1. Supplemental Material for Keller et al., 2021
- Author
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Keller, Cheryl A., Wixom, Alexander Q., Heuston, Elisabeth F., Giardine, Belinda, Hsiung, Chris C.-S., Long, Maria R., Miller, Amber, Anderson, Stacie M., Cockburn, April, Blobel, Gerd A., Bodine, David M., and Hardison, Ross C.
- Subjects
FOS: Biological sciences ,Biological Techniques ,60408 Genomics ,60404 Epigenetics (incl. Genome Methylation and Epigenomics) - Abstract
Figure_S1 contains a protocol for the optimization of chromatin shearing.Figure_S2 contains a comparison of called peaks and % FRiP with overlapped-hc peaks and % FRiP-hc,respectively, for CTCF and TAL1.Figure_S3 contains a comparison of matched vs non-matched input control on the number of called peaks and FRiP scores in four retrospective TAL1 datasets. File_S1 contains detailed descriptions of supplemental File_S2 and Tables_S1-S4.File_S2 contains code used to analyze peaks and motifs.Table_S1 contains a list of datasets and metadata for all ChIP-seq samples. Table_S2 contains data on peaks and motifs statistics.Table_S3 contains a list of datasets and accompanying metadata for all input samples.Table_S4 contains isolation/sort markers, dates of collection, and cell numbers for hematopoietic progenitors. @font-face {font-family:"Cambria Math"; panose-1:2 4 5 3 5 4 6 3 2 4; mso-font-charset:0; mso-generic-font-family:roman; mso-font-pitch:variable; mso-font-signature:-536870145 1107305727 0 0 415 0;}p.MsoNormal, li.MsoNormal, div.MsoNormal {mso-style-unhide:no; mso-style-qformat:yes; mso-style-parent:""; margin:0in; mso-pagination:widow-orphan; font-size:12.0pt; font-family:"Times New Roman",serif; mso-fareast-font-family:"Times New Roman";}.MsoChpDefault {mso-style-type:export-only; mso-default-props:yes;}div.WordSection1 {page:WordSection1;}
- Published
- 2021
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