Search

Additional file 18. Demographic models created with Phylogeographic Inference Using Approximate Likelihoods (PHRAPL) to test the evolution of Psammolestes. (A) Divergence with no migration (B) Divergence with bidirectional migration between P. coreodes and P. tertius. (C) Divergence with bidirectional migration between P. tertius and P. arthuri. (D) divergence with bidirectional migration between P. tertius with P. coreodes, and P. tertius with P. arthuri. (E) Divergence with bidirectional migration between P. coreodes and P. arthuri. (F) Divergence with bidirectional migration between P. tertius with P. coreodes, and P. coreodes with P. arthuri. (G) Divergence with bidirectional migration between P. tertius with P. arthuri, and P. arthuri with P. coreodes (H) Divergence with bidirectional migration between the three Psammolestes species. Starting from this point, all of the demographic models include bidirectional migration between P. arthuri and the MRCA (most recent common ancestor) of P. tertius and P. coreodes. (I) Divergence with bidirectional migration between P. arthuri and the MRCA of P. tertius and P. coreodes. (J) Divergence with bidirectional migration between P. coreodes and P. tertius. (K) Divergence with bidirectional migration between P. tertius and P. arthuri. (L) divergence with bidirectional migration between P. tertius with P. coreodes and P. arthuri. (M) Divergence with bidirectional migration between P. coreodes and P. arthuri. (N) divergence with bidirectional migration between P. coreodes with P. tertius and P. arthuri. (O) Divergence with bidirectional migration between P. arthuri with P. coreodes and P. tertius. (P) Divergence with bidirectional migration between the three Psammolestes species. Support values for the demographic scenarios are shown under each figure.

Additional file 1. CYTB Phylogenetic reconstruction and Barrier test. (A) Phylogenetic reconstruction with the ML algorithm based on the mitochondrial marker CYTB (B) Barrier test algorithm based on molecular and geographical arrays. Bootstrap values on the internal nodes are shown in the following order: SH-aLRT/aBayes/ultrafast bootstrap support. Only nodes with bootstrap values higher than 60 are shown.

Additional file 10. Posterior probabilities on nodes, calculated by the mPTP algorithm.

Additional file 22. Individuals of Psammolestes species collected in this study.

Additional file 19. Linear correlations of Isolation by distance (IBD) test. (A) 28S (B) CISP (C) CYTB (D) LSM (E) TRNA (F) UPCA (G) PJH.

Additional file 6. TRNA Phylogenetic reconstruction and Barrier test. (A) Phylogenetic reconstruction with the ML algorithm based on the nuclear marker TRNA (B) Barrier test algorithm based on molecular and geographical arrays. Bootstrap values on the internal nodes are shown in the following order: SH-aLRT/aBayes/ultrafast bootstrap support. Only nodes with bootstrap values higher than 60 are shown.

Additional file 13. Heatmaps calculated for three different statistics: A) Fst, B) Dxy and C) Da for three species based on the molecular data obtained from the mitochondrial marker CYTB.

Additional file 5. LSM Phylogenetic reconstruction and Barrier test. (A) Phylogenetic reconstruction wit the ML algorithm based on the nuclear marker LSM (B) Barrier test algorithm based on molecular and geographical arrays. Bootstrap values on the internal nodes are shown in the following order: SH-aLRT/aBayes/ultrafast bootstrap support. Only nodes with bootstrap values higher than 60 are shown.

Additional file 23. Genes included in this study, the primers used to obtain their corresponding sequence, and the length of each one of them. ���*��� symbolizes a new marker used for the delimitation of the Psammolestes species.

Additional file 17. Heatmaps calculated for three different statistics: A) Fst, B) Dxy and C) Da for three species based on the molecular data obtained from the nuclear marker UPCA.

Additional file 24. GenBank accession numbers of seven loci analyzed in this study and samples origin included in this study.

Additional file 2. PJH Phylogenetic reconstruction and Barrier test (A) Phylogenetic reconstruction with the ML algorithm based on the nuclear marker PJH (B) Barrier test algorithm based on molecular and geographical arrays. Bootstrap values on the internal nodes are shown in the following order: SH-aLRT/aBayes/ultrafast bootstrap support. Only nodes with bootstrap values higher than 60 are shown.

Additional file 9. Bayesian inference phylogenetics tree for the locus CYTB obtained in *BEAST. Horizontal purple bars illustrate the 95% HPD for the nodes��� divergence time. Branch with a posterior probability above 0.95 are show

Additional file 15. Heatmaps calculated for three different statistics: A) Fst, B) Dxy and C) Da for three species based on the molecular data obtained from the nuclear marker PJH.

Additional file 8. Bayesian inference of species tree based on multilocus data (A) Maximum clade credibility tree based on Bayesian inference of the seven genes used in this study. The values observed represent posterior probabilities. (B) Bayesian species tree from multilocus data.

Additional file 21. Fit of the demographic models tested in.

Additional file 14. Heatmaps calculated for three different statistics: A) Fst, B) Dxy and C) Da for three species based on the molecular data obtained from the nuclear marker LSM.

Additional file 20. Mantel���s test for isolation by distance (IBD) and linear correlation results. The result of the Mantel���s test is shown in the two first columns of the table, and the results of the Pearson���s correlation test correspond to the third column. The last two columns show the results of the linear correlation tested between geographical and genetic distances.

Additional file 11. Heatmaps calculated for three different statistics: A) Fst, B) Dxy and C) Da for three species based on the molecular data obtained from the nuclear marker 28S.

Additional file 3. 28S Phylogenetic reconstruction and Barrier test (A) Phylogenetic reconstruction with the ML algorithm based on the nuclear marker 28S (B) Barrier test algorithm based on molecular and geographical arrays (B). Bootstrap values on the internal nodes are shown in the following order: SH-aLRT/aBayes/ultrafast bootstrap support. Only nodes with bootstrap values higher than 60 are shown.

Additional file 16. Heatmaps calculated for three different statistics: A) Fst, B) Dxy and C) Da for three species based on the molecular data obtained from the nuclear marker TRNA.

Additional file 12. Heatmaps calculated for three different statistics: A) Fst, B) Dxy and C) Da for three species based on the molecular data obtained from the nuclear marker CISP.

Additional file 4. CISP Phylogenetic reconstruction and Barrier test (A) Phylogenetic reconstruction with the ML algorithm based on the nuclear marker CISP (B) Barrier test algorithm based on molecular and geographical arrays. Bootstrap values on the internal nodes are shown in the following order: SH-aLRT/aBayes/ultrafast bootstrap support. Only nodes with bootstrap values higher than 60 are shown.