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Phosphate mineralization as a skeletal material is uncommon in invertebrate animals and rare in Mollusca. Remarkably, apatite minerals were first reported more than 30 years ago in the periostracum of two species of the mytilid bivalve Lithophaga where shells are mostly constructed of calcium carbonate. This discovery extended the range of biominerals secreted by molluscs but has attracted no subsequent research. In this study we review the occurrence of phosphate mineralization in Lithophaga and putatively allied taxa. Lithophagine bivalves, particularly Lithophaga and the more diverse Leiosolenus species, are well known for their endolithic chemical dissolution of calcareous rocks and corals with calcium-binding lipoproteins secreted by mantle glands. Fluorapatite was identified by X-ray diffraction in an outer layer of the periostracum in six species of Lithophaga. Morphological study by scanning electron microscopy of four species showed the fluorapatite crystals embedded in periostracal material in a layer 10–20 µm thick. Dilute bleach treatment revealed the crystals as densely packed euhedral prisms 250–400 nm in size. The succeeding inner layers of the periostracum were unmineralized. Observations of the developing periostracum of Lithophaga teres suggest that the initial mineralization is in the form of amorphous granules that coalesce and transform into euhedral crystals. Periostracal phosphate was not recorded in other members of the Lithophaginae – Leiosolenus, Botula or Zelithophaga species. Leiosolenus species characteristically have extraperiostracal aragonitic encrustations that can be thick and structurally complex. Published molecular phylogenies of Mytilidae bivalves show a division into two major clades with Lithophaga species in one clade and Leiosolenus species in the other, indicating that the subfamily Lithophaginae as presently understood is polyphyletic. This result implies that the two genera have independent evolutionary pathways to endolithic occupation of calcareous substrates although using similar mantle gland secretions to excavate their crypts. Because fluorapatite is considerably less soluble and harder than calcium carbonate, it is suggested that the phosphate layer of Lithophaga is a functional adaptation to protect their shells from self-dissolution from their rock-dissolving glandular secretions and may also act as defence against other shell-eroding organisms.

Atypical hemolytic uremic syndrome (aHUS) is a rare cause of end-stage kidney disease and associated with poor outcomes after kidney transplantation from early disease recurrence. Prophylactic eculizumab treatment at the time of transplantation is used in selected patients with aHUS. We report a retrospective case note review describing transplant outcomes in patients with aHUS transplanted between 1978 and 2017, including those patients treated with eculizumab.The National Renal Complement Therapeutics Centre database identified 118 kidney transplants in 86 recipients who had a confirmed diagnosis of aHUS. Thirty-eight kidney transplants were performed in 38 recipients who received prophylactic eculizumab. The cohort not treated with eculizumab comprised 80 transplants in 60 recipients and was refined to produce a comparable cohort of 33 transplants in 32 medium and high-risk recipients implanted since 2002. Complement pathway genetic screening was performed. Graft survival was censored for graft function at last follow-up or patient death. Graft survival without eculizumab treatment is described by complement defect status and by Kidney Disease: Improving Global Outcomes risk stratification.Prophylactic eculizumab treatment improved renal allograft survival (P = 0.006) in medium and high-risk recipients with 1-y survival of 97% versus 64% in untreated patients. Our data supports the risk stratification advised by Kidney Disease: Improving Global Outcomes.Prophylactic eculizumab treatment dramatically improves graft survival making transplantation a viable therapeutic option in aHUS.

New molecular phylogenies of the chemosymbiotic bivalve family Lucinidae, using 18S rRNA, 28S rRNA and cytochrome b genes, include species from genera not previously analysed. Notable additions from Myrteinae are sequences from Rostrilucina, Solelucina and Taylorina species, species of Ustalucina, Gonimyrtea from Leucosphaerinae and additional species of Ctena, Codakia, Lucinoma and Divalucina from Codakiinae. New sequences of Lucininae include the type species of Parvilucina (P. tenuisculpta), Liralucina, Falsolucinoma, Easmithia, Jallenia, Radiolucina and Cardiolucina as well as samples of Loripes orbiculatus from multiple localities. Five major clades, defined as subfamilies, are recognized: Pegophyseminae, Myrteinae, Leucosphaerinae, Codakiinae and Lucininae. Two branches, Fimbriinae and Monitilorinae, are represented by single species. Pegophyseminae are an extremely long-branched group with a sister-group relationship to Leucosphaerinae, while Codakiinae are a sister clade to the Lucininae. In various gene trees, the position of Myrteinae is unstable in relation to Pegophyseminae + Leucosphaerinae, Monitilorinae and Fimbriinae. The Myrteinae are not well resolved, with an ambiguous correlation of molecular and morphological characters. Codakiinae now include Divalucina cumingi, shown to be related to Lucinoma rather than Divaricella and Divalinga of the Lucininae. Leucosphaerinae are a well-supported clade but morphologically disparate, with the positions of Gonimyrtea and Callucina unresolved. Several molecularly distinct subclades are recognized within the Lucininae, especially the Lucinisca, Loripes and Parvilucina groups. Parvilucina species are paraphyletic with P. tenuisculpta, the type species, distinct from the western Atlantic species. Codakia, Ctena and Pegophysema have pan-tropical distributions with former connections disrupted by vicariant events of the closure of the eastern Tethyan and Central American Seaways. Species of Radiolucina, Pleurolucina and Lucinisca are present on either side of the Isthmus of Panama. A new classification of the 96 living lucinid genera is presented, providing a framework for future studies of systematics, ecology, biogeography and bacterial symbioses.

Urinary tract infection belongs to the most common bacterial infections in childhood: 3–5 % of girls and 1–2 % of boys suffer from it until puberty. In infancy, boys are preferably involved and later girls with a reinfection rate of two thirds. Five percent of infants with fever (≥38 °C) have a urinary tract infection.

Fibrosis is a universal finding in chronic allograft dysfunction, and it is characterized by an accumulation of extracellular matrix. The precise source of the myofibroblasts responsible for matrix deposition is not understood, and pharmacological strategies for prevention or treatment of fibrosis remain limited. One source of myofibroblasts in fibrosis is an endothelial-to-mesenchymal transition (EndMT), a process first described in heart development and involving endothelial cells undergoing a phenotypic change to become more like mesenchymal cells. Recently, lineage tracing of endothelial cells in mouse models allowed studies of EndMT in vivo and reported 27% to 35% of myofibroblasts involved in cardiac fibrosis and 16% of isolated fibroblasts in bleomycin-induced pulmonary fibrosis to be of endothelial origin. Over the past decade, mature microRNAs (miRNAs) have increasingly been described as key regulators of biological processes through repression or degradation of targeted mRNA. The stability and abundance of miRNAs in body fluids make them attractive as potential biomarkers, and progress is being made in developing miRNA targeted therapeutics. In this review, we will discuss the evidence of miRNA regulation of EndMT from in vitro and in vivo studies and the potential relevance of this to heart, lung, and kidney allograft dysfunction.

In fibrotic diseases, myofibroblasts derive from a range of cell types including endothelial-to-mesenchymal transition (EndMT). Increasing evidence suggests that miRNAs are key regulators in biological processes but their profile is relatively understudied in EndMT. In human umbilical vein endothelial cells (HUVEC), EndMT was induced by treatment with TGFβ2 and IL1β. A significant decrease in endothelial markers such as VE-cadherin, CD31 and an increase in mesenchymal markers such as fibronectin were observed. In parallel, miRNA profiling showed that miR-126-3p was down-regulated in HUVECs undergoing EndMT and over-expression of miR-126-3p prevented EndMT, maintaining CD31 and repressing fibronectin expression. EndMT was investigated using lineage tracing with transgenic Cdh5-Cre-ERT2, Rosa26R-stop-YFP mice in two established models of fibrosis: cardiac ischaemic injury and kidney ureteric occlusion. In both cardiac and kidney fibrosis, lineage tracing showed a significant subpopulation of endothelial-derived cells expressed mesenchymal markers, indicating they had undergone EndMT. In addition, miR-126-3p was restricted to endothelial cells and down-regulated in murine fibrotic kidney and heart tissue. These findings were confirmed in patient kidney biopsies. MiR-126-3p expression is restricted to endothelial cells and is down-regulated during EndMT. Over-expression of miR-126-3p reduces EndMT, therefore, it could be considered for miRNA-based therapeutics in fibrotic organs.

Background Post-transplant lymphoproliferative disease is a recognized complication following solid organ transplantation. This is usually a B cell disease and frequently associated with Epstein Barr virus infection, although T cell PTLD can occur. T cell PTLD is usually a monomorphic, lymphomatous disease associated with an adverse prognosis. Case report We report a 52 year old male pre-emptive renal transplant recipient who developed severe diarrhea with weight loss following intensification of his immunosuppression due to antibody mediated rejection 3 years after transplantation. Duodenal biopsy demonstrated monoclonal CD8+ T cell duodenitis leading to increased intraepithlieal lymphocytes and sub-total villous atrophy mimicking coeliac disease. Coeliac disease was excluded by negative anti-tissue transglutaminase antibody, HLA-DQ2 and HLA-DQ8 testing. There was no evidence of lymphoma either on biopsy or CT enterography and no FDG avid disease on PET. Symptoms did not improve with reduction of immunosuppression, but resolved fully on complete withdrawal of treatment. The transplant failed and he was established on dialysis. The diagnosis was early PTLD. Conclusions Oesophagogastroduodenoscopy with small bowel biopsies is a useful investigation for determining the cause of diarrhoea in renal transplant patients when more common causes have been excluded. This is the first report that we are aware of clonal T cell PTLD mimicking coeliac disease which only resolved after complete withdrawal of immunosuppression. As treatments for lymphoma are aggressive they are only initiated in the malignant phase and management of early stage PTLD is to minimise risk of progression by reducing immunosuppression. Any plans to retransplant will have to take into consideration the possibility that PTLD will recur.

Although species of the chemosymbiotic bivalve family Lucinidae are often diverse and abundant in shallow water habitats such as seagrass beds, new discoveries show that the family is equally speciose at slope and bathyal depths, particularly in the tropics, with records down to 2500 m. New molecular analyses including species from habitats down to 2000 m indicate that these cluster in four of seven recognized subfamilies: Leucosphaerinae, Myrteinae, Codakiinae, and Lucininae, with none of these comprising exclusively deep-water species. Amongst the Leucosphaerinae, Alucinoma, Epidulcina, Dulcina, and Myrtina live mainly at depths greater than 200 m. Most Myrteinae inhabit water depths below 100 m, including Myrtea, Notomyrtea, Gloverina, and Elliptiolucina species. In the Codakinae, only the Lucinoma clade live in deep water; Codakia and Ctena clades are largely restricted to shallow water. Lucininae are the most speciose of the subfamilies but only four species analyzed, Troendleina sp., ‘Epicodakia’ falkandica, Bathyaustriella thionipta, and Cardiolucina quadrata, occur at depths greater than 200 m. Our results indicate that slope and bathyal lucinids have several and independent originations from different clades with a notable increased diversity in Leucosphaerinae and Myrteinae. Some of the deep-water lucinids (e.g. Elliptiolucina, Dulcina, and Gloverina) have morphologies not seen in shallow water species, strongly suggesting speciation and radiation in these environments. By contrast, C. quadrata clusters with a group of shallow water congenors. Although not well investigated, offshore lucinids are usually found at sites of organic enrichment, including sunken vegetation, oxygen minimum zones, hydrocarbon seeps, and sedimented hydrothermal vents. The association of lucinids with hydrocarbon seeps is better understood and has been traced in the fossil record to the late Jurassic with successions of genera recognized; Lucinoma species are particularly prominent from the Oligocene to present day. © 2013 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 111, 401–420.

Four new species and a new genus of lucinid bivalves are described from shallow and deeper waters in the Indian and West Pacific Oceans. The new genus Scabrilucina (subfamily Lucininae) includes the little-known S. victorialis (Melvill, 1899) from the Arabian Sea and S. vitrea (Deshayes, 1844) from the Andaman Sea as well as a new species S. melvilli from the Torres Strait off northeastern Australia. Ferrocina brunei new species (Lucininae) was recovered from 60 m near oil drilling activities off Borneo; its anatomy confirmed the presence of symbiotic bacteria. Two unusual deeper water species of Leucosphaerinae are described, both species included in on-going molecular analyses; Gonimyrtea ferruginea from 400–650 m in the southwest Pacific and Myrtina reflexa from 200–825 m off Zanzibar and Madagascar.

A new molecular phylogeny of the Lucinidae using 18S and 28S rRNA and cytochrome b genes includes many species from the tropical Western Atlantic as well as additional taxa from the Indo-West Pacific. This study provides a phylogenetic framework for a new taxonomy of tropical Western Atlantic lucinids. The analysis confirmed five major clades—Pegophyseminae, Leucosphaerinae, Myrteinae, Codakiinae and Lucininae, with Monitilorinae and Fimbriinae represented by single species. The Leucosphaerinae are expanded and include Callucina winckworthi and the W. Atlantic Myrtina pristiphora that groups with several Indo-West Pacific Myrtina species. Within the Codakiinae two abundant species of Ctena from the Western Atlantic with similar shells are discriminated as C. orbiculata and C. imbricatula, while in the Indo-West Pacific Ctena bella is a probable species complex. The Lucininae is the most species rich and disparate subfamily with several subclades apparent. Three species of Lucina are recognized in the W. Atlantic L. aurantia, L. pensylvanica and L. roquesana. Pleurolucina groups near to Cavilinga and Lucina, while Lucinisca muricata is more closely related to the E. Pacific L. fenestrata than to the Atlantic L. nassula. A new species of Parvilucina is identified from molecular analyses having been confounded with Parvilucina pectinata but differs in ligament structure. Also, the former Parvilucina clenchi is more distant and assigned to Guyanella.

The systematics of the molluscan class Bivalvia are explored using a 5-gene Sanger-based approach including the largest taxon sampling to date, encompassing 219 ingroup species spanning 93 (or 82%) of the 113 currently accepted bivalve families. This study was designed to populate the bivalve Tree of Life at the family level and to place many genera into a clear phylogenetic context, but also pointing to several major clades where taxonomic work is sorely needed. Despite not recovering monophyly of Bivalvia or Protobranchia—as in most previous Sanger-based approaches to bivalve phylogeny—our study provides increased resolution in many higher-level clades, and supports the monophyly of Autobranchia, Pteriomorphia, Heteroconchia, Palaeoheterodonta, Heterodonta, Archiheterodonta, Euheterodonta, Anomalodesmata, Imparidentia, and Neoheterodontei, in addition to many other lower clades. However, deep nodes within some of these clades, especially Pteriomorphia and Imparidentia, could not be resolved with confidence. In addition, many families are not supported, and several are supported as non-monophyletic, including Malletiidae, Nuculanidae, Yoldiidae, Malleidae, Pteriidae, Arcidae, Propeamussiidae, Iridinidae, Carditidae, Myochamidae, Lyonsiidae, Pandoridae, Montacutidae, Galeommatidae, Tellinidae, Semelidae, Psammobiidae, Donacidae, Mactridae, and Cyrenidae; Veneridae is paraphyletic with respect to Chamidae, although this result appears to be an artifact. The denser sampling however allowed testing specific placement of species, showing, for example, that the unusual Australian Plebidonax deltoides is not a member of Donacidae and instead nests within Psammobiidae, suggesting that major revision of Tellinoidea may be required. We also showed that Cleidothaerus is sister group to the cementing member of Myochamidae, suggesting that Cleidothaeridae may not be a valid family and that cementation in Cleidothaerus and Myochama may have had a single origin. These results highlight the need for an integrative approach including as many genera as possible, and that the monophyly and relationships of many families require detailed reassessment. NGS approaches may be able to resolve the most recalcitrant nodes in the near future.

A new molecular phylogeny of the chemosymbiotic bivalve family Lucinidae is presented. Using sequences from the nuclear 18S and 28S rRNA genes and the mitochondrial gene cytochrome b, 105 specimens were analysed representing 87 separate species classified into 47 genera. Samples were collected from a wide range of habitats including mangroves, seagrass beds, shallow sands, offshore muds, and hydrocarbon seeps at depths ranging from the intertidal to over 2000 m. A chronogram, derived from the combined molecular tree, was calibrated using ten lucinid fossils. The trees show five well-supported clades and two single branches of Fimbria fimbriata (Linnaeus, 1758) and Monitilora ramsayi (Smith, 1885). A new classification of Lucinidae is proposed with seven subfamilial divisions: three new subfamilies ‐ Pegophyseminae, Leucosphaerinae, and Monitilorinae ‐ are introduced and Codakiinae, usually treated as a synonym of Lucininae, is revived to include the Lucinoma, Codakia, and Ctena subclades. Membership of the Lucininae and Myrteinae is considerably revised compared with Chavan’s commonly employed ‘Treatise’ classification. Previously considered as a separate family, Fimbriinae is now regarded as a subfamily within Lucinidae. The status of Milthinae is presently equivocal pending further analysis and Divaricellinae is recognized as polyphyletic, and is therefore abandoned, with species and genera now grouped in various places within the Lucininae. Deeper water Lucinidae mainly belong to Leucosphaerinae, Codakiinae (Lucinoma clade), and Myrteinae, with Lucinoma species being most frequently associated with hydrocarbon seeps. Species occurring in seagrass habitats derive largely from Pegophyseminae, Codakiinae, and Lucininae, and species from mangrove habitats derive from the Pegophyseminae and Lucininae.

Rare species of three long-lived lucinid genera, Gibbolucina Cossmann, 1904, Barbierella Chavan, 1938 and Retrolucina n. gen., with origins in the Paleocene and Eocene of western Tethys, are present in the Mozambique Channel area of the southwestern Indian Ocean but absent elsewhere in the Indo-West Pacific. A new species, Gibbolucina zelee n. sp., is described from the Banc de la Zélée and western Madagascar that resembles Miocene species from western France. Since their origin in the Paleocene to the present day Barbierella species have always been rare. New records and images, including syntypes, are provided for Barbierella louisensis (Viader, 1951) from Mauritius and the Mozambique Channel, with Barbierella scitula Oliver & Abou-Zeid, 1986 from the Red Sea regarded as synonym. A new genus, Retrolucina n. gen., is proposed with the living Lucina voorhoevei Deshayes, 1857 (usually called Eomiltha voorhoevei) as type species and also including Lucina defrancei Deshayes, 1857, a strikingly similar species from the Eocene of the Paris Basin. Retrolucina n. gen. differs from Eomiltha Cossmann, 1912 in shape, sculpture and hinge characters. Monitilora Iredale, 1930, another genus of Paleocene or earlier origins, includes a few living species in the Indo-West Pacific and is now identified from Mozambique with Monitilora sepes (Barnard, 1964) (formerly Phacoides sepes Barnard, 1964). It is suggested that Gibbolucina, Barbierella and Retrolucina n. gen. species became isolated in the western Indian Ocean following the closure of the Tethyan Seaway in the early Miocene while their congeners in western Tethys became extinct. The survival of these rare genera, with restricted geographical ranges and seemingly small populations, runs counter to current ideas concerning long-term extinction risk., Des espèces rares appartenant à trois genres anciens de lucines, Gibbolucina Cossmann, 1904, Barbierella Chavan, 1938 et Retrolucina n. gen., dont l'origine se situe au Paléocène et à l'Éocène en Téthys occidentale, sont présentes dans la zone du Canal du Mozambique dans le sud-ouest de l'océan Indien, et absentes ailleurs dans l'Indo-Ouest Pacifique. Une nouvelle espèce, Gibbolucina zelee n. sp., est décrite du Banc de la Zélée et de l'ouest de Madagascar; elle ressemble à une espèce du Miocène de l'ouest de la France. Depuis leur origine au Paléocène jusqu'à nos jours, les espèces de Barbierella ont toujours été rares. Des signalisations nouvelles et des illustrations, dont celles de syntypes, sont données pour Barbierella louisensis (Viader, 1951) de l'île Maurice et du Canal du Mozambique, et Barbierella scitula Oliver & Abou-Zeid, 1986 de la Mer Rouge est donnée comme synonyme. Le nouveau genre Retrolucina n. gen. est établi avec pour espèce type l'espèce actuelle Lucina voorhoevei Deshayes, 1857 (habituellement appelée Eomiltha voorhoevei), et comprenant également Lucina defrancei Deshayes, 1857, une espèce de l'Éocène du Bassin Parisien qui lui est étonnamment semblable. Retrolucina n. gen. diffère d'Eomiltha Cossmann, 1912 par sa forme, sa sculpture et les caractères de sa charnière. Monitilora sepes (Barnard, 1964), du Mozambique (auparavant Phacoides sepes Barnard, 1964), est classée dans le genre Monitilora Iredale, 1930, un autre genre dont l'origine remonte au moins au Paléocène et qui comprend un petit nombre d'espèces actuelles de l'Indo-Ouest Pacifique. Les espèces de Gibbolucina, Barbierella et Retrolucina n. gen. ont pu se retrouver isolées dans l'Ouest de l'océan Indien à la suite de la fermeture de la Téthys au début du Miocène alors que leurs congénères de la Téthys occidentale se sont éteintes. La survie de ces genres rares, avec des aires de distribution restreintes et apparemment de petites populations, va à l'encontre des idées classiques sur les risques d'extinction à long terme.

A scanning electron microscope study of the periostracum of 50 species of venerid bivalves revealed that periostracal calcification in the form of aragonitic needles and shorter pins is widespread within the family. Together with organic and sediment coatings that are found in some species, these needles form an integral part of the functional shell. Visible as a white ‘crust’ on the outside of shells, long slender needles (up to 400 mm long and 1 mm wide) without adherent material are seen in species of Tivela and Lioconcha and in Gomphina undulosa. Other venerids including Pitar species, Mysia undata and Compsomyax subdiaphana have short pins, capped with a fibrous organic matrix and significant coatings of sediment. Callocardia hungerfordi and Clementia papyracea have very thick sediment coatings underlain by short pins, while Gafrarium and Circe species have short pins with a thin, robust, organic coating and little particulate material. Finally, there are species, including Venus verrucosa, Chione elevata and Mercenaria mercenaria, where minute, ,1 mm long pins also underpin a thin organic coating. Details of formation were studied in Tivela lamyi and Lioconcha ornata, where the needles are elongate hexagonal crystals of aragonite enveloped by an organic sheath, which grow at their proximal ends from within the periostracum, connected to the outer mantle epithelium via narrow channels. Growth of needles ceases following the onset of shell calcification. The distribution of the periostracal structures was examined in relation to a published molecular phylogeny that recognized two major clades within the family. Larger needles and pins are confined to the clade that includes subfamilies Pitarinae, Gouldinae, Meretricinae and Petricolinae, while submicron-sized pins are found only in the Venerinae and Chioninae of the second clade. Calcified periostracal structures appear to be absent in Tapetinae and Dosiniinae.

The structure of the ctenidia of the Indo-West Pacific chemosymbiotic lucinid bivalve Anodontia (Euanodontia) ovum was investigated by electron microscopy. Ctenidial filaments are similar in general morphology to those described from other Lucinidae, with a ciliated zone, a short intermediary zone and a thick abfrontal zone composed largely of bacteriocytes separated by narrow intercalary cells. The bacteriocyte zones of adjacent filaments are fused in the distal part to form short cylindrical channels. The apices of intercalary cells project as cytoplasmic protrusions in the form of spiky tufts, with sheets and tendrils spreading over adjacent bacteriocytes. Compared with other lucinids A. ovum lacks abfrontal granule cells, mucocytes are infrequent and the bacteriocyte channels are short. Three morphotypes of symbiotic bacteria were detected, associated with the bacteriocyte zone of the ctenidial filaments: (1) all bacteriocytes contained abundant bacteria 3-5 mu m long and 0.5-1.0 mu m wide, enclosed in single vacuoles; (2) some bacteriocytes possessed spherical vesicles enclosing masses of smaller rod-shaped bacteria c. 1.0 mu m long; (3) probable spirochaete bacteria, 8-10 mu m long and 0.3 mu m wide, were abundant within the apical cytoplasmic protrusions of the intercalary cells. Preliminary molecular analysis using 16S rRNA gene sequences has so far identified only one bacterial symbiont, from the gamma division of Proteobacteria grouping in a cluster of symbiotic thiotrophs. This symbiont of A. ovum is closely similar to a symbiont previously reported from the western Atlantic lucinid Anodontia schrammi (originally cited as A. philippiana).

The giant bivalve Lucina megameris Dall, 1901, from the late Eocene White Limestone Group of Jamaica and by far the largest known species of the family Lucinidae, is placed in a new genus Superlucina. Apart from its large size, with a shell height exceeding 310 mm, it is distinguished from other genera, such as Pseudomiltha and Eomiltha by external shell characters and the extremely long and narrow, anterior adductor muscle scar. Features preserved on internal moulds suggest that, in common with living Lucinidae, S. megameris was chemosymbiotic with sulphide - oxidizing bacteria housed in the gills. Palaeoenvironmental evidence suggests a habitat in oligotrophic, shallow waters, probably in seagrass beds, with an associated molluscan fauna includ- ing large cardiids that may have been photosymbiotic. Super- lucina is considerably larger than any living lucinid that range in size from 3 to 150 mm with most encompassed within 5-30 mm. From the Jurassic onwards, a few other large lucinids are known from cold seep sites, with several other records from possible shallow water seagrass beds.

A new molecular phylogeny is presented for the highly diverse, bivalve molluscan subclass Heterodonta. The study, the most comprehensive for heterodonts to date, used new sequences of 18S and 28S rRNA genes for 103 species from 49 family groups with species of Palaeoheterodonta (Trigoniidae, Margaritiferidae and Unionidae) as outgroups. Results confirm previous analyses that the Carditidae/Astartidae/Crassatellidae clade is basal to all other heterodonts including Anomalodesmata (often classified as a separate subclass or order). Thyasiroidea occupy a near basal position between the Crassatelloidea and Anomalodesmata. Lucinidae form a well-supported monophyletic group distinct from Thyasiridae and Ungulinidae. The Solenoidea and Hiatelloidea link as sister groups distant from the Tellinoidea and Myoidea, respectively, where they had been previously associated. The position of the Gastrochaenidae is unstable but does not group with myoidean taxa. Species of four families of Galeommatoidea form a clade that also includes Sportellidae of the Cyamioidea. The Cardioidea and Tellinoidea form highly supported, long branched, individual clades but group as sister taxa. A major clade including Veneroidea, Mactroidea, Myoidea and other families is given the unranked name Neoheterodontei. There is no support for a separate order Myoida (Myoidea and Pholadoidea). Dreissenidae group within the clade including Myidae, Corbulidae, Pholadidae and Teredinidae. The Corbiculoidea is confirmed as polyphyletic with the Sphaeriidae and Corbiculidae forming separate clades within the Neoheterodontei; Corbiculidae grouping with the Glauconomidae. Hemidonacidae are unrelated to the Cardiidae, as previously proposed, but nest within the Neoheterodontei. The Gaimardiidae group near to the Ungulinidae and not with Cyamioidea where most recently classified. The family Ungulinidae, previously classified in the Lucinoidea, forms a well-supported clade within the Neoheterodontei and is elevated to superfamily rank — Ungulinoidea. The monophyletic status of Glossoidea, Arcticoidea and Veneroidea is unconfirmed. A brief review of the fossil record of the heterodonts indicates that the basal clades of Crassatelloidea, Anomalodesmata and Lucinoidea diverged very early in the Lower Palaeozoic. Other groups such as the Hiatelloidea, Solenoidea, Gastrochaenidae probably were of late Palaeozoic origins. The Cardioidea and Tellinoidea originated in the Triassic while major groups of Neoheterodontei radiated in the Late Mesozoic. The phylogenetic position of the Thyasiroidea and Galeommatoidea suggests a longer fossil history than has so far been recognized.

Molecular analyses of 13 species of the marine bivalve family Thyasiridae, using sequences from 18S rRNA and 28S rRNA genes, showed that the family is monophyletic despite the anatomical disparity and inclusion of both chemosymbiotic and asymbiotic species. This new analysis also confirmed that the three families (Thyasiridae, Lucinidae and Ungulinidae), previously included in the Lucinoidea, were not closely related. Four species of Ungulinidae grouped within a clade containing Veneridae, Arcticidae and Mactridae. In relation to a range of other heterodont bivalves, Thyasiridae occupied a near basal position, apart from a clade comprising Carditidae/Astartidae/Crassatellidae. The earliest thyasirid recognized in the fossil record is a species from the Lower Cretaceous of England. Within the Thyasiridae, some groups can be identified but relations between these are weakly supported. Amongst the taxa analysed, those with symbiotic bacteria and two ctenidial demibranchs belong to at least three groups, while there is some support for a clade of asymbiotic taxa with single demibranchs. In recognition of the monophyletic status of the Thyasiridae, distinct from all other heterodont bivalves, we elevate the rank to superfamily Thyasiroidea.

Recent molecular analyses have demonstrated that the traditional Lucinoidea, comprising the extant families Lucinidae, Thyasiridae, Ungulinidae, Fimbriidae, and Cyrenoididae, is not monophyletic. Thyasiridae and Ungulinidae are unrelated to Lucinidae, a result corroborated by clear morphological differences between the groups. Chemosymbiosis in Thyasiridae and Lucinidae has been independently derived. Within the family Lucinidae, previous ideas of relationship and subfamilial divisions based on shell characters have little support from molecular results. Anatomical characters of the ctenidia, mantle gills, and posterior apertures have potential in phylogenetic analysis but rigorous analysis of shell characters is also needed. Although there is a good fossil record of Lucinidae throughout the Cenozoic and Mesozoic, in the Palaeozoic fossils are less frequent and most need reappraisal. The Silurian Ilionia prisca is probably the earliest fossil with convincing lucinid features, followed in the Devonian by Phenacocyclas and some Paracyclas species. © 2006 The Linnean Society of London, Zoological Journal of the Linnean Society, 2006, 148, 421–438.

The bivalve superfamily Lucinoidea is usually considered to comprise six separate families: Lucinidae, Thyasiridae, Ungulinidae, Fimbriidae, Mactromyidae and Cyrenoididae. Chemoautotrophic chemosymbiosis with sulphide-oxidizing bacteria is present in all studied species of Lucinidae, Fimbriidae and many, but not all, Thyasiridae. However, it is absent from Ungulinidae. The Mactromyidae are likely to be an entirely fossil group with doubtful affinities with Lucinoidea. The Cyrenoididae are poorly investigated, but anatomical features suggest they are unrelated to lucinoids. To investigate phylogenetic relationships within the Lucinoidea and test hypotheses concerning the evolution of the chemosymbiosis, a molecular study was made using sequences of 18S and 28S rRNA genes. The study incorporated species of Ungulinidae (two genera, two species), Thyasiridae (three species), Fimbriidae (one species) and many Lucinidae (31 species, 19 genera) as well as a range of outgroups representing major groups of heterodont and palaeoheterodont bivalves. The results demonstrate that the monophyly of the Lucinoidea is not supported. The Ungulinidae and Thyasiridae are unrelated to the Lucinidae. Ungulina and Diplodonta of the Ungulinidae group with a clade comprising Veneroidea, Arcticoidea and Mactroidea. The three Thyasira species analysed form a monophyletic branch in a basal position among the heterodont bivalves. The only member of the Fimbriidae examined, Fimbria fimbriata, groups within the Lucinidae and separation as a family is not supported. The Lucinidae form a monophyletic group within which several distinct and well-supported clades and lineages are recognized: the Myrtea clade, the ‘Anodontia’ clade, Fimbria lineage, Phacoides pectinatus lineage, and two clades comprising all other lucinids. The implication of non-monophyly of the superfamily Lucinoidea is that Thyasiridae represent an independent acquisition of bacterial chemosymbiosis and this is reflected in major morphological differences from the Lucinidae.

This taxonomic revision concerns the Australian and Indo-Pacific species of small lucinid bivalves possessing a deeply inset internal ligament. Nine species of Pillucina are recognised of which four occur around Australia including the two new species, P. pacifica and P. australis. Two other new species are described; P. denticula from South Africa and P. mauritiana from Mauritius. Pillucina vietnamica is common along the Queensland coast and P. symbolica the only species previously recorded from Australia is considered conspecific with the wide ranging species P. pisidium. A new genus, Chavania, includes two species; C. striata is widely distributed in the Indo-West Pacific including eastern and western Australia, while C. erythraea is restricted to the Arabian Peninsula. Two species of Wallucina live around Australia, W. assimilis is endemic occurring at southerly locations from New South Wales to North West Cape, while the tropical species, W. fijiensis, is found in island habitats of Queensland but is widely distributed in the Indo-West Pacific. Another new genus, Funafutia, is proposed for the species, F. levukana, recorded from Australia for the first time. Details of anatomy are provided for Pillucina vietnamica, W. assimilis and C. striata. Symbiotic bacteria are confirmed for the first time in the lateral zone of gill filaments of Pillucina vietnamica and Wallucina assimilis.

Recent years have seen a growing interest in the direct and indirect roles of organisms, and more explicitly of organic matter, in the crystallization of minerals in sediments. Two bivalve genera form extensive biofilms that are apparently responsible for the growth of a variety of isolated crystals together with a marine cement. Granicorium indutum and Samarangia quadrangularis are infaunal species that cover their shells with a cemented coating of sand, sculpted to mimic the surface ornament typical of many bivalves. Granicorium has an exceptionally mobile mantle margin that produces large volumes of mucus, harboring a diverse microbial community. The sand grains surrounding both species are initially bound by a biofilm that provides structural integrity but also acts, like others, as a template for the crystallization of a variety of carbonate polymorphs. These include varied prismatic crystals, rice-grain and wheatsheaf forms and, more importantly, large volumes of acicular crystals indistinguishable from typical marine cements. The distribution of these crystals is related to positions accessible to the mantle of the animal and in Samarangia appears to result from the active emplacement of grains and mucus several times a year. Summing the evidence, it seems that these species are responsible not only for the biomineralization involved in the formation of their shells but also for crystallization mediated through biofilms and for the generation of cements that are morphologically indistinguishable from typical marine cements. The boundaries between these three strategies may be closer than we think.

Field observations of Oliva tigridella in Queensland revealed a diet of small gastropods, bivalves, echinoids and holothurians. Foraging animals were observed carrying prey attached to the rear of the foot. Up to seven prey items were recorded on the foot. Analysis of gut co ntents showed a high frequency of holothurian spicules although these were rare amongst items found on the foot. This study reveals a previously unrecorded catholic diet of olives although small gastropods and bivalves are important components.

Two veneroidean bivalves Granicorium indutum from Australia and Samarangia quadrangularis from the tropical Indo-Pacific region, cement a thick, hard layer of sand over most of their shells. In Granicorium this layer forms low commarginal ribs while in Samarangia it forms more prominent radial features. Sand grains are cemented to the shell and to each other with growths of a crystalline aragonitic cement similar in morphology to inorganic marine cements. Both species secrete mucus layers at the growing shell margin which initially hold the sediment grains together and form a substrate for the nucleation and growth of calcium carbonate crystals. The ribs of Samarangia are formed by the accretion of successive sheets of spherulitic growths. In G. indutum, the middle and outermost of two inner mantle folds are large, glandular and capable of considerable extension beyond the shell margin. Mucus secreted by the folds contains abundant bacteria and small calcium carbonate crystals. It is proposed that initial nucleation of the calcium carbonate cement takes place within this biofilm possibly mediated by the bacteria. The function of the sand layers is unknown but predation resistance and protection of the shells from endobionts are the most likely possibilities.

Intensive sampling of molluscs from the intertidal to depths of 800 m around the islands of Guadeloupe in the Lesser Antilles (KARUBENTHOS 2012, 2015) recovered 25 species of Lucinidae. All the Guadeloupe species are described and illustrated including details of larval shells and the taxonomy revised within the context of the wider western Atlantic fauna and recent classifications. Concurrent molecular analysis has helped separate frequently confounded species. ‘ Myrtea’ pristiphora is placed in the Leucosphaerine genus Myrtina previously known from the Indo-West Pacific. A second western Atlantic species of Callucina, C. pauperatus previously known from the Pliocene of Jamaica is recognised from the southern Caribbean and off Brazil. The deeper water species ‘Myrteopis’ lens is placed in Afrolucina previously known from the eastern Atlantic. Lucinids commonly identified as Ctena orbiculata are shown to belong to two distinct species, C. orbiculata in the Gulf of Mexico and Florida and C. imbricatula in the Caribbean. Epicodakia is recognised for the first time in the western Atlantic with E. pectinata widely distributed across the region and E. filiata recorded from deeper water. Three species of Lucina are recognised, Lucina pensylvanica in the Gulf of Mexico and Florida and the similar Lucina roquesana from the Caribbean and Bahamas while the smaller L. aurantia has a wide distribution from central America to the Bahamas. A new species of Parvilucina, P. latens is described; this is similar to P. pectinella but has an internal ligament. The long problematic species ‘ Codakia’ cubana is assigned to Ferrocina . A new genus, Guyanella is introduced for Parvilucina clenchi the smallest known lucinid. A critical reassessment of the lucinid fauna of the western Atlantic Ocean identifies 46 species for the region with 33 of these living at depths less than 200 m. Deeper-water habitats have been much less investigated except at sites of hydrocarbon seeps. Some species are widespread throught the whole region but others have more restricted ranges. Notable are species pairs, for example of Ctena, Lucina , Lucinisca and Parvilucina that are either largely Caribbean or Gulf of Mexico/Floridian in distribution. Although extralimital, two problematic species from the mid-south Atlantic island of St Helena are refigured and placed in Cavilinga .

Revived interest in molluscan phylogeny has resulted in a torrent of molecular sequence data from phylogenetic, mitogenomic, and phylogenomic studies. Despite recent progress, basal relationships of the class Bivalvia remain contentious, owing to conflicting morphological and molecular hypotheses. Marked incongruity of phylogenetic signal in datasets heavily represented by nuclear ribosomal genes versus mitochondrial genes has also impeded consensus on the type of molecular data best suited for investigating bivalve relationships. To arbitrate conflicting phylogenetic hypotheses, we evaluated the utility of four nuclear protein-encoding genes—ATP synthase β, elongation factor-1α, myosin heavy chain type II, and RNA polymerase II—for resolving the basal relationships of Bivalvia. We sampled all five major lineages of bivalves (Archiheterodonta, Euheterodonta [including Anomalodesmata], Palaeoheterodonta, Protobranchia, and Pteriomorphia) and inferred relationships using maximum likelihood and Bayesian approaches. To investigate the robustness of the phylogenetic signal embedded in the data, we implemented additional datasets wherein length variability and/or third codon positions were eliminated. Results obtained include (a) the clade (Nuculanida + Opponobranchia), i.e., the traditionally defined Protobranchia; (b) the monophyly of Pteriomorphia; (c) the clade (Archiheterodonta + Palaeoheterodonta); (d) the monophyly of the traditionally defined Euheterodonta (including Anomalodesmata); and (e) the monophyly of Heteroconchia, i.e., (Palaeoheterodonta + Archiheterodonta + Euheterodonta). The stability of the basal tree topology to dataset manipulation is indicative of signal robustness in these four genes. The inferred tree topology corresponds closely to those obtained by datasets dominated by nuclear ribosomal genes (18S rRNA and 28S rRNA), controverting recent taxonomic actions based solely upon mitochondrial gene phylogenies.

To re-evaluate the relationships of the major bivalve lineages, we amassed detailed morpho-anatomical, ultrastructural and molecular sequence data for a targeted selection of exemplar bivalves spanning the phylogenetic diversity of the class. We included molecular data for 103 bivalve species (up to five markers) and also analysed a subset of taxa with four additional nuclear protein-encoding genes. Novel as well as historically employed morphological characters were explored, and we systematically disassembled widely used descriptors such as gill and stomach ‘types’. Phylogenetic analyses, conducted using parsimony direct optimisation and probabilistic methods on static alignments (maximum likelihood and Bayesian inference) of the molecular data, both alone and in combination with morphological characters, offer a robust test of bivalve relationships. A calibrated phylogeny also provided insights into the tempo of bivalve evolution. Finally, an analysis of the informativeness of morphological characters showed that sperm ultrastructure characters are among the best morphological features to diagnose bivalve clades, followed by characters of the shell, including its microstructure. Our study found support for monophyly of most broadly recognised higher bivalve taxa, although support was not uniform for Protobranchia. However, monophyly of the bivalves with protobranchiate gills was the best-supported hypothesis with incremental morphological and/or molecular sequence data. Autobranchia, Pteriomorphia, Heteroconchia, Palaeoheterodonta, Archiheterodonta, Euheterodonta, Anomalodesmata and Imparidentia new clade ( = Euheterodonta excluding Anomalodesmata) were recovered across analyses, irrespective of data treatment or analytical framework. Another clade supported by our analyses but not formally recognised in the literature includes Palaeoheterodonta and Archiheterodonta, which emerged under multiple analytical conditions. The origin and diversification of each of these major clades is Cambrian or Ordovician, except for Archiheterodonta, which diverged from Palaeoheterodonta during the Cambrian, but diversified during the Mesozoic. Although the radiation of some lineages was shifted towards the Palaeozoic (Pteriomorphia, Anomalodesmata), or presented a gap between origin and diversification (Archiheterodonta, Unionida), Imparidentia showed steady diversification through the Palaeozoic and Mesozoic. Finally, a classification system with six major monophyletic lineages is proposed to comprise modern Bivalvia: Protobranchia, Pteriomorphia, Palaeoheterodonta, Archiheterodonta, Anomalodesmata and Imparidentia.