Search

Although powerful graph neural networks (GNNs) have boosted numerous real-world applications, the potential privacy risk is still underexplored. To close this gap, we perform the first comprehensive study of graph reconstruction attack that aims to reconstruct the adjacency of nodes. We show that a range of factors in GNNs can lead to the surprising leakage of private links. Especially by taking GNNs as a Markov chain and attacking GNNs via a flexible chain approximation, we systematically explore the underneath principles of graph reconstruction attack, and propose two information theory-guided mechanisms: (1) the chain-based attack method with adaptive designs for extracting more private information; (2) the chain-based defense method that sharply reduces the attack fidelity with moderate accuracy loss. Such two objectives disclose a critical belief that to recover better in attack, you must extract more multi-aspect knowledge from the trained GNN; while to learn safer for defense, you must forget more link-sensitive information in training GNNs. Empirically, we achieve state-of-the-art results on six datasets and three common GNNs. The code is publicly available at: https://github.com/tmlr-group/MC-GRA., Accepted by ICML 2023

Molecular property prediction is an important problem in drug discovery and materials science. As geometric structures have been demonstrated necessary for molecular property prediction, 3D information has been combined with various graph learning methods to boost prediction performance. However, obtaining the geometric structure of molecules is not feasible in many real-world applications due to the high computational cost. In this work, we propose a novel 3D pre-training framework (dubbed 3D PGT), which pre-trains a model on 3D molecular graphs, and then fine-tunes it on molecular graphs without 3D structures. Based on fact that bond length, bond angle, and dihedral angle are three basic geometric descriptors corresponding to a complete molecular 3D conformer, we first develop a multi-task generative pre-train framework based on these three attributes. Next, to automatically fuse these three generative tasks, we design a surrogate metric using the \textit{total energy} to search for weight distribution of the three pretext task since total energy corresponding to the quality of 3D conformer.Extensive experiments on 2D molecular graphs are conducted to demonstrate the accuracy, efficiency and generalization ability of the proposed 3D PGT compared to various pre-training baselines.

In recent years, Graph Neural Networks (GNNs) have been popular in graph representation learning which assumes the homophily property, i.e., the connected nodes have the same label or have similar features. However, they may fail to generalize into the heterophilous graphs which in the low/medium level of homophily. Existing methods tend to address this problem by enhancing the intra-class information extraction, i.e., either by designing better GNNs to improve the model effectiveness, or re-designing the graph structures to incorporate more potential intra-class nodes from distant hops. Despite the success, we observe two aspects that can be further improved: (a) enhancing the ego feature information extraction from node itself which is more reliable in extracting the intra-class information; (b) designing node-wise GNNs can better adapt to the nodes with different homophily ratios. In this paper, we propose a novel method IIE-GNN (Intra-class Information Enhanced Graph Neural Networks) to achieve two improvements. A unified framework is proposed based on the literature, in which the intra-class information from the node itself and neighbors can be extracted based on seven carefully designed blocks. With the help of neural architecture search (NAS), we propose a novel search space based on the framework, and then provide an architecture predictor to design GNNs for each node. We further conduct experiments to show that IIE-GNN can improve the model performance by designing node-wise GNNs to enhance intra-class information extraction.

Completing missing facts is a fundamental task for temporal knowledge graphs (TKGs). Recently, graph neural network (GNN) based methods, which can simultaneously explore topological and temporal information, have become the state-of-the-art (SOTA) to complete TKGs. However, these studies are based on hand-designed architectures and fail to explore the diverse topological and temporal properties of TKG. To address this issue, we propose to use neural architecture search (NAS) to design data-specific message passing architecture for TKG completion. In particular, we develop a generalized framework to explore topological and temporal information in TKGs. Based on this framework, we design an expressive search space to fully capture various properties of different TKGs. Meanwhile, we adopt a search algorithm, which trains a supernet structure by sampling single path for efficient search with less cost. We further conduct extensive experiments on three benchmark datasets. The results show that the searched architectures by our method achieve the SOTA performances. Besides, the searched models can also implicitly reveal diverse properties in different TKGs. Our code is released in https://github.com/striderdu/SPA., Accepted by Findings of EMNLP 2022

Feature extractor plays a critical role in text recognition (TR), but customizing its architecture is relatively less explored due to expensive manual tweaking. In this work, inspired by the success of neural architecture search (NAS), we propose to search for suitable feature extractors. We design a domain-specific search space by exploring principles for having good feature extractors. The space includes a 3D-structured space for the spatial model and a transformed-based space for the sequential model. As the space is huge and complexly structured, no existing NAS algorithms can be applied. We propose a two-stage algorithm to effectively search in the space. In the first stage, we cut the space into several blocks and progressively train each block with the help of an auxiliary head. We introduce the latency constraint into the second stage and search sub-network from the trained supernet via natural gradient descent. In experiments, a series of ablation studies are performed to better understand the designed space, search algorithm, and searched architectures. We also compare the proposed method with various state-of-the-art ones on both hand-written and scene TR tasks. Extensive results show that our approach can achieve better recognition performance with less latency.

Scoring function (SF) measures the plausibility of triplets in knowledge graphs. Different scoring functions can lead to huge differences in link prediction performances on different knowledge graphs. In this report, we describe a weird scoring function found by random search on the open graph benchmark (OGB). This scoring function, called AutoWeird, only uses tail entity and relation in a triplet to compute its plausibility score. Experimental results show that AutoWeird achieves top-1 performance on ogbl-wikikg2 data set, but has much worse performance than other methods on ogbl-biokg data set. By analyzing the tail entity distribution and evaluation protocol of these two data sets, we attribute the unexpected success of AutoWeird on ogbl-wikikg2 to inappropriate evaluation and concentrated tail entity distribution. Such results may motivate further research on how to accurately evaluate the performance of different link prediction methods for knowledge graphs.

Graph structured data is ubiquitous in daily life and scientific areas and has attracted increasing attention. Graph Neural Networks (GNNs) have been proved to be effective in modeling graph structured data and many variants of GNN architectures have been proposed. However, much human effort is often needed to tune the architecture depending on different datasets. Researchers naturally adopt Automated Machine Learning on Graph Learning, aiming to reduce the human effort and achieve generally top-performing GNNs, but their methods focus more on the architecture search. To understand GNN practitioners' automated solutions, we organized AutoGraph Challenge at KDD Cup 2020, emphasizing on automated graph neural networks for node classification. We received top solutions especially from industrial tech companies like Meituan, Alibaba and Twitter, which are already open sourced on Github. After detailed comparisons with solutions from academia, we quantify the gaps between academia and industry on modeling scope, effectiveness and efficiency, and show that (1) academia AutoML for Graph solutions focus on GNN architecture search while industrial solutions, especially the winning ones in the KDD Cup, tend to obtain an overall solution (2) by neural architecture search only, academia solutions achieve on average 97.3% accuracy of industrial solutions (3) academia solutions are cheap to obtain with several GPU hours while industrial solutions take a few months' labors. Academic solutions also contain much fewer parameters., arXiv admin note: text overlap with arXiv:2110.05802

Due to the popularity of Graph Neural Networks (GNNs), various GNN-based methods have been designed to reason on knowledge graphs (KGs). An important design component of GNN-based KG reasoning methods is called the propagation path, which contains a set of involved entities in each propagation step. Existing methods use hand-designed propagation paths, ignoring the correlation between the entities and the query relation. In addition, the number of involved entities will explosively grow at larger propagation steps. In this work, we are motivated to learn an adaptive propagation path in order to filter out irrelevant entities while preserving promising targets. First, we design an incremental sampling mechanism where the nearby targets and layer-wise connections can be preserved with linear complexity. Second, we design a learning-based sampling distribution to identify the semantically related entities. Extensive experiments show that our method is powerful, efficient, and semantic-aware. The code is available at https://github.com/LARS-research/AdaProp., Comment: accepted by KDD 2023

While hyper-parameters (HPs) are important for knowledge graph (KG) learning, existing methods fail to search them efficiently. To solve this problem, we first analyze the properties of different HPs and measure the transfer ability from small subgraph to the full graph. Based on the analysis, we propose an efficient two-stage search algorithm KGTuner, which efficiently explores HP configurations on small subgraph at the first stage and transfers the top-performed configurations for fine-tuning on the large full graph at the second stage. Experiments show that our method can consistently find better HPs than the baseline algorithms within the same time budget, which achieves {9.1\%} average relative improvement for four embedding models on the large-scale KGs in open graph benchmark., Accepted to ACL 2022 (long paper)

Reasoning on the knowledge graph (KG) aims to infer new facts from existing ones. Methods based on the relational path have shown strong, interpretable, and transferable reasoning ability. However, paths are naturally limited in capturing local evidence in graphs. In this paper, we introduce a novel relational structure, i.e., relational directed graph (r-digraph), which is composed of overlapped relational paths, to capture the KG's local evidence. Since the r- digraphs are more complex than paths, how to efficiently construct and effectively learn from them are challenging. Directly encoding the r-digraphs cannot scale well and capturing query-dependent information is hard in r-digraphs. We propose a variant of graph neural network, i.e., RED-GNN, to address the above challenges. Specifically, RED-GNN makes use of dynamic programming to recursively encodes multiple r-digraphs with shared edges, and utilizes a query-dependent attention mechanism to select the strongly correlated edges. We demonstrate that RED-GNN is not only efficient but also can achieve significant performance gains in both inductive and transductive reasoning tasks over existing methods. Besides, the learned attention weights in RED-GNN can exhibit interpretable evidence for KG reasoning.

Recently, a special kind of graph, i.e., supernet, which allows two nodes connected by multi-choice edges, has exhibited its power in neural architecture search (NAS) by searching for better architectures for computer vision (CV) and natural language processing (NLP) tasks. In this paper, we discover that the design of such discrete architectures also appears in many other important learning tasks, e.g., logical chain inference in knowledge graphs (KGs) and meta-path discovery in heterogeneous information networks (HINs). Thus, we are motivated to generalize the supernet search problem on a broader horizon. However, none of the existing works are effective since the supernet topology is highly task-dependent and diverse. To address this issue, we propose to tensorize the supernet, i.e., unify the subgraph search problems by a tensor formulation and encode the topology inside the supernet by a tensor network. We further propose an efficient algorithm that admits both stochastic and deterministic objectives to solve the search problem. Finally, we perform extensive experiments on diverse learning tasks, i.e., architecture design for CV, logic inference for KG, and meta-path discovery for HIN. Empirical results demonstrate that our method leads to better performance and architectures.

Classical machine learning implicitly assumes that labels of the training data are sampled from a clean distribution, which can be too restrictive for real-world scenarios. However, statistical-learning-based methods may not train deep learning models robustly with these noisy labels. Therefore, it is urgent to design Label-Noise Representation Learning (LNRL) methods for robustly training deep models with noisy labels. To fully understand LNRL, we conduct a survey study. We first clarify a formal definition for LNRL from the perspective of machine learning. Then, via the lens of learning theory and empirical study, we figure out why noisy labels affect deep models' performance. Based on the theoretical guidance, we categorize different LNRL methods into three directions. Under this unified taxonomy, we provide a thorough discussion of the pros and cons of different categories. More importantly, we summarize the essential components of robust LNRL, which can spark new directions. Lastly, we propose possible research directions within LNRL, such as new datasets, instance-dependent LNRL, and adversarial LNRL. We also envision potential directions beyond LNRL, such as learning with feature-noise, preference-noise, domain-noise, similarity-noise, graph-noise and demonstration-noise., The draft is kept updating; any comments and suggestions are welcome

Low-rank tensor completion problem aims to recover a tensor from limited observations, which has many real-world applications. Due to the easy optimization, the convex overlapping nuclear norm has been popularly used for tensor completion. However, it over-penalizes top singular values and lead to biased estimations. In this paper, we propose to use the nonconvex regularizer, which can less penalize large singular values, instead of the convex one for tensor completion. However, as the new regularizer is nonconvex and overlapped with each other, existing algorithms are either too slow or suffer from the huge memory cost. To address these issues, we develop an efficient and scalable algorithm, which is based on the proximal average (PA) algorithm, for real-world problems. Compared with the direct usage of PA algorithm, the proposed algorithm runs orders faster and needs orders less space. We further speed up the proposed algorithm with the acceleration technique, and show the convergence to critical points is still guaranteed. Experimental comparisons of the proposed approach are made with various other tensor completion approaches. Empirical results show that the proposed algorithm is very fast and can produce much better recovery performance.

Convolutional sparse coding (CSC) has been popularly used for the learning of shift-invariant dictionaries in image and signal processing. However, existing methods have limited scalability. In this paper, instead of convolving with a dictionary shared by all samples, we propose the use of a sample-dependent dictionary in which filters are obtained as linear combinations of a small set of base filters learned from the data. This added flexibility allows a large number of sample-dependent patterns to be captured, while the resultant model can still be efficiently learned by online learning. Extensive experimental results show that the proposed method outperforms existing CSC algorithms with significantly reduced time and space requirements., Accepted by ICML-2018

Convex regularizers are often used for sparse learning. They are easy to optimize, but can lead to inferior prediction performance. The difference of $\ell_1$ and $\ell_2$ ($\ell_{1-2}$) regularizer has been recently proposed as a nonconvex regularizer. It yields better recovery than both $\ell_0$ and $\ell_1$ regularizers on compressed sensing. However, how to efficiently optimize its learning problem is still challenging. The main difficulty is that both the $\ell_1$ and $\ell_2$ norms in $\ell_{1-2}$ are not differentiable, and existing optimization algorithms cannot be applied. In this paper, we show that a closed-form solution can be derived for the proximal step associated with this regularizer. We further extend the result for low-rank matrix learning and the total variation model. Experiments on both synthetic and real data sets show that the resultant accelerated proximal gradient algorithm is more efficient than other noncovex optimization algorithms.

Learning of low-rank matrices is fundamental to many machine learning applications. A state-of-the-art algorithm is the rank-one matrix pursuit (R1MP). However, it can only be used in matrix completion problems with the square loss. In this paper, we develop a more flexible greedy algorithm for generalized low-rank models whose optimization objective can be smooth or nonsmooth, general convex or strongly convex. The proposed algorithm has low per-iteration time complexity and fast convergence rate. Experimental results show that it is much faster than the state-of-the-art, with comparable or even better prediction performance.

The use of convex regularizers allows for easy optimization, though they often produce biased estimation and inferior prediction performance. Recently, nonconvex regularizers have attracted a lot of attention and outperformed convex ones. However, the resultant optimization problem is much harder. In this paper, for a large class of nonconvex regularizers, we propose to move the nonconvexity from the regularizer to the loss. The nonconvex regularizer is then transformed to a familiar convex regularizer, while the resultant loss function can still be guaranteed to be smooth. Learning with the convexified regularizer can be performed by existing efficient algorithms originally designed for convex regularizers (such as the proximal algorithm, Frank-Wolfe algorithm, alternating direction method of multipliers and stochastic gradient descent). Extensions are made when the convexified regularizer does not have closed-form proximal step, and when the loss function is nonconvex, nonsmooth. Extensive experiments on a variety of machine learning application scenarios show that optimizing the transformed problem is much faster than running the state-of-the-art on the original problem., Journal version of previous conference paper appeared at ICML-2016 with same title