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2. Spatial and temporal transmission dynamics of respiratory syncytial virus in New Zealand before and after the COVID-19 pandemic.

3. Building pangenome graphs.

4. Implementing a national programme of pathogen genomics for public health: the Australian Pathogen Genomics Program (AusPathoGen).

5. Impact of the COVID-19 related border restrictions on influenza and other common respiratory viral infections in New Zealand.

6. Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes.

7. Pangenome graphs in infectious disease: a comprehensive genetic variation analysis of Neisseria meningitidis leveraging Oxford Nanopore long reads.

8. Exploring the depth and breadth of the genomics toolbox during the COVID-19 pandemic: insights from Aotearoa New Zealand.

9. Tracing the international arrivals of SARS-CoV-2 Omicron variants after Aotearoa New Zealand reopened its border.

10. Genomic epidemiology of Delta SARS-CoV-2 during transition from elimination to suppression in Aotearoa New Zealand.

11. Airborne Transmission of SARS-CoV-2 Delta Variant within Tightly Monitored Isolation Facility, New Zealand (Aotearoa).

12. Review of potential risks associated with supplemental dietary exposure to nitrate-containing compounds in swine-a paradox in light of emerging benefits.

13. COVID-19 vaccine strategies for Aotearoa New Zealand: a mathematical modelling study.

14. Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch.

15. Real-Time Genomics for Tracking Severe Acute Respiratory Syndrome Coronavirus 2 Border Incursions after Virus Elimination, New Zealand.

16. Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nations.

17. Identification of novel human Wnt target genes using adult endodermal tissue-derived organoids.

18. Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand.

19. Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 during Border Quarantine and Air Travel, New Zealand (Aotearoa).

20. Genomic Evidence of In-Flight Transmission of SARS-CoV-2 Despite Predeparture Testing.

21. Lack of N2-gene amplification on the Cepheid Xpert Xpress SARS-CoV-2 assay and potential novel causative mutations: A case series from Auckland, New Zealand.

22. Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand.

23. An emergent clade of SARS-CoV-2 linked to returned travellers from Iran.

24. Nondetectable or minimal detectable residue levels of N-(n-butyl) thiophosphoric triamide in bovine tissues and milk from a 28-d NBPT dosing study.

25. The molecular genetic make-up of male breast cancer.

26. Deficiency of nucleotide excision repair is associated with mutational signature observed in cancer.

27. Long-term expanding human airway organoids for disease modeling.

28. Natural helix 9 mutants of PPARγ differently affect its transcriptional activity.

29. Scalable Workflows and Reproducible Data Analysis for Genomics.

30. A System-wide Approach to Monitor Responses to Synergistic BRAF and EGFR Inhibition in Colorectal Cancer Cells.

31. A Single Complex Agpat2 Allele in a Patient With Partial Lipodystrophy.

32. Cancer cells copy migratory behavior and exchange signaling networks via extracellular vesicles.

33. A Living Biobank of Breast Cancer Organoids Captures Disease Heterogeneity.

34. Mapping and phasing of structural variation in patient genomes using nanopore sequencing.

35. Unraveling genetic predisposition to familial or early onset gastric cancer using germline whole-exome sequencing.

36. Use of CRISPR-modified human stem cell organoids to study the origin of mutational signatures in cancer.

37. Genetic dissection of colorectal cancer progression by orthotopic transplantation of engineered cancer organoids.

38. Molecular dissection of germline chromothripsis in a developmental context using patient-derived iPS cells.

39. Novel mutations in LRP6 highlight the role of WNT signaling in tooth agenesis.

40. Tissue-specific mutation accumulation in human adult stem cells during life.

41. A high-quality human reference panel reveals the complexity and distribution of genomic structural variants.

42. The Genomic Scrapheap Challenge; Extracting Relevant Data from Unmapped Whole Genome Sequencing Reads, Including Strain Specific Genomic Segments, in Rats.

43. Novel genetic causes for cerebral visual impairment.

44. Cerebral visual impairment and intellectual disability caused by PGAP1 variants.

45. Allelic Mutations of KITLG, Encoding KIT Ligand, Cause Asymmetric and Unilateral Hearing Loss and Waardenburg Syndrome Type 2.

46. Next-generation sequencing-based genome diagnostics across clinical genetics centers: implementation choices and their effects.

48. Genomic landscape of rat strain and substrain variation.

49. Heterozygous germline mutations in A2ML1 are associated with a disorder clinically related to Noonan syndrome.

50. Long-term culture of genome-stable bipotent stem cells from adult human liver.

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