1. Single-cell transcriptomics reveal the dynamic of haematopoietic stem cell production in the aorta
- Author
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Valerie Kouskoff, Chloé S. Baron, Catherine Robin, Roshana Thambyrajah, Lennart Kester, Alexander van Oudenaarden, Jean Charles Boisset, Georges Lacaud, Anna Klaus, Laurent Yvernogeau, and Hubrecht Institute for Developmental Biology and Stem Cell Research
- Subjects
0301 basic medicine ,Chemistry(all) ,Cellular differentiation ,General Physics and Astronomy ,Cell Maturation ,Inbred C57BL ,Biochemistry ,Transcriptome ,Mice ,0302 clinical medicine ,Single-cell analysis ,Aorta/cytology ,Developmental ,Gene Regulatory Networks ,lcsh:Science ,Aorta ,Multidisciplinary ,Gene Expression Regulation, Developmental ,Cell Differentiation ,Cell biology ,Haematopoiesis ,Embryo ,Female ,Stem cell ,Single-Cell Analysis ,Cell signaling ,Hemangioblasts ,Science ,Biology ,Physics and Astronomy(all) ,General Biochemistry, Genetics and Molecular Biology ,Article ,03 medical and health sciences ,Animals ,Cell Lineage ,Transcription factor ,Hematopoietic Stem Cells/cytology ,Biochemistry, Genetics and Molecular Biology(all) ,Mammalian ,Molecular Sequence Annotation ,General Chemistry ,Embryo, Mammalian ,Hematopoietic Stem Cells ,Mice, Inbred C57BL ,030104 developmental biology ,Gene Ontology ,Gene Expression Regulation ,lcsh:Q ,Hemangioblasts/cytology ,030217 neurology & neurosurgery ,Genetics and Molecular Biology(all) - Abstract
Haematopoietic stem cells (HSCs) are generated from haemogenic endothelial (HE) cells via the formation of intra-aortic haematopoietic clusters (IAHCs) in vertebrate embryos. The molecular events controlling endothelial specification, endothelial-to-haematopoietic transition (EHT) and IAHC formation, as it occurs in vivo inside the aorta, are still poorly understood. To gain insight in these processes, we performed single-cell RNA-sequencing of non-HE cells, HE cells, cells undergoing EHT, IAHC cells, and whole IAHCs isolated from mouse embryo aortas. Our analysis identified the genes and transcription factor networks activated during the endothelial-to-haematopoietic switch and IAHC cell maturation toward an HSC fate. Our study provides an unprecedented complete resource to study in depth HSC generation in vivo. It will pave the way for improving HSC production in vitro to address the growing need for tailor-made HSCs to treat patients with blood-related disorders., Haematopoietic stem cells (HSCs) are generated from haemogenic endothelial (HE) cells in vertebrate embryo aortas. Here, the authors perform single-cell RNA-sequencing of cells isolated from embryonic mouse aortas to identify genes and transcription factor networks activated during the endothelial-to-haematopoietic switch.
- Published
- 2017
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