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Additional file 3. Peer review history.

Additional file 1: Figure S1. GFP-VIM1 localizes at the nucleus. Figure S2. Characterization of Arabidopsis thaliana VIM1 over-expression and vim1 homozygous T-DNA insertion lines. Figure S3. VIM1, VIM2 and VIM3 are differentially regulated in reponse to heat. Figure S4. APOLO and VIM1 regulate hypocotyle elongation in response to heat. Figure S5. Gene categories transcriptionally regulated in thermomorphogenesis. Figure S6. Epigenetic profile of the YUCCA2 locus. Figure S7. de novo DNA methylation and its maintenance regulate thermomorphogenesis. Figure S8. Bimolecular Fluorescence Complementation (BiFC) assay in transiently transformed Nicotiana benthamiana leaves. Figure S9. APOLO and UPAT lncRNAs share mechanisms of interaction with methylcytosine-binding proteins but no sequence similarity [133]. Figure S10. Constitutive expression of the lncRNA UPAT in Arabidopsis seedlings impairs YUCCA2 transcriptional accumulation. Figure S11. CRISPR/Cas9 strategy for APOLO deletion.