1. Automated Macro Approach to Remove Vitelline Membrane Autofluorescence in Drosophila Embryo 4D Movies.
- Author
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Boix-Fabrés J, Karkali K, Martín-Blanco E, and Rebollo E
- Subjects
- Animals, Animals, Genetically Modified, Artifacts, Drosophila embryology, Drosophila Proteins chemistry, Drosophila Proteins genetics, Embryonic Development, Fluorescence, Green Fluorescent Proteins chemistry, Green Fluorescent Proteins genetics, Imaging, Three-Dimensional instrumentation, Intravital Microscopy instrumentation, Microscopy, Fluorescence instrumentation, Microscopy, Fluorescence methods, Video Recording instrumentation, Video Recording methods, Vitelline Membrane chemistry, Vitelline Membrane embryology, Embryo, Nonmammalian diagnostic imaging, Imaging, Three-Dimensional methods, Intravital Microscopy methods, Vitelline Membrane diagnostic imaging
- Abstract
This chapter provides an ImageJ/Fiji automated macro approach to remove the vitelline membrane autofluorescence in live Drosophila embryo movies acquired in a 4D (3D plus time) fashion. The procedure consists in a segmentation pipeline that can cope with different relative intensities of the vitelline membrane autofluorescence, followed by a developed algorithm that adjusts the extracted outline selection to the shape deformations that naturally occur during Drosophila embryo development. Finally, the fitted selection is used to clear the external glowing halo that, otherwise, would obscure the visualization of the internal embryo labeling upon projection or 3D rendering.
- Published
- 2019
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