132 results on '"Chongxi Liu"'
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2. Novel Plant Growth Regulator Guvermectin from Plant Growth-Promoting Rhizobacteria Boosts Biomass and Grain Yield in Rice
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Chongxi Liu, Lu Bai, Peng Cao, Shanshan Li, Sheng-Xiong Huang, Jidong Wang, Lei Li, Ji Zhang, Junwei Zhao, Jia Song, Peng Sun, Yanyan Zhang, Hui Zhang, Xiaowei Guo, Xilang Yang, Xinqiu Tan, Wende Liu, Xiangjing Wang, and Wensheng Xiang
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General Chemistry ,General Agricultural and Biological Sciences - Abstract
Food is a fundamental human right, and global food security is threatened by crop production. Plant growth regulators (PGRs) play an essential role in improving crop yield and quality, and this study reports on a novel PGR, termed guvermectin (GV), isolated from plant growth-promoting rhizobacteria, which can promote root and coleoptile growth, tillering, and early maturing in rice. GV is a nucleoside analogue like cytokinin (CK), but it was found that GV significantly promoted root and hypocotyl growth, which is different from the function of CK in
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- 2022
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3. Sphaerisporangium perillae sp. nov., isolated from the root of Perilla frutescens (Linn.) Britt
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Teng Wang, Congting Gao, Hongmin Chen, Jingquan Yang, Rui Du, Gengxin Zuo, Junwei Zhao, Wensheng Xiang, and Chongxi Liu
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General Medicine ,Microbiology ,Ecology, Evolution, Behavior and Systematics - Abstract
A novel protease-producing actinomycete, designated strain NEAU-ZS1T, was isolated from the root of Perilla frutescens (Linn.) Britt collected from Jiamusi, Heilongjiang, PR China. Comparative 16S rRNA gene sequencing showed that strain NEAU-ZS1T belonged to the genus Sphaerisporangium and was most closely related to ‘ Sphaerisporangium corydalis ’ NEAU-YHS15T (99.2%) and Sphaerisporangium cinnabarinum JCM 3291T (99.0%). Phylogenetic tree analysis revealed that strain NEAU-ZS1T formed a monophyletic clade with ‘ S. corydalis ’ NEAU-YHS15T. The genome size was 9.3 Mbp with a DNA G+C content of 70.3 mol%. Digital DNA–DNA hybridization, average nucleotide identity and average amino acid identity values between the genome sequence of strain NEAU-ZS1T and those of ‘ S. corydalis ’ NEAU-YHS15T (28.6, 83.9 and 79.1 %) and S. cinnabarinum JCM 3291T (18.5, 70.6 and 50.2 %) were below the recommended thresholds for species delineation. The strain formed spherical spore vesicles produced on the aerial hyphae. The cell wall contained meso-diaminopimelic acid and the whole-cell sugars were glucose and madurose. The polar lipids consisted of diphosphatidylglycerol, phosphatidylmethylethanolamine, phosphatidylethanolamine, phosphatidylinositol, an unidentified phospholipid and an unidentified glycolipid. The menaquinones were MK-9(H4), MK-9(H6) and MK-9(H2). The major fatty acids were iso-C16 : 0, C16 : 1 ω5c, 10-methy C17 : 0 and C17 : 1 ω7c. On the basis of the results of a polyphasic taxonomic study, it is concluded that strain NEAU-ZS1T represents a novel species of the genus Sphaerisporangium , for which the name Sphaerisporangium perillae sp. nov. is proposed. The type strain is NEAU-ZS1T (=CCTCC AA 2021019T= JCM 35655T).
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- 2023
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4. Mumia quercus sp. nov., isolated from the root of Quercus variabilis
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Hongmin Chen, Tingting Cao, Teng Wang, Congting Gao, Jingquan Yang, Qingyan Dong, Yue Shen, and Chongxi Liu
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General Medicine ,Microbiology ,Ecology, Evolution, Behavior and Systematics - Abstract
A novel endophytic actinomycete, designated strain NEAU-365T, was isolated from the root of Quercus variabilis collected from Nanjing, Jiangsu, PR China. Comparative 16S rRNA gene sequencing showed that strain NEAU-365T belonged to the genus Mumia but clearly differs from the currently recognized species Mumia zhuanghuii Z350T (99.31 %), Mumia xiangluensis NEAU-KD1T (98.82 %) and Mumia flava MUSC 201T (97.78 %). Phylogenetic tree analysis revealed that strain NEAU-365T clustered with the type strains of the genus Mumia . The genome size was 4.1 Mbp with a DNA G+C content of 71.2 mol%. Digital DNA–DNA hybridization and average nucleotide identity values between the genome sequence of strain NEAU-365T and those of M. zhuanghuii Z350T(27.5 and 84.0 %), M. xiangluensis NEAU-KD1T(23.4 and 80.9 %) and M. flava MUSC 201T(20.9 and 77.7 %) were below the recommended thresholds for species delineation. Cells were observed to be irregular cocci shaped. The cell wall contained ll-diaminopimelic acid and the whole-cell sugars were galactose and rhamnose. The polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphoglycolipid and three unidentified phospholipids. The predominant menaquinone was detected as MK-9(H4). The major fatty acids were C16 : 0, C18 : 0, C18 : 1 ω9c and 10-methyl C18 : 0. On the basis of genotypic and phenotypic differences from members of the genus Mumia , a novel species, Mumia quercus sp. nov. is proposed. The type strain is NEAU-365T (=CCTCC AA 2021033T=JCM 35005T).
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- 2023
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5. In vitro embryo formation and plantlet regeneration from unpollinated ovaries of Lilium L
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Zhengguang Zhai, Chongxi Liu, Songqing Huang, Pengfei Xie, Qingfu Zhang, Song Guo, Hailin Cai, Yufan Li, Ruidong Jia, Yanfang Cai, Jiren Chen, and Wei‐ai Zeng
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Agronomy and Crop Science - Published
- 2022
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6. Isolation and Biosynthesis of Phenazine–Polyketide Hybrids from Streptomyces sp. KIB-H483
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Zhiyan Wang, Feng-Xian Yang, Chongxi Liu, Li Wang, Yuxin Qi, Minghang Cao, Xiaowei Guo, Jie Li, Xueshuang Huang, Jing Yang, and Sheng-Xiong Huang
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Pharmacology ,Complementary and alternative medicine ,Organic Chemistry ,Drug Discovery ,Pharmaceutical Science ,Molecular Medicine ,Analytical Chemistry - Published
- 2022
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7. Discovery and biosynthesis of karnamicins as angiotensin converting enzyme inhibitors
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Zhiyin Yu, Jian-Ping Huang, Jing Yang, Chongxi Liu, Yijun Yan, Li Wang, Junwei Zhao, Yin Chen, Wensheng Xiang, and Sheng-Xiong Huang
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Multidisciplinary ,General Physics and Astronomy ,General Chemistry ,General Biochemistry, Genetics and Molecular Biology - Abstract
Angiotensin-converting enzyme inhibitors are widely used for treatment of hypertension and related diseases. Here, six karnamicins E1-E6 (1–6), which bear fully substituted hydroxypyridine and thiazole moieties are characterized from the rare actinobacterium Lechevalieria rhizosphaerae NEAU-A2. Through a combination of isotopic labeling, genome mining, and enzymatic characterization studies, the programmed assembly of the fully substituted hydroxypyridine moiety in karnamicin is proposed to be due to sequential operation of a hybrid polyketide synthase-nonribosomal peptide synthetase, two regioselective pyridine ring flavoprotein hydroxylases, and a methyltransferase. Based on AlphaFold protein structures predictions, molecular docking, and site-directed mutagenesis, we find that two pyridine hydroxylases deploy active site residues distinct from other flavoprotein monooxygenases to direct the chemo- and regioselective hydroxylation of the pyridine nucleus. Pleasingly, karnamicins show significant angiotensin-converting enzyme inhibitory activity with IC50 values ranging from 0.24 to 5.81 μM, suggesting their potential use for the treatment of hypertension and related diseases.
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- 2023
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8. The Transcription Factors WRKY41 and WRKY53 Mediate Early Flowering Induced by the Novel Plant Growth Regulator Guvermectin in Arabidopsis thaliana
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Chenyu Yang, Chongxi Liu, Shanshan Li, Yanyan Zhang, Yi Zhang, Xiangjing Wang, and Wensheng Xiang
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Inorganic Chemistry ,Organic Chemistry ,General Medicine ,Physical and Theoretical Chemistry ,Molecular Biology ,guvermectin ,flowering ,WRKY41 ,WRKY53 ,SOC1 ,LFY ,Spectroscopy ,Catalysis ,Computer Science Applications - Abstract
Flowering is a crucial stage for plant reproductive success; therefore, the regulation of plant flowering has been widely researched. Although multiple well-defined endogenous and exogenous flowering regulators have been reported, new ones are constantly being discovered. Here, we confirm that a novel plant growth regulator guvermectin (GV) induces early flowering in Arabidopsis. Interestingly, our genetic experiments newly demonstrated that WRKY41 and its homolog WRKY53 were involved in GV-accelerated flowering as positive flowering regulators. Overexpression of WRKY41 or WRKY53 resulted in an early flowering phenotype compared to the wild type (WT). In contrast, the w41/w53 double mutants showed a delay in GV-accelerated flowering. Gene expression analysis showed that flowering regulatory genes SOC1 and LFY were upregulated in GV-treated WT, 35S:WRKY41, and 35S:WRKY53 plants, but both declined in w41/w53 mutants with or without GV treatment. Meanwhile, biochemical assays confirmed that SOC1 and LFY were both direct targets of WRKY41 and WRKY53. Furthermore, the early flowering phenotype of 35S:WRKY41 lines was abolished in the soc1 or lfy background. Together, our results suggest that GV plays a function in promoting flowering, which was co-mediated by WRKY41 and WRKY53 acting as new flowering regulators by directly activating the transcription of SOC1 and LFY in Arabidopsis.
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- 2023
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9. Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.)
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Congting Gao, Chongxi Liu, Wensheng Xiang, Sheng-Xiong Huang, Junwei Zhao, Chenghui Peng, Xiaoxin Zhuang, and Zhiyan Wang
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DNA, Bacterial ,China ,Antifungal Agents ,Streptomyces alboflavus ,Diamino acid ,Typhaceae ,Microbiology ,Streptomyces ,03 medical and health sciences ,chemistry.chemical_compound ,RNA, Ribosomal, 16S ,Botany ,Streptomyces flavofungini ,Molecular Biology ,Phospholipids ,Phylogeny ,Streptomyces aureoverticillatus ,030304 developmental biology ,Base Composition ,0303 health sciences ,Strain (chemistry) ,biology ,030306 microbiology ,Fatty Acids ,Vitamin K 2 ,Sequence Analysis, DNA ,General Medicine ,Ribosomal RNA ,biology.organism_classification ,Actinobacteria ,chemistry ,Typha angustifolia - Abstract
A novel endophytic actinomycete with antagonistic activity against various phytopathogenic fungi, designated strain p1417T, was isolated from the root of cattail (Typha angustifolia L.) collected from Yunnan Province, Southwest China. A polyphasic taxonomic study was carried out to establish the taxonomic status of this strain. Strain p1417T was found to have morphological and chemotaxonomic characteristics typical of the genus Streptomyces. The diamino acid present in the cell wall was LL-diaminopimelic acid. Xylose and arabinose occurred in whole cell hydrolysates. The menaquinones were identified as MK-9(H8), MK-9(H6) and MK-9(H4). The polar lipid profile was found to contain diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. The major fatty acids were found to be iso-C16:0, anteiso-C15:0, iso-C15:0 and C16:0. The genomic DNA G + C content of strain p1417T based on the genome sequence was 72.0 mol%. Based on 16 S rRNA gene, five housekeeping genes and whole genome sequences analysis, strain p1417T was most closely related to Streptomyces flavofungini JCM 4753T (99.4% 16 S rRNA gene sequence similarity), Streptomyces alboflavus JCM 4615T (98.8%) and Streptomyces aureoverticillatus JCM 4347T (98.2%). However, the average nucleotide identity values, the digital DNA–DNA hybridization values and the multilocus sequence analysis evolutionary distances between this strain and its closely related strains showed that it belonged to one distinct species. In addition, these results were also supported by differences in the phenotypic and chemotaxonomic characteristics between strain p1417T and three closely related type strains. Therefore, it is concluded that strain p1417T represents a novel species of the genus of Streptomyces, for which the name Streptomyces typhae sp. nov. is proposed. The type strain is p1417T (= CCTCC AA 2019091T = DSM 110636T).
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- 2021
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10. Discovery of Frenolicin B as Potential Agrochemical Fungicide for Controlling Fusarium Head Blight on Wheat
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Sheng-Xiong Huang, Zhiyin Yu, Yuting Zhang, Chongxi Liu, Wensheng Xiang, Zhiyan Wang, Junwei Zhao, Ziyue Wen, Zhonghua Ma, and Chuanyu Han
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Fusarium ,biology ,Strain (chemistry) ,Carbendazim ,food and beverages ,General Chemistry ,biology.organism_classification ,Streptomyces ,Microbiology ,Fungicide ,chemistry.chemical_compound ,chemistry ,Phosphorus utilization ,General Agricultural and Biological Sciences ,Mycelium ,EC50 - Abstract
In this study, the supernatant extract from fermentation broth of Streptomyces sp. NEAU-H3 showed strong antifungal activity against Fusarium graminearum strain PH-1 in vitro and in vivo. Three known pyranonaphthoquinones were isolated by means of an activity-guided method, and frenolicin B was characterized as the main active ingredient. Frenolicin B displayed strong antifungal activity against F. graminearum strain PH-1 with an EC50 value of 0.51 mg/L, which is lower than that of carbendazim (0.78 mg/L) but higher than that of phenamacril (0.18 mg/L). Frenolicin B could also strongly inhibit the mycelial growth of Fusarium species, including F. graminearum and F. asiaticum, as well as carbendazim-resistant Fusarium strains isolated from field, with EC50 values of 0.25-0.92 mg/L. Results from field experiments showed that the efficacy of frenolicin B in controlling Fusarium head blight at a treatment concentration of 75 g ai/ha was better than those of phenamacril (375 g ai/ha) and carbendazim (600 g ai/ha) or had no significant difference with that of phenamacril (375 g ai/ha) in 2 years. Scanning electron microscope and transmission electron microscope observations revealed that after treating F. graminearum mycelia with frenolicin B, the mycelia appeared aberrant and had an uneven thickness and swelling, the cytoplasm had disintegrated, and some cell contents were lost. Transcriptome analysis suggests that frenolicin B might inhibit the metabolism of nucleotides and energy by affecting genes involved in phosphorus utilization but did not affect the expression of myosin 5, which is the specific target of phenamacril. These findings indicate that frenolicin B may be a potential agrochemical fungicide for controlling Fusarium head blight.
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- 2021
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11. Isolation and Biosynthesis of Phenazine-Polyketide Hybrids from
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Zhiyan, Wang, Feng-Xian, Yang, Chongxi, Liu, Li, Wang, Yuxin, Qi, Minghang, Cao, Xiaowei, Guo, Jie, Li, Xueshuang, Huang, Jing, Yang, and Sheng-Xiong, Huang
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Multigene Family ,Polyketides ,Phenazines ,Streptomyces - Abstract
A phenazine-polyketide hybrid compound, nexphenazine A (
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- 2022
12. Nonomuraea typhae sp. nov., an endophytic actinomycete isolated from the root of cattail pollen (Typha angustifolia L.)
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Zhiyan Wang, Xiaoxin Zhuang, Chongxi Liu, Junwei Zhao, Yue Shen, Congting Gao, Chenghui Peng, and Jia Song
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Strain (chemistry) ,General Medicine ,Biology ,16S ribosomal RNA ,biology.organism_classification ,Microbiology ,Actinobacteria ,Spore ,chemistry.chemical_compound ,chemistry ,Phylogenetics ,Botany ,Diaminopimelic acid ,Typha angustifolia ,Ecology, Evolution, Behavior and Systematics ,Mycelium - Abstract
A novel endophytic actinomycete, designated strain p1410T, was isolated from the root of cattail pollen (Typha angustifolia L.) and characterized using a polyphasic approach. The strain had morphological characteristics and chemotaxonomic properties identical to those of members of the genus Nonomuraea . It produced spiral chains of spores on aerial mycelium as well as forming a pseudosporangium. Whole-cell hydrolysates contained meso-diaminopimelic acid, glucose, ribose and madurose. The menaquinones detected were MK-9(H2), MK-9(H4) and MK-9(H0). The major fatty acids were 10-methyl C17 : 0, iso-C16 : 0 and C17 : 0. The polar lipids were diphosphatidylglycerol, phosphatidylmethylethanolamine, phosphatidylethanolamine, hydroxyphosphatidylethanolamine, phosphatidylinositol mannoside and an unknown glycolipid. The DNA G+C content of the draft genome sequence, consisting of 11.4 Mbp, was 70.9 mol%. Phylogenetic analysis of 16S rRNA gene sequences showed that strain p1410T belongs to the genus Nonomuraea with the highest sequence similarity to Nonomuraea candida HMC10T (98.6 %), but phylogenetically clustered with Nonomuraea endophytica YIM 65601T (98.4 %) and Nonomuraea longicatena NRRL 15532T (98.3 %). Based on its phenotypic characteristics, DNA–DNA relatedness and average nucleotide identity, the strain is considered to represent a novel species of the genus Nonomuraea , for which the name Nonomuraea typhae sp. nov. is proposed. The type strain is p1410T (=CCTCC AA 2019044T=JCM 33461T).
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- 2020
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13. <scp>B</scp> aia
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Chongxi Liu, Xuejiao Guan, and Wensheng Xiang
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- 2019
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14. A unique spiro-β-triazinedione-γ-hydantoin type alkaloid with antiviral activity against tobacco mosaic virus from Streptomyces gamaensis
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Xiaowei Guo, Wensheng Xiang, Chongxi Liu, Xiangjing Wang, Jiansong Li, Can Su, Xiao-Yan Ma, Zhiyin Yu, Jidong Wang, and Sheng-Xiong Huang
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biology ,Strain (chemistry) ,010405 organic chemistry ,Stereochemistry ,Alkaloid ,fungi ,Organic Chemistry ,food and beverages ,Hydantoin ,010402 general chemistry ,biology.organism_classification ,01 natural sciences ,Streptomyces ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Chemical conversion ,Tobacco mosaic virus ,Host plants - Abstract
Chemical investigation of a soil actinomycete strain Streptomyces gamaensis NEAU-Gz11 led to the isolation of three alkaloids 1–3 with antiviral activity. Their structures were determined by extensive spectroscopic and X-ray crystallographic analyses. Compound 1 possesses a new and unique spiro-β-triazinedione-γ-hydantoin skeleton. The racemic feature and the chemical conversion experiments led us to propose a biosynthetic pathway for 1. Compound 1 (100 mg L−1) showed a strong anti-TMV (tobacco mosaic virus, TMV) activity on the host plants of tomatoes and peppers with inhibition rates of 72.34% and 62.09%, respectively.
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- 2019
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15. Characterization of a Novel Endophytic Actinomycete
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Xiaoxin, Zhuang, Congting, Gao, Chenghui, Peng, Zhiyan, Wang, Junwei, Zhao, Yue, Shen, and Chongxi, Liu
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antagonistic activity ,Ralstonia solanacearum ,biocontrol ,Article ,moss ,Streptomyces physcomitrii sp. nov - Abstract
Bacterial wilt of tomato is a destructive disease caused by Ralstonia solanacearum throughout the world. An endophytic actinomycete with antagonistic activity, designated strain LD120T, was isolated from moss (Physcomitrium sphaericum (Ludw) Fuernr). The biocontrol test demonstrated that co-inoculation by the isolate and the pathogen gave the greatest biocontrol efficiency of 63.6%. Strain LD120T had morphological characteristics and chemotaxonomic properties identical to those of members of the genus Streptomyces. The diamino acid present in the cell wall was LL-diaminopimelic acid. Arabinose, glucose, rhamnose, and ribose occured in whole cell hydrolysates. The menaquinones detected were MK-9(H4), MK-9(H6), MK-9(H8), and MK-9(H2). The polar lipid profile was found to contain diphosphatidylglycerol, phosphatidylethanolamine, and phosphatidylinositol. The major cellular fatty acids were found to be iso-C16:0, iso-C17:0, anteiso-C15:0, and C16:1 ω7c. The DNA G+C content of the draft genome sequence, consisting of 7.6 Mbp, was 73.1%. Analysis of the 16S rRNA gene sequence showed that strain LD120T belongs to the genus Streptomyces, with the highest sequence similarity to Streptomyces azureus NRRL B-2655T (98.97%), but phylogenetically clustered with Streptomyces anandii NRRL B-3590T (98.62%). Multilocus sequence analysis based on five other house-keeping genes (atpD, gyrB, rpoB, recA, and trpB) and the low level of DNA–DNA relatedness, as well as phenotypic differences, allowed strain LD120T to be differentiated from its closely related strains. Therefore, the strain was concluded to represent a novel species of the genus Streptomyces, for which the name Streptomyces physcomitrii sp. nov. was proposed. The type strain was LD120T (=CCTCC AA 2018049T = DSM 110638T).
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- 2020
16. Corrigendum: Dimeric Pimprinine Alkaloids From Soil-Derived Streptomyces sp. NEAU-C99
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Jian-Ping Huang, Chongxi Liu, Xiaowei Guo, Hao Jiang, Feng-Xian Yang, Li Wang, Sheng-Xiong Huang, Zhiyin Yu, and Wensheng Xiang
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pimprinine ,biology ,Chemistry ,Stereochemistry ,General Chemistry ,alkaloids ,biology.organism_classification ,Pimprinine ,Streptomyces ,structural characterization ,lcsh:Chemistry ,Streptomyces sp. NEAU ,lcsh:QD1-999 ,cytotoxicity - Published
- 2020
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17. Corrigendum: Dimeric Pimprinine Alkaloids From Soil-Derived Streptomyces sp. NEAU-C99
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Chongxi Liu, Jian-Ping Huang, Li Wang, Xiaowei Guo, Hao Jiang, Wensheng Xiang, Sheng-Xiong Huang, Zhiyin Yu, and Feng-Xian Yang
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pimprinine ,Stereochemistry ,Tumor cells ,02 engineering and technology ,alkaloids ,010402 general chemistry ,Pimprinine ,01 natural sciences ,Streptomyces ,lcsh:Chemistry ,Streptomyces sp. NEAU ,Ic50 values ,Cytotoxicity ,Original Research ,biology ,Chemistry ,Correction ,General Chemistry ,021001 nanoscience & nanotechnology ,biology.organism_classification ,structural characterization ,0104 chemical sciences ,lcsh:QD1-999 ,cytotoxicity ,0210 nano-technology - Abstract
Six new pimprinine alkaloids (1–6), including four dimers, dipimprinines A–D (1–4), and two monomers, (±)-Pimprinol D (5), and pimprinone A (6), along with six known congeners (7–12), were isolated from a soil-derived actinomycete Streptomyces sp. NEAU-C99. Structures of the new compounds were elucidated by extensive spectroscopic analyses, single-crystal X-ray diffractions, and ECD calculations. Dipimprinines A–D (1–4) showed weak cytotoxic activities against five tumor cell lines, including HL-60, SMMC-7721, A-549, MCF-7, and SW-480, with IC50 values ranging from 12.7 to 30.7 μM.
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- 2020
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18. Streptomyces flavalbus sp. nov., an actinobacterium isolated from rhizosphere of maize (Zea mays L.)
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Yanjie Li, Xiangjing Wang, Liying Jin, Chongxi Liu, Xueli Zhao, Junwei Zhao, Yibo Shen, Tingting Cao, and Wensheng Xiang
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DNA, Bacterial ,0301 basic medicine ,Streptomyces lanatus ,Zea mays ,Microbiology ,Streptomyces ,Streptomyces lannensis ,Cell wall ,03 medical and health sciences ,RNA, Ribosomal, 16S ,Botany ,Molecular Biology ,Phospholipids ,Phylogeny ,Soil Microbiology ,Rhizosphere ,biology ,Strain (chemistry) ,Fatty Acids ,General Medicine ,Ribosomal RNA ,biology.organism_classification ,16S ribosomal RNA ,030104 developmental biology - Abstract
A novel actinobacterium, designated strain NEAU-QY24T, was isolated from the rhizosphere of corn (Zea mays L.). A polyphasic approach was employed to determine the taxonomic status of strain NEAU-QY24T. The isolate was found to have chemical and morphological properties of the genus Streptomyces, with high 16S rRNA gene sequence similarity to Streptomyces lanatus JCM 4332T (98.3%) and clustered phylogenetically with Streptomyces lannensis JCM 16578T (98.2%). The cell wall was found to contain meso-diaminopimelic acid and the whole cell sugars were identified as glucose and ribose. The predominant menaquinones were identified as MK-9(H6), MK-9(H4) and MK-9(H8). The phospholipid profile was found to consisted of diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol. The major fatty acids were identified as iso-C16:0, C16:0, anteiso-C17:0 and C15:0. A combination of DNA–DNA hybridization experiments and phenotypic tests were carried out between strain NEAU-QY24T and its closely related strains, which clarified their relatedness and demonstrated that strain NEAU-QY24T could be distinguished from these strains. These data indicate that the isolate should be recognised as a new species of the genus Streptomyces, for which the name Streptomyces flavalbus sp. nov. is proposed. The type strain is NEAU-QY24T (= CGMCC 4.7400T = DSM 104539T).
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- 2018
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19. Streptomyces capitiformicae sp. nov., a novel actinomycete producing angucyclinone antibiotics isolated from the head of Camponotus japonicus Mayr
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Peng Cao, Shanwen Jiang, Mutong Li, Chongxi Liu, Yang Yu, Fan Yang, Chenyu Piao, Chenxu Li, and Wensheng Xiang
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DNA, Bacterial ,0301 basic medicine ,China ,Streptomyces torulosus ,Anthraquinones ,DNA, Ribosomal ,Microbiology ,Streptomyces ,03 medical and health sciences ,RNA, Ribosomal, 16S ,Animals ,Camponotus japonicus ,Phospholipids ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Base Composition ,biology ,Strain (chemistry) ,Ants ,Fatty Acids ,Nucleic Acid Hybridization ,Streptomyces ipomoeae ,Sequence Analysis, DNA ,General Medicine ,biology.organism_classification ,16S ribosomal RNA ,Anti-Bacterial Agents ,Bacterial Typing Techniques ,030104 developmental biology ,Streptomyces decoyicus ,Streptomyces hygroscopicus - Abstract
A novel actinomycete, designated strain 1H-SSA4T, was isolated from the head of an ant (Camponotus japonicus Mayr) and was found to produce angucyclinone antibiotics. A polyphasic approach was used to determine the taxonomic status of strain 1H-SSA4T. The DNA G+C content of the draft genome sequence, consisting of 11.4 Mbp, was 70.0 mol%. 16S rRNA gene sequence similarity studies showed that strain 1H-SSA4T belongs to the genus Streptomyces with the highest sequence similarity to Streptomyces hygroscopicus subsp. ossamyceticus NBRC 13983T (98.9 %), and phylogenetically clustered with this species, Streptomyces torulosus LMG 20305T (98.8 %), Streptomyces ipomoeae NBRC 13050T (98.5 %) and Streptomyces decoyicus NRRL 2666T (98.4 %). The morphological and chemotaxonomic properties of the strain were also consistent with those members of the genus Streptomyces . A combination of DNA–DNA hybridization experiments and phenotypic tests were carried out between strain 1H-SSA4T and the above-mentioned strains, which further clarified their relatedness and demonstrated that strain 1H-SSA4T could be distinguished from these strains. Therefore, the strain is concluded to represent a novel species of the genus Streptomyces , for which the name Streptomyces capitiformicae sp. nov. is proposed. The type strain is 1H-SSA4T (=CGMCC 4.7403T=DSM 104537T).
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- 2018
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20. Glycomyces tritici sp. nov., isolated from rhizosphere soil of wheat (Triticum aestivum L.) and emended description of the genus Glycomyces
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Tianyu Sun, Chongxi Liu, Liping Duan, Wei Song, Xiaowei Guo, Xiangjing Wang, Wensheng Xiang, Junwei Zhao, and Wenchao Li
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DNA, Bacterial ,0301 basic medicine ,030106 microbiology ,Xylose ,Biology ,Microbiology ,Cell wall ,Soil ,03 medical and health sciences ,chemistry.chemical_compound ,RNA, Ribosomal, 16S ,Botany ,Molecular Biology ,Phylogeny ,Soil Microbiology ,Triticum ,Rhizosphere ,Strain (chemistry) ,Fatty Acids ,food and beverages ,General Medicine ,Ribosomal RNA ,16S ribosomal RNA ,Actinobacteria ,030104 developmental biology ,chemistry ,Galactose ,Taxonomy (biology) - Abstract
A novel actinomycete strain, designated NEAU-C2T, was isolated from rhizosphere soil of wheat (Triticum aestivum L.), and subjected to a polyphasic taxonomic study. Morphological and chemotaxonomic properties of this strain were consistent with the description of the genus Glycomyces. Growth was found to occur at a temperature range of 15–40 °C, pH 6–10 and NaCl concentrations of 0–4%. The cell wall was found to contain meso-diaminopimelic acid and the whole cell sugars were identified as galactose, xylose and ribose. The predominant menaquinones were identified as MK-10(H6) and MK-10(H2). The polar lipids were found to consist of diphosphatidylglycerol, phosphatidylinositol, phosphatidylglycerol, phosphoglycolipids and an unidentified glycolipid. The major fatty acids were identified as anteiso-C15:0, iso-C16:0, anteiso-C17:0 and iso-C15:0. 16S rRNA gene sequence similarity studies showed that strain NEAU-C2T belongs to the genus Glycomyces with high sequence similarity to Glycomyces algeriensis NRRL B-16327T (99.0% sequence similarity). Some physiological and biochemical properties and low DNA–DNA relatedness values enabled the strain to be differentiated from closely related species of the genus Glycomyces. It is concluded that the isolate can be classified as representing a novel species of the genus Glycomyces, for which the name Glycomyces tritici is proposed. The type strain is NEAU-C2T (= DSM 104644T = CGMCC 4.7410T).
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- 2017
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21. Streptomyces amphotericinicus sp. nov., an amphotericin-producing actinomycete isolated from the head of an ant (Camponotus japonicus Mayr)
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Dongmei Li, Wensheng Xiang, Shan Mu, Chongxi Liu, Kai Yan, Shanshan Zhao, Tingting Cao, and Chang Lu
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DNA, Bacterial ,0301 basic medicine ,China ,Microbiology ,Streptomyces ,03 medical and health sciences ,Amphotericin B ,RNA, Ribosomal, 16S ,Animals ,Camponotus japonicus ,Phospholipids ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Base Composition ,Streptomyces ramulosus ,biology ,Strain (chemistry) ,Ants ,Fatty Acids ,Vitamin K 2 ,Sequence Analysis, DNA ,General Medicine ,rpoB ,biology.organism_classification ,16S ribosomal RNA ,Bacterial Typing Techniques ,Housekeeping gene ,030104 developmental biology ,Streptomyces himastatinicus - Abstract
A novel actinomycete, designated strain 1H-SSA8T, was isolated from the head of an ant (Camponotus japonicus Mayr) and was found to produce amphotericin. A polyphasic approach was employed to determine the status of strain 1H-SSA8T. Morphological and chemotaxonomic characteristics were consistent with those of members of the genus Streptomyces . The menaquinones detected were MK-9(H6), MK-9(H8) and MK-9(H4). The phospholipid profile consisted of diphosphatidylglycerol, phosphatidylmethylethanolamine, phosphatidylethanolamine and phosphatidylinositol mannoside. The major fatty acids were identified as iso-C16 : 0, C16 : 0, C15 : 0 and anteiso-C15 : 0. Analysis of the 16S rRNA gene sequence showed that strain 1H-SSA8T belongs to the genus Streptomyces with high sequence similarity to Streptomyces ramulosus NRRL B-2714T (99.2 %). Two tree-making algorithms based on 16S rRNA gene sequences showed that the isolate formed a phyletic line with Streptomyces himastatinicus ATCC 53653T (98.7 %). The MLSA utilizing partial sequences of the housekeeping genes (atpD, gyrB, recA, rpoB and trpB) also supported the position. However, evolutionary distances were higher than the 0.007 MLSA evolutionary distance threshold proposed for species-level relatedness. Moreover, the low level of DNA–DNA relatedness and phenotypic differences allowed the novel isolate to be differentiated from its most closely related strain S. ramulosus NRRL B-2714T and strain S. himastatinicus ATCC 53653T. It is concluded that the organism can be classified as representing a novel species of the genus Streptomyces , for which the name Streptomyces amphotericinicus sp. nov. is proposed. The type strain is 1H-SSA8T (=CGMCC 4.7350T=DSM 103128T).
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- 2017
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22. Streptomyces lasii sp. nov., a Novel Actinomycete with Antifungal Activity Isolated from the Head of an Ant (Lasius flavus)
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Wensheng Xiang, Shanwen Jiang, Chongxi Liu, Kai Yan, Xueli Zhao, Xiangjing Wang, Chuanyu Han, and Yuanyuan Tian
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DNA, Bacterial ,0301 basic medicine ,Antifungal Agents ,DNA, Ribosomal ,Applied Microbiology and Biotechnology ,Microbiology ,Streptomyces ,Actinobacteria ,Streptomyces scabrisporus ,03 medical and health sciences ,RNA, Ribosomal, 16S ,Animals ,Phylogeny ,Strain (chemistry) ,biology ,Phylogenetic tree ,Ants ,Lasius ,General Medicine ,Ribosomal RNA ,biology.organism_classification ,16S ribosomal RNA ,030104 developmental biology ,Head - Abstract
During a screening for novel and biotechnologically useful actinobacteria in insects, a novel actinobacteria with antifungal activity, designated strain 5H-CA11T, was isolated from the head of an ant (Lasius flavus) and characterized using a polyphasic approach. The organism was found to have morphological and chemotaxonomic characteristics typical of members of the genus Streptomyces. 16S rRNA gene sequence analysis showed that strain 5H-CA11T is a member of the genus Streptomyces, with the highest sequence similarity to Streptomyces scabrisporus DSM 41855T (98.9%). Similarities to other type strains of the genus Streptomyces were lower than 96%. Phylogenetic analysis based on the 16S rRNA gene sequence also indicated that strain 5H-CA11T clusters with S. scabrisporus DSM 41855T using two tree-making algorithms. DNA-DNA hybridization between strain 5H-CA11T and S. scabrisporus JCM 11712T revealed 33.6% similarity, supporting the phenotypic and phylogenetic differences found between these two strains. Therefore, the strain is concluded to represent a novel species of the genus Streptomyces, for which the name Streptomyces lasii sp. nov. is proposed. The type strain is 5H-CA11T (=CGMCC 4.7303T = DSM 102043T).
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- 2017
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23. Longispora urticae sp. nov., isolated from rhizosphere soil of Urtica urens L., and emended descriptions of the species Longispora albida and Longispora fulva
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Junwei Zhao, Chongxi Liu, Wensheng Xiang, Liying Jin, Yue Zhao, Xiangjing Wang, and Chenyu Piao
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DNA, Bacterial ,0301 basic medicine ,China ,Peptidoglycan ,Biology ,Diaminopimelic Acid ,DNA, Ribosomal ,Microbiology ,Actinobacteria ,03 medical and health sciences ,chemistry.chemical_compound ,Cell Wall ,Genus ,Phylogenetics ,RNA, Ribosomal, 16S ,Botany ,Urticaceae ,Phospholipids ,Phylogeny ,Soil Microbiology ,Ecology, Evolution, Behavior and Systematics ,Base Composition ,Rhizosphere ,Phylogenetic tree ,Fatty Acids ,Nucleic Acid Hybridization ,Micromonosporaceae ,Vitamin K 2 ,Sequence Analysis, DNA ,General Medicine ,Ribosomal RNA ,16S ribosomal RNA ,biology.organism_classification ,Bacterial Typing Techniques ,030104 developmental biology ,chemistry ,Diaminopimelic acid - Abstract
Two Gram-stain-positive, aerobic actinomycete strains, designated NEAU-PCY-3T and NEAU-PCY-4, were isolated from rhizosphere soil of Urtica urens L. collected from Anshan, Liaoning Province, northeast PR China. The 16S rRNA gene sequence analysis showed that the two strains exhibited 99.9 % 16S rRNA gene sequence similarity with each other and that they were most closely to Longispora fulva DSM 45356T (98.7, 98.9 %) and Longispora albida JCM 11711T (97.1, 97.2 %). Phylogenetic analysis based on the 16S rRNA gene sequences indicated that the two strains were located in the same lineage and formed a cluster with the genus Longispora. Both strains were observed to contain MK-10(H4) and MK-10(H6) as the predominant menaquinones. The cell wall peptidoglycan was found to contain meso-diaminopimelic acid, d-glutamic acid, glycine and l-alanine. Whole-cell hydrolysates mainly contained galactose, ribose and xylose. The phospholipid profile contained diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, several glycolipids and several unknown lipids. The major cellular fatty acids for strain NEAU-PCY-3T were iso-C16 : 0, iso-C17 : 0, anteiso-C17 : 0 and C18 : 1ω5c. The DNA-DNA hybridization value between strains NEAU-PCY-3T and NEAU-PCY-4 was 83.6±0.4 %, and the values between the two strains and their closest phylogenetic relatives, belonging to the genus Longispora, were well below 70 %, supporting that they represented a distinct genomic species. An array of phenotypic characteristics also differentiated the strains from their closely related species, the only two validly published Longispora species. On the basis of the genetic, chemotaxonomic and phenotypic properties, strains NEAU-PCY-3T and NEAU-PCY-4 were classified as representatives of a novel species of the genus Longispora, for which the name Longispora urticae sp. nov. is proposed. The type strain is NEAU-PCY-3T (=DSM 105119T=CCTCC AA 2017017T).
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- 2017
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24. Promicromonospora soli sp. nov., a novel actinomycete isolated from soil
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Chongxi Liu, Weiwei Zheng, Wensheng Xiang, Dongmei Li, Junwei Zhao, Yue Zhao, and Xiangjing Wang
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DNA, Bacterial ,0301 basic medicine ,China ,food.ingredient ,Biology ,medicine.disease_cause ,Microbiology ,03 medical and health sciences ,Promicromonospora umidemergens ,Monophyly ,food ,RNA, Ribosomal, 16S ,Actinomycetales ,Botany ,medicine ,Promicromonospora ,Phospholipids ,Phylogeny ,Soil Microbiology ,Ecology, Evolution, Behavior and Systematics ,Base Composition ,Phylogenetic tree ,Strain (biology) ,Fatty Acids ,Nucleic Acid Hybridization ,Vitamin K 2 ,Sequence Analysis, DNA ,General Medicine ,Ribosomal RNA ,16S ribosomal RNA ,Bacterial Typing Techniques ,030104 developmental biology ,Taxonomy (biology) - Abstract
A novel actinobacterium, designated strain NEAU-GS50T, was isolated from soil collected from Mount Song and characterized by using a polyphasic approach. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that the organism should be assigned to the genus Promicromonospora and that it forms a monophyletic clade with its closest relatives Promicromonospora umidemergens JCM 17975T (98.94 % 16S rRNA gene sequence similarity), Promicromonospora alba 1C-HV12T (98.82 %) and Promicromonospora kermanensis DSM45485T (98.68 %). Similarly, chemotaxonomic data including major menaquinones, fatty acid compositions and polar lipid profiles, also supported the placement of strain NEAU-GS50T in the genus Promicromonospora . However, DNA–DNA relatedness, physiological and biochemical data showed that strain NEAU-GS50T could be distinguished from its closest relatives. Therefore, strain NEAU-GS50T represents a novel species of the genus Promicromonospora , for which the name Promicromonospora soli sp. nov. is proposed, with strain NEAU-GS50T (CGMCC4.7398T=DSM 104515T) as the type strain.
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- 2017
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25. Prof
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Chongxi, Liu
- Abstract
The supporting informations for the article "Taxonomic Characterization and Secondary Metabolite Analysis of Streptomyces triticiradicis sp. nov., a Novel Actinomycete with Antifungal Activity"
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- 2019
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26. Actinomadura physcomitrii sp. nov., a novel actinomycete isolated from moss [Physcomitrium sphaericum (Ludw) Fuernr]
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Chongxi Liu, Zhiyan Wang, Chenghui Peng, Wensheng Xiang, Junwei Zhao, Yue Shen, and Xiaoxin Zhuang
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0106 biological sciences ,0301 basic medicine ,China ,Carbohydrates ,Diamino acid ,Bryophyta ,Diaminopimelic Acid ,010603 evolutionary biology ,01 natural sciences ,Microbiology ,Actinobacteria ,Funariaceae ,03 medical and health sciences ,chemistry.chemical_compound ,Genus ,Cell Wall ,RNA, Ribosomal, 16S ,Actinomycetales ,Actinomadura ,Molecular Biology ,Phospholipids ,Phylogeny ,Soil Microbiology ,biology ,Phylogenetic tree ,Strain (chemistry) ,Fatty Acids ,Vitamin K 2 ,General Medicine ,biology.organism_classification ,16S ribosomal RNA ,Bacterial Typing Techniques ,030104 developmental biology ,chemistry ,Genome, Bacterial - Abstract
A novel endophytic actinomycete, designated strain LD22T, was isolated from moss [Physcomitrium sphaericum (Ludw) Fuernr] collected from Yunnan Province, Southwest China. A polyphasic taxonomic study was carried out to establish the status of this strain. Morphological and chemotaxonomic characteristics of strain LD22T confirmed the affiliation of the isolate to the genus Actinomadura. The diamino acid present in the cell wall is meso-diaminopimelic acid. Glucose, madurose, galactose and ribose occur in whole cell hydrolysates. The menaquinones were identified as MK-9(H4), MK-9(H8), MK-9(H6) and MK-9(H2). The polar lipid profile was found to contain diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside and an unidentified phospholipid. The major fatty acids were found to be C16:0, 10-methyl C18:0 and C18:1 ω9c. The DNA G + C content of the draft genome sequence, consisting of 10.0 Mbp, was 72.5%. Phylogenetic analysis of 16S rRNA gene sequences showed that strain LD22T belongs to the genus Actinomadura with the highest sequence similarity to Actinomadura montaniterrae CYP1-1BT (99.2%). However, phylogenetic analysis based on 16S rRNA gene sequences showed that the isolate formed a phyletic line with Actinomadura rudentiformis HMC1T (98.6%). The low level of DNA–DNA relatedness and some different phenotypic characteristics allowed the strain to be distinguished from the above-mentioned two strains. Therefore, it is concluded that strain that strain LD22T represents a novel species of the genus of Actinomadura, for which the name Actinomadura physcomitrii sp. nov. is proposed. The type strain is LD22T (= CCTCC AA 2018050T = JCM 33455T).
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- 2019
27. The spectra of compounds 1-9
- Author
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Chongxi Liu
- Subjects
TheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITY - Abstract
Figure S1. 1H NMR and 13C NMR (600 MHz) spectra of compounds 1-8;Figure S2. 1H NMR,13C NMR,1H-1H COSY,HSQC,HMBC,Roesy,Optical rotation, CD,UV,IR andHRESIspectra of compound 9.
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- 2019
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28. Streptomyces gamaensis sp. nov., a novel actinomycete with antifungal activity isolated from soil in Gama, Chad
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Chongxi Liu, Lan Ye, Jiansong Li, Pengyu Sun, Wensheng Xiang, Shanshan Zhao, Xiangjing Wang, Adam Yacoub Abagana, and Weiwei Zheng
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0301 basic medicine ,Antifungal ,Antifungal Agents ,Chad ,medicine.drug_class ,030106 microbiology ,Microbial Sensitivity Tests ,Microbiology ,Streptomyces ,03 medical and health sciences ,RNA, Ribosomal, 16S ,Botany ,medicine ,Molecular Biology ,Soil Microbiology ,biology ,Strain (biology) ,Fungi ,General Medicine ,Ribosomal RNA ,biology.organism_classification ,16S ribosomal RNA ,030104 developmental biology ,Streptomyces hiroshimensis ,Taxonomy (biology) ,Gene sequence - Abstract
During an investigation exploring potential sources of novel species and natural products, a novel actinomycete with antifungal activity, designated strain NEAU-Gz11T, was isolated from a soil sample, which was collected from Gama, Chad. The isolate was found to have morphological and chemotaxonomic characteristics typical of members of the genus Streptomyces. 16S rRNA gene sequence similarity studies showed that strain NEAU-Gz11T belongs to the genus Streptomyces with high sequence similarity to Streptomyces hiroshimensis JCM 4098T (98.0 %). Similarities to other type strains of the genus Streptomyces were lower than 98.0 %. However, the physiological and biochemical characteristics and low levels of DNA–DNA relatedness could differentiate the isolate genotypically and phenotypically from S. hiroshimensis JCM 4098T. Therefore, the strain is concluded to represent a novel species of the genus Streptomyces, for which the name Streptomyces gamaensis sp. nov. is proposed. The type strain is NEAU-Gz11T (=CGMCC 4.7304T=DSM 101531T).
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- 2016
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29. Verrucosispora sonchi sp. nov., a novel endophytic actinobacterium isolated from the leaves of common sowthistle (Sonchus oleraceus L.)
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Ying Huang, Shanshan Zhao, Wensheng Xiang, Xiangjing Wang, Tingting Cao, Zhaoxu Ma, Chongxi Liu, Yuhang Gao, and Kai Yan
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DNA, Bacterial ,0301 basic medicine ,China ,food.ingredient ,Sequence analysis ,Biology ,Diaminopimelic Acid ,medicine.disease_cause ,Microbiology ,Sonchus ,03 medical and health sciences ,food ,RNA, Ribosomal, 16S ,Botany ,medicine ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Base Composition ,Verrucosispora ,Phylogenetic tree ,Strain (chemistry) ,Fatty Acids ,Verrucosispora lutea ,Nucleic Acid Hybridization ,Micromonosporaceae ,Vitamin K 2 ,Sequence Analysis, DNA ,General Medicine ,16S ribosomal RNA ,biology.organism_classification ,Bacterial Typing Techniques ,Plant Leaves ,Sonchus oleraceus ,030104 developmental biology ,Verrucosispora qiuiae - Abstract
A novel actinobacterium, designated strain NEAU-QY3T, was isolated from the leaves of Sonchus oleraceus L. and examined using a polyphasic taxonomic approach. The organism formed single spores with smooth surface on substrate mycelia. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that the strain had a close association with the genus Verrucosispora and shared the highest sequence similarity with Verrucosispora qiuiae RtIII47T (99.17 %), an association that was supported by a bootstrap value of 94 % in the neighbour-joining tree and also recovered with the maximum-likelihood algorithm. The strain also showed high 16S rRNA gene sequence similarities to Xiangella phaseoli NEAU-J5T (98.78 %), Jishengella endophytica 202201T (98.51 %), Micromonospora eburnea LK2-10T (98.28 %), Verrucosispora lutea YIM 013T (98.23 %) and Salinispora pacifica CNR-114T (98.23 %). Furthermore, phylogenetic analysis based on the gyrB gene sequences supported the conclusion that strain NEAU-QY3T should be assigned to the genus Verrucosispora . However, the DNA–DNA hybridization relatedness values between strain NEAU-QY3T and V. qiuiae RtIII47T and V. lutea YIM 013T were below 70 %. With reference to phenotypic characteristics, phylogenetic data and DNA–DNA hybridization results, strain NEAU-QY3T was readily distinguished from its most closely related strains and classified as a new species, for which the name Verrucosispora sonchi sp. nov. is proposed. The type strain is NEAU-QY3T (=CGMCC 4.7312T=DSM 101530T).
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- 2016
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30. A new spectinabilin derivative with cytotoxic activity from ant-derived Streptomyces sp. 1H-GS5
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Jiansong Li, Ji-Dong Wang, Junwei Zhao, Ji Zhang, Chongxi Liu, Shuanghe Liu, Wensheng Xiang, and Xiangjing Wang
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0301 basic medicine ,Streptomyces sp. 1H-GS5 ,Stereochemistry ,Pharmaceutical Science ,Antineoplastic Agents ,Substance P ,010402 general chemistry ,01 natural sciences ,Streptomyces ,Analytical Chemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Drug Discovery ,Animals ,Humans ,Cytotoxic T cell ,Fermentation broth ,Cytotoxicity ,Nuclear Magnetic Resonance, Biomolecular ,Pharmacology ,Spectinabilin ,Molecular Structure ,biology ,Ants ,Organic Chemistry ,food and beverages ,Hep G2 Cells ,General Medicine ,HCT116 Cells ,biology.organism_classification ,Peptide Fragments ,ANT ,0104 chemical sciences ,030104 developmental biology ,Complementary and alternative medicine ,chemistry ,Pyrones ,Molecular Medicine ,Drug Screening Assays, Antitumor ,Derivative (chemistry) - Abstract
A new spectinabilin derivative (1) was isolated from the fermentation broth of the ant-derived Streptomyces sp. 1H-GS5, and the structure was elucidated by extensive spectroscopic analysis. Compound 1 showed cytotoxicity against human tumor cell lines A549, HCT-116, and HepG2 with IC
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- 2016
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31. Nocardia lasii sp. nov., a novel actinomycete isolated from the cuticle of an ant (Lasius fuliginosus L)
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Chongxi Liu, Kai Yan, Lu Bai, Lan Ye, Wensheng Xiang, Junwei Zhao, and Xiangjing Wang
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DNA, Bacterial ,0301 basic medicine ,Arabinose ,Hypha ,030106 microbiology ,Microbiology ,Nocardia ,Cell wall ,03 medical and health sciences ,chemistry.chemical_compound ,RNA, Ribosomal, 16S ,medicine ,Animals ,Molecular Biology ,Phylogeny ,biology ,Strain (chemistry) ,Ants ,Nocardia ignorata ,Nocardiosis ,General Medicine ,Lasius fuliginosus ,bacterial infections and mycoses ,biology.organism_classification ,16S ribosomal RNA ,medicine.disease ,Molecular Typing ,030104 developmental biology ,chemistry - Abstract
A novel actinomycete, designated strain 3C-HV12T, was isolated from the cuticle of an ant (Lasius fuliginosus L) and characterised using a polyphasic approach. 16S rRNA gene sequence similarity studies showed that strain 3C-HV12T belongs to the genus Nocardia with high sequence similarities to Nocardia soli DSM 44488T (99.2 %) and Nocardia cummidelens R89T (99.2 %), and phylogenetically clustered with these two species and Nocardia ignorata DSM 44496T (98.8 %), Nocardia salmonicida JCM 4826T (98.8 %), Nocardia fluminea S1T (98.8 %), Nocardia coubleae OFN N12T (98 %) and Nocardia camponoti 1H-HV4T (97.4 %). The morphological and chemotaxonomic properties of the strain are also consistent with those of members of the genus Nocardia. The strain was observed to form extensively branched substrate hyphae which fragmented into rod-shaped and non-motile elements. The cell wall was found to contain meso-diaminopimelic acid and the whole cell sugars were identified as arabinose and galactose. The predominant menaquinone was identified as MK-8(H4, ω-cycl). The phospholipid profile was found to consist of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. The major fatty acids were identified as C18:0 10-methyl, C16:0 and C16:1ω7c. Mycolic acids were found to be present. A combination of DNA–DNA hybridisation experiments and phenotypic tests were carried out between strain 3C-HV12T and its phylogenetically closely related strains, which further clarified their relatedness and demonstrated that 3C-HV12T could be distinguished from these strains. Therefore, the strain is concluded to represent a novel species of the genus Nocardia, for which the name Nocardia lasii sp. nov. is proposed. The type strain is 3C-HV12T (=DSM 100525T = CGMCC 4.7279T).
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- 2016
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32. Lysinibacillus endophyticus sp. nov., an indole-3-acetic acid producing endophytic bacterium isolated from corn root (Zea mays cv. Xinken-5)
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Guanghua Wang, Wensheng Xiang, Chongxi Liu, Xuejiao Guan, Zhenhua Yu, Jiang Yu, and Xiaobing Liu
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0301 basic medicine ,030106 microbiology ,Biology ,Plant Roots ,Zea mays ,Microbiology ,Cell wall ,03 medical and health sciences ,chemistry.chemical_compound ,Japan ,Phylogenetics ,RNA, Ribosomal, 16S ,Botany ,Endophytes ,Bacillaceae ,Molecular Biology ,Phylogeny ,Indoleacetic Acids ,Strain (chemistry) ,General Medicine ,16S ribosomal RNA ,biology.organism_classification ,Molecular Typing ,RNA, Bacterial ,030104 developmental biology ,chemistry ,Peptidoglycan ,Indole-3-acetic acid ,Bacteria - Abstract
A Gram-positive, aerobic, motile, rod-shaped bacterium, designated strain C9(T), was isolated from surface sterilised corn roots (Zea mays cv. Xinken-5) and found to be able to produce indole-3-acetic acid. A polyphasic taxonomic study was carried out to determine the status of strain C9(T). The major cellular fatty acids were found to contain iso-C15:0, anteiso-C15:0 and anteiso-C17:0, and the only menaquinone was identified as MK-7. The polar lipid profile was found to contain diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, two unidentified phospholipids and an unidentified lipid. The cell wall peptidoglycan was found to be of the A4α L-Lys-D-Asp type and the whole cell sugar was found to be glucose. Phylogenetic analysis based on the 16S rRNA gene sequence showed that strain C9(T) belongs to the genus Lysinibacillus and is closely related to Lysinibacillus chungkukjangi NBRC 108948(T) (98.1 % similarity) and Lysinibacillus sinduriensis DSM 27595(T) (98.0 %). However, the low levels of DNA-DNA relatedness and some differential phenotypic characteristics allowed the strain to be distinguished from its close relatives. Therefore, it is concluded that strain C9(T) represents a novel species of the genus Lysinibacillus, for which the name Lysinibacillus endophyticus sp. nov. is proposed. The type strain is C9(T) (=DSM 100506(T) = CGMCC 1.15291(T)).
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- 2016
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33. Plantactinospora soyae sp. nov., an endophytic actinomycete isolated from soybean root [Glycine max (L.) Merr]
- Author
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Xuejiao Guan, Wenchao Li, Feiyu Jia, Xiangjing Wang, Wensheng Xiang, Jiansong Li, Jinmeng Li, Xiaowei Guo, Pinjiao Jin, and Chongxi Liu
- Subjects
DNA, Bacterial ,0106 biological sciences ,0301 basic medicine ,China ,Sequence analysis ,Biology ,Diaminopimelic Acid ,Plant Roots ,010603 evolutionary biology ,01 natural sciences ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Cell Wall ,Phylogenetics ,RNA, Ribosomal, 16S ,Botany ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Phylogenetic tree ,Strain (chemistry) ,Fatty Acids ,Nucleic Acid Hybridization ,Micromonosporaceae ,Vitamin K 2 ,Sequence Analysis, DNA ,General Medicine ,Ribosomal RNA ,16S ribosomal RNA ,Bacterial Typing Techniques ,030104 developmental biology ,chemistry ,Galactose ,Glycine ,Soybeans - Abstract
A novel actinomycete, designated strain NEAU-gxj3T, was isolated from soybean root [Glycine max (L.) Merr.] collected from Harbin, Heilongjiang Province, China, and characterized using a polyphasic approach. The 16S rRNA gene sequence of strain NEAU-gxj3T showed highest similarity to those of Micromonospora equina Y22T (98.2 %) and Plantactinospora endophytica YIM 68255T (98.0 %). Phylogenetic analysis based on the 16S rRNA gene and gyrB gene demonstrated that the isolate clustered with the members of the genus Plantactinospora. The chemotaxonomic properties of strain NEAU-gxj3Twere also consistent with those of members of the genus Plantactinospora. The cell wall contained meso-diaminopimelic acid and whole-cell sugars were xylose, glucose and galactose. The predominant menaquinones were MK-10(H6), MK-9(H8), MK-10(H2) and MK-10(H4). The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. The major fatty acids were identified as anteiso-C17 : 0, iso-C16 : 0, iso-C15 : 0 and C15 : 0. A combination of DNA-DNA hybridization result and some phenotypic characteristics indicated that strain NEAU-gxj3Tcould be differentiated clearly from its closest phylogenetic relatives. Therefore, the strain is concluded to represent a novel species of the genus Plantactinospora, for which the name Plantactinospora soyae sp. nov. is proposed. The type strain is NEAU-gxj3T (=CGMCC 4.7221T=DSM 46832T).
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- 2016
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34. Nonomuraea zeae sp. nov., isolated from the rhizosphere of corn (Zea mays L.)
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Wensheng Xiang, Siyu Guo, Chongxi Liu, Xiangjing Wang, Shuyu Zhou, Yue Shen, Jiansong Li, and Feiyu Jia
- Subjects
DNA, Bacterial ,0301 basic medicine ,China ,Sequence analysis ,Biology ,Diaminopimelic Acid ,Rhizophila ,Zea mays ,Microbiology ,03 medical and health sciences ,Cell Wall ,RNA, Ribosomal, 16S ,Actinomycetales ,Botany ,Phospholipids ,Phylogeny ,Soil Microbiology ,Ecology, Evolution, Behavior and Systematics ,Base Composition ,Rhizosphere ,Strain (chemistry) ,Fatty Acids ,Nucleic Acid Hybridization ,Vitamin K 2 ,Sequence Analysis, DNA ,General Medicine ,Ribosomal RNA ,biology.organism_classification ,16S ribosomal RNA ,Bacterial Typing Techniques ,030104 developmental biology ,Chemotaxonomy ,Soil microbiology - Abstract
A novel actinobacterium, designated strain NEAU-ND5T, was isolated from the rhizosphere of corn (Zea mays L.) collected in Heilongjiang Province, north-east China, and characterized using a polyphasic approach. 16S rRNA gene sequence analysis showed that strain NEAU-ND5T was a member of the genus Nonomuraea, with highest sequence similarities to Nonomuraea jabiensis A4036T (98.29 %), Nonomuraea rosea GW12687T (98.25 %), Nonomuraea candida HMC10T (98.22 %), Nonomuraea rhizophila YIM 67092T (98.04 %) and Nonomuraea kuesteri NRRL B-24325T (98.04 %). Similarities to other type strains of the genus Nonomuraea were lower than 98 %. Morphological and chemotaxonomic properties of strain NEAU-ND5T were also consistent with the description of the genus Nonomuraea. The cell wall contained meso-diaminopimelic acid and the whole-cell sugars were glucose, ribose and madurose. The phospholipid profile consisted of diphosphatidylglycerol, phosphatidylmonomethylethanolamine, phosphatidylethanolamine, hydroxy-phosphatidylmonomethylethanolamine, hydroxy-phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. The major menaquinones were MK-9(H4), MK-9(H2) and MK-9(H0). The predominant cellular fatty acids were iso-C16:0 and 10-methyl C17:0. A combination of DNA-DNA hybridization results and some phenotypic characteristics demonstrated that strain NEAU-ND5T was clearly distinguished from its closely related Nonomuraea species. Consequently, it is concluded that strain NEAU-ND5T represents a novel species of the genus Nonomuraea, for which the name Nonomuraea zeae sp. nov. is proposed. The type strain is NEAU-ND5T (=CGMCC 4.7280T=DSM 100528T).
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- 2016
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35. Streptosporangium jiaoheense sp. nov. and Streptosporangium taraxaci sp. nov., actinobacteria isolated from soil and dandelion root (Taraxacum mongolicum Hand.-Mazz.)
- Author
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Chongxi Liu, Zhilei Li, Jiansong Li, Lifeng Guo, Junwei Zhao, Wensheng Xiang, Yao Li, Xiangjing Wang, and Chenyu Piao
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DNA, Bacterial ,0301 basic medicine ,China ,Taraxacum ,Sequence analysis ,Dandelion ,Plant Roots ,Microbiology ,Actinobacteria ,03 medical and health sciences ,RNA, Ribosomal, 16S ,Botany ,Phylogeny ,Soil Microbiology ,Ecology, Evolution, Behavior and Systematics ,Base Composition ,biology ,Fatty Acids ,Nucleic Acid Hybridization ,Vitamin K 2 ,Sequence Analysis, DNA ,General Medicine ,Ribosomal RNA ,biology.organism_classification ,16S ribosomal RNA ,Bacterial Typing Techniques ,030104 developmental biology ,Chemotaxonomy ,Taxonomy (biology) ,Soil microbiology - Abstract
Two novel actinobacteria, designated strains NEAU-Jh1-4T and NEAU-Wp2-0T, were isolated from muddy soil collected from a riverbank in Jiaohe and a dandelion root collected from Harbin, respectively. A polyphasic study was carried out to establish the taxonomic positions of these two strains. The phylogenetic analysis based on the 16S rRNA gene sequences of strains NEAU-Jh1-4T and NEAU-Wp2-0T indicated that strain NEAU-Jh1-4T clustered with Streptosporangium nanhuense NEAU-NH11T (99.32 % 16S rRNA gene sequence similarity), Streptosporangium purpuratum CY-15110T (98.30 %) and Streptosporangium yunnanense CY-11007T (97.95 %) and strain NEAU-Wp2-0T clustered with ‘ Streptosporangium sonchi ’ NEAU-QS7 (99.39 %), ‘ Streptosporangium kronopolitis ’ NEAU-ML10 (99.26 %), ‘ Streptosporangium shengliense ’ NEAU-GH7 (98.85 %) and Streptosporangium longisporum DSM 43180T (98.69 %). Moreover, morphological and chemotaxonomic properties of the two isolates also confirmed their affiliation to the genus Streptosporangium . However, the low level of DNA–DNA hybridization and some phenotypic characteristics allowed the isolates to be differentiated from the most closely related species. Therefore, it is proposed that strains NEAU-Jh1-4T and NEAU-Wp2-0T represent two novel species of the genus Streptosporangium , for which the name Streptosporangium jiaoheense sp. nov. and Streptosporangium taraxaci sp. nov. are proposed. The type strains are NEAU-Jh1-4T (=CGMCC 4.7213T=JCM 30348T) and NEAU-Wp2-0T (=CGMCC 4.7217T=JCM 30349T), respectively.
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- 2016
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36. Streptomyces bryophytorum sp. nov., an endophytic actinomycete isolated from moss (Bryophyta)
- Author
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Chuang Li, Chongxi Liu, Zhaoxu Ma, Xiangjing Wang, Pinjiao Jin, Wensheng Xiang, Jiansong Li, and Junwei Zhao
- Subjects
0301 basic medicine ,China ,030106 microbiology ,Bryophyta ,Peptidoglycan ,Diaminopimelic Acid ,DNA, Ribosomal ,Microbiology ,Streptomyces ,03 medical and health sciences ,chemistry.chemical_compound ,Cell Wall ,RNA, Ribosomal, 16S ,Endophytes ,Molecular Biology ,Phospholipids ,Phylogeny ,Soil Microbiology ,biology ,Strain (chemistry) ,Streptomyces cocklensis ,Vitamin K 2 ,Sequence Analysis, DNA ,General Medicine ,biology.organism_classification ,16S ribosomal RNA ,Streptomyces paucisporeus ,Actinobacteria ,Streptomyces yeochonensis ,030104 developmental biology ,Streptomyces yanglinensis ,chemistry ,Diaminopimelic acid - Abstract
A novel endophytic actinomycete, designated strain NEAU-HZ10(T) was isolated from moss and characterised using a polyphasic approach. The strain was found to have morphological and chemotaxonomic characteristics typical of the genus Streptomyces. Strain NEAU-HZ10(T) formed grayish aerial mycelia, which differentiated into straight to flexuous chains of cylindrical spores. The cell wall peptidoglycan was found to contain LL-diaminopimelic acid. Predominant menaquinones were identified as MK-9(H6) and MK-9(H8). The polar lipid profile was found to consist of phosphatidylethanolamine, phosphatidylinositol and two unidentified phospholipids. The major fatty acids were identified as iso-C16:0, anteiso-C15:0 and C16:0. 16S rRNA gene sequence similarity studies showed that strain NEAU-HZ10(T) belongs to the genus Streptomyces and exhibits high sequence similarity to Streptomyces cocklensis DSM 42063(T) (98.9 %). Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain NEAU-HZ10(T) clustered with S. cocklensis DSM 42063(T), Streptomyces yeochonensis CGMCC 4.1882(T) (98.7 %), Streptomyces paucisporeus CGMCC 4.2025(T) (98.4 %) and Streptomyces yanglinensis CGMCC 4.2023(T) (98.1 %). However, a combination of DNA-DNA hybridisation results and some phenotypic characteristics indicated that strain NEAU-HZ10(T) can be distinguished from its phylogenetically closely related strains. Therefore, it is proposed that strain NEAU-HZ10(T) represents a novel species of the genus Streptomyces for which the name Streptomyces bryophytorum sp. nov. is proposed. The type strain is NEAU-HZ10(T) (= CGMCC 4.7151(T) = DSM 42138(T)).
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- 2016
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37. Recruitment of Defensive Microbs and Plant Protection
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Xiang-Jing Wang, Jia Song, Chongxi Liu, and Wensheng Xiang
- Subjects
Pharmacology (medical) ,Biology - Published
- 2016
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- View/download PDF
38. Dactylosporangium solaniradicis sp. nov., a novel actinobacterium isolated from a root of tomato (Solanum lycopersicum L.)
- Author
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Zhaoxu Ma, Jiansong Li, Shuyu Zhou, Liyang Chu, Jianlong Fan, Xiangjing Wang, Chongxi Liu, Wenchao Li, and Wensheng Xiang
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DNA, Bacterial ,0301 basic medicine ,China ,Hypha ,Rhamnose ,030106 microbiology ,Peptidoglycan ,Diaminopimelic Acid ,DNA, Ribosomal ,Plant Roots ,Microbiology ,Cell wall ,03 medical and health sciences ,chemistry.chemical_compound ,Solanum lycopersicum ,Cell Wall ,RNA, Ribosomal, 16S ,Molecular Biology ,Phospholipids ,Phylogeny ,Soil Microbiology ,Phylogenetic tree ,biology ,Strain (chemistry) ,Fatty Acids ,Nucleic Acid Hybridization ,Micromonosporaceae ,Sequence Analysis, DNA ,General Medicine ,16S ribosomal RNA ,biology.organism_classification ,Phenotype ,030104 developmental biology ,Biochemistry ,chemistry ,Solanum - Abstract
A novel actinobacterium, designated strain NEAU-FJL2(T), was isolated from a tomato root (Solanum lycopersicum L.) and characterised using a polyphasic approach. Morphological and chemotaxonomic properties of strain NEAU-FJL2(T) are consistent with the description of the genus Dactylosporangium. Finger-shaped sporangia were observed to form on short sporangiophores branching from the substrate hyphae. The cell wall peptidoglycan was found to contain meso- and 3-hydroxy-diaminopimelic acids; arabinose, mannose, rhamnose and xylose were found as whole-cell sugars. The phospholipid profile was found to consist of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol and phosphatidylinositol. The predominant menaquinones were identified as MK-9(H8) and MK-9(H6). The major fatty acids were identified as iso-C16:0, C16:1 ω7c and iso-C15:0. Phylogenetic analysis based on 16S rRNA gene sequences demonstrated that strain NEAU-FJL2(T) belongs to the genus Dactylosporangium, with Dactylosporangium sucinum JCM 19831(T) (99.3 % 16S rRNA gene sequence similarity), Dactylosporangium darangshiense JCM 17441(T) (99.2 %), Dactylosporangium fulvum JCM 5631(T) (98.9 %) and Dactylosporangium roseum JCM 3364(T) (98.8 %) as the nearest phylogenetic relatives. However, a combination of DNA-DNA hybridization results and some phenotypic characteristics demonstrated that strain NEAU-FJL2(T) can be distinguished from them. Consequently, it is proposed that strain NEAU-FJL2(T) represents a novel species of the genus Dactylosporangium, for which the name Dactylosporangium solaniradicis sp. nov. is proposed. The type strain is NEAU-FJL2(T) (=CGMCC 4.7302(T) = DSM 100814(T)).
- Published
- 2016
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39. Mumia xiangluensis sp. nov., isolated from the rhizosphere of Peucedanum praeruptorum Dunn
- Author
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Xiangjing Wang, Feiyu Jia, Wensheng Xiang, Shuyu Zhou, Jianlong Fan, Jiansong Li, Yang Bai, and Chongxi Liu
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DNA, Bacterial ,0301 basic medicine ,China ,030106 microbiology ,Peptidoglycan ,Diamino acid ,Biology ,Diaminopimelic Acid ,medicine.disease_cause ,DNA, Ribosomal ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Chlorides ,Cell Wall ,RNA, Ribosomal, 16S ,Botany ,medicine ,Molecular Biology ,Phospholipids ,Phylogeny ,Soil Microbiology ,Rhizosphere ,Fatty Acids ,Sequence Analysis, DNA ,General Medicine ,Propionibacteriaceae ,Ribosomal RNA ,16S ribosomal RNA ,Mumia xiangluensis ,Bacterial Typing Techniques ,Mumia flava ,Tracheophyta ,030104 developmental biology ,chemistry ,Chemotaxonomy ,Carbohydrate Metabolism ,Diaminopimelic acid - Abstract
During an investigation of microbial diversity in medicinal herbs, a novel actinobacterium, strain NEAU-KD1(T) was isolated from the rhizosphere of Peucedanum praeruptorum Dunn collected from Xianglu Mountain in Heilongjiang Province, northeast China and characterized using a polyphasic approach. The organism was found to have the typical chemotaxonomic and morphological characteristics of the genus Mumia. Cells were observed to be non-spore-forming and irregular cocci. The cell wall was found to contain LL-diaminopimelic acid as the cell wall diamino acid. The whole-cell sugars were detected as galactose and rhamnose and the predominant menaquinone was identified as MK-9(H4). The polar lipids were found to consist of diphosphatidylglycerol, phosphatidylglycerol, phosphoglycolipid and five unidentified phospholipids. The major cellular fatty acids were determined to be composed of C16:0, 10-methyl C18:0 and C18:1ω7c. The phylogenetic analysis based on 16S rRNA gene sequence also indicated that strain NEAU-KD1(T) belongs to the genus Mumia and with high sequence similarity to Mumia flava NBRC 109973(T) (97.6 % sequence similarity). The results of DNA-DNA hybridization and the phenotypic characteristics indicated that strain NEAU-KD1(T) could be distinguished from its close phylogenetic relative. Thus, strain NEAU-KD1(T) can be concluded to represent a novel species of the genus Mumia, for which the name Mumia xiangluensis sp. nov. is proposed. The type strain is NEAU-KD1(T) (=CGMCC 4.7305(T) = DSM 101040(T)).
- Published
- 2016
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40. Streptomyces polygonati sp. nov., an endophytic actinomycete isolated from a root of Polygonatum odoratum (Mill.)
- Author
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Lifeng Guo, Feiyu Jia, Chongxi Liu, Xuejiao Guan, Wensheng Xiang, Siyu Guo, Shuanghe Liu, and Xiangjing Wang
- Subjects
0301 basic medicine ,Strain (chemistry) ,Streptomyces polygonati ,General Medicine ,Diamino acid ,Ribosomal RNA ,Biology ,biology.organism_classification ,16S ribosomal RNA ,Microbiology ,Streptomyces misakiensis ,Polygonatum odoratum ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,Streptomyces yanglinensis ,Botany ,Ecology, Evolution, Behavior and Systematics - Abstract
A novel actinomycete, designated strain NEAU-G9T, was isolated from the root of Polygonatum odoratum (Mill.) collected from Harbin, Heilongjiang province, north China, and was characterized using a polyphasic approach. Key morphological and chemotaxonomic properties confirmed the affiliation of strain NEAU-G9T to the genus Streptomyces. Strain NEAU-G9T contained ll-diaminopimelic acid as the diamino acid. The predominant menaquinones were MK-9(H8), MK-9(H6) and MK-9(H4). The phospholipid profile contained diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. The predominant fatty acids were iso-C16 : 0, anteiso-C15 : 0 and C16 : 0.16S rRNA gene sequence similarity studies showed that strain NEAU-G9T belongs to the genus Streptomyces and exhibits the highest sequence similarity to Streptomyces yanglinensis JCM 13275T (97.75 %). However, phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain NEAU-G9T is most closely related to Streptomyces misakiensis JCM 4062T (97.12 % sequence similarity). A combination of DNA–DNA hybridization results and some phenotypic characteristics indicated that strain NEAU-G9T can be clearly distinguished from S. yanglinensis JCM 13275T and S. misakiensis JCM 4062T. Consequently, strain NEAU-G9T represents a novel species of the genus Streptomyces, for which the name Streptomyces polygonati sp. nov. is proposed. The type strain is NEAU-G9T ( = CGMCC 4.7237T = DSM 100521T).
- Published
- 2016
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41. Promicromonospora alba sp. nov., an actinomycete isolated from the cuticle of Camponotus japonicas Mayr
- Author
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Lifeng Guo, Jiansong Li, Wensheng Xiang, Chuang Li, Chongxi Liu, Xiangjing Wang, Jianlong Fan, Siyu Guo, and Junwei Zhao
- Subjects
0301 basic medicine ,food.ingredient ,Promicromonospora vindobonensis ,Promicromonospora iranensis ,Strain (chemistry) ,Rhamnose ,General Medicine ,Biology ,medicine.disease_cause ,16S ribosomal RNA ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Promicromonospora umidemergens ,030104 developmental biology ,food ,Biochemistry ,chemistry ,medicine ,Peptidoglycan ,Promicromonospora ,Ecology, Evolution, Behavior and Systematics - Abstract
A novel actinomycete, designated strain 1C-HV12T, was isolated from the cuticle of Camponotus japonicas Mayr and characterized using a polyphasic approach. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that the organism should be assigned to the genus Promicromonospora and that it forms a monophyletic clade with the closest relatives Promicromonospora umidemergens JCM 17975T(99.17 % 16S rRNA gene sequence similarity), Promicromonospora vindobonensis V45T (98.88 %) and Promicromonospora iranensis HM 792T (98.85 %). Moreover, morphological and chemotaxonomic properties of strain 1C-HV12T also confirmed the affiliation of the isolate to the genus Promicromonospora. The peptidoglycan hydrolysates contained alanine, glutamic acid and lysine, and whole-cell sugars were galactose, glucose, rhamnose and ribose. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside, an unidentified phosphoglycolipid, an unidentified phospholipid and an unidentified glycolipid. The major menaquinones were MK-9(H4) and MK-9(H2). The predominant cellular fatty acids were anteiso-C15 : 0, iso-C15 : 0 and anteiso-C17 : 0. The DNA G+C content was 71.6 mol%. However, the low level of DNA–DNA relatedness and some phenotypic characteristics allowed the isolate to be differentiated from closely related species. Therefore, it is concluded that strain 1C-HV12T represents a novel species of the genus Promicromonospora, for which the name Promicromonospora alba sp. nov. is proposed. The type strain is 1C-HV12T ( = CGMCC 4.7283T = DSM 100490T).
- Published
- 2016
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42. Streptomyces daqingensis sp. nov., isolated from saline–alkaline soil
- Author
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Yuejing Zhang, Chuang Li, Ji Zhang, Chongxi Liu, Jiansong Li, Wensheng Xiang, Hairong He, Junwei Zhao, Tong Pan, and Xiangjing Wang
- Subjects
0301 basic medicine ,biology ,Strain (chemistry) ,General Medicine ,Ribosomal RNA ,biology.organism_classification ,Microbiology ,Streptomyces marinus ,Actinobacteria ,Streptomyces daqingensis ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Streptomyces haliclonae ,chemistry ,Biochemistry ,Chemotaxonomy ,Diaminopimelic acid ,Ecology, Evolution, Behavior and Systematics - Abstract
A novel strain of actinobacteria, designated strain NEAU-ZJC8T, was isolated from a saline–alkaline soil collected from Heilongjiang Province, north-east China and characterized using a polyphasic approach. Strain NEAU-ZJC8T exhibited morphological, cultural and chemotaxonomic features consistent with its classification as representing a member of the genus Streptomyces. Growth occurred at 16–35 °C, pH 5.0–11.0 and in the presence of 0–11 % (w/v) NaCl. The cell-wall peptidoglycan contained ll-diaminopimelic acid and glycine. Whole-cell hydrolysates mainly contained glucose, galactose and ribose. Predominant menaquinones were MK-9(H6), MK-9(H4) and MK-9(H8). The polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositol mannoside and two unidentified phospholipids. The major cellular fatty acids (>10 %) were iso-C16 : 0, iso-C15 : 0, anteiso-C17 : 0 and C16 : 0. The G+C content of the DNA was 72.7 mol%. A phylogenetic tree based on 16S rRNA sequences showed that strain NEAU-ZJC8T formed a distinct clade within the genus Streptomyces and was closely related to Streptomyces haliclonae DSM 41970T (98.56 % similarity) and Streptomyces marinus NBRC 105047T (97.96 % similarity). A combination of DNA–DNA hybridization results and some phenotypic characteristics demonstrated that strain NEAU-ZJC8T could be distinguished from its closest phylogenetic relatives. Therefore, strain NEAU-ZJC8T represents a novel species of the genus Streptomyces, for which the name Streptomyces daqingensis sp. nov. is proposed. The type strain is NEAU-ZJC8T ( = CGMCC 4.7178T = JCM 30057T).
- Published
- 2016
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43. Characterization of Streptomyces piniterrae sp. nov. and Identification of the Putative Gene Cluster Encoding the Biosynthesis of Heliquinomycins
- Author
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Sheng-Xiong Huang, Chongxi Liu, Chenghui Peng, Yongjiang Wang, Congting Gao, Xiaoxin Zhuang, Zhiyan Wang, and Can Su
- Subjects
Streptomycespiniterrae sp. nov ,Microbiology (medical) ,heliquinomycins ,Sequence analysis ,Microbiology ,Streptomyces ,Article ,03 medical and health sciences ,Pinus yunnanensis ,Virology ,Putative gene ,Gene cluster ,Streptomyces chattanoogensis ,lcsh:QH301-705.5 ,genome analysis ,030304 developmental biology ,Genetics ,0303 health sciences ,biosynthetic gene cluster ,biology ,Strain (chemistry) ,030306 microbiology ,biology.organism_classification ,16S ribosomal RNA ,rpoB ,lcsh:Biology (General) - Abstract
A novel actinomycete producing heliquinomycin and 9&rsquo, methoxy-heliquinomycin, designated strain jys28T, was isolated from rhizosphere soil of Pinus yunnanensis and characterized using a polyphasic approach. The strain had morphological characteristics and chemotaxonomic properties identical to those of members of the genus Streptomyces. It formed spiral chains of spores with spiny surfaces. The menaquinones detected were MK-9(H6), MK-9(H8) and MK-9(H4). The major fatty acids were iso-C16:0, C15:0, C16:1&omega, 7с and anteiso-C15:0. The phospholipids were diphosphatidylglycerol, phosphatidylmethylethanolamine, phosphatidylethanolamine and phosphatidylinositol mannoside. The DNA G + C content of the draft genome sequence, consisting of 8.5 Mbp, was 70.6%. Analysis of the 16S rRNA gene sequence showed that strain jys28T belongs to the genus Streptomyces with the highest sequence similarities to Streptomyces chattanoogensis NBRC 13058T (99.2%) and Streptomyces lydicus DSM 40002T (99.2%) and phylogenetically clustered with them. Multilocus sequence analysis based on five other house-keeping genes (atpD, gyrB, rpoB, recA and trpB) and the low level of DNA&ndash, DNA relatedness and phenotypic differences allowed the novel isolate to be differentiated from its most closely related strains. Therefore, the strain is concluded to represent a novel species of the genus Streptomyces, for which the name Streptomyces piniterrae sp. nov. is proposed. Furthermore, the putative biosynthetic gene cluster of heliquinomycins was identified and the biosynthetic pathway was discussed. The type strain is jys28T (=CCTCC AA 2018051T =DSM 109823T).
- Published
- 2020
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44. Characterization of the N-methyltransferases involved in the biosynthesis of toxoflavin, fervenulin and reumycin from Streptomyces hiroshimensis ATCC53615
- Author
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Can Su, Zhouxin Zhang, Yijun Yan, Wensheng Xiang, Jianying Luo, Chongxi Liu, Xiaowei Guo, and Sheng-Xiong Huang
- Subjects
0301 basic medicine ,Methyltransferase ,Mutant ,Pyrimidinones ,01 natural sciences ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Structure-Activity Relationship ,Biosynthesis ,Burkholderia glumae ,Physical and Theoretical Chemistry ,Gene ,Toxoflavin ,030102 biochemistry & molecular biology ,biology ,Dose-Response Relationship, Drug ,Molecular Structure ,010405 organic chemistry ,Triazines ,Organic Chemistry ,Methylation ,Methyltransferases ,biology.organism_classification ,Streptomyces ,0104 chemical sciences ,chemistry ,Biocatalysis ,Streptomyces hiroshimensis - Abstract
Toxoflavin (1), fervenulin (2), and reumycin (3), known to be produced by plant pathogen Burkholderia glumae BGR1, are structurally related 7-azapteridine antibiotics. Previous biosynthetic studies revealed that N-methyltransferase ToxA from B. glumae BGR1 catalyzed the sequential methylation at N6 and N1 in pyrimido[5,4-e]-as-triazine-5,7(6H,8H)-dione (4) to generate 1. However, the N8 methylation of 4 in the biosynthesis of fervenulin remains unclear. To explore the N-methyltransferases required for the biosynthesis of 1 and 2, we identified and characterized the fervenulin and toxoflavin biosynthetic gene clusters in S. hiroshimensis ATCC53615. On the basis of the structures of intermediates accumulated from the four N-methyltransferase gene inactivation mutants and systematic enzymatic methylation reactions, the tailoring steps for the methylation order in the biosynthesis of 1 and 2 were proposed. The N-methylation order and routes for the biosynthesis of fervenulin and toxoflavin in S. hiroshimensis are more complex and represent an obvious departure from those in B. glumae BGR1.
- Published
- 2018
45. Sphaerisporangium aureirubrum sp. nov., an actinomycete isolated from soil
- Author
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Chuanyu Han, Wensheng Xiang, Lifeng Guo, Xiangjing Wang, Lu Bai, Chongxi Liu, Jiansong Li, Pengyu Sun, Junwei Zhao, and Xiaowei Guo
- Subjects
DNA, Bacterial ,China ,Sequence analysis ,Mannose ,Biology ,Diaminopimelic Acid ,Microbiology ,chemistry.chemical_compound ,Cell Wall ,Phylogenetics ,RNA, Ribosomal, 16S ,Actinomycetales ,Phospholipids ,Phylogeny ,Soil Microbiology ,Ecology, Evolution, Behavior and Systematics ,Base Composition ,Strain (chemistry) ,Fatty Acids ,Nucleic Acid Hybridization ,Vitamin K 2 ,Sequence Analysis, DNA ,General Medicine ,Ribosomal RNA ,16S ribosomal RNA ,Bacterial Typing Techniques ,chemistry ,Soil microbiology ,Sphaerisporangium rubeum - Abstract
A novel actinomycete, designated strain NEAU-GQTH1-3T, was isolated from muddy soil collected from a stream in Qitaihe, Heilongjiang Province, north-east China and characterized using a polyphasic approach. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that the organism should be assigned to the genus Sphaerisporangium and forms a stable clade with its closest relative Sphaerisporangium rubeum JCM 13067T (98.2 % 16S rRNA gene sequence similarity). Moreover, morphological and chemotaxonomic properties of strain NEAU-GQTH1-3T also confirmed the affiliation of the isolate to the genus Sphaerisporangium. The cell wall contained meso-diaminopimelic acid and the whole-cell sugars were glucose, galactose, madurose, mannose and ribose. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylmethylethanolamine, phosphatidylinositol, two phosphatidylinositol mannosides, phosphoglycolipid, an unidentified phospholipid and an unidentified glycolipid. The major menaquinones were MK-9(H4), MK-9(H6) and MK-9(H2). The predominant cellular fatty acids were iso-C16 : 0 and 10-methyl C17 : 0. Mycolic acids were absent. The DNA G+C content was 70.4 mol%. However, the low level of DNA–DNA relatedness and some phenotypic characteristics allowed the isolate to be differentiated from its closest relative. Therefore, it is concluded that strain NEAU-GQTH1-3T represents a novel species of the genus Sphaerisporangium, for which the name Sphaerisporangium aureirubrum sp. nov. is proposed. The type strain is NEAU-GQTH1-3T ( = CGMCC 4.7199T = JCM 30346T).
- Published
- 2015
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46. Micromonospora lycii sp. nov., a novel endophytic actinomycete isolated from wolfberry root (Lycium chinense Mill)
- Author
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Shilin Xu, Xuejiao Guan, Junwei Zhao, Chongxi Liu, Jiansong Li, Lifeng Guo, Wensheng Xiang, Yuejing Zhang, and Xiangjing Wang
- Subjects
DNA, Bacterial ,0301 basic medicine ,Sequence analysis ,Glycine ,Peptidoglycan ,Diaminopimelic Acid ,Micromonospora ,Plant Roots ,Microbiology ,03 medical and health sciences ,Lycium chinense ,chemistry.chemical_compound ,Cell Wall ,RNA, Ribosomal, 16S ,Drug Discovery ,Botany ,Phospholipids ,Phylogeny ,Mycelium ,Pharmacology ,biology ,Fatty Acids ,Vitamin K 2 ,Sequence Analysis, DNA ,Lycium ,Ribosomal RNA ,16S ribosomal RNA ,biology.organism_classification ,Bacterial Typing Techniques ,030104 developmental biology ,chemistry ,Genes, Bacterial ,Diaminopimelic acid - Abstract
A novel actinomycete, designated strain NEAU-gq11(T), was isolated from wolfberry root (Lycium chinense Mill) and characterized using a polyphasic approach. Strain NEAU-gq11(T) was observed to form rough-surfaced spores that borne singly on the substrate hyphae but aerial mycelia were not developed. The organism showed closest 16S rRNA gene sequence similarity to Micromonospora saelicesensis Lupac 09(T) (99.4%), and phylogenetically clustered with M. chokoriensis 2-19/6(T) (99.3%), 'M. zeae' NEAU-gq9(T) (99.3%), M. violae NEAU-zh8(T) (99.1%), 'M. jinlongensis' NEAU-GRX11(T) (99.1%), M. zamorensis CR38(T) (99.0%), M. taraxaci NEAU-P5(T) (98.9%) and M. lupini Lupac 14N(T) (98.6%). Phylogenetic analysis based on the gyrB gene sequences also indicated that the isolate clustered with the above type strains except M. violae NEAU-zh8(T). The cell-wall peptidoglycan consisted of meso-diaminopimelic acid and glycine. The major menaquinones were MK-9(H8), MK-10(H6) and MK-10(H2). The phospholipid profile contained diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol. The major fatty acid was iso-C16:0. Furthermore, some physiological and biochemical properties and low DNA-DNA relatedness values enabled the strain to be differentiated from members of closely related species. Therefore, it is proposed that strain NEAU-gq11(T) represents a novel species of the genus Micromonospora, for which the name Micromonospora lycii sp. nov. is proposed. The type strain is NEAU-gq11(T) (=CGMCC 4.7149(T)=DSM 46703(T)).
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- 2015
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47. Catellatospora vulcania sp. nov. and Catellatospora paridis sp. nov., two novel actinobacteria isolated from volcanic sediment and the rhizosphere of Paris polyphylla
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Meiyue Gao, Chongxi Liu, Jiansong Li, Shuyu Zhou, Xuejiao Guan, Xiangjing Wang, Feiyu Jia, Wensheng Xiang, Yue Shen, and Siyu Guo
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DNA, Bacterial ,0301 basic medicine ,China ,Geologic Sediments ,Biology ,DNA, Ribosomal ,Microbiology ,Actinobacteria ,03 medical and health sciences ,Species Specificity ,Catellatospora paridis ,RNA, Ribosomal, 16S ,Cluster Analysis ,Molecular Biology ,Catellatospora vulcania ,Phylogeny ,Soil Microbiology ,Rhizosphere ,Base Sequence ,Phylogenetic tree ,Strain (chemistry) ,Paris polyphylla ,Nucleic Acid Hybridization ,Micromonosporaceae ,Sequence Analysis, DNA ,General Medicine ,biology.organism_classification ,16S ribosomal RNA ,Tracheophyta ,030104 developmental biology ,Microscopy, Electron, Scanning - Abstract
Two novel actinobacteria, designated strains NEAU-JM1(T) and NEAU-CL2(T), were isolated from volcanic sediment and the rhizosphere soil of Paris polyphylla, respectively, collected from Jiling and Heilongjiang Province, China. A polyphasic study was carried out to establish the taxonomic positions of these strains. The 16S rRNA gene sequence analysis showed that the two novel isolates exhibit 99.5 % 16S rRNA gene sequence similarity with each other. The phylogenetic analysis based on 16S rRNA gene sequence of strain NEAU-JM1(T) showed it to be closely related to Catellatospora methionotrophica JCM 7543(T) (99.4 % sequence similarity), Catellatospora coxensis DSM 44901(T) (99.4 %), Catellatospora citrea DSM 44097(T) (99.3 %) and Catellatospora chokoriensis JCM 12950(T) (99.2 %), and that of strain NEAU-CL2(T) to C. citrea DSM 44097(T) (99.4 %), C. methionotrophica JCM 7543(T) (99.3 %), C. chokoriensis JCM 12950(T) (99.3 %) and C. coxensis DSM 44901(T) (99.2 %). However, the DNA-DNA hybridization value between strains NEAU-JM1(T) and NEAU-CL2(T) was 62.2 %, and the values between the two strains and their close phylogenetic relatives were also below 70 %. With reference to phenotypic characteristics, phylogenetic data and DNA-DNA hybridization results, the two strains can be distinguished from each other and their close phylogenetic relatives. Thus, strains NEAU-JM1(T) and NEAU-CL2(T) can be concluded to represent two novel species of the genus Catellatospora, for which the names Catellatospora vulcania sp. nov. and Catellatospora paridis sp. nov. are proposed. The type strains are NEAU-JM1(T) (=CGMCC 4.7174(T) = JCM 30054(T)) and NEAU-CL2(T) (=CGMCC 4.7236(T) = DSM 100519(T)), respectively.
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- 2015
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48. Micromonospora vulcania sp. nov., isolated from volcanic sediment
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Meiyue Gao, Siyu Guo, Xuejiao Guan, Jiansong Li, Chongxi Liu, Wensheng Xiang, Xiangjing Wang, Shuyu Zhou, Feiyu Jia, and Yue Shen
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DNA, Bacterial ,China ,Geologic Sediments ,Molecular Sequence Data ,Volcanic Eruptions ,DNA, Ribosomal ,Micromonospora ,Microbiology ,Actinobacteria ,Phylogenetics ,RNA, Ribosomal, 16S ,Botany ,Cluster Analysis ,Molecular Biology ,Phylogeny ,biology ,Strain (chemistry) ,Phylogenetic tree ,Nucleic Acid Hybridization ,Micromonospora vulcania ,Subclade ,Sequence Analysis, DNA ,General Medicine ,Ribosomal RNA ,biology.organism_classification ,Bacterial Typing Techniques ,DNA Gyrase - Abstract
A novel actinobacterial strain, designated strain NEAU-JM2(T), was isolated from volcanic sediment collected from Longwan, Jilin province, north China and characterized using a polyphasic approach. The strain was found to have morphological and chemotaxonomic characteristics typical of the members of the genus Micromonospora. Phylogenetic analysis of the16S rRNA gene sequence also indicated that strain NEAU-JM2(T) should be classified in the genus Micromonospora and showed that close relatives are Micromonospora maoerensis NEAU-MES19(T) (99.5 %) and Micromonospora matsumotoense JCM 9104(T) (98.8 %). However, phylogenetic analysis based on the gyrB gene sequence showed that the isolate forms a separate subclade away from the close relatives in the neighbour-joining tree and also recovered with the maximum-likelihood algorithm. The low level of DNA-DNA relatedness allowed the isolate to be differentiated from M. maoerensis NEAU-MES19(T) and M. matsumotoense JCM 9104(T). Furthermore, strain NEAU-JM2(T) could also be distinguished from its close phylogenetic relatives by cultural and physiological characteristics. Therefore, it is proposed that strain NEAU-JM2(T) represents a novel species of the genus Micromonospora, for which the name Micromonospora vulcania sp. nov. is proposed. The type strain is NEAU-JM2(T) (=CGMCC 4.7144(T) = DSM 46711(T)).
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- 2015
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49. New cytotoxic spectinabilin derivative from ant-associated Streptomyces sp. 1H-GS5
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Chongxi Liu, Ji-Dong Wang, Hui Zhang, Ji Zhang, Mei-dong Xu, Shuanghe Liu, Wensheng Xiang, Huan Qi, and Xiangjing Wang
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Models, Molecular ,Streptomyces sp. 1H-GS5 ,Magnetic Resonance Spectroscopy ,Stereochemistry ,Antiparasitic ,medicine.drug_class ,Cytostatic agents ,010402 general chemistry ,01 natural sciences ,Streptomyces ,chemistry.chemical_compound ,Biosynthesis ,Drug Discovery ,medicine ,Animals ,Cytotoxic T cell ,Pharmacology ,Spectinabilin ,Molecular Structure ,biology ,Ants ,010405 organic chemistry ,Cytostatic Agents ,biology.organism_classification ,ANT ,0104 chemical sciences ,chemistry ,Pyrones - Published
- 2015
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50. Actinomadura jiaoheensis sp. nov. and Actinomadura sporangiiformans sp. nov., two novel actinomycetes isolated from muddy soil and emended description of the genus Actinomadura
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Chongxi Liu, Wensheng Xiang, Xiangjing Wang, Lu Bai, Yunxi Li, Junwei Zhao, Chuanyu Han, Lifeng Guo, and Pengyu Sun
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DNA, Bacterial ,China ,Molecular Sequence Data ,DNA, Ribosomal ,Microbiology ,Actinobacteria ,Phylogenetics ,RNA, Ribosomal, 16S ,Botany ,Cluster Analysis ,Molecular Biology ,Genus Actinomadura ,Phylogeny ,Soil Microbiology ,Actinomadura jiaoheensis ,Phylogenetic tree ,biology ,Nucleic Acid Hybridization ,Sequence Analysis, DNA ,General Medicine ,16S ribosomal RNA ,biology.organism_classification ,Actinomadura sporangiiformans ,Bacterial Typing Techniques ,Microscopy, Electron, Scanning ,Soil microbiology - Abstract
Two novel actinomycetes, designated strains NEAU-Jh1-3(T) and NEAU-Jh2-5(T), were isolated from muddy soil collected from a riverbank in Jiaohe, Jilin Province, north China. A polyphasic study was carried out to establish the taxonomic positions of these strains. The 16S rRNA gene sequence analysis showed that the two novel isolates exhibited 99.9 % 16S rRNA gene sequence similarity with each other and that they are closely related to Actinomadura viridis IFO 15238(T) (99.6, 99.6 %) and Actinomadura vinacea IFO 14688(T) (99.3, 99.3 %). Phylogenetic analysis based on the 16S rRNA gene sequences indicated that the two cultures clustered together and formed a cluster with A. viridis IFO 15238(T), A. vinacea IFO 14688(T) and Actinomadura rugatobispora IFO 14382(T). However, the DNA-DNA hybridization value between strains NEAU-Jh1-3(T) and NEAU-Jh2-5(T) was 63.6 %, and the values between the two strains and their close phylogenetic relatives were also below 70 %. With reference to phenotypic characteristics, phylogenetic data and DNA-DNA hybridization results, the two strains can be distinguished from each other and their close phylogenetic relatives. Thus, strains NEAU-Jh1-3(T) and NEAU-Jh2-5(T) represent two novel species of the genus Actinomadura, for which the names Actinomadura jiaoheensis sp. nov. and Actinomadura sporangiiformans sp. nov. are proposed. The type strains are NEAU-Jh1-3(T) (=CGMCC 4.7197(T) = JCM 30341(T)) and NEAU-Jh2-5(T) (=CGMCC 4.7211(T) = JCM 30342(T)), respectively.
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- 2015
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