Transglutaminase.
- Author
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Kikuta A, Furukawa E, Ogawa R, Suganuma N, Saitoh M, Nishimaki T, Katsumura T, Oota H, Kawamoto T, Tatsukawa H, Hashimoto H, and Hitomi K
- Subjects
- Amino Acid Sequence, Animals, Fish Proteins genetics, Fish Proteins metabolism, Humans, Kinetics, Molecular Sequence Data, Oryzias metabolism, Phylogeny, Transglutaminases genetics, Transglutaminases metabolism, Epidermis enzymology, Fish Proteins chemistry, Transglutaminases chemistry
- Abstract
Calcium-dependent transglutaminases (TGs) are a family of enzymes that catalyze protein cross-linking and/or attachment of primary amines in a variety of organisms. Mammalian TGs are implicated in multiple biological events such as skin formation, blood coagulation, and extracellular matrix stabilization. Medaka (Oryzias latipes) has been used as a model fish to investigate the physiological functions of mammalian proteins. By analysis of the medaka genome, we found seven TGs orthologues, some of which apparently corresponded to the mammalian TG isozymes, TG1, TG2, and Factor XIII. All orthologues had preserved amino acid residues essential for enzymatic activity in their deduced primary structures. In this study, we analyzed biochemical properties of two orthologues (OlTGK1 and OlTGK2) of mammalian epithelium-specific TG (TG1) that are significantly expressed at the transcriptional level. Using purified recombinant proteins for OlTGK1 and OlTGK2, we characterized their catalytic reactions. Furthermore, immunohistochemical analyses of fish sections revealed higher expression in the pancreas (OTGK1), intervertebral disk (OlTGK2) and pharyngeal teeth (OlTGK2) as well as in the skin epidermis.
- Published
- 2015
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40. Characterization of hepatic lipid profiles in a mouse model with nonalcoholic steatohepatitis and subsequent fibrosis.
- Author
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Saito K, Uebanso T, Maekawa K, Ishikawa M, Taguchi R, Nammo T, Nishimaki-Mogami T, Udagawa H, Fujii M, Shibazaki Y, Yoneyama H, Yasuda K, and Saito Y
- Subjects
- Animals, Diet, High-Fat, Disease Models, Animal, Fatty Acids metabolism, Liver pathology, Mice, Phospholipids metabolism, Sphingolipids metabolism, Lipids chemistry, Liver metabolism, Liver Cirrhosis etiology, Liver Cirrhosis metabolism, Non-alcoholic Fatty Liver Disease complications, Non-alcoholic Fatty Liver Disease metabolism
- Abstract
Nonalcoholic steatohepatitis (NASH) is a major health problem since it often leads to hepatocellular carcinoma. However, the underlying mechanisms of NASH development and subsequent fibrosis have yet to be clarified. We compared comprehensive lipidomic profiles between mice with high fat diet (HFD)-induced steatosis and STAM mice with NASH and subsequent fibrosis. The STAM mouse is a model that demonstrates NASH progression resembling the disease in humans: STAM mice manifest NASH at 8 weeks, which progresses to fibrosis at 12 weeks, and finally develop hepatocellular carcinoma. Overall, 250 lipid molecules were detected in the liver using liquid chromatography-mass spectrometry. We found that STAM mice with NASH presented a significantly higher abundance of sphingolipids and lower levels of triacylglycerols than the HFD-fed control mice. The abundance of certain fatty acids in phospholipid side chains was also significantly different between STAM and control mice, although global levels of phosphatidylcholines and phosphatidylethanolamines were comparable. Finally, increase in levels of acylcarnitines and some diacylglycerols was observed in STAM mice toward the fibrosis stage, but not in age-matched control mice. Our study provides insights into the lipid status of the steatotic, NASH, and fibrotic liver that would help elucidate the molecular pathophysiology of NASH progression.
- Published
- 2015
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41. Oral administration of apple condensed tannins delays rheumatoid arthritis development in mice via downregulation of T helper 17 (Th17) cell responses.
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Nakamura K, Matsuoka H, Nakashima S, Kanda T, Nishimaki-Mogami T, and Akiyama H
- Subjects
- Administration, Oral, Animals, Arthritis, Rheumatoid immunology, Cells, Cultured, Cytokines metabolism, Disease Models, Animal, Down-Regulation drug effects, Interleukin-17 genetics, Interleukin-17 metabolism, Mice, Inbred DBA, Proanthocyanidins administration & dosage, Spleen cytology, Th17 Cells immunology, Th17 Cells metabolism, Arthritis, Rheumatoid prevention & control, Malus chemistry, Proanthocyanidins pharmacology, Th17 Cells drug effects
- Abstract
Apples are known to contain high concentrations of phenolic compounds such as condensed tannins. Consumption of condensed tannins has been reported to reduce the risk of many types of chronic diseases including allergies. However, their therapeutic effectiveness and potential in treating autoimmune disease remain controversial. Here, the effect of oral administration of apple condensed tannins (ACT) prepared from apples (Malus pumila cv. Fuji) on bovine type II collagen (CII)-induced arthritis in DBA1/J mice, a well-established murine model of human rheumatoid arthritis (RA), was evaluated. As compared to the control (without ACT administration) group, RA development was delayed and a significant reduction in the RA clinical score was observed in the ACT-administered group. Using cultured splenocytes isolated from CII-immunized mice, ACT-administration was shown to decrease the CII-induced increases in IL-17 expression and production in vitro. We propose that downregulation of T helper (Th) 17 cells is responsible for the ACT-induced RA suppression., (© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2015
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42. Silver Nanoscale Hexagonal Column Chips for Detecting Cell-free DNA and Circulating Nucleosomes in Cancer Patients.
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Ito H, Hasegawa K, Hasegawa Y, Nishimaki T, Hosomichi K, Kimura S, Ohba M, Yao H, Onimaru M, Inoue I, and Inoue H
- Subjects
- Cell Line, Tumor, DNA blood, DNA Methylation, Early Detection of Cancer, Humans, Microscopy, Confocal, Microscopy, Electron, Scanning, Neoplasms blood, Neoplasms pathology, DNA analysis, Nanostructures chemistry, Neoplasms diagnosis, Nucleosomes metabolism, Silver chemistry, Spectrum Analysis, Raman
- Abstract
Blood tests, which are commonly used for cancer screening, generally have low sensitivity. Here, we developed a novel rapid and simple method to generate silver nanoscale hexagonal columns (NHCs) for use in surface-enhanced Raman scattering (SERS). We reported that the intensity of SERS spectra of clinical serum samples obtained from gastrointestinal cancer patients is was significantly higher than that of SERS spectra of clinical serum samples obtained from non-cancer patients. We estimated the combined constituents on silver NHCs by using a field emission-type scanning electron microscope, Raman microscopes, and a 3D laser scanning confocal microscope. We obtained the Raman scattering spectra of samples of physically fractured cells and clinical serum. No spectra were obtained for chemically lysed cultured cells and DNA, RNA, and protein extracted from cultured cells. We believe that our method, which uses SERS with silver NHCs to detect circulating nucleosomes bound by methylated cell-free DNA, may be successfully implemented in blood tests for cancer screening.
- Published
- 2015
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43. Clinicopathological factors predicting R0 resection and long-term survival after esophagectomy in patients with T4 esophageal cancer undergoing induction chemotherapy or chemoradiotherapy.
- Author
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Karimata H, Shimoji H, and Nishimaki T
- Subjects
- Adult, Aged, Aged, 80 and over, Analysis of Variance, Biomarkers, Tumor blood, C-Reactive Protein analysis, Deglutition Disorders therapy, Esophageal Neoplasms pathology, Esophageal Neoplasms therapy, Female, Humans, Male, Middle Aged, Neoplasm Staging, Predictive Value of Tests, Prognosis, Serum Albumin analysis, Survival Rate, Time Factors, Chemoradiotherapy mortality, Esophageal Neoplasms mortality, Esophageal Neoplasms surgery, Esophagectomy mortality, Induction Chemotherapy mortality
- Abstract
Purpose: To identify clinicopathological factors predicting R0 resection and long-term survival after esophagectomy in patients with T4 esophageal cancer following induction chemotherapy or chemoradiotherapy., Methods: Of 48 patients with T4 esophageal cancer who underwent induction treatment, 30 underwent R0 esophagectomy. The factors predicting R0 resection and prognostic indicators were assessed in the 48 and 30 patients, respectively, using univariate and multivariate analyses., Results: In the univariate analyses, the primary tumor response, improvement of dysphagia, the post-induction therapy Glasgow Prognostic Score, an early tumor response and the post-induction therapy serum albumin and C-reactive protein levels were significantly correlated with R0 resection. Multivariate logistic regression analyses revealed that the response status and improvement of dysphagia were independent predictors of R0 resection. The univariate analyses identified a yp-T classification (yp-T0/1 vs. yp-T2/3/4), yp-nodal status and the number of pathologically positive nodes post-therapy (≤ 1 vs. ≥ 2) as significant prognostic factors. The multivariate analysis revealed that the number of pathologically positive nodes was the only significant independent prognostic indicator., Conclusion: Patients showing an early tumor response to induction treatment and improvement of dysphagia may be appropriate candidates for esophagectomy, and individualized postoperative management strategies should be developed for patients with initially unresectable T4 esophageal cancer who have ≥ 2 positive nodes post-treatment.
- Published
- 2015
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44. Prenatal regression of the trophotaenial placenta in a viviparous fish, Xenotoca eiseni.
- Author
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Iida A, Nishimaki T, and Sehara-Fujisawa A
- Subjects
- Animals, Caspase 3 biosynthesis, Epidermis growth & development, Epidermis metabolism, Erythrocytes metabolism, Female, Fishes growth & development, Mesoderm growth & development, Mesoderm metabolism, Placenta metabolism, Pregnancy, Embryo, Nonmammalian, Fishes metabolism, Placenta embryology
- Abstract
The trophotaenial placenta is a branching, ribbon-like structure that extends from the perianal region of the embryo in viviparous teleost fishes belonging to the family Goodeidae. It is a hindgut-derived pseudoplacenta, which contributes to absorbing maternal nutrients during the prenatal stage. The trophotaeniae are known to reduce at birth; however, no previous study has evaluated the removal mechanisms. We report here the analysis of the trophotaeniae using the goodeid fish species Xenotoca eiseni. The X. eiseni trophotaenia consists of an epidermal cell layer, mesenchyme, vasculature, and circulating erythrocytes. The trophotaeniae had preliminary regressed when the embryo was born. Immunohistochemistry indicated that caspase3-activated cells with fragmented nuclei are present in the regressed processes of the fry immediately after birth, but not in the vasculature and blood cells. This finding suggests that the trophotaenia is rapidly resorbed by apoptosis in the last phase of the pregnancy and that its circulatory pathway is maintained. Such prenatal regression of pseudoplacentae has not been reported in other viviparous vertebrates. On the other hand, similar apoptotic remodeling in the gut has been reported in amphibians, which is regulated by thyroid hormone. Thus, apoptotic regression of the trophotaeniae might occur in a manner similar to amphibian metamorphosis.
- Published
- 2015
- Full Text
- View/download PDF
45. High-temperature calcined fullerene nanowhiskers as well as long needle-like multi-wall carbon nanotubes have abilities to induce NLRP3-mediated IL-1β secretion.
- Author
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Cui H, Wu W, Okuhira K, Miyazawa K, Hattori T, Sai K, Naito M, Suzuki K, Nishimura T, Sakamoto Y, Ogata A, Maeno T, Inomata A, Nakae D, Hirose A, and Nishimaki-Mogami T
- Subjects
- Amino Acid Chloromethyl Ketones pharmacology, Carrier Proteins antagonists & inhibitors, Carrier Proteins metabolism, Caspase 1 genetics, Caspase 1 metabolism, Caspase Inhibitors pharmacology, Cell Line, Fullerenes chemistry, Gene Expression, Hot Temperature, Humans, Inflammasomes drug effects, Inflammasomes metabolism, Interleukin-1beta biosynthesis, Macrophages cytology, Macrophages metabolism, NLR Family, Pyrin Domain-Containing 3 Protein, Nanofibers chemistry, Nanotubes, Carbon chemistry, RNA, Small Interfering genetics, RNA, Small Interfering metabolism, Carrier Proteins genetics, Fullerenes pharmacology, Interleukin-1beta metabolism, Macrophages drug effects, Nanofibers toxicity, Nanotubes, Carbon toxicity
- Abstract
Because multi-wall carbon nanotubes (MWCNTs) have asbestos-like shape and size, concerns about their pathogenicity have been raised. Contaminated metals of MWCNTs may also be responsible for their toxicity. In this study, we employed high-temperature calcined fullerene nanowhiskers (HTCFNWs), which are needle-like nanofibers composed of amorphous carbon having similar sizes to MWCNTs but neither metal impurities nor tubular structures, and investigated their ability to induce production a major proinflammatory cytokine IL-1β via the Nod-like receptor pyrin domain containing 3 (NLRP3)-containing flammasome-mediated mechanism. When exposed to THP-1 macrophages, long-HTCFNW exhibited robust IL-1β production as long and needle-like MWCNTs did, but short-HTCFNW caused very small effect. IL-1β release induced by long-HTCFNW as well as by long, needle-like MWCNTs was abolished by a caspase-1 inhibitor or siRNA-knockdown of NLRP3, indicating that NLRP3-inflammasome-mediated IL-1β production by these carbon nanofibers. Our findings indicate that the needle-like shape and length, but neither metal impurities nor tubular structures of MWCNTs were critical to robust NLRP3 activation., (Copyright © 2014 Elsevier Inc. All rights reserved.)
- Published
- 2014
- Full Text
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46. Clinical and oncological effects of triplet chemotherapy followed by radical esophagectomy for resectable esophageal cancer associated with unfavorable prognostic factors.
- Author
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Shimoji H, Kinjo T, Karimata H, Nagahama M, and Nishimaki T
- Subjects
- Adult, Aged, Aged, 80 and over, Cohort Studies, Doxorubicin administration & dosage, Esophageal Neoplasms mortality, Female, Fluorouracil administration & dosage, Humans, Male, Middle Aged, Organoplatinum Compounds administration & dosage, Prognosis, Prospective Studies, Survival Rate, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Chemotherapy, Adjuvant, Esophageal Neoplasms drug therapy, Esophageal Neoplasms surgery, Esophagectomy methods, Neoadjuvant Therapy
- Abstract
Purposes: The purpose of this study was to evaluate the hypothesis that the survival of patients undergoing R0 resection after triplet chemotherapy for resectable esophageal cancer with unfavorable prognostic factors (Category 3) would be similar to that of patients undergoing esophagectomy for esophageal cancer without such factors (Category 1)., Methods: Patients with Category 3 tumors were assigned to receive triplet chemotherapy consisting of 5-fluorouracil, doxorubicin and nedaplatin (FAN) followed by radical esophagectomy. The outcomes of the bimodality treatment for Category 3 patients (n = 25) were compared with those of Category 1 patients (n = 41) in a prospective cohort study., Results: Grade 3 or higher toxicity developed during chemotherapy in 32 % of the Category 3 patients, with no treatment-related deaths. No significant difference was detected in the surgery-related mortality and morbidity rates between the two groups. The recurrence-free survival was significantly worse in Category 3 than in Category 1 patients (p = 0.002), although the overall survival was not significantly different (p = 0.085) between the two groups in cases of R0 resection (5-year survival rates: 34.4 vs. 66.5 %)., Conclusions: Although FAN chemotherapy followed by radical esophagectomy can be safely performed, this treatment modality may not have sufficient power to cure Category 3 disease.
- Published
- 2014
- Full Text
- View/download PDF
47. Prevalence of hepatitis B virus infection in patients with rheumatic diseases in Tohoku area: a retrospective multicenter survey.
- Author
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Watanabe R, Ishii T, Kobayashi H, Asahina I, Takemori H, Izumiyama T, Oguchi Y, Urata Y, Nishimaki T, Chiba K, Komatsuda A, Chiba N, Miyata M, Takagi M, Kawamura O, Kanno T, Hirabayashi Y, Konta T, Ninomiya Y, Abe Y, Murata Y, Saito Y, Ohira H, Harigae H, and Sasaki T
- Subjects
- Biomarkers blood, Hepatitis B complications, Hepatitis B diagnosis, Humans, Immunosuppressive Agents therapeutic use, Japan epidemiology, Lupus Erythematosus, Systemic blood, Lupus Erythematosus, Systemic complications, Lupus Erythematosus, Systemic virology, Mass Screening, Prevalence, Retrospective Studies, Rheumatic Diseases blood, Rheumatic Diseases complications, Hepatitis B epidemiology, Hepatitis B virology, Hepatitis B virus physiology, Lupus Erythematosus, Systemic epidemiology, Rheumatic Diseases epidemiology
- Abstract
Hepatitis B virus (HBV) reactivation has been increasingly recognized in patients receiving chemotherapy and immunosuppressive therapy; however, the prevalence of HBV infection and rate of HBV screening in patients with rheumatic diseases remains unclear. In this study, we aimed to assess the prevalence of HBV infection and fulminant HBV hepatitis in patients with rheumatic diseases. We also investigated the rate of HBV screening before immunosuppressive therapy in patients with rheumatic diseases. A retrospective questionnaire survey was conducted in the North-east area (Tohoku) of Japan. Questionnaires, comprising 6 questions, were sent to 318 rheumatologists in May 2010, and responses were gathered until June 2011. In total, 71 rheumatologists (22.3%) responded to the survey. We enrolled 7,650 patients with rheumatoid arthritis (RA) and 1,031 patients with systemic lupus erythematosus (SLE). When limited to institutes at which almost all (≥ 90%) patients were tested for HBV serology, 1.1% (40/3,580) patients with RA and 0.3% (3/1,128) patients with SLE were positive for hepatitis B surface antigen (HBsAg), and 25.2% (177/703) patients with RA and 13.7% (34/248) patients with SLE were positive for hepatitis B core antibody (HBcAb). About one-third of rheumatologists did not check HBsAg and more than half did not check hepatitis B surface antibody (HBsAb) or HBcAb at all before therapy. Fulminant HBV hepatitis was observed in 1 RA patient who was current HBV carrier. In conclusion, the prevalence of HBV infection is high in patients with RA and SLE. HBV screening before immunosuppressive therapy should be strictly performed.
- Published
- 2014
- Full Text
- View/download PDF
48. Acute phlegmonous esophagitis as a rare but threatening complication of chemoradiotherapy: report of a case.
- Author
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Karimata H, Nishimaki T, Oshita A, Nagahama M, Shimoji H, Inamine M, and Kinjyo T
- Subjects
- Acute Disease, Anti-Bacterial Agents administration & dosage, Cellulitis diagnosis, Cellulitis microbiology, Cellulitis therapy, Esophagitis diagnosis, Esophagitis microbiology, Esophagitis therapy, Female, Granulocyte Colony-Stimulating Factor administration & dosage, Hemodiafiltration, Hemoperfusion, Humans, Middle Aged, Shock, Septic microbiology, Shock, Septic therapy, Streptococcal Infections, Streptococcus milleri Group isolation & purification, Treatment Outcome, Carcinoma therapy, Cellulitis etiology, Chemoradiotherapy adverse effects, Esophagitis etiology, Uterine Cervical Neoplasms therapy
- Abstract
Phlegmonous infection involving the digestive tract has been reported to have a poor prognosis. However, the pathogenesis and clinical features of acute phlegmonous esophagitis have remained unclear due to the rarity of the disease. We herein report a case of acute phlegmonous esophagitis that showed a fulminant course during chemoradiotherapy for uterine cancer. The patient developed septic shock 10 h after postprandial nausea and vomiting, and a computed tomographic scan showed diffuse thickening of the esophageal wall. Severe leukopenia that was refractory to the administration of granulocyte colony-stimulating factor persisted during the first few days. The patient fortunately survived after intensive treatment. The acute phlegmonous esophagitis of the present case might have been evoked and worsened by chemoradiotherapy due to its emetic and myelosuppressive adverse effects, respectively. Although its incidence is extremely rare, acute phlegmonous esophagitis may occur as a life-threatening complication of chemoradiotherapy.
- Published
- 2014
- Full Text
- View/download PDF
49. Prognostic significance of simultaneous presence of histological and immunohistochemical metastasis to lymph nodes in patients with esophageal cancer.
- Author
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Kinjo T, Shimoji H, Nagahama M, Karimata H, Yoshimi N, and Nishimaki T
- Subjects
- Aged, Biopsy, Chemoradiotherapy, Adjuvant, Chemotherapy, Adjuvant, Chi-Square Distribution, Esophageal Neoplasms mortality, Esophageal Neoplasms therapy, Esophagectomy, Female, Humans, Kaplan-Meier Estimate, Lymphatic Metastasis, Male, Middle Aged, Multivariate Analysis, Neoadjuvant Therapy, Neoplasm Micrometastasis, Neoplasm Staging, Predictive Value of Tests, Proportional Hazards Models, Prospective Studies, Risk Factors, Treatment Outcome, Biomarkers, Tumor analysis, Esophageal Neoplasms chemistry, Esophageal Neoplasms pathology, Immunohistochemistry, Lymph Nodes chemistry, Lymph Nodes pathology
- Abstract
Purpose: Presence of simultaneous pathological and immunohistochemical nodal metastasis (pNM and iNM, respectively) and/or other clinical factors may be reliable prognostic predictors of survival in esophageal cancer patients who have undergone multidisciplinary treatment., Methods: Univariate and multivariate analysis of the data collected from 77 patients who had undergone R0 esophagectomy was performed to determine the significance of presence of iNM or pNM, presence of simultaneous pNM, and other clinical factors as prognostic indicators in patients who had (n = 40) and had not (n = 37) undergone preoperative treatment., Results: Presence of pNM was found to be a significant prognostic predictor in patients who had undergone preoperative treatment, presence of iNM in patients who had not undergone preoperative treatment, and presence of simultaneous pNM and iNM in both patient groups. Multivariate analysis indicated that the sole prognostic predictor for patients who had undergone preoperative treatment was presence of simultaneous pNM and iNM while that of patients who had not undergone preoperative treatment was clinical T category., Conclusion: Assessment of simultaneous presence of pNM and iNM may facilitate highly accurate prediction of survival in esophageal cancer patients undergoing R0 esophagectomy, regardless of whether they have undergone preoperative treatment.
- Published
- 2014
- Full Text
- View/download PDF
50. Identification and detection of genetically modified papaya resistant to papaya ringspot virus strains in Thailand.
- Author
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Nakamura K, Kondo K, Kobayashi T, Noguchi A, Ohmori K, Takabatake R, Kitta K, Akiyama H, Teshima R, and Nishimaki-Mogami T
- Subjects
- Base Sequence, Carica virology, Food, Genetically Modified, Fruit, Humans, Molecular Sequence Data, Real-Time Polymerase Chain Reaction methods, Thailand, Carica genetics, DNA, Plant analysis, Disease Resistance genetics, Genetic Vectors, Plant Diseases genetics, Plant Diseases virology, Plant Viruses, Plants, Genetically Modified genetics, Plants, Genetically Modified virology
- Abstract
Many lines of genetically modified (GM) papaya (Carica papaya Linnaeus) have been developed worldwide to resist infection from various strains of papaya ringspot virus (PRSV). We found an unidentified and unauthorized GM papaya in imported processed papaya food. Transgenic vector construct that provides resistance to the PRSV strains isolated in Thailand was detected. An original and specific real-time polymerase chain reaction method was generated to qualitatively detect the PRSV-Thailand-resistant GM papaya.
- Published
- 2014
- Full Text
- View/download PDF
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