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From 2014 to 2021 during the cyclone seasons, extensive monitoring of the hydrodynamics within a variety of lagoons of New Caledonia was conducted as a part of the PRESENCE project (PRESsures on coral Ecosystems of New CalEdonia). The PRESENCE project is aimed at building an efficient representation of the land–lagoon–ocean continuum at Grande Terre, New Caledonia's main island. Overall, coastal physical observations encompassed five different lagoons (four of which were never before monitored) and at least eight major atmospheric events ranging from tropical depressions to category 4 cyclones. The main objectives of this study were to characterize the processes controlling the hydrodynamics and hydrology of these lagoons (e.g., ocean–lagoon exchanges, circulation, level dynamics, temperature, and salinity variability), and to capture the magnitude of change during extreme events. An additional objective was to compile an adequate data set for future use in high-resolution hydrodynamic models. Autonomous oceanographic instruments were moored at strategic locations to collect time series of temperature, salinity, pressure, and Eulerian currents. Additionally, Lagrangian surface currents were observed through deploying drifter buoys, and cross-shore hydrological profile radials were carried out using CTDs (conductivity, temperature, depth). In total, five survey campaigns were conducted, beginning with the SPHYNX campaign which lasted 15 months (December 2014 to February 2016) in the Hienghène–Touho lagoon and ended with the 9 months NEMO campaign (September 2020 to April 2021) in Moindou lagoon. Between these were the 5 months NOUMEA campaign (December 2016 to April 2017) in Noumea lagoon, the 6 months ELADE campaign (February to August 2018) in the Poe lagoon, and the 5 months CADHYAK campaign (December 2019 to May 2020) in Koumac lagoon. In addition to characterizing these lagoons, the data set identifies important features and processes, such as the presence of internal waves on forereefs, wave-driven fluxes over reef barriers, and exchanges through passes. Signatures from strong events were also identified, including surges, thermal drops inside lagoons, and massive flash flood plume dispersion. Raw data sets were processed, controlled for quality, validated, and analyzed. Processed files are made publicly available in dedicated repositories on the SEANOE marine data platform in NetCDF format. Links (DOI) of individual data sets are provided herein.

International audience; Inspired by agroecology, ecological aquaculture proposes an alternative model that uses ecology as a paradigm to develop innovative, more eco-friendly aquaculture with environmental, economic and social benefits. Integrated multi-trophic aquaculture (IMTA) is one application of this principle. Inspired by the natural trophic chain, it associates primary producers with primary or secondary consumers, providing a new source of biomass without requiring supplementary feed by recycling inorganic and organic wastes. Of these systems, land-based IMTAs demonstrate several advantages, especially easier control of nutrient flows, contaminants and/or predators. This study focused on a land-based marine IMTA, combining a recirculating aquaculture system for fish consecutively with a natural marine polyculture of microalgae and oyster cultivation. The objective was to assess the ability of the microalgal polyculture both to bioremediate fish nutrients and to sustain oyster growth. For the first time in a Mediterranean climate, we confirmed the feasibility of developing a microalgae community of interest for oysters maintained by fish effluent. Despite strong variability in microalgae production, this IMTA system resulted in significant oyster growth over the experimental period of one month, with growth results of the same order of magnitude as natural juvenile growth. In the conditions tested, this IMTA with reduced human intervention allowed a gain in recoverable biomass of 3.7 g of oyster produced per kg of fish feed distributed. By transforming waste into additional biomass, IMTAs offer a more promising, ecological avenue for aquaculture, based on a circular economy, which may in turn increase the social acceptability of fish farming.

The use of detritivores under sea farms is a promising avenue to mitigate the benthic impacts of marine fish farms. Sea cucumbers are interesting candidates for integrated multi-trophic aquaculture (IMTA) due to their prevalence in the marine environment, their diversified diet and their economic value. Yet limited information is available regarding their capacities to be stocked and reared underneath aquaculture cages and the associated effects on their survival, growth rate and body composition. This study focused on Holothuria tubulosa, a Mediterranean sea cucumber species candidate for rearing in the vicinity to marine fish cages. We investigated its potential for co-culture on the seabed more or less influenced by marine fish cages. The farm's waste footprint was predicted using a dispersion model (NewDEPOMOD) to estimate the farm's influence along a transect where we also sampled sediment at four distances from the cages (0 m, 25 m, 100 m from the cages, plus a reference site at 150 m). Organic composition of the sediment was analysed (TOC, TON, TOP, OM, stable isotope signature) and linked to the results from the dispersion model. Based on the model simulation, the maximum flux of matter reached almost 17 kg solids.m−2.year−1 below the cages, and gradually decreased with distance from the cages. An isotopic gradient was also found in the sediments according to the distance from the farm, with an enrichment in δN15 and a depletion in δC13 with increasing proximity to the farm. In parallel we investigated the response of adult sea cucumbers placed at varying distances from the fish cages for a period of one month, measuring their proximate composition, isotopic concentration, and fatty acid and protein composition. We found that despite good survival, growth was null over the experiment. While the isotope signature of the sea cucumbers was significantly affected by distance from the cage, this did not follow the pattern found in sediment. There was a clear difference in fatty acid composition between sites, with sea cucumbers closer to the cages having lower levels of short-chain fatty acids. The protein content was also lower in sea cucumbers reared right below the cages. These results suggest that while adult H. tubulosa can survive the environmental conditions below marine aquaculture cages, they do not nutritionally benefit from fish waste over short periods in the stocking conditions we tested. Their use in IMTA requires further investigation to find optimal stocking conditions.

International audience; In the grow-out ponds of the blue shrimp (Litopenaeus stylirostris) farms of New Caledonia, animals with orange gills (OG) have been observed over the last ten years, with up to 70% of the shrimp in a given pond being affected. During the processing and marketing of the product, this coloring leads to reduced quality and selling prices, resulting in lower income for the producers concerned. Individual observations and transfer experiments led us to conclude that gill coloration intensity varies according to the intermolt stages, ranging from white in the postmolt stage to a deep orange in the premolt stage, which then disappeared after molting. Histological, biochemical studies and a semiquantitative analysis by scanning electronic microscopy (SEM + EDX) showed that the coloration is due to layers of iron which settle on the gill tissue surface in a heterogeneous way. Because Cr and Co showed an increase in their concentrations on the whole orange gills but not at their surface, it is possible that elements were mobilized and transported (translocated) from the exoskeleton to the tissue. Animals kept out of contact with sediment show a decrease in OG intensity, suggesting a link with the sediment biogeochemistry. In grow-out ponds, orange gills first appeared in shrimp populations between 10 and 13 weeks after stocking and reached a maximum after 15 weeks. These findings are discussed with a view to identifying the environmental processes that lead to metal accumulation on gills.

French Mediterranean coastal lagoons have been subject to huge inputs of urban nutrients for decades leading to the eutrophication of these vulnerable ecosystems. In response to new environmental regulations, some of the lagoons have recently been the subject of large-scale management actions targeting the waste water treatment systems located on their watersheds. While the eutrophication of coastal ecosystems is well described, recovery trajectories have only recently been studied. To assess the rapidity and the extent of the effect of the remediation actions, we analysed data from a 14-year time series resulting from the monitoring of nutrients, biomass and the abundance of phytoplankton in the water column of French Mediterranean coastal lagoons covering the whole anthropogenic eutrophication gradient. Following a 50% to 80% reduction in total phosphorus (TP) and total nitrogen (TN) urban loadings from the watershed of hypertrophic and eutrophic ecosystems, the integrative parameters chlorophyll a, TN and TP, provide evidence for a rapid response (1 to 3 years) and for an almost complete recovery, suggesting no hysteresis for the eutrophic lagoon. However, our findings also show that recovery patterns depend on the eutrophication status before remediation and may include feedback responses. The different responses revealed by our results should help stakeholders prioritise remediation actions and identify appropriate restoration goals, especially in light of the targets of the Water Framework Directive (WFD).

International audience; Increases in the intensity of disturbances in coastal lagoons can lead to shifts in vegetation from aquatic angiosperms to macroalgal or phytoplankton communities. Such abrupt and discontinuous responses are facilitated by instability in the equilibrium controlling the trajectory of the community response. We hypothesized that the shift in macrophyte populations is reversible, and that this reversibility is dependent on changes in the pressures exerted on the watershed and lagoon functioning. Biguglia lagoon (Mediterranean Sea, Corsica) is an interesting case study for the evaluation of long-term coastal lagoon ecosystem functioning and the trajectory of submerged macrophyte responses to disturbances, to facilitate the appropriate restoration of ecosystems. We used historical data for a two hundred-year period to assess changes in human activities on the watershed of the Biguglia lagoon. Macrophyte mapping (from 1970) and monitoring data for dynamics (from 1999) were used to investigate the trajectory of the community response. The changes observed in this watershed included a large number of hydrological developments affecting salinity and resulting in changes in macrophyte distribution. Nutrient inputs over the last 40 years have led to a shift in the aquatic vegetation from predominantly aquatic angiosperm community to macroalgae and phytoplankton in 2007 (dystrophic crisis). Changes in hydrological management and improvements in sewage treatment after 2007 led to a significant increase of aquatic angiosperms over a relatively short period of time (4–5 years), particularly for Ruppia cirrhosa and Stuckenia pectinata. There has been a significant resurgence of Najas marina, due to changes in salinity. The observed community shift suggests that Biguglia lagoon is resilient and that the transition may be reversible. The restored communities closely resemble those present before disturbance. These findings demonstrate the need to understand watershed exploitation and ecosystem variability in lagoon restoration.

Ensuring the sustainability of fish resources necessitates understanding their interaction with coastal habitats, which is becoming ever more challenging in the context of ever increasing anthropogenic pressures. The ability of coastal lagoons, exposed to major sources of disturbance, to provide resources and suitable habitats for growth and survival of juvenile fish is especially important. We analysed three lagoons with different ecological statuses and habitat quality on the basis of their eutrophication and ecotoxicity (Trix test) levels. Fish abundances were sampled using fishing and horizontal beaming acoustic surveys with the same protocols in the same year. The relative abundance of Anguilla anguilla, Dicentrarchus labrax or the Mugilidae group was not an indicator of habitat quality, whereas Atherina boyeri and Sparus aurata appeared to be more sensitive to habitat quality. Fish abundance was higher in the two lagoons with high eutrophication and ecotoxicity levels than in the less impacted lagoon, while fish sizes were significantly higher in the two most severely impacted lagoons. This leads us to suggest low habitat quality may increase fish growth rate (by the mean of a cascading effect), but may reduce lagoon juvenile abundance by increasing larval mortality. Such a hypothesis needs to be further validated using greater investigations which take into account more influences on fish growth and recruitment in such variable environments under complex multi-stressor conditions.

Atmospheric concentrations and deposition fluxes of PCDD/F and PCB have been evaluated over a 1-year period in a Mediterranean coastal lagoon (Etang de Thau, France). Indicative PBDE air concentrations in the hot season are also reported in this work. Sigma 2,3,7,8-PCDD/Fs and Sigma 18PCBs (gas + particulate) air concentrations ranged from 67 to 1700 fg m(-3) and from 13 to 95 pg m(-3), respectively whereas Sigma 8PBDEs (gas + particulate) summer time levels varied from 158 to 230 pg m(-3). The PCDD/F and PCB atmospheric occurrence over Thau lagoon and subsequent inputs to the surface waters are determined by an assemble of factors, being the seasonality of atmospheric concentration, the air mass origin and meteorological conditions important drivers. Total (wet + dry) Sigma 2,3,7,8-PCDD/Fs and Sigma 18PCBs deposition fluxes to Thau Lagoon waters are 117 and 715 pg m(-2) d(-1), respectively.

International audience; The Thau lagoon, located in southern France, suffers episodically from anoxic crises locally known as 'malaigue'. Such crises mostly occur under warm conditions, low winds leading to a strong eutrophication of the lagoon. The development of a sulphur bacterium sometimes gives locally to the waters a 'milky turquoise' appearance and leads to shellfish mortality. One of the indicators of the eutrophication status of the lagoon can be surveyed by the chlorophyll product provided by remote sensing images such as Medium Resolution Imaging Spectrometer (MERIS). In this paper we compare chl2 (or algal2) estimations provided by MERIS level 2 products and the ground measurements of chlorophyll a concentrations in water and we propose a linear correction of the chl2 MERIS product. The corrected chl2 estimations obtained over four years are analysed to understand the seasonal evolution of the trophic status of the Thau lagoon. We also study the influence of the anoxic crises of summers 2003 and 2006 on the chl2 estimations and we find a strong correlation between chl2 and the oxygen percentage at 1 m depth (0.70 for measurements in summers 2003 and 2006).

A cross-ecosystem comparison of data obtained from 20 French Mediterranean lagoons with contrasting eutrophication status provided the basis for investigating the variables that best predict chlorophyll a (Chl a) concentrations and nutrient limitation of phytoplankton biomass along a strong nutrient enrichment gradient. Summer concentrations of dissolved inorganic nitrogen (DIN) and phosphorus (DIP) comprised only a small fraction of total nitrogen (TN) and total phosphorus (TP). On the basis of inorganic nutrient concentrations, the most oligotrophic lagoons appeared to be phosphorus-limited, with a tendency towards the development of nitrogen limitation as eutrophication increased, as evidenced by decreasing DIN:DIP ratios. A weak but significantly positive relationship was found between dissolved silicate (DSi) and Chl a, reflecting DSi accumulation in the water column along the trophic state gradient and implying a progressive shift away from potential Si limitation of phytoplankton growth. Observed concentrations of Chl a were far better explained by TN and TP than by DIN and DIP concentrations, suggesting that a total nutrient based approach is likely to be the most appropriate for managing eutrophication in Mediterranean lagoons and other coastal waters. These results give credence to the idea that marine and freshwater environments respond in a similar fashion to nutrient enrichment., Une comparaison inter-sites des concentrations de nutriments et de chlorophylle a (Chl a) issues de 20 lagunes de Mediterranee francaise de degres divers d'eutrophisation a ete menee afin de rechercher la meilleure variable expliquant le niveau de Chl a et d'explorer la limitation de la production primaire par les nutriments au long d'un fort gradient d'enrichissement en azote et phosphore. En ete, l'azote et le phosphore inorganiques dissous (DIN et PID respectivement) constituaient une faible fraction des concentrations d'azote et de phosphore totaux (TN et TP respectivement). Sur la base des concentrations en nutriments inorganiques, la plupart des lagunes oligotrophes semblaient limitees par le phosphore avec une tendance vers des rapports DIN:DIP decroissants, et donc une limitation par l'azote, lorsque l'eutrophisation augmentait. Une correlation positive mais faible a aussi ete obtenue entre les concentrations de silicates (DSi) et Chl a, indiquant une accumulation de DSi dans la colonne d'eau et donc une diminution de la limitation de la croissance du phytoplancton par la silice au fur et a mesure que l'eutrophisation augmentait. Le fait que Chl a etait beaucoup mieux expliquee par TN et TP que par DIN et DIP suggere meme que l'approche limnologique basee sur l'ensemble des nutriments est vraisemblablement la meilleure pour gerer l'eutrophisation dans les lagunes mediterraneennes et dans d'autres ecosystemes marins cotiers. Ces constats renforcent l'idee que les ecosystemes marins et d'eau douce repondent de facon similaire a l'enrichissement en nutriments.

In order to better understand environmental disturbances in the French coastal Mediterranean lagoons, we used an ecotoxicological approach based on the measurement of the toxicity of the sediments using oyster embryo bioassay that provides a basis for assessing the effects on the fauna of contaminants adsorbed on the sedimentary particles. The study covers all of the main lagoons of the French Mediterranean coasts of Languedoc Roussillon, Camargue, and Provence (Berre and Bolmon lagoons), where 188 stations were sampled. The toxicity tests provide evidence of variable levels of toxicity in sediments. Contaminated lagoons such as La peyrade, Le canet, and Ingrill and locally affected lagoons such as Bages-Sigean, Vaccares, Bolmon, and Berre have sampling stations with 100% of larval abnormalities during 24-h development. In all of the lagoons, the toxicity was mainly located close to local harbors and rivers. Salses Leucate (Languedoc roussillon) lagoon was found very clean, with no important toxicity. The results are discussed in terms of environmental disturbances of the coastal lagoons and with regard to the long-term monitoring of the impact of contaminants on the coastal environment.

Time series data have been examined in Thau lagoon (Southern France) from 1972 to 2006 for water temperature, salinity, nutrients and from 1987 to 2006 for phytoplankton. A first main trend identified is an increase in mean annual water temperature (1.5 degrees C over 33 years or 0.045 degrees C/year) that was not evenly distributed among seasons. The highest rate of increase was in the spring (+ 3.0 degrees C over 33 years), followed by summer (+ 2.0 degrees C and fall (+ 1.7 degrees C. In winter, no significant increase over the 33 year period could be found. A second clear trend is a large decrease in soluble reactive phosphorus (SRP) concentration over the same 33 year period (summer values decreased from 10 mu M to 1 mu M. while winter values decreased from 3 mu M to undetectable at present). Nitrate concentrations depended mainly on rainfall events and watershed runoff. Ammonium data were too fragmentary to be useful. N/P ratios expressed the traditional way of DIN/SRP cannot be used for phytoplankton that are not strict autotrophs. The recent and almost simultaneous appearance of both picocyanobacteria (mostly Synechococcus) and the toxic dinoflagellate Alexandrium catenella in Thau seem to be related to reduced nutrient loading and the increase in water temperature. A. catenella blooms occur either in the spring or the fall when water temperature is near 20 degrees C and remains so for several weeks with winds speeds below 2-3 m s(-1). Picocyanobacterial growth is stimulated by increased summer temperatures, and lowered SRP levels provide picocyanobacteria an ecological advantage over other phytoplankton classes, in particular diatoms such as Skeletonema costatum whose cell densities have decreased over the last 8 years in summer and fall, but not in winter. An hypothesis is presented according to which A. catenella is not stimulated by increased temperatures, but is able to use picocyanobacteria for growth, and this provides this organism an additional resource over other strictly autotrophic phytoplankton. On a more general level, our data do not support the hypothesis that increased nutrient loading leads to harmful blooms of dinoflagellates. Instead, a combination of habitat disturbance and species displacement seems to lead to such blooms. (C) 2008 Elsevier B.V. All rights reserved.

Ambient concentrations, congener patterns and multi-media distribution of PCDD/Fs and PCBs were determined in air, water, sediment and mussels in a semi-enclosed marine ecosystem (Thau lagoon, France). Sigma 2,3,7,8-PCDD/F and Sigma 7ICES PCB air concentrations (0.2-1.4 and 31-57 pg m(-3), respectively) were typical of rural areas. Concentrations in the water column were very low for PCDD/Fs (163-476 fg L-1) and low for PCBs (138-708 pg L-1). PCDD/F and PCB concentrations found in surface sediment (0.15-1.6 and 2.5-33 ng g(-1) d.w., respectively) and mussel (13-21 pg g(-1) d.w. and 10-39 ng g(-1) d.w., respectively) were medium levels. PCDD/F congener patterns observed in air, water particulate phase and sediments were similar suggesting direct coupling among these compartments and atmospheric inputs of PCDD/Fs into the lagoon. Conversely, for the same set of samples, similar patterns were not observed for PCBs in the mentioned compartments. (C) 2007 Elsevier Ltd. All rights reserved.

A monitoring program with a weekly sampling frequency over a 15-month period indicates that urea concentrations above a certain threshold level may trigger the blooms of Alexandrium catenella in Thau lagoon. However, urea concentrations were also sometimes related to ammonium and dissolved organic nitrogen concentrations, indicating that the role of urea may not be a direct one. An original approach is used to assess the relative contribution of several nitrogen sources (nitrate, nitrite, ammonium, urea) to growth of A. catenella by comparing nitrogen uptake rates to nitrogen-based growth rates estimated from dilution experiments during four blooms over a 4-year period (2001-2004) in Thau lagoon. Nitrate and nitrite contributed 0.1-14% and 0.1-5% respectively of growth requirements. Ammonium and urea were the main N sources fueling growth of A. catenella (30-100% and 2-59%, respectively). Indirect estimates indicated that an unidentified N source could also contribute significantly to growth at specific times. Concerning ammonium and urea uptake kinetics, half-saturation constants varied between 0.2 and 20 mu gat NL-1 for ammonium and between 0.1 and 44 mu gat N L-1 over the 4-year period, indicating that A. catenella can have a competitive advantage over other members of the phytoplankton even under low concentrations of ammonium and urea. However, the observed large changes in ammonium and urea uptake kinetics on a short time scale (days) during blooms preclude more precise estimates of those contributions to growth and require further investigation. (C) 2007 Elsevier B.V. All rights reserved.