1. Exploring bacteria diversity in commercialized table olive biofilms by metataxonomic and compositional data analysis
- Author
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Antonio Garrido-Fernández, Eduardo Medina-Pradas, Antonio Benítez-Cabello, Francisco Noé Arroyo-López, Verónica Romero-Gil, and Consejo Superior de Investigaciones Científicas (España)
- Subjects
DNA, Bacterial ,0301 basic medicine ,Weissella ,Mathematics and computing ,030106 microbiology ,lcsh:Medicine ,Microbiology ,Article ,03 medical and health sciences ,Olea ,RNA, Ribosomal, 16S ,Lactobacillus ,Leuconostoc ,Food science ,lcsh:Science ,Multidisciplinary ,Bacteria ,biology ,Microbiota ,lcsh:R ,Pseudomonas ,Food Packaging ,Health care ,biology.organism_classification ,Archaea ,Enterobacteriaceae ,Vibrio ,DNA, Archaeal ,030104 developmental biology ,Biofilms ,Fruit ,Food Microbiology ,lcsh:Q ,Pediococcus ,Fermented Foods - Abstract
13 Páginas.-- 2 Tablas.-- 5 Figuras, In this work, a total of 72 samples of non-thermally treated commercial table olives were obtained from different markets of the world. Then, prokaryotic diversity in olive biofilms was investigated by metataxonomic analysis. A total of 660 different OTUs were obtained, belonging to Archaea (2.12%) and Bacteria domains (97.88%). From these, 41 OTUs with a proportion of sequences ≥ 0.01% were studied by compositional data analysis. Only two genera were found in all samples, Lactobacillus, which was the predominant bacteria in the biofilm consortium (median 54.99%), and Pediococcus (26.09%). Celerinatantimonas, Leuconostoc, Alkalibacterium, Pseudomonas, Marinilactibacillus, Weissella, and the family Enterobacteriaceae were also present in at least 80% of samples. Regarding foodborne pathogens, only Enterobacteriaceae, Vibrio, and Staphylococcus were detected in at least 91.66%, 75.00%, and 54.10% of samples, respectively, but their median values were always below 0.15%. Compositional data analysis allowed discriminating between lye treated and natural olive samples, as well as between olives packaged in glass, PET and plastic bags. Leuconostoc, Celerinatantimonas, and Alkalibacterium were the bacteria genera with a higher discriminant power among samples. These results expand our knowledge of the bacteria diversity in olive biofilms, providing information about the sanitary and hygienic status of this ready-to-eat fermented vegetable., The research has received funding from the Spanish Government (Project TOBE RTI2018-100883-B-I00: www.tobeproject.csic.es).
- Published
- 2020