363 results on '"Waterman MR"'
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2. CANADIAN MENNONITES AND INDIVIDUALS RESIDING IN THE FRIESLAND REGION OF THE NETHERLANDS SHARE THE SAME MOLECULAR-BASIS OF 17-ALPHA-HYDROXYLASE DEFICIENCY
- Author
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IMAI, T, YANASE, T, WATERMAN, MR, SIMPSON, ER, PRATT, JJ, and Faculteit Medische Wetenschappen/UMCG
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GENES ,AMPLIFICATION ,DNA ,POLYMERASE CHAIN-REACTION - Abstract
A common mutation within the CYP17 gene that causes 17-alpha-hydroxylase deficiency, a form of congenital adrenal hyperplasia, has been found by direct sequencing of polymerase chain reaction (PCR) fragments of genomic DNA from six families residing in the Friesland region of the Netherlands. The mutation is a 4-base duplication within exon 8 of the CYPI7 gene, which alters the reading frame encoding the C-terminal 26 amino acids of cytochrome P45017-alpha. This mutation has previously been found in two Canadian patients who are members of ostensibly unrelated Mennonite families. The Mennonite Churches derive their name from Menno Simons, an early leader of the sect in Friesland. Presumably this 4-base duplication appeared within the Friesian population prior to emigration of the Mennonites from the Netherlands.
- Published
- 1992
3. Functional variant of CYP4A11 20-hydroxyeicosatetraenoic acid synthase is associated with essential hypertension.
- Author
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Gainer JV, Bellamine A, Dawson EP, Womble KE, Grant SW, Wang Y, Cupples LA, Guo C, Demissie S, O'Donnell CJ, Brown NJ, Waterman MR, Capdevila JH, Gainer, James V, Bellamine, Aouatef, Dawson, Elliott P, Womble, Kristie E, Grant, Sarah W, Wang, Yarong, and Cupples, L Adrienne
- Published
- 2005
4. Concerning P450 Evolution: Structural Analyses Support Bacterial Origin of Sterol 14α-Demethylases.
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Lamb DC, Hargrove TY, Zhao B, Wawrzak Z, Goldstone JV, Nes WD, Kelly SL, Waterman MR, Stegeman JJ, and Lepesheva GI
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- Animals, Humans, Methylococcus capsulatus enzymology, Protein Conformation, Sterol 14-Demethylase chemistry, Evolution, Molecular, Methylococcus capsulatus genetics, Sterol 14-Demethylase genetics
- Abstract
Sterol biosynthesis, primarily associated with eukaryotic kingdoms of life, occurs as an abbreviated pathway in the bacterium Methylococcus capsulatus. Sterol 14α-demethylation is an essential step in this pathway and is catalyzed by cytochrome P450 51 (CYP51). In M. capsulatus, the enzyme consists of the P450 domain naturally fused to a ferredoxin domain at the C-terminus (CYP51fx). The structure of M. capsulatus CYP51fx was solved to 2.7 Å resolution and is the first structure of a bacterial sterol biosynthetic enzyme. The structure contained one P450 molecule per asymmetric unit with no electron density seen for ferredoxin. We connect this with the requirement of P450 substrate binding in order to activate productive ferredoxin binding. Further, the structure of the P450 domain with bound detergent (which replaced the substrate upon crystallization) was solved to 2.4 Å resolution. Comparison of these two structures to the CYP51s from human, fungi, and protozoa reveals strict conservation of the overall protein architecture. However, the structure of an "orphan" P450 from nonsterol-producing Mycobacterium tuberculosis that also has CYP51 activity reveals marked differences, suggesting that loss of function in vivo might have led to alterations in the structural constraints. Our results are consistent with the idea that eukaryotic and bacterial CYP51s evolved from a common cenancestor and that early eukaryotes may have recruited CYP51 from a bacterial source. The idea is supported by bioinformatic analysis, revealing the presence of CYP51 genes in >1,000 bacteria from nine different phyla, >50 of them being natural CYP51fx fusion proteins., (© The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.)
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- 2021
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5. Binding of a physiological substrate causes large-scale conformational reorganization in cytochrome P450 51.
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Hargrove TY, Wawrzak Z, Fisher PM, Child SA, Nes WD, Guengerich FP, Waterman MR, and Lepesheva GI
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- Biocatalysis, Electron Transport, Enzyme Stability, Heme metabolism, Models, Molecular, Protein Binding, Protein Conformation, Trypanosoma cruzi enzymology, Sterol 14-Demethylase chemistry, Sterol 14-Demethylase metabolism
- Abstract
Sterol 14α-demethylases (CYP51s) are phylogenetically the most conserved cytochromes P450, and their three-step reaction is crucial for biosynthesis of sterols and serves as a leading target for clinical and agricultural antifungal agents. The structures of several (bacterial, protozoan, fungal, and human) CYP51 orthologs, in both the ligand-free and inhibitor-bound forms, have been determined and have revealed striking similarity at the secondary and tertiary structural levels, despite having low sequence identity. Moreover, in contrast to many of the substrate-promiscuous, drug-metabolizing P450s, CYP51 structures do not display substantial rearrangements in their backbones upon binding of various inhibitory ligands, essentially representing a snapshot of the ligand-free sterol 14α-demethylase. Here, using the obtusifoliol-bound I105F variant of Trypanosoma cruzi CYP51, we report that formation of the catalytically competent complex with the physiological substrate triggers a large-scale conformational switch, dramatically reshaping the enzyme active site (3.5-6.0 Å movements in the FG arm, HI arm, and helix C) in the direction of catalysis. Notably, our X-ray structural analyses revealed that the substrate channel closes, the proton delivery route opens, and the topology and electrostatic potential of the proximal surface reorganize to favor interaction with the electron-donating flavoprotein partner, NADPH-cytochrome P450 reductase. Site-directed mutagenesis of the amino acid residues involved in these events revealed a key role of active-site salt bridges in contributing to the structural dynamics that accompanies CYP51 function. Comparative analysis of apo-CYP51 and its sterol-bound complex provided key conceptual insights into the molecular mechanisms of CYP51 catalysis, functional conservation, lineage-specific substrate complementarity, and druggability differences., (© 2018 Hargrove et al.)
- Published
- 2018
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6. CYP51 as drug targets for fungi and protozoan parasites: past, present and future.
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Lepesheva GI, Friggeri L, and Waterman MR
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- Animals, Antifungal Agents pharmacology, Fungemia drug therapy, Fungemia mortality, Humans, Models, Molecular, Protein Binding, Substrate Specificity, Trypanosoma brucei brucei drug effects, Trypanosoma cruzi drug effects, 14-alpha Demethylase Inhibitors therapeutic use, Cytochrome P450 Family 51 antagonists & inhibitors, Fungi drug effects, Parasites drug effects
- Abstract
The efficiency of treatment of human infections with the unicellular eukaryotic pathogens such as fungi and protozoa remains deeply unsatisfactory. For example, the mortality rates from nosocomial fungemia in critically ill, immunosuppressed or post-cancer patients often exceed 50%. A set of six systemic clinical azoles [sterol 14α-demethylase (CYP51) inhibitors] represents the first-line antifungal treatment. All these drugs were discovered empirically, by monitoring their effects on fungal cell growth, though it had been proven that they kill fungal cells by blocking the biosynthesis of ergosterol in fungi at the stage of 14α-demethylation of the sterol nucleus. This review briefs the history of antifungal azoles, outlines the situation with the current clinical azole-based drugs, describes the attempts of their repurposing for treatment of human infections with the protozoan parasites that, similar to fungi, also produce endogenous sterols, and discusses the most recently acquired knowledge on the CYP51 structure/function and inhibition. It is our belief that this information should be helpful in shifting from the traditional phenotypic screening to the actual target-driven drug discovery paradigm, which will rationalize and substantially accelerate the development of new, more efficient and pathogen-oriented CYP51 inhibitors.
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- 2018
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7. Functional analysis of human cytochrome P450 21A2 variants involved in congenital adrenal hyperplasia.
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Wang C, Pallan PS, Zhang W, Lei L, Yoshimoto FK, Waterman MR, Egli M, and Guengerich FP
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- Adrenal Hyperplasia, Congenital genetics, Circular Dichroism, Cytochromes b5 chemistry, Cytochromes b5 genetics, Cytochromes b5 metabolism, Deuterium Exchange Measurement, Enzyme Stability, Hot Temperature, Humans, Protein Domains, Spectrophotometry, Ultraviolet, Steroid 21-Hydroxylase genetics, Steroid 21-Hydroxylase metabolism, Adrenal Hyperplasia, Congenital enzymology, Mutation, Steroid 21-Hydroxylase chemistry
- Abstract
Cytochrome P450 (P450, CYP) 21A2 is the major steroid 21-hydroxylase, converting progesterone to 11-deoxycorticosterone and 17α-hydroxyprogesterone (17α-OH-progesterone) to 11-deoxycortisol. More than 100 CYP21A2 variants give rise to congenital adrenal hyperplasia (CAH). We previously reported a structure of WT human P450 21A2 with bound progesterone and now present a structure bound to the other substrate (17α-OH-progesterone). We found that the 17α-OH-progesterone- and progesterone-bound complex structures are highly similar, with only some minor differences in surface loop regions. Twelve P450 21A2 variants associated with either salt-wasting or nonclassical forms of CAH were expressed, purified, and analyzed. The catalytic activities of these 12 variants ranged from 0.00009% to 30% of WT P450 21A2 and the extent of heme incorporation from 10% to 95% of the WT. Substrate dissociation constants ( K
s ) for four variants were 37-13,000-fold higher than for WT P450 21A2. Cytochrome b5 , which augments several P450 activities, inhibited P450 21A2 activity. Similar to the WT enzyme, high noncompetitive intermolecular kinetic deuterium isotope effects (≥ 5.5) were observed for all six P450 21A2 variants examined for 21-hydroxylation of 21- d3 -progesterone, indicating that C-H bond breaking is a rate-limiting step over a 104 -fold range of catalytic efficiency. Using UV-visible and CD spectroscopy, we found that P450 21A2 thermal stability assessed in bacterial cells and with purified enzymes differed among salt-wasting- and nonclassical-associated variants, but these differences did not correlate with catalytic activity. Our in-depth investigation of CAH-associated P450 21A2 variants reveals critical insight into the effects of disease-causing mutations on this important enzyme., (© 2017 by The American Society for Biochemistry and Molecular Biology, Inc.)- Published
- 2017
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8. Human sterol 14α-demethylase as a target for anticancer chemotherapy: towards structure-aided drug design.
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Hargrove TY, Friggeri L, Wawrzak Z, Sivakumaran S, Yazlovitskaya EM, Hiebert SW, Guengerich FP, Waterman MR, and Lepesheva GI
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- Antifungal Agents, Antiprotozoal Agents chemistry, Catalytic Domain, Cell Line, Tumor, Cholestadienols chemistry, Crystallography, X-Ray, Drug Design, Drug Screening Assays, Antitumor, Humans, Hydrogen Bonding, Lanosterol chemistry, Models, Molecular, Protein Binding, Protein Conformation, alpha-Helical, 14-alpha Demethylase Inhibitors chemistry, Antineoplastic Agents chemistry, Sterol 14-Demethylase chemistry
- Abstract
Rapidly multiplying cancer cells synthesize greater amounts of cholesterol to build their membranes. Cholesterol-lowering drugs (statins) are currently in clinical trials for anticancer chemotherapy. However, given at higher doses, statins cause serious side effects by inhibiting the formation of other biologically important molecules derived from mevalonate. Sterol 14α-demethylase (CYP51), which acts 10 steps downstream, is potentially a more specific drug target because this portion of the pathway is fully committed to cholesterol production. However, screening a variety of commercial and experimental inhibitors of microbial CYP51 orthologs revealed that most of them (including all clinical antifungals) weakly inhibit human CYP51 activity, even if they display high apparent spectral binding affinity. Only one relatively potent compound, (R)-N-(1-(3,4'-difluorobiphenyl-4-yl)-2-(1H-imidazol-1-yl)ethyl)-4-(5-phenyl-1,3,4-oxadiazol-2-yl)benzamide (VFV), was identified. VFV has been further tested in cellular experiments and found to decrease proliferation of different cancer cell types. The crystal structures of human CYP51-VFV complexes (2.0 and 2.5 Å) both display a 2:1 inhibitor/enzyme stoichiometry, provide molecular insights regarding a broader substrate profile, faster catalysis, and weaker susceptibility of human CYP51 to inhibition, and outline directions for the development of more potent inhibitors., (Copyright © 2016 by the American Society for Biochemistry and Molecular Biology, Inc.)
- Published
- 2016
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9. Recent Structural Insights into Cytochrome P450 Function.
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Guengerich FP, Waterman MR, and Egli M
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- Humans, Models, Molecular, Pharmacokinetics, Structure-Activity Relationship, Cytochrome P-450 Enzyme System chemistry, Cytochrome P-450 Enzyme System metabolism, Pharmaceutical Preparations metabolism
- Abstract
Cytochrome P450 (P450) enzymes are important in the metabolism of drugs, steroids, fat-soluble vitamins, carcinogens, pesticides, and many other types of chemicals. Their catalytic activities are important issues in areas such as drug-drug interactions and endocrine function. During the past 30 years, structures of P450s have been very helpful in understanding function, particularly the mammalian P450 structures available in the past 15 years. We review recent activity in this area, focusing on the past 2 years (2014-2015). Structural work with microbial P450s includes studies related to the biosynthesis of natural products and the use of parasitic and fungal P450 structures as targets for drug discovery. Studies on mammalian P450s include the utilization of information about 'drug-metabolizing' P450s to improve drug development and also to understand the molecular bases of endocrine dysfunction., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2016
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10. Genetic and structural analyses of cytochrome P450 hydroxylases in sex hormone biosynthesis: Sequential origin and subsequent coevolution.
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Goldstone JV, Sundaramoorthy M, Zhao B, Waterman MR, Stegeman JJ, and Lamb DC
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- Amino Acid Sequence, Animals, Binding Sites genetics, Humans, Likelihood Functions, Biological Evolution, Chordata genetics, Gonadal Steroid Hormones biosynthesis, Phylogeny, Steroid Hydroxylases chemistry, Steroid Hydroxylases genetics
- Abstract
Biosynthesis of steroid hormones in vertebrates involves three cytochrome P450 hydroxylases, CYP11A1, CYP17A1 and CYP19A1, which catalyze sequential steps in steroidogenesis. These enzymes are conserved in the vertebrates, but their origin and existence in other chordate subphyla (Tunicata and Cephalochordata) have not been clearly established. In this study, selected protein sequences of CYP11A1, CYP17A1 and CYP19A1 were compiled and analyzed using multiple sequence alignment and phylogenetic analysis. Our analyses show that cephalochordates have sequences orthologous to vertebrate CYP11A1, CYP17A1 or CYP19A1, and that echinoderms and hemichordates possess CYP11-like but not CYP19 genes. While the cephalochordate sequences have low identity with the vertebrate sequences, reflecting evolutionary distance, the data show apparent origin of CYP11 prior to the evolution of CYP19 and possibly CYP17, thus indicating a sequential origin of these functionally related steroidogenic CYPs. Co-occurrence of the three CYPs in early chordates suggests that the three genes may have coevolved thereafter, and that functional conservation should be reflected in functionally important residues in the proteins. CYP19A1 has the largest number of conserved residues while CYP11A1 sequences are less conserved. Structural analyses of human CYP11A1, CYP17A1 and CYP19A1 show that critical substrate binding site residues are highly conserved in each enzyme family. The results emphasize that the steroidogenic pathways producing glucocorticoids and reproductive steroids are several hundred million years old and that the catalytic structural elements of the enzymes have been conserved over the same period of time. Analysis of these elements may help to identify when precursor functions linked to these enzymes first arose., (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Published
- 2016
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11. VFV as a New Effective CYP51 Structure-Derived Drug Candidate for Chagas Disease and Visceral Leishmaniasis.
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Lepesheva GI, Hargrove TY, Rachakonda G, Wawrzak Z, Pomel S, Cojean S, Nde PN, Nes WD, Locuson CW, Calcutt MW, Waterman MR, Daniels JS, Loiseau PM, and Villalta F
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- Animals, Antiprotozoal Agents pharmacokinetics, Benzamides pharmacokinetics, Biotransformation, Cytochrome P-450 Enzyme Inhibitors pharmacokinetics, Disease Models, Animal, Female, Humans, Imidazoles pharmacology, Inhibitory Concentration 50, Mice, Mice, Inbred BALB C, Microsomes, Liver drug effects, Molecular Structure, Oxadiazoles pharmacokinetics, Rats, Structure-Activity Relationship, Tissue Distribution, Trypanosoma cruzi drug effects, Antiprotozoal Agents pharmacology, Benzamides pharmacology, Chagas Disease drug therapy, Cytochrome P-450 Enzyme Inhibitors pharmacology, Cytochrome P-450 Enzyme System chemistry, Leishmaniasis, Visceral drug therapy, Oxadiazoles pharmacology
- Abstract
Sterol 14α-demethylases (CYP51) are the enzymes essential for sterol biosynthesis. They serve as clinical targets for antifungal azoles and are considered as targets for treatment of human Trypanosomatidae infections. Recently, we have shown that VNI, a potent and selective inhibitor of trypanosomal CYP51 that we identified and structurally characterized in complex with the enzyme, can cure the acute and chronic forms of Chagas disease. The purpose of this work was to apply the CYP51 structure/function for further development of the VNI scaffold. As anticipated, VFV (R)-N-(1-(3,4'-difluorobiphenyl-4-yl)-2-(1H-imidazol-1-yl)ethyl)-4-(5-phenyl-1,3,4-oxadiazol-2-yl)benzamide, the derivative designed to fill the deepest portion of the CYP51 substrate-binding cavity, reveals a broader antiprotozoan spectrum of action. It has stronger antiparasitic activity in cellular experiments, cures the experimental Chagas disease with 100% efficacy, and suppresses visceral leishmaniasis by 89% (vs 60% for VNI). Oral bioavailability, low off-target activity, favorable pharmacokinetics and tissue distribution characterize VFV as a promising new drug candidate., (© The Author 2015. Published by Oxford University Press on behalf of the Infectious Diseases Society of America. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2015
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12. Research Resource: Correlating Human Cytochrome P450 21A2 Crystal Structure and Phenotypes of Mutations in Congenital Adrenal Hyperplasia.
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Pallan PS, Lei L, Wang C, Waterman MR, Guengerich FP, and Egli M
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- Crystallography, X-Ray, Humans, Mutation genetics, Progesterone metabolism, Protein Folding, Steroid 21-Hydroxylase metabolism, Structure-Activity Relationship, Adrenal Hyperplasia, Congenital genetics, Steroid 21-Hydroxylase chemistry, Steroid 21-Hydroxylase genetics
- Abstract
Cytochrome P450 21A2 is a key player in steroid 21-hydroxylation and converts progesterone to 11-deoxycorticosterone and 17α-hydroxy progesterone to 11-deoxycortisol. More than 100 mutations in P450 21A2 have been established in patients thus far; these account for the vast majority of occurrences of congenital adrenal hyperplasia (CAH), which is among the most common heritable metabolic diseases in humans. CAH phenotypes range from the most severe, salt-wasting (SW), to the simple virilizing (SV), and nonclassical (NC) CAH forms. We recently determined the crystal structure of human P450 21A2 in complex with progesterone. To gain more insight into the structural and stability changes underlying the phenotypes of individual mutations, we analyzed 24 SW, SV, and NC mutants in the context of the crystal structure of the human enzyme. Our analysis reveals clear differences in the localization of SW, SV, and NC mutations, with many of the first type mapping to the active site and near the heme and/or substrate and mostly resulting in complete loss of enzyme activity. Conversely, NC mutations are often found near the periphery and close to the surface of the protein, and mutant enzymes retain partial activity. The main conclusion from the mutation-structure-activity study is that the severity of the CAH clinical manifestations can be directly correlated with the degree of mutation-induced damage in terms of protein fold stability and active site changes in the structural model. Thus, the NC phenotype is typically associated with mutations that have a compensatory effect, ie, H-bonding replacing hydrophobic interactions and vice versa.
- Published
- 2015
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13. Human Cytochrome P450 21A2, the Major Steroid 21-Hydroxylase: STRUCTURE OF THE ENZYME·PROGESTERONE SUBSTRATE COMPLEX AND RATE-LIMITING C-H BOND CLEAVAGE.
- Author
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Pallan PS, Wang C, Lei L, Yoshimoto FK, Auchus RJ, Waterman MR, Guengerich FP, and Egli M
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- Amino Acid Sequence, Animals, Binding Sites, Catalysis, Catalytic Domain, Cattle, Crystallography, X-Ray, Deuterium chemistry, Humans, Hydroxylation, Kinetics, Molecular Sequence Data, Oxidation-Reduction, Protein Binding, Protein Conformation, Sequence Homology, Amino Acid, Substrate Specificity, Progesterone chemistry, Progesterone metabolism, Steroid 21-Hydroxylase chemistry, Steroid 21-Hydroxylase metabolism
- Abstract
Cytochrome P450 (P450) 21A2 is the major steroid 21-hydroxylase, and deficiency of this enzyme is involved in ∼95% of cases of human congenital adrenal hyperplasia, a disorder of adrenal steroidogenesis. A structure of the bovine enzyme that we published previously (Zhao, B., Lei, L., Kagawa, N., Sundaramoorthy, M., Banerjee, S., Nagy, L. D., Guengerich, F. P., and Waterman, M. R. (2012) Three-dimensional structure of steroid 21-hydroxylase (cytochrome P450 21A2) with two substrates reveals locations of disease-associated variants. J. Biol. Chem. 287, 10613-10622), containing two molecules of the substrate 17α-hydroxyprogesterone, has been used as a template for understanding genetic deficiencies. We have now obtained a crystal structure of human P450 21A2 in complex with progesterone, a substrate in adrenal 21-hydroxylation. Substrate binding and release were fast for human P450 21A2 with both substrates, and pre-steady-state kinetics showed a partial burst but only with progesterone as substrate and not 17α-hydroxyprogesterone. High intermolecular non-competitive kinetic deuterium isotope effects on both kcat and kcat/Km, from 5 to 11, were observed with both substrates, indicative of rate-limiting C-H bond cleavage and suggesting that the juxtaposition of the C21 carbon in the active site is critical for efficient oxidation. The estimated rate of binding of the substrate progesterone (kon 2.4 × 10(7) M(-1) s(-1)) is only ∼2-fold greater than the catalytic efficiency (kcat/Km = 1.3 × 10(7) M(-1) s(-1)) with this substrate, suggesting that the rate of substrate binding may also be partially rate-limiting. The structure of the human P450 21A2-substrate complex provides direct insight into mechanistic effects of genetic variants., (© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.)
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- 2015
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14. Structural and kinetic basis of steroid 17α,20-lyase activity in teleost fish cytochrome P450 17A1 and its absence in cytochrome P450 17A2.
- Author
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Pallan PS, Nagy LD, Lei L, Gonzalez E, Kramlinger VM, Azumaya CM, Wawrzak Z, Waterman MR, Guengerich FP, and Egli M
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- Amino Acid Sequence, Androstenes pharmacology, Animals, Kinetics, Molecular Docking Simulation, Molecular Sequence Data, Progesterone pharmacology, Protein Binding, Steroid 17-alpha-Hydroxylase antagonists & inhibitors, Steroid 17-alpha-Hydroxylase metabolism, Zebrafish, Zebrafish Proteins antagonists & inhibitors, Zebrafish Proteins metabolism, Catalytic Domain, Steroid 17-alpha-Hydroxylase chemistry, Zebrafish Proteins chemistry
- Abstract
Cytochrome P450 (P450) 17A enzymes play a critical role in the oxidation of the steroids progesterone (Prog) and pregnenolone (Preg) to glucocorticoids and androgens. In mammals, a single enzyme, P450 17A1, catalyzes both 17α-hydroxylation and a subsequent 17α,20-lyase reaction with both Prog and Preg. Teleost fish contain two 17A P450s; zebrafish P450 17A1 catalyzes both 17α-hydroxylation and lyase reactions with Prog and Preg, and P450 17A2 is more efficient in pregnenolone 17α-hydroxylation but does not catalyze the lyase reaction, even in the presence of cytochrome b5. P450 17A2 binds all substrates and products, although more loosely than P450 17A1. Pulse-chase and kinetic spectral experiments and modeling established that the two-step P450 17A1 Prog oxidation is more distributive than the Preg reaction, i.e. 17α-OH product dissociates more prior to the lyase step. The drug orteronel selectively blocked the lyase reaction of P450 17A1 but only in the case of Prog. X-ray crystal structures of zebrafish P450 17A1 and 17A2 were obtained with the ligand abiraterone and with Prog for P450 17A2. Comparison of the two fish P450 17A-abiraterone structures with human P450 17A1 (DeVore, N. M., and Scott, E. E. (2013) Nature 482, 116-119) showed only a few differences near the active site, despite only ∼50% identity among the three proteins. The P450 17A2 structure differed in four residues near the heme periphery. These residues may allow the proposed alternative ferric peroxide mechanism for the lyase reaction, or residues removed from the active site may allow conformations that lead to the lyase activity., (© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.)
- Published
- 2015
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15. Utilization of a free fitness center-based exercise referral program among women with chronic disease risk factors.
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Waterman MR, Wiecha JM, Manne J, Tringale SM, Costa E, and Wiecha JL
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- Adult, Community Health Services, Female, Fitness Centers economics, Health Behavior, Humans, Middle Aged, Patient Compliance, Risk Factors, Chronic Disease, Exercise, Fitness Centers statistics & numerical data, Referral and Consultation
- Abstract
Physical activity (PA) reduces the risk for a number of chronic diseases including heart disease, hypertension, hyperlipidemia, and diabetes mellitus type 2. However, most Americans do not meet expert recommendations for exercise, and minorities and low-income persons are the most inactive. Community-based approaches to promoting PA include primary care exercise referral programs. This study examines patient characteristics associated with utilization of a community health center-based exercise referral program. Adult female patients of a community health center with an affiliated fitness center, in Boston, MA, were included in the study if they received a referral to the fitness center from their primary care provider. Demographic and medical information was abstracted from the medical chart, and fitness records were abstracted to measure activation of a fitness center membership (creation of an account denoting at least an initial visit) and utilization over time. Overall, 503 (40%) of the 1,254 referred women in the study sample activated their membership. Black women were almost 60% more likely to activate their membership (adjusted OR 1.6, 95% CI 1.2-2.2), and women with higher co-morbidity counts were almost 45% more likely to activate (adjusted OR 1.4, 95% CI 1.0-2.0). Once activated, a minority of women participated at levels likely to improve cardiometabolic fitness. Of the 503 activations, 96 (19%) had no participation, 359 (71%) had low participation, and only 48 (10%) had high participation. No independent predictors of participation were identified. These findings suggest that program design may benefit from developing activation, initial participation, and retention strategies that address population-specific barriers.
- Published
- 2014
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16. Structural basis for rational design of inhibitors targeting Trypanosoma cruzi sterol 14α-demethylase: two regions of the enzyme molecule potentiate its inhibition.
- Author
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Friggeri L, Hargrove TY, Rachakonda G, Williams AD, Wawrzak Z, Di Santo R, De Vita D, Waterman MR, Tortorella S, Villalta F, and Lepesheva GI
- Subjects
- 14-alpha Demethylase Inhibitors chemical synthesis, 14-alpha Demethylase Inhibitors pharmacology, Carbamates chemical synthesis, Carbamates pharmacology, Crystallography, X-Ray, Drug Design, Imidazoles chemical synthesis, Imidazoles pharmacology, Models, Molecular, Protein Binding, Protein Conformation, Stereoisomerism, Sterol 14-Demethylase chemistry, Trypanocidal Agents chemical synthesis, Trypanocidal Agents pharmacology, Trypanosoma cruzi drug effects, 14-alpha Demethylase Inhibitors chemistry, Carbamates chemistry, Imidazoles chemistry, Sterol 14-Demethylase metabolism, Trypanocidal Agents chemistry, Trypanosoma cruzi enzymology
- Abstract
Chagas disease, which was once thought to be confined to endemic regions of Latin America, has now gone global, becoming a new worldwide challenge with no cure available. The disease is caused by the protozoan parasite Trypanosoma cruzi, which depends on the production of endogenous sterols, and therefore can be blocked by sterol 14α-demethylase (CYP51) inhibitors. Here we explore the spectral binding parameters, inhibitory effects on T. cruzi CYP51 activity, and antiparasitic potencies of a new set of β-phenyl imidazoles. Comparative structural characterization of the T. cruzi CYP51 complexes with the three most potent inhibitors reveals two opposite binding modes of the compounds ((R)-6, EC50=1.2 nM, vs (S)-2/(S)-3, EC50=1.0/5.5 nM) and suggests the entrance into the CYP51 substrate access channel and the heme propionate-supporting ceiling of the binding cavity as two distinct areas of the protein that enhance molecular recognition and therefore could be used for the development of more effective antiparasitic drugs.
- Published
- 2014
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17. Complexes of Trypanosoma cruzi sterol 14α-demethylase (CYP51) with two pyridine-based drug candidates for Chagas disease: structural basis for pathogen selectivity.
- Author
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Hargrove TY, Wawrzak Z, Alexander PW, Chaplin JH, Keenan M, Charman SA, Perez CJ, Waterman MR, Chatelain E, and Lepesheva GI
- Subjects
- 14-alpha Demethylase Inhibitors therapeutic use, Antiprotozoal Agents therapeutic use, Chagas Disease drug therapy, Chagas Disease genetics, Crystallography, X-Ray, Humans, Protozoan Proteins genetics, Protozoan Proteins metabolism, Sterol 14-Demethylase genetics, Sterol 14-Demethylase metabolism, Thiazoles chemistry, Triazoles chemistry, Trypanosoma cruzi genetics, 14-alpha Demethylase Inhibitors chemistry, Antiprotozoal Agents chemistry, Chagas Disease enzymology, Protozoan Proteins antagonists & inhibitors, Protozoan Proteins chemistry, Sterol 14-Demethylase chemistry, Trypanosoma cruzi enzymology
- Abstract
Chagas disease, caused by the eukaryotic (protozoan) parasite Trypanosoma cruzi, is an alarming emerging global health problem with no clinical drugs available to treat the chronic stage. Azole inhibitors of sterol 14α-demethylase (CYP51) were proven effective against Chagas, and antifungal drugs posaconazole and ravuconazole have entered clinical trials in Spain, Bolivia, and Argentina. Here we present the x-ray structures of T. cruzi CYP51 in complexes with two alternative drug candidates, pyridine derivatives (S)-(4-chlorophenyl)-1-(4-(4-(trifluoromethyl)phenyl)-piperazin-1-yl)-2-(pyridin-3-yl)ethanone (UDO; Protein Data Bank code 3ZG2) and N-[4-(trifluoromethyl)phenyl]-N-[1-[5-(trifluoromethyl)-2-pyridyl]-4-piperi-dyl]pyridin-3-amine (UDD; Protein Data Bank code 3ZG3). These compounds have been developed by the Drugs for Neglected Diseases initiative (DNDi) and are highly promising antichagasic agents in both cellular and in vivo experiments. The binding parameters and inhibitory effects on sterol 14α-demethylase activity in reconstituted enzyme reactions confirmed UDO and UDD as potent and selective T. cruzi CYP51 inhibitors. Comparative analysis of the pyridine- and azole-bound CYP51 structures uncovered the features that make UDO and UDD T. cruzi CYP51-specific. The structures suggest that although a precise fit between the shape of the inhibitor molecules and T. cruzi CYP51 active site topology underlies their high inhibitory potency, a longer coordination bond between the catalytic heme iron and the pyridine nitrogen implies a weaker influence of pyridines on the iron reduction potential, which may be the basis for the observed selectivity of these compounds toward the target enzyme versus other cytochrome P450s, including human drug-metabolizing P450s. These findings may pave the way for the development of novel CYP51-targeted drugs with optimized metabolic properties that are very much needed for the treatment of human infections caused by eukaryotic microbial pathogens.
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- 2013
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18. Streptomyces cytochromes P450: applications in drug metabolism.
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Lamb DC, Waterman MR, and Zhao B
- Subjects
- Biotransformation, Drug Evaluation, Preclinical, Drug-Related Side Effects and Adverse Reactions, Genomics, Humans, Xenobiotics pharmacokinetics, Cytochrome P-450 Enzyme System metabolism, Inactivation, Metabolic, Streptomyces enzymology
- Abstract
Introduction: The biotransformation of drugs is critical in assessing safety and efficacy prior to human use. Cytochrome P450 (CYP; P450) enzymes are major enzymes involved in drug metabolism and bioactivation. In general, animal model systems are widely used to evaluate drug candidate toxicity and metabolism. Streptomyces strains have also been used for the metabolism of drugs screening prior to use in human medicine., Areas Covered: Utilizing Streptomyces P450s uncovered by genomics to generate drug metabolites represents an additional practical means of new drug screening approach. Now, in the first such review since the advent of the post-genomic era, the authors provide an update on the present knowledge concerning the application of the Streptomyces species and associated P450s with their role(s) in drug metabolism., Expert Opinion: Currently traditional biochemical methodology, such as chemical screening to identify substrates using purified enzymes, is still required for successful drug development. Nevertheless, the ability of the Streptomyces species, and their associated P450 enzymes, has shown promise for drug development because of their ability to mimic human drug-metabolizing P450. Furthermore, it should be pointed out that the metabolism of drug candidates with Streptomyces P450 may present a generation of novel products with totally different pharmacology with improved efficacy and pharmacokinetic profile.
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- 2013
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19. In vitro and in vivo studies of the antiparasitic activity of sterol 14α-demethylase (CYP51) inhibitor VNI against drug-resistant strains of Trypanosoma cruzi.
- Author
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Soeiro Mde N, de Souza EM, da Silva CF, Batista Dda G, Batista MM, Pavão BP, Araújo JS, Aiub CA, da Silva PB, Lionel J, Britto C, Kim K, Sulikowski G, Hargrove TY, Waterman MR, and Lepesheva GI
- Subjects
- 14-alpha Demethylase Inhibitors chemistry, Animals, Chagas Disease mortality, Chagas Disease parasitology, Drug Resistance drug effects, Endoplasmic Reticulum drug effects, Endoplasmic Reticulum ultrastructure, Golgi Apparatus drug effects, Golgi Apparatus ultrastructure, Imidazoles chemistry, Male, Mice, Microscopy, Electron, Transmission, Nitroimidazoles pharmacology, Oxadiazoles chemistry, Protozoan Proteins metabolism, Thiazoles pharmacology, Triazoles pharmacology, Trypanocidal Agents chemistry, Trypanosoma cruzi enzymology, Trypanosoma cruzi growth & development, Trypanosoma cruzi ultrastructure, 14-alpha Demethylase Inhibitors pharmacology, Chagas Disease drug therapy, Imidazoles pharmacology, Oxadiazoles pharmacology, Protozoan Proteins antagonists & inhibitors, Sterol 14-Demethylase metabolism, Trypanocidal Agents pharmacology, Trypanosoma cruzi drug effects
- Abstract
Chagas disease affects more than 10 million people worldwide, and yet, as it has historically been known as a disease of the poor, it remains highly neglected. Two currently available drugs exhibit severe toxicity and low effectiveness, especially in the chronic phase, while new drug discovery has been halted for years as a result of a lack of interest from pharmaceutical companies. Although attempts to repurpose the antifungal drugs posaconazole and ravuconazole (inhibitors of fungal sterol 14α-demethylase [CYP51]) are finally in progress, development of cheaper and more efficient, preferably Trypanosoma cruzi-specific, chemotherapies would be highly advantageous. We have recently reported that the experimental T. cruzi CYP51 inhibitor VNI cures with 100% survival and 100% parasitological clearance both acute and chronic murine infections with the Tulahuen strain of T. cruzi. In this work, we further explored the potential of VNI by assaying nitro-derivative-resistant T. cruzi strains, Y and Colombiana, in highly stringent protocols of acute infection. The data show high antiparasitic efficacy of VNI and its derivative (VNI/VNF) against both forms of T. cruzi that are relevant for mammalian host infection (bloodstream and amastigotes), with the in vivo potency, at 25 mg/kg twice a day (b.i.d.), similar to that of benznidazole (100 mg/kg/day). Transmission electron microscopy and reverse mutation tests were performed to explore cellular ultrastructural and mutagenic aspects of VNI, respectively. No mutagenic potential could be seen by the Ames test at up to 3.5 μM, and the main ultrastructural damage induced by VNI in T. cruzi was related to Golgi apparatus and endoplasmic reticulum organization, with membrane blebs presenting an autophagic phenotype. Thus, these preliminary studies confirm VNI as a very promising trypanocidal drug candidate for Chagas disease therapy.
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- 2013
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20. VNI cures acute and chronic experimental Chagas disease.
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Villalta F, Dobish MC, Nde PN, Kleshchenko YY, Hargrove TY, Johnson CA, Waterman MR, Johnston JN, and Lepesheva GI
- Subjects
- Administration, Oral, Animals, Chronic Disease, Disease Models, Animal, Enzyme Inhibitors pharmacokinetics, Female, Imidazoles pharmacokinetics, Mice, Mice, Inbred BALB C, Oxadiazoles pharmacokinetics, Survival Analysis, Treatment Outcome, Chagas Disease drug therapy, Enzyme Inhibitors administration & dosage, Imidazoles administration & dosage, Oxadiazoles administration & dosage
- Abstract
Chagas disease is a deadly infection caused by the protozoan parasite Trypanosoma cruzi. Afflicting approximately 8 million people in Latin America, Chagas disease is now becoming a serious global health problem proliferating beyond the traditional geographical borders, mainly because of human and vector migration. Because the disease is endemic in low-resource areas, industrial drug development has been lethargic. The chronic form remains incurable, there are no vaccines, and 2 existing drugs for the acute form are toxic and have low efficacy. Here we report the efficacy of a small molecule, VNI, including evidence of its effectiveness against chronic Chagas disease. VNI is a potent experimental inhibitor of T. cruzi sterol 14α-demethylase. Nontoxic and highly selective, VNI displays promising pharmacokinetics and administered orally to mice at 25 mg/kg for 30 days cures, with 100% cure rate and 100% survival, the acute and chronic T. cruzi infection.
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- 2013
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21. Cytochromes p450: roles in diseases.
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Pikuleva IA and Waterman MR
- Subjects
- Animals, Cholecalciferol metabolism, Eicosanoids biosynthesis, Humans, Metabolic Diseases genetics, Mutation, Steroids biosynthesis, Cytochrome P-450 Enzyme System physiology, Metabolic Diseases enzymology
- Abstract
The cytochrome P450 superfamily consists of a large number of heme-containing monooxygenases. Many human P450s metabolize drugs used to treat human diseases. Others are necessary for synthesis of endogenous compounds essential for human physiology. In some instances, alterations in specific P450s affect the biological processes that they mediate and lead to a disease. In this minireview, we describe medically significant human P450s (from families 2, 4, 7, 11, 17, 19, 21, 24, 27, 46, and 51) and the diseases associated with these P450s.
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- 2013
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22. Unusual properties of the cytochrome P450 superfamily.
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Lamb DC and Waterman MR
- Subjects
- Bacteria enzymology, Binding Sites, Electron Transport, Enzyme Activation, Eukaryota enzymology, Heme chemistry, Hydroxylation, Models, Molecular, Oxidation-Reduction, Oxygen chemistry, Phosphorylation, Protein Binding, Protein Structure, Tertiary, Structure-Activity Relationship, Substrate Specificity, Biological Evolution, Cytochrome P-450 Enzyme System chemistry, Protein Processing, Post-Translational
- Abstract
During the early years of cytochrome P450 research, a picture of conserved properties arose from studies of mammalian forms of these monooxygenases. They included the protohaem prosthetic group, the cysteine residue that coordinates to the haem iron and the reduced CO difference spectrum. Alternatively, the most variable feature of P450s was the enzymatic activities, which led to the conclusion that there are a large number of these enzymes, most of which have yet to be discovered. More recently, studies of these enzymes in other eukaryotes and in prokaryotes have led to the discovery of unexpected P450 properties. Many are variations of the original properties, whereas others are difficult to explain because of their unique nature relative to the rest of the known members of the superfamily. These novel properties expand our appreciation of the broad view of P450 structure and function, and generate curiosity concerning the evolution of P450s. In some cases, structural properties, previously not found in P450s, can lead to enzymatic activities impacting the biological function of organisms containing these enzymes; whereas, in other cases, the biological reason for the variations are not easily understood. Herein, we present particularly interesting examples in detail rather than cataloguing them all.
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- 2013
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23. Organocatalytic, enantioselective synthesis of VNI: a robust therapeutic development platform for Chagas, a neglected tropical disease.
- Author
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Dobish MC, Villalta F, Waterman MR, Lepesheva GI, and Johnston JN
- Subjects
- Animals, Chagas Disease parasitology, Cytochrome P-450 Enzyme System, Imidazoles chemistry, Mice, Molecular Structure, Neglected Diseases, Oxadiazoles chemistry, Triazoles chemistry, Triazoles therapeutic use, Tropical Medicine, Chagas Disease drug therapy, Cytochrome P-450 Enzyme Inhibitors, Imidazoles chemical synthesis, Imidazoles therapeutic use, Oxadiazoles chemical synthesis, Oxadiazoles therapeutic use, Trypanosoma cruzi drug effects
- Abstract
VNI is a potent inhibitor of CYP51 and was recently shown to achieve a parasitological cure of mice infected with T. cruzi in both acute and chronic stages of infection. T. cruzi is the causative parasite of Chagas disease, a neglected tropical disease. The first enantioselective chemical synthesis of VNI (at a materials cost of less than $0.10/mg) is described. Furthermore, the key enantioselective step is performed at the 10 g scale.
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- 2012
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24. CYP51 structures and structure-based development of novel, pathogen-specific inhibitory scaffolds.
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Hargrove TY, Kim K, de Nazaré Correia Soeiro M, da Silva CF, Batista DD, Batista MM, Yazlovitskaya EM, Waterman MR, Sulikowski GA, and Lepesheva GI
- Abstract
CYP51 (sterol 14α-demethylase) is a cytochrome P450 enzyme essential for sterol biosynthesis and the primary target for clinical and agricultural antifungal azoles. The azoles that are currently in clinical use for systemic fungal infections represent modifications of two basic scaffolds, ketoconazole and fluconazole, all of them being selected based on their antiparasitic activity in cellular experiments. By studying direct inhibition of CYP51 activity across phylogeny including human pathogens Trypanosoma brucei , Trypanosoma cruzi and Leishmania infantum , we identified three novel protozoa-specific inhibitory scaffolds, their inhibitory potency correlating well with antiprotozoan activity. VNI scaffold (carboxamide containing β-phenyl-imidazoles) is the most promising among them: killing T. cruzi amastigotes at low nanomolar concentration, it is also easy to synthesize and nontoxic. Oral administration of VNI (up to 400 mg/kg) neither leads to mortality nor reveals significant side effects up to 48 h post treatment using an experimental mouse model of acute toxicity. Trypanosomatidae CYP51 crystal structures determined in the ligand-free state and complexed with several azole inhibitors as well as a substrate analog revealed high rigidity of the CYP51 substrate binding cavity, which must be essential for the enzyme strict substrate specificity and functional conservation. Explaining profound potency of the VNI inhibitory scaffold, the structures also outline guidelines for its further development. First steps of the VNI scaffold optimization have been undertaken; the results presented here support the notion that CYP51 structure-based rational design of more efficient, pathogen-specific inhibitors represents a highly promising direction.
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- 2012
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25. Investigating conservation of the albaflavenone biosynthetic pathway and CYP170 bifunctionality in streptomycetes.
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Moody SC, Zhao B, Lei L, Nelson DR, Mullins JG, Waterman MR, Kelly SL, and Lamb DC
- Subjects
- Alkyl and Aryl Transferases genetics, Amino Acid Sequence, Catalytic Domain, Cytochrome P-450 Enzyme System isolation & purification, Models, Molecular, Molecular Sequence Data, Polyisoprenyl Phosphates metabolism, Sesquiterpenes metabolism, Streptomyces genetics, Streptomyces coelicolor enzymology, Cytochrome P-450 Enzyme System metabolism, Streptomyces enzymology
- Abstract
Albaflavenone, a tricyclic sesquiterpene antibiotic, is biosynthesized in Streptomyces coelicolor A3(2) by enzymes encoded in a two-gene operon. Initially, sesquiterpene cyclase catalyzes the cyclization of farnesyl diphosphate to the terpenoid epi-isozizaene, which is oxidized to the final albaflavenone by cytochrome P450 (CYP)170A1. Additionally, this CYP is a bifunctional enzyme, being able to also generate farnesene isomers from farnesyl diphosphate, owing to a terpene synthase active site moonlighting on the CYP molecule. To explore the functionality of this operon in other streptomycetes, we have examined culture extracts by GC/MS and established the presence of albaflavenone in five Streptomyces species. Bioinformatics examination of the predicted CYP170 primary amino acid sequences revealed substitutions in the CYP terpene synthase active site. To examine whether the terpene synthase site was catalytically active in another CYP170, we characterized the least related CYP170 orthologue from Streptomyces albus (CYP170B1). Following expression and purification, CYP170B1 showed a normal reduced CO difference spectrum at 450 nm, in contrast to the unusual 440-nm peak observed for S. coelicolor A3(2) CYP170A1. CYP170B1 can catalyze the conversion of epi-isozizaene to albaflavenone, but was unable to catalyze the conversion of farnesyl diphosphate to farnesene. Molecular modeling with our crystal structure of CYP170A1 suggests that the absence of key amino acids for binding the essential terpene synthase cofactor Mg(2+) may be the explanation for the loss of CYP170B1 bifunctionality., (© 2011 The Authors Journal compilation © 2011 FEBS.)
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- 2012
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26. Novel sterol metabolic network of Trypanosoma brucei procyclic and bloodstream forms.
- Author
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Nes CR, Singha UK, Liu J, Ganapathy K, Villalta F, Waterman MR, Lepesheva GI, Chaudhuri M, and Nes WD
- Subjects
- Escherichia coli, Metabolome, Methyltransferases biosynthesis, Methyltransferases chemistry, Protozoan Proteins biosynthesis, Protozoan Proteins chemistry, Recombinant Proteins biosynthesis, Recombinant Proteins chemistry, Sterol 14-Demethylase biosynthesis, Sterol 14-Demethylase chemistry, Sterols chemistry, Sterols metabolism, Trypanosoma brucei brucei metabolism, Sterols biosynthesis, Trypanosoma brucei brucei physiology
- Abstract
Trypanosoma brucei is the protozoan parasite that causes African trypanosomiasis, a neglected disease of people and animals. Co-metabolite analysis, labelling studies using [methyl-2H3]-methionine and substrate/product specificities of the cloned 24-SMT (sterol C24-methyltransferase) and 14-SDM (sterol C14demethylase) from T. brucei afforded an uncommon sterol metabolic network that proceeds from lanosterol and 31-norlanosterol to ETO [ergosta-5,7,25(27)-trien-3β-ol], 24-DTO [dimethyl ergosta-5,7,25(27)-trienol] and ergosterol [ergosta-5,7,22(23)-trienol]. To assess the possible carbon sources of ergosterol biosynthesis, specifically 13C-labelled specimens of lanosterol, acetate, leucine and glucose were administered to T. brucei and the 13C distributions found were in accord with the operation of the acetate-mevalonate pathway, with leucine as an alternative precursor, to ergostenols in either the insect or bloodstream form. In searching for metabolic signatures of procyclic cells, we observed that the 13C-labelling treatments induce fluctuations between the acetyl-CoA (mitochondrial) and sterol (cytosolic) synthetic pathways detected by the progressive increase in 13C-ergosterol production (control<[2-(13)C]leucine<[2-(13)C]acetate<[1-(13)C]glucose) and corresponding depletion of cholesta-5,7,24-trienol. We conclude that anabolic fluxes originating in mitochondrial metabolism constitute a flexible part of sterol synthesis that is further fluctuated in the cytosol, yielding distinct sterol profiles in relation to cell demands on growth.
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- 2012
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27. Three-dimensional structure of steroid 21-hydroxylase (cytochrome P450 21A2) with two substrates reveals locations of disease-associated variants.
- Author
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Zhao B, Lei L, Kagawa N, Sundaramoorthy M, Banerjee S, Nagy LD, Guengerich FP, and Waterman MR
- Subjects
- 17-alpha-Hydroxyprogesterone metabolism, Adrenal Hyperplasia, Congenital genetics, Animals, Binding Sites, Cattle, Crystallography, X-Ray, Humans, Steroid 21-Hydroxylase genetics, Steroid 21-Hydroxylase metabolism, Structure-Activity Relationship, 17-alpha-Hydroxyprogesterone chemistry, Adrenal Hyperplasia, Congenital enzymology, Mutation, Steroid 21-Hydroxylase chemistry
- Abstract
Steroid 21-hydroxylase (cytochrome P450 21A2, CYP21A2) deficiency accounts for ∼95% of individuals with congenital adrenal hyperplasia, a common autosomal recessive metabolic disorder of adrenal steroidogenesis. The effects of amino acid mutations on CYP21A2 activity lead to impairment of the synthesis of cortisol and aldosterone and the excessive production of androgens. In order to understand the structural and molecular basis of this group of diseases, the bovine CYP21A2 crystal structure complexed with the substrate 17-hydroxyprogesterone (17OHP) was determined to 3.0 Å resolution. An intriguing result from this structure is that there are two molecules of 17OHP bound to the enzyme, the distal one being located at the entrance of the substrate access channel and the proximal one bound in the active site. The substrate binding features locate the key substrate recognition residues not only around the heme but also along the substrate access channel. In addition, orientation of the skeleton of the proximal molecule is toward the interior of the enzyme away from the substrate access channel. The 17OHP complex of CYP21A2 provides a good relationship between the crystal structure, clinical data, and genetic mutants documented in the literature, thereby enhancing our understanding of congenital adrenal hyperplasia. In addition, the location of certain CYP21A2 mutations provides general understanding of structure/function relationships in P450s.
- Published
- 2012
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28. The role of Ile87 of CYP158A2 in oxidative coupling reaction.
- Author
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Zhao B, Bellamine A, Lei L, and Waterman MR
- Subjects
- Amino Acid Substitution, Bacterial Proteins genetics, Bacterial Proteins metabolism, Biflavonoids chemistry, Biflavonoids genetics, Biflavonoids metabolism, Catalysis, Catalytic Domain, Crystallography, X-Ray, Cytochrome P-450 Enzyme System genetics, Cytochrome P-450 Enzyme System metabolism, Isoleucine genetics, Isoleucine metabolism, Mutation, Missense, Oxidation-Reduction, Streptomyces coelicolor genetics, Bacterial Proteins chemistry, Cytochrome P-450 Enzyme System chemistry, Isoleucine chemistry, Streptomyces coelicolor enzymology
- Abstract
Both CYP158A1 and CYP158A2 are able to catalyze an oxidative C-C coupling reaction producing biflaviolin or triflaviolin in Streptomyces coelicolor A3(2). The substrate-bound crystal structures of CYP158A2 and CYP158A1 reveal that the side chain of Ile87 in CYP158A2 points to the active site contacting the distal flaviolin molecule, however, the bulkier side chain of Lys90 in CYP158A1 (corresponding to Ile87 in CYP158A2) is toward the distal surface of the protein. These results suggest that these residues could be important in determining product regiospecificity. In order to explore the role of the two residues in catalysis, the reciprocal mutants, Ile87Lys and Lys90Ile, of CYP158A2 and CYP158A1, respectively, were generated and characterized. The mutant Ile87Lys enzyme forms two isomers of biflaviolin instead of three isomers of biflaviolin in wild-type CYP158A2. CYP158A1 containing the substitution of lysine with isoleucine has the same catalytic activity compared with the wild-type CYP158A1. The crystal structure of Ile87Lys showed that the BC loop in the mutant is in a very different orientation compared with the BC loop in both CYP158A1/A2 structures. These results shed light on the mechanism of the oxidative coupling reaction catalyzed by cytochrome P450., (Copyright © 2011 Elsevier Inc. All rights reserved.)
- Published
- 2012
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29. Structural complex of sterol 14α-demethylase (CYP51) with 14α-methylenecyclopropyl-Delta7-24, 25-dihydrolanosterol.
- Author
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Hargrove TY, Wawrzak Z, Liu J, Waterman MR, Nes WD, and Lepesheva GI
- Subjects
- 14-alpha Demethylase Inhibitors chemistry, 14-alpha Demethylase Inhibitors metabolism, 14-alpha Demethylase Inhibitors pharmacology, Binding Sites, Crystallography, X-Ray, Dose-Response Relationship, Drug, Enzyme Activation, Lanosterol chemistry, Lanosterol metabolism, Models, Molecular, Mutation, Protein Conformation, Sterol 14-Demethylase genetics, Trypanocidal Agents chemistry, Trypanocidal Agents pharmacology, Lanosterol analogs & derivatives, Sterol 14-Demethylase chemistry, Sterol 14-Demethylase metabolism, Trypanosoma brucei brucei enzymology
- Abstract
Sterol 14α-demethylase (CYP51) that catalyzes the removal of the 14α-methyl group from the sterol nucleus is an essential enzyme in sterol biosynthesis, a primary target for clinical and agricultural antifungal azoles and an emerging target for antitrypanosomal chemotherapy. Here, we present the crystal structure of Trypanosoma (T) brucei CYP51 in complex with the substrate analog 14α-methylenecyclopropyl-Δ7-24,25-dihydrolanosterol (MCP). This sterol binds tightly to all protozoan CYP51s and acts as a competitive inhibitor of F105-containing (plant-like) T. brucei and Leishmania (L) infantum orthologs, but it has a much stronger, mechanism-based inhibitory effect on I105-containing (animal/fungi-like) T. cruzi CYP51. Depicting substrate orientation in the conserved CYP51 binding cavity, the complex specifies the roles of the contact amino acid residues and sheds new light on CYP51 substrate specificity. It also provides an explanation for the effect of MCP on T. cruzi CYP51. Comparison with the ligand-free and azole-bound structures supports the notion of structural rigidity as the characteristic feature of the CYP51 substrate binding cavity, confirming the enzyme as an excellent candidate for structure-directed design of new drugs, including mechanism-based substrate analog inhibitors.
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- 2012
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30. Structural analysis of cytochrome P450 105N1 involved in the biosynthesis of the zincophore, coelibactin.
- Author
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Zhao B, Moody SC, Hider RC, Lei L, Kelly SL, Waterman MR, and Lamb DC
- Subjects
- Bacterial Proteins biosynthesis, Bacterial Proteins genetics, Catalytic Domain, Crystallography, X-Ray, Cytochrome P-450 Enzyme System biosynthesis, Cytochrome P-450 Enzyme System genetics, Models, Molecular, Protein Structure, Secondary, Siderophores biosynthesis, Zinc chemistry, Bacterial Proteins chemistry, Cytochrome P-450 Enzyme System chemistry, Oxazoles metabolism, Streptomyces coelicolor enzymology, Thiazoles metabolism
- Abstract
Coelibactin is a putative non-ribosomally synthesized peptide with predicted zincophore activity and which has been implicated in antibiotic regulation in Streptomyces coelicolor A3(2). The coelibactin biosynthetic pathway contains a stereo- and regio-specific monooxygenation step catalyzed by a cytochrome P450 enzyme (CYP105N1). We have determined the X-ray crystal structure of CYP105N1 at 2.9 Å and analyzed it in the context of the bacterial CYP105 family as a whole. The crystal structure reveals a channel between the α-helical domain and the β-sheet domain exposing the heme pocket and the long helix I to the solvent. This wide-open conformation of CYP105N1 may be related to the bulky substrate coelibactin. The ligand-free CYP105N1 structure has enough room in the substrate access channel to allow the coelibactin to enter into the active site. Analysis of typical siderophore ligands suggests that CYP105N1 may produce derivatives of coelibactin, which would then be able to chelate the zinc divalent cation.
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- 2012
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31. Substrate preferences and catalytic parameters determined by structural characteristics of sterol 14alpha-demethylase (CYP51) from Leishmania infantum.
- Author
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Hargrove TY, Wawrzak Z, Liu J, Nes WD, Waterman MR, and Lepesheva GI
- Subjects
- 14-alpha Demethylase Inhibitors chemistry, 14-alpha Demethylase Inhibitors therapeutic use, Binding Sites, Catalysis, Leishmaniasis, Visceral drug therapy, Leishmaniasis, Visceral enzymology, Protein Binding, Protozoan Proteins antagonists & inhibitors, Protozoan Proteins metabolism, Species Specificity, Sterol 14-Demethylase metabolism, Substrate Specificity, Trypanosoma brucei brucei enzymology, Trypanosoma cruzi enzymology, Leishmania infantum enzymology, Protozoan Proteins chemistry, Sterol 14-Demethylase chemistry
- Abstract
Leishmaniasis is a major health problem that affects populations of ∼90 countries worldwide, with no vaccine and only a few moderately effective drugs. Here we report the structure/function characterization of sterol 14α-demethylase (CYP51) from Leishmania infantum. The enzyme catalyzes removal of the 14α-methyl group from sterol precursors. The reaction is essential for membrane biogenesis and therefore has great potential to become a target for antileishmanial chemotherapy. Although L. infantum CYP51 prefers C4-monomethylated sterol substrates such as C4-norlanosterol and obtusifoliol (V(max) of ∼10 and 8 min(-1), respectively), it is also found to 14α-demethylate C4-dimethylated lanosterol (V(max) = 0.9 min(-1)) and C4-desmethylated 14α-methylzymosterol (V(max) = 1.9 min(-1)). Binding parameters with six sterols were tested, with K(d) values ranging from 0.25 to 1.4 μM. Thus, L. infantum CYP51 is the first example of a plant-like sterol 14α-demethylase, where requirements toward the composition of the C4 atom substituents are not strict, indicative of possible branching in the postsqualene portion of sterol biosynthesis in the parasite. Comparative analysis of three CYP51 substrate binding cavities (Trypanosoma brucei, Trypanosoma cruzi, and L. infantum) suggests that substrate preferences of plant- and fungal-like protozoan CYP51s largely depend on the differences in the enzyme active site topology. These minor structural differences are also likely to underlie CYP51 catalytic rates and drug susceptibility and can be used to design potent and specific inhibitors.
- Published
- 2011
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32. Moonlighting cytochrome P450 monooxygenases.
- Author
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Zhao B and Waterman MR
- Subjects
- Animals, Catalytic Domain, Cytochrome P-450 Enzyme System chemistry, Humans, Isoenzymes chemistry, Models, Molecular, Cytochrome P-450 Enzyme System metabolism, Isoenzymes metabolism, Protein Conformation
- Abstract
Recently, cytochrome P450 170A1 (CYP170A1) has been found to be a bifunctional protein, which catalyzes both monooxygenase activity and terpene synthase activity by two distinct active sites in the well-established P450 protein structure. Therefore, CYP170A1 is identified clearly as a moonlighting protein. The known activities of a small number of the 13,000 members of the P450 superfamily fall into two general classes: promiscuous enzymes that are not considered as moonlighting and forms that participate in biosynthesis of endogenous compounds, such as steroids, vitamins and play different roles in different tissues, sometimes being moonlighting enzymes. Here, we review examples of moonlighting P450, which add to our understanding of the large CYP superfamily., (Copyright © 2011 Wiley Periodicals, Inc.)
- Published
- 2011
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33. Sterol 14alpha-demethylase (CYP51) as a therapeutic target for human trypanosomiasis and leishmaniasis.
- Author
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Lepesheva GI and Waterman MR
- Subjects
- Amino Acid Sequence, Animals, Antiprotozoal Agents pharmacology, Binding Sites, Chagas Disease parasitology, Chagas Disease transmission, Crystallography, X-Ray, Enzyme Inhibitors pharmacology, Humans, Insect Vectors parasitology, Leishmania infantum enzymology, Leishmaniasis parasitology, Leishmaniasis transmission, Models, Molecular, Molecular Sequence Data, Protein Binding, Protein Structure, Tertiary, Protozoan Proteins antagonists & inhibitors, Protozoan Proteins metabolism, Sequence Alignment, Sterols biosynthesis, Substrate Specificity, Trypanosoma brucei brucei enzymology, Trypanosoma cruzi enzymology, Trypanosomiasis, African parasitology, Trypanosomiasis, African transmission, Chagas Disease drug therapy, Leishmania infantum drug effects, Leishmaniasis drug therapy, Sterol 14-Demethylase metabolism, Sterols antagonists & inhibitors, Trypanosoma brucei brucei drug effects, Trypanosoma cruzi drug effects, Trypanosomiasis, African drug therapy
- Abstract
Pathogenic protozoa threaten lives of several hundred million people throughout the world and are responsible for large numbers of deaths globally. The parasites are transmitted to humans by insect vectors, more than a hundred of infected mammalian species forming reservoir. With human migrations, HIV-coinfections, and blood bank contamination the diseases are now spreading beyond the endemic tropical countries, being found in all parts of the world including the USA, Canada and Europe. In spite of the widely appreciated magnitude of this health problem, current treatment for sleeping sickness (Trypanosoma brucei), Chagas disease (Trypanosoma cruzi) and leishmaniasis (Leishmania spp.) remains unsatisfactory. The drugs are decades old, their efficacy and safety profiles are unacceptable. This review describes sterol 14α-demethylase, an essential enzyme in sterol biosynthesis in eukaryotes and clinical target for antifungal azoles, as a promising target for antiprotozoan chemotherapy. While several antifungal azoles have been proven active against Trypanosomatidae and are under consideration as antiprotozoan agents, crystal structures of sterol 14α-demethylases from three protozoan pathogens, Trypanosoma brucei, Trypanosoma cruzi and Leishmania infantum provide the basis for the development of new, highly potent and pathogen-specific drugs with rationally optimized pharmacological properties.
- Published
- 2011
- Full Text
- View/download PDF
34. Structural basis for conservation in the CYP51 family.
- Author
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Lepesheva GI and Waterman MR
- Subjects
- Amino Acid Sequence, Animals, Conserved Sequence genetics, Humans, Molecular Sequence Data, Sequence Homology, Amino Acid, Sterol 14-Demethylase genetics, Sterol 14-Demethylase metabolism, Eukaryotic Cells enzymology, Protein Structure, Secondary, Protein Structure, Tertiary, Sterol 14-Demethylase chemistry
- Abstract
Sterol 14α-demethylases (14DM) comprise the CYP51 cytochrome P450 genome family. The 14DM reaction is essential for the biosynthesis of sterols which are necessary for production of cellular membranes. This is the most widely distributed P450, being present in all biological kingdoms. From one kingdom to another the primary amino acid sequence identity usually ranges between 30 and 20%. In this minireview we describe the conservation of specific amino acids and the various CYP51 orthologs and indicate the roles that they may play in the structure/function of this monooxygenase. The prediction of the roles of different amino acids in 14DM is based on high resolution tertiary structures of these enzymes which set the stage for detailed understanding of the 14α-demethylase reaction and its selective, phyla-specific inhibition which is crucial for the design of potent inhibitors for treatment of infection by pathogenic microbes., (Copyright © 2010 Elsevier B.V. All rights reserved.)
- Published
- 2011
- Full Text
- View/download PDF
35. Targeting Trypanosoma cruzi sterol 14α-demethylase (CYP51).
- Author
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Lepesheva GI, Villalta F, and Waterman MR
- Subjects
- Antifungal Agents pharmacology, Azoles pharmacology, Catalytic Domain, Chagas Disease parasitology, Chagas Disease therapy, Cytochrome P-450 Enzyme Inhibitors, Drug Discovery, Humans, Protein Conformation, Substrate Specificity, Triazoles pharmacology, Trypanosoma cruzi drug effects, 14-alpha Demethylase Inhibitors pharmacology, Cytochrome P-450 Enzyme System metabolism, Trypanocidal Agents pharmacology, Trypanosoma cruzi enzymology
- Abstract
There are at least two obvious features that must be considered upon targeting specific metabolic pathways/enzymes for drug development: the pathway must be essential and the enzyme must allow the design of pharmacologically useful inhibitors. Here, we describe Trypanosoma cruzi sterol 14α-demethylase as a promising target for anti-Chagasic chemotherapy. The use of anti-fungal azoles, which block sterol biosynthesis and therefore membrane formation in fungi, against the protozoan parasite has turned out to be highly successful: a broad spectrum anti-fungal drug, the triazole compound posaconazole, is now entering phase II clinical trials for treatment of Chagas disease. This review summarizes comparative information on anti-fungal azoles and novel inhibitory scaffolds selective for Trypanosomatidae sterol 14α-demethylase through the lens of recent structure/functional characterization of the target enzyme. We believe our studies open wide opportunities for rational design of novel, pathogen-specific and therefore more potent and efficient anti-trypanosomal drugs., (Copyright © 2011 Elsevier Ltd. All rights reserved.)
- Published
- 2011
- Full Text
- View/download PDF
36. Structural insights into inhibition of sterol 14alpha-demethylase in the human pathogen Trypanosoma cruzi.
- Author
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Lepesheva GI, Hargrove TY, Anderson S, Kleshchenko Y, Furtak V, Wawrzak Z, Villalta F, and Waterman MR
- Subjects
- Animals, Antifungal Agents pharmacology, Antifungal Agents therapeutic use, Chagas Disease drug therapy, Crystallography, X-Ray, Humans, Immunoblotting, Molecular Structure, Myocytes, Cardiac parasitology, Protein Structure, Secondary, Triazoles pharmacology, Triazoles therapeutic use, Trypanosoma cruzi drug effects, Trypanosoma cruzi pathogenicity, Antifungal Agents chemistry, Cytochrome P-450 Enzyme Inhibitors, Cytochrome P-450 Enzyme System chemistry, Triazoles chemistry, Trypanosoma cruzi enzymology
- Abstract
Trypanosoma cruzi causes Chagas disease (American trypanosomiasis), which threatens the lives of millions of people and remains incurable in its chronic stage. The antifungal drug posaconazole that blocks sterol biosynthesis in the parasite is the only compound entering clinical trials for the chronic form of this infection. Crystal structures of the drug target enzyme, Trypanosoma cruzi sterol 14alpha-demethylase (CYP51), complexed with posaconazole, another antifungal agent fluconazole and an experimental inhibitor, (R)-4'-chloro-N-(1-(2,4-dichlorophenyl)-2-(1H-imid-azol-1-yl)ethyl)biphenyl-4-carboxamide (VNF), allow prediction of important chemical features that enhance the drug potencies. Combined with comparative analysis of inhibitor binding parameters, influence on the catalytic activity of the trypanosomal enzyme and its human counterpart, and their cellular effects at different stages of the Trypanosoma cruzi life cycle, the structural data provide a molecular background to CYP51 inhibition and azole resistance and enlighten the path for directed design of new, more potent and selective drugs to develop an efficient treatment for Chagas disease.
- Published
- 2010
- Full Text
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37. Streptomyces coelicolor A3(2) CYP102 protein, a novel fatty acid hydroxylase encoded as a heme domain without an N-terminal redox partner.
- Author
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Lamb DC, Lei L, Zhao B, Yuan H, Jackson CJ, Warrilow AG, Skaug T, Dyson PJ, Dawson ES, Kelly SL, Hachey DL, and Waterman MR
- Subjects
- 8,11,14-Eicosatrienoic Acid analogs & derivatives, 8,11,14-Eicosatrienoic Acid metabolism, Arachidonic Acid metabolism, Cloning, Molecular, Cytochrome P-450 Enzyme System isolation & purification, Cytochrome P-450 Enzyme System metabolism, DNA Transposable Elements, Escherichia coli genetics, Ferredoxin-NADP Reductase metabolism, Ferredoxins metabolism, Gene Expression, Mixed Function Oxygenases isolation & purification, Mixed Function Oxygenases metabolism, Mutagenesis, Insertional, NADP metabolism, Streptomyces coelicolor genetics, Substrate Specificity, Cytochrome P-450 Enzyme System genetics, Mixed Function Oxygenases genetics, Streptomyces coelicolor enzymology
- Abstract
The gene from Streptomyces coelicolor A3(2) encoding CYP102B1, a recently discovered CYP102 subfamily which exists solely as a single P450 heme domain, has been cloned, expressed in Escherichia coli, purified, characterized, and compared to its fusion protein family members. Purified reconstitution metabolism experiments with spinach ferredoxin, ferredoxin reductase, and NADPH revealed differences in the regio- and stereoselective metabolism of arachidonic acid compared to that of CYP102A1, exclusively producing 11,12-epoxyeicosa-5,8,14-trienoic acid in addition to the shared metabolites 18-hydroxy arachidonic acid and 14,15-epoxyeicosa-5,8,11-trienoic acid. Consequently, in order to elucidate the physiological function of CYP102B1, transposon mutagenesis was used to generate an S. coelicolor A3(2) strain lacking CYP102B1 activity and the phenotype was assessed.
- Published
- 2010
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38. Crystal structures of Trypanosoma brucei sterol 14alpha-demethylase and implications for selective treatment of human infections.
- Author
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Lepesheva GI, Park HW, Hargrove TY, Vanhollebeke B, Wawrzak Z, Harp JM, Sundaramoorthy M, Nes WD, Pays E, Chaudhuri M, Villalta F, and Waterman MR
- Subjects
- Amino Acid Sequence, Benzamides chemistry, Benzamides metabolism, Benzamides pharmacology, Benzamides therapeutic use, Biocatalysis, Crystallography, X-Ray, Cytochrome P-450 Enzyme System chemistry, Cytochrome P-450 Enzyme System metabolism, Drug Design, Enzyme Inhibitors chemistry, Enzyme Inhibitors metabolism, Enzyme Inhibitors pharmacology, Enzyme Inhibitors therapeutic use, Humans, Ligands, Microsomes enzymology, Models, Molecular, Protein Conformation, Sterol 14-Demethylase, Sterols biosynthesis, Substrate Specificity, Trypanocidal Agents chemistry, Trypanocidal Agents metabolism, Trypanocidal Agents pharmacology, Trypanocidal Agents therapeutic use, Trypanosoma brucei brucei drug effects, Cytochrome P-450 Enzyme Inhibitors, Trypanosoma brucei brucei enzymology, Trypanosomiasis, African drug therapy
- Abstract
Sterol 14alpha-demethylase (14DM, the CYP51 family of cytochrome P450) is an essential enzyme in sterol biosynthesis in eukaryotes. It serves as a major drug target for fungal diseases and can potentially become a target for treatment of human infections with protozoa. Here we present 1.9 A resolution crystal structures of 14DM from the protozoan pathogen Trypanosoma brucei, ligand-free and complexed with a strong chemically selected inhibitor N-1-(2,4-dichlorophenyl)-2-(1H-imidazol-1-yl)ethyl)-4-(5-phenyl-1,3,4-oxadi-azol-2-yl)benzamide that we previously found to produce potent antiparasitic effects in Trypanosomatidae. This is the first structure of a eukaryotic microsomal 14DM that acts on sterol biosynthesis, and it differs profoundly from that of the water-soluble CYP51 family member from Mycobacterium tuberculosis, both in organization of the active site cavity and in the substrate access channel location. Inhibitor binding does not cause large scale conformational rearrangements, yet induces unanticipated local alterations in the active site, including formation of a hydrogen bond network that connects, via the inhibitor amide group fragment, two remote functionally essential protein segments and alters the heme environment. The inhibitor binding mode provides a possible explanation for both its functionally irreversible effect on the enzyme activity and its selectivity toward the 14DM from human pathogens versus the human 14DM ortholog. The structures shed new light on 14DM functional conservation and open an excellent opportunity for directed design of novel antiparasitic drugs.
- Published
- 2010
- Full Text
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39. Crystal structure of albaflavenone monooxygenase containing a moonlighting terpene synthase active site.
- Author
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Zhao B, Lei L, Vassylyev DG, Lin X, Cane DE, Kelly SL, Yuan H, Lamb DC, and Waterman MR
- Subjects
- Alkyl and Aryl Transferases metabolism, Bacterial Proteins metabolism, Catalytic Domain physiology, Crystallography, X-Ray, Cytochrome P-450 Enzyme System metabolism, Heme chemistry, Heme metabolism, Iron chemistry, Iron metabolism, Polyisoprenyl Phosphates biosynthesis, Polyisoprenyl Phosphates chemistry, Protein Binding physiology, Protein Structure, Secondary physiology, Protein Structure, Tertiary physiology, Sesquiterpenes chemistry, Sesquiterpenes metabolism, Alkyl and Aryl Transferases chemistry, Bacterial Proteins chemistry, Cytochrome P-450 Enzyme System chemistry, Streptomyces coelicolor enzymology
- Abstract
Albaflavenone synthase (CYP170A1) is a monooxygenase catalyzing the final two steps in the biosynthesis of this antibiotic in the soil bacterium, Streptomyces coelicolor A3(2). Interestingly, CYP170A1 shows no stereo selection forming equal amounts of two albaflavenol epimers, each of which is oxidized in turn to albaflavenone. To explore the structural basis of the reaction mechanism, we have studied the crystal structures of both ligand-free CYP170A1 (2.6 A) and complex of endogenous substrate (epi-isozizaene) with CYP170A1 (3.3 A). The structure of the complex suggests that the proximal epi-isozizaene molecules may bind to the heme iron in two orientations. In addition, much to our surprise, we have found that albaflavenone synthase also has a second, completely distinct catalytic activity corresponding to the synthesis of farnesene isomers from farnesyl diphosphate. Within the cytochrome P450 alpha-helical domain both the primary sequence and x-ray structure indicate the presence of a novel terpene synthase active site that is moonlighting on the P450 structure. This includes signature sequences for divalent cation binding and an alpha-helical barrel. This barrel is unusual because it consists of only four helices rather than six found in all other terpene synthases. Mutagenesis establishes that this barrel is essential for the terpene synthase activity of CYP170A1 but not for the monooxygenase activity. This is the first bifunctional P450 discovered to have another active site moonlighting on it and the first time a terpene synthase active site is found moonlighting on another protein.
- Published
- 2009
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40. The first virally encoded cytochrome p450.
- Author
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Lamb DC, Lei L, Warrilow AG, Lepesheva GI, Mullins JG, Waterman MR, and Kelly SL
- Subjects
- Amino Acid Sequence, Animals, Cytochrome P-450 Enzyme System chemistry, Cytochrome P-450 Enzyme System metabolism, DNA Viruses chemistry, DNA Viruses classification, DNA Viruses genetics, Molecular Conformation, Molecular Sequence Data, Phylogeny, Sequence Alignment, Viral Proteins chemistry, Viral Proteins metabolism, Acanthamoeba virology, Cytochrome P-450 Enzyme System genetics, DNA Viruses enzymology, Viral Proteins genetics
- Abstract
The genome sequence of the giant virus Acanthamoeba polyphaga mimivirus revealed the presence of two putative cytochrome P450 (CYP) genes. The product of one of the two predicted CYP genes (YP_143162) showed low-level homology to sterol 14-demethylase (CYP51) and contained a C-terminal polypeptide domain of unknown function. YP_143162 expression (without an N-terminal membrane binding domain) in Escherichia coli yields a CYP protein which gives a reduced CO difference maximum at 448 nm and was formally demonstrated as the first viral cytochrome P450. Analysis of binding of lipid and sterol substrates indicated no perturbation in CYP heme environment, and an absence of activity was seen when 14-methyl sterols were used as a substrate. The function of the CYP protein and its C-terminal domain remain unknown.
- Published
- 2009
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41. Indomethacin amides as a novel molecular scaffold for targeting Trypanosoma cruzi sterol 14alpha-demethylase.
- Author
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Konkle ME, Hargrove TY, Kleshchenko YY, von Kries JP, Ridenour W, Uddin MJ, Caprioli RM, Marnett LJ, Nes WD, Villalta F, Waterman MR, and Lepesheva GI
- Subjects
- Animals, Antiparasitic Agents chemistry, Antiparasitic Agents pharmacology, Drug Evaluation, Preclinical, Extracellular Space drug effects, Extracellular Space enzymology, Intracellular Space drug effects, Intracellular Space enzymology, Ligands, Sterol 14-Demethylase, Sterols chemistry, Sterols metabolism, Trypanosoma cruzi cytology, Trypanosoma cruzi drug effects, Amides chemistry, Amides pharmacology, Cytochrome P-450 Enzyme Inhibitors, Enzyme Inhibitors chemistry, Enzyme Inhibitors pharmacology, Indomethacin analogs & derivatives, Trypanosoma cruzi enzymology
- Abstract
Trypanosoma cruzi (TC) causes Chagas disease, which in its chronic stage remains incurable. We have shown recently that specific inhibition of TC sterol 14alpha-demethylase (TCCYP51) with imidazole derivatives is effective in killing both extracellular and intracellular human stages of TC. An alternative set of TCCYP51 inhibitors has been identified using optical high throughput screening followed by web-database search for similar structures. The best TCCYP51 inhibitor from this search was found to have structural similarity to a class of cyclooxygenase-2-selective inhibitors, the indomethacin-amides. A number of indomethacin-amides were found to bind to TCCYP51, inhibit its activity in vitro, and produce strong antiparasitic effects in the cultured TC cells. Analysis of TC sterol composition indicated that the mode of action of the compounds is by inhibition of sterol biosynthesis in the parasite.
- Published
- 2009
- Full Text
- View/download PDF
42. Structural biology: Anticancer drug target pictured.
- Author
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Waterman MR
- Subjects
- Aromatase Inhibitors therapeutic use, Breast Neoplasms metabolism, Catalytic Domain, Crystallography, X-Ray, Female, Humans, Aromatase chemistry, Aromatase metabolism, Aromatase Inhibitors pharmacology, Breast Neoplasms drug therapy, Breast Neoplasms enzymology, Estrogens biosynthesis
- Published
- 2009
- Full Text
- View/download PDF
43. CYP51: A major drug target in the cytochrome P450 superfamily.
- Author
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Lepesheva GI, Hargrove TY, Kleshchenko Y, Nes WD, Villalta F, and Waterman MR
- Subjects
- Animals, Azoles chemistry, Azoles metabolism, Cytochrome P-450 Enzyme Inhibitors, Cytochrome P-450 Enzyme System genetics, Drug Design, Humans, Microbial Sensitivity Tests, Molecular Structure, Protozoan Proteins antagonists & inhibitors, Protozoan Proteins genetics, Sterols chemistry, Sterols metabolism, Substrate Specificity, Trypanosoma cytology, Trypanosoma physiology, Cytochrome P-450 Enzyme System metabolism, Protozoan Proteins metabolism, Trypanosoma enzymology
- Abstract
The cytochrome P540 (CYP) superfamily currently includes about 9000 proteins forming more than 800 families. The enzymes catalyze monooxygenation of a vast array of compounds and play essentially two roles. They provide biodefense (detoxification of xenobiotics, antibiotic production) and participate in biosynthesis of important endogenous molecules, particularly steroids. Based on these two roles, sterol 14/*alpha*/-demethylases (CYP51) belong to the second group of P450s. The CYP51 family, however, is very special as its members preserve strict functional conservation in enzyme activity in all biological kingdoms. At amino acid identity across the kingdoms as low as 25-30%, they all catalyze essentially the same three-step reaction of oxidative removal of the 14/*alpha*/-methyl group from the lanostane frame. This reaction is the required step in sterol biosynthesis of pathogenic microbes. We have shown that specific inhibition of protozoan CYP51 can potentially provide treatment for human trypanosomiases. Three sets of CYP51 inhibitors tested in vitro and in trypanosomal cells in this study include azoles [best results being 50% cell growth inhibition at <1 and at 1.3 muM for Trypanosoma cruzi (TC) and Trypanosoma brucei (TB), respectively], non-azole compounds (50% TC cell growth inhibition at 5 microM) and substrate analogs of the 14/*alpha*/-demethylase reaction. 32-Methylene cyclopropyl lanost-7-enol exhibited selectivity toward TC with 50% cell growth inhibition at 3 microM.
- Published
- 2008
- Full Text
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44. Aromatase is phosphorylated in situ at serine-118.
- Author
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Miller TW, Shin I, Kagawa N, Evans DB, Waterman MR, and Arteaga CL
- Subjects
- Animals, Aromatase genetics, Cell Line, Chlorocebus aethiops, Enzyme Activation, Humans, Mice, Mutation, Phosphorylation, Aromatase metabolism, Serine metabolism
- Abstract
Phosphorylation of the cytochrome P450 aromatase has been proposed as a switch to rapidly modulate enzymatic activity and estrogen biosynthesis. Herein, we demonstrate that aromatase serine-118 is a potential phosphorylation site in mammalian cells. The amino acid context surrounding S118 is highly conserved among diverse animal species and suggests that an AGC-like kinase may phosphorylate aromatase. Mutation of S118 to Ala blocked phosphorylation. Mutation of S118 to either Ala or Asp destabilized aromatase, indicating an important structural role for S118. The phosphomimetic S118D mutant showed decreased specific enzymatic activity, decreased Vmax, and increased Km, while the S118A phospho-inhibiting mutant showed opposite effects. Our findings suggest that phosphorylation of S118 may decrease aromatase activity, presenting a mechanism whereby kinase signaling may modulate estrogen production and hormone balance.
- Published
- 2008
- Full Text
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45. Association of a CYP4A11 variant and blood pressure in black men.
- Author
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Gainer JV, Lipkowitz MS, Yu C, Waterman MR, Dawson EP, Capdevila JH, and Brown NJ
- Subjects
- Adult, Antihypertensive Agents therapeutic use, Cytochrome P-450 CYP4A, Disease Progression, Genetic Variation, Genotype, Humans, Hypertension complications, Hypertension drug therapy, Male, Middle Aged, Sex Characteristics, Black or African American genetics, Blood Pressure genetics, Cytochrome P-450 Enzyme System genetics, Hypertension genetics, Nephrosclerosis etiology
- Abstract
CYP4A11 arachidonic acid monooxygenase oxidizes endogenous arachidonic acid to 20-hydroxyeicosatetraenoic acid, a renal vasoconstrictor and natriuretic. Cyp4a deficiency causes hypertension in male mice, and a loss-of-function variant (T8590C) of CYP4A11 is associated with hypertension in white individuals. Hypertension and hypertensive renal disease are more common among black than white individuals, but the relationship between genetic variation at CYP4A11 and hypertension in black individuals is not known. This study tested the hypothesis that the CYP4A11 T8590C polymorphism is associated with higher BP or clinical outcomes in 732 black Americans with hypertensive renal disease participating in the African American Study of Kidney Disease (AASK). Men with the 8590CC genotype had significantly higher systolic BP (CC 156.5 +/- 22.6 versus 148.4 +/- 24.3 mmHg in CT and TT combined; P = 0.04) and pulse pressure (P = 0.04) at baseline; this association was not observed among women. In addition, this genotype was associated with higher systolic and diastolic BP at 36-mo follow-up among those randomly assigned to the lower BP arm of the AASK. Among all participants (or men but not women) with proteinuria, the 8590CC genotype was associated with an increased cumulative incidence of ESRD or death, controlling for randomization and clinical characteristics. In summary, the CYP4A11 8590CC genotype is associated with increased BP in black men with hypertensive nephrosclerosis and is associated with adverse clinical outcomes in those with baseline proteinuria. These data support a role for renal monooxygenases and 20-hydroxyeicosatetraenoic acid in the regulation of BP and renal function in men.
- Published
- 2008
- Full Text
- View/download PDF
46. The ferrous-oxy complex of human aromatase.
- Author
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Grinkova YV, Denisov IG, Waterman MR, Arase M, Kagawa N, and Sligar SG
- Subjects
- Androstenedione chemistry, Aromatase genetics, Humans, Oxidation-Reduction, Aromatase chemistry, Iron chemistry, Lipid Bilayers chemistry, Nanostructures chemistry, Phospholipids chemistry
- Abstract
In this communication, we document the self-assembly of heterologously expressed truncated human aromatase (CYP19) into nanometer scale phospholipids bilayers (Nanodiscs). The resulting P450 CYP19 preparation is stable and can tightly associate with the substrate androstenedione to form a nearly complete high-spin ferric protein. Ferrous CYP19 in Nanodiscs was mixed anaerobically in a rapid-scan stopped-flow with atmospheric dioxygen and the formation of the ferrous-oxy complex observed. First order decay of the oxy-complex to release superoxide and regenerate the ferric enzyme was monitored kinetically. Surprisingly, the ferrous-oxy complex of aromatase is more stable than that of hepatic CYP3A4, opening the path to precisely determine the biochemical and biophysical properties of the reaction cycle intermediates in this important human drug target.
- Published
- 2008
- Full Text
- View/download PDF
47. Biosynthesis of the sesquiterpene antibiotic albaflavenone in Streptomyces coelicolor A3(2).
- Author
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Zhao B, Lin X, Lei L, Lamb DC, Kelly SL, Waterman MR, and Cane DE
- Subjects
- Anti-Bacterial Agents chemistry, Catalysis, Cytochrome P-450 Enzyme System genetics, Cytochrome P-450 Enzyme System metabolism, Flavodoxin metabolism, Gas Chromatography-Mass Spectrometry, Magnetic Resonance Spectroscopy, Molecular Structure, NADH, NADPH Oxidoreductases metabolism, Sesquiterpenes chemistry, Sesquiterpenes metabolism, Streptomyces coelicolor chemistry, Streptomyces coelicolor genetics, Anti-Bacterial Agents biosynthesis, Streptomyces coelicolor metabolism
- Abstract
Cytochrome P450 170A1 (CYP170A1) is encoded by the sco5223 gene of the Gram-positive, soil-dwelling bacterium Streptomyces coelicolor A3(2) as part of a two-gene cluster with the sco5222 gene. The SCO5222 protein is a sesquiterpene synthase that catalyzes the cyclization of farnesyl diphosphate to the novel tricyclic hydrocarbon, epi-isozizaene (Lin, X., Hopson, R., and Cane, D. E. (2006) J. Am. Chem. Soc. 128, 6022-6023). The presence of CYP170A1 (sco5223) suggested that epiisozizaene might be further oxidized by the transcriptionally coupled P450. We have now established that purified CYP170A1 carries out two sequential allylic oxidations to convert epi-isozizaene to an epimeric mixture of albaflavenols and thence to the sesquiterpene antibiotic albaflavenone. Gas chromatography/mass spectrometry analysis of S. coelicolor culture extracts established the presence of albaflavenone in the wild-type strain, along with its precursors epi-isozizaene and the albaflavenols. Disruption of the CYP170A1 gene abolished biosynthesis of both albaflavenone and the albaflavenols, but not epi-isozizaene. The combined results establish for the first time the presence of albaflavenone in S. coelicolor and clearly demonstrate that the biosynthesis of this antibiotic involves the coupled action of epi-isozizaene synthase and CYP170A1.
- Published
- 2008
- Full Text
- View/download PDF
48. The T8590C polymorphism of CYP4A11 and 20-hydroxyeicosatetraenoic acid in essential hypertension.
- Author
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Laffer CL, Gainer JV, Waterman MR, Capdevila JH, Laniado-Schwartzman M, Nasjletti A, Brown NJ, and Elijovich F
- Subjects
- Adult, Blood Pressure genetics, Cytochrome P-450 CYP4A, Female, Gene Frequency, Genotype, Humans, Hypertension blood, Insulin blood, Insulin Resistance genetics, Male, Middle Aged, Multivariate Analysis, Cytochrome P-450 Enzyme System genetics, Hydroxyeicosatetraenoic Acids urine, Hypertension genetics, Hypertension urine, Polymorphism, Single Nucleotide genetics
- Abstract
A role for a deficit in transport actions of 20-hydroxyeicosatetraenoic acid (20-HETE) in hypertension is supported by the following: (1) diminished renal 20-HETE in Dahl-S rats; (2) altered salt- and furosemide-induced 20-HETE responses in salt-sensitive hypertensive subjects; and (3) increased population risk for hypertension in C allele carriers of the T8590C polymorphism of CYP4A11, which encodes an enzyme with reduced catalytic activity. We determined T8590C genotypes in 32 hypertensive subjects, 25 of whom were phenotyped for salt sensitivity of blood pressure and insulin sensitivity. Urine 20-HETE was lowest in insulin-resistant, salt-sensitive subjects (F=5.56; P<0.02). Genotypes were 13 TT, 2 CC, and 17 CT. C allele frequency was 32.8% (blacks: 38.9%; whites: 25.0%). C carriers (CC+CT) and TT subjects were similarly distributed among salt- and insulin-sensitivity phenotypes. C carriers had higher diastolic blood pressures and aldosterone:renin and waist:hip ratios but lower furosemide-induced fractional excretions of Na and K than TT. The T8590C genotype did not relate to sodium balance or pressure natriuresis. However, C carriers, compared with TT, had diminished 20-HETE responses to salt loading after adjustment for serum insulin concentration and resetting of the negative relationship between serum insulin and urine 20-HETE to a 1-microg/h lower level of 20-HETE. The effect of C was insulin independent and equipotent to 18 microU/mL of insulin (Delta20-HETE= 2.84-0.054xinsulin-0.98xC; r(2)=0.53; F=11.1; P<0.001). Hence, genetic (T8590C) and environmental (insulin) factors impair 20-HETE responses to salt in human hypertension. We propose that genotype analyses with sufficient homozygous CC will establish definitive relationships among 20-HETE, salt sensitivity of blood pressure, and insulin resistance.
- Published
- 2008
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49. Interaction between substrate and oxygen ligand responsible for effective O-O bond cleavage in bovine cytochrome P450 steroid 21-hydroxylase proved by Raman spectroscopy.
- Author
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Tosha T, Kagawa N, Arase M, Waterman MR, and Kitagawa T
- Subjects
- Animals, Cattle, Hydrogen Peroxide metabolism, Hydrolysis, Ligands, Substrate Specificity, Oxygen metabolism, Spectrum Analysis, Raman methods, Steroid 21-Hydroxylase metabolism
- Abstract
We investigated structural and functional properties of bovine cytochrome P450 steroid 21-hydroxylase (P450c21), which catalyzes hydroxylation at C-21 of progesterone and 17alpha-hydroxyprogesterone. The uncoupled H(2)O(2) formation was higher in the hydroxylation of progesterone (26% of NADPH consumed) than that of 17alpha-hydroxyprogesterone (15% of NADPH consumed), indicating that 17alpha-hydroxyprogesterone can better facilitate the O-O bond scission. In relation to this, it is noted that the O-O stretching mode (nu(O-O)) of the oxygen complex of P450c21 was sensitive to the substrate; the progesterone- or 17alpha-hydroxyprogesterone-bound enzyme gave single (at 1137 cm(-1)) or split nu(O-O) bands (at 1124 and 1138 cm(-1)), respectively, demonstrating the presence of two forms for the latter. In contrast to nu(O-O), no corresponding difference was observed for the Fe-O(2) stretching mode between two different substrate-bound forms. The Fe-S(Cys) stretching mode in the ferric state was also identical (349 cm(-1)) for each substrate-bound form, suggesting that modulation through the axial thiolate by the substrate is unlikely. Therefore, it is deduced that the hydroxyl group at C-17 of 17alpha-hydroxyprogesterone forms a hydrogen bond with the terminal oxygen atom of the FeOO complex in one form, yielding a lower nu(O-O) frequency with higher reactivity for O-O cleavage, whereas the other form in which the substrate does not provide a hydrogen bond to the oxygen ligand is essentially the same between the two kinds of substrates. In the hydrogen-bonded species, the substrate changes the geometry of the FeOO moiety, thereby performing the hydroxylation reaction more effectively in 17alpha-hydroxyprogesterone than in progesterone.
- Published
- 2008
- Full Text
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50. Purification and functional characterization of human 11beta hydroxylase expressed in Escherichia coli.
- Author
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Zöllner A, Kagawa N, Waterman MR, Nonaka Y, Takio K, Shiro Y, Hannemann F, and Bernhardt R
- Subjects
- Chromatography, High Pressure Liquid, Circular Dichroism, Cytochrome P-450 CYP11B2 metabolism, Electrophoresis, Polyacrylamide Gel, Ferredoxins metabolism, Flavin-Adenine Dinucleotide metabolism, Humans, Kinetics, Mass Spectrometry, NADP metabolism, Oxidation-Reduction, Recombinant Proteins chemistry, Recombinant Proteins isolation & purification, Steroid 11-beta-Hydroxylase chemistry, Steroid 11-beta-Hydroxylase genetics, Substrate Specificity, Escherichia coli genetics, Recombinant Proteins metabolism, Steroid 11-beta-Hydroxylase metabolism
- Abstract
The human 11beta-hydroxylase (hCYP11B1) is responsible for the conversion of 11-deoxycortisol into the major mammalian glucocorticoid, cortisol. The reduction equivalents needed for this reaction are provided via a short electron transfer chain consisting of a [2Fe-2S] ferredoxin and a FAD-containing reductase. On the biochemical and biophysical level, little is known about hCYP11B1 because it is very unstable for analyses performed in vitro. This instability is also the reason why it has not been possible to stably express it so far in Escherichia coli and subsequently purify it. In the present study, we report on the successful and reproducible purification of recombinant hCYP11B1 coexpressed with molecular chaperones GroES/GroEL in E. coli. The protein was highly purified to apparent homogeneity, as observed by SDS/PAGE. Upon mass spectrometry, the mass-to-charge ratio (m/z) of the protein was estimated to be 55 761, which is consistent with the value 55 760.76 calculated for the form lacking the translational initiator Met. The functionality of hCYP11B1 was analyzed using different methods (substrate conversion assays, stopped-flow, Biacore). The results clearly demonstrate that the enzyme is capable of hydroxylating its substrates at position 11-beta. Moreover, the determined NADPH coupling percentage for the hCYP11B1 catalyzed reactions using either 11-deoxycortisol or 11-deoxycorticosterone as substrates was approximately 75% in both cases. Biacore and stopped-flow measurements indicate that hCYP11B1 possesses more than one binding site for its redox partner adrenodoxin, possibly resulting in the formation of more than one productive complexes. In addition, we performed CD measurements to obtain information about the structure of hCYP11B1.
- Published
- 2008
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