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Dataset and weights release for preprint "Segmentation of XCO2 images with deep learning: application to synthetic plumes from cities and power plants" Joffrey Dumont Le Brazidec et al.

The idea of using machine learning (ML) methods to reconstruct the dynamics of a system is the topic of recent studies in the geosciences, in which the key output is a surrogate model meant to emulate the dynamical model. In order to treat sparse and noisy observations in a rigorous way, ML can be combined to data assimilation (DA). This yields a class of iterative methods in which, at each iteration a DA step assimilates the observations, and alternates with a ML step to learn the underlying dynamics of the DA analysis. In this article, we propose to use this method to correct the error of an existent, knowledge-based model. In practice, the resulting surrogate model is an hybrid model between the original (knowledge-based) model and the ML model. We demonstrate numerically the feasibility of the method using a two-layer, two-dimensional quasi-geostrophic channel model. Model error is introduced by the means of perturbed parameters. The DA step is performed using the strong-constraint 4D-Var algorithm, while the ML step is performed using deep learning tools. The ML models are able to learn a substantial part of the model error and the resulting hybrid surrogate models produce better short- to mid-range forecasts. Furthermore, using the hybrid surrogate models for DA yields a significantly better analysis than using the original model.

This work demonstrates the efficiency of using iterative ensemble smoothers to estimate the parameters of an SEIR model. We have extended a standard SEIR model with age-classes and compartments of sick, hospitalized, and dead. The data conditioned on are the daily numbers of accumulated deaths and the number of hospitalized. Also, it is possible to condition the model on the number of cases obtained from testing. We start from a wide prior distribution for the model parameters; then, the ensemble conditioning leads to a posterior ensemble of estimated parameters yielding model predictions in close agreement with the observations. The updated ensemble of model simulations has predictive capabilities and include uncertainty estimates. In particular, we estimate the effective reproductive number as a function of time, and we can assess the impact of different intervention measures. By starting from the updated set of model parameters, we can make accurate short-term predictions of the epidemic development assuming knowledge of the future effective reproductive number. Also, the model system allows for the computation of long-term scenarios of the epidemic under different assumptions. We have applied the model system on data sets from several countries, i.e., the four European countries Norway, England, The Netherlands, and France; the province of Quebec in Canada; the South American countries Argentina and Brazil; and the four US states Alabama, North Carolina, California, and New York. These countries and states all have vastly different developments of the epidemic, and we could accurately model the SARS-CoV-2 outbreak in all of them. We realize that more complex models, e.g., with regional compartments, may be desirable, and we suggest that the approach used here should be applicable also for these models.