Eyal Gal, Imad Riachi, Jean Denis Courcol, Guy Antoine Atenekeng Kahou, Maria Toledo-Rodriguez, Taylor Howard Newton, Alberto Muñoz-Céspedes, Thomas Tränkler, Ricardo Silva, Etay Hay, Christian Rössert, Shruti Muralidhar, Juan Palacios, Daniel Nachbaur, Felix Schürmann, Yihwa Kim, Vincent Delattre, Giuseppe Chindemi, Rodrigo Perin, Richard Walker, Jean Pierre Ghobril, Joe W. Graham, Bruno R. C. Magalhães, Gilad Silberberg, Athanassia Chalimourda, Fabien Delalondre, Carlos Aguado Sanchez, Daniel Keller, Selim Arsever, Konstantinos Sfyrakis, Luis Pastor, Sebastien Lasserre, Farhan Tauheed, Max Nolte, Juan Hernando, Marwan Abdellah, Albert Gidon, Michael L. Hines, Lida Kanari, Anirudh Gupta, Srikanth Ramaswamy, Georges Khazen, Stefano M. Zaninetta, Pramod Kumbhar, Aleksandr Ovcharenko, Henry Markram, Jean Vincent Le Bé, Sean Hill, Werner Van Geit, Ahmet Bilgili, Michael Gevaert, Rajnish Ranjan, Michael W. Reimann, Zoltán F. Kisvárday, Stefan Eilemann, Jeffrey Muller, John Kenyon, Eilif Muller, Nenad Buncic, Juan Luis Riquelme, Valentin Haenel, Keerthan Muthurasa, Julie Meystre, Thomas K. Berger, Anastasia Ailamaki, Martin Telefont, Lidia Alonso-Nanclares, José-Rodrigo Rodríguez, Ying Shi, Yun Wang, James Dynes, Jafet Villafranca Diaz, Idan Segev, Thomas Heinis, Raphael Dumusc, Shaul Druckmann, Angel Merchán-Pérez, Benjamin Roy Morrice, Nicolas Antille, James G. King, Julian C. Shillcock, Javier DeFelipe, European Commission, Gatsby Charitable Foundation, Ministerio de Economía y Competitividad (España), Hebrew University of Jerusalem, École Polytechnique Fédérale de Lausanne, Swiss National Supercomputing Centre, Swiss National Science Foundation, and Office of Naval Research (US)
We present a first-draft digital reconstruction of the microcircuitry of somatosensory cortex of juvenile rat. The reconstruction uses cellular and synaptic organizing principles to algorithmically reconstruct detailed anatomy and physiology from sparse experimental data. An objective anatomical method defines a neocortical volume of 0.29 ± 0.01 mm3 containing ∼31,000 neurons, and patch-clamp studies identify 55 layer-specific morphological and 207 morpho-electrical neuron subtypes. When digitally reconstructed neurons are positioned in the volume and synapse formation is restricted to biological bouton densities and numbers of synapses per connection, their overlapping arbors form ∼8 million connections with ∼37 million synapses. Simulations reproduce an array of in vitro and in vivo experiments without parameter tuning. Additionally, we find a spectrum of network states with a sharp transition from synchronous to asynchronous activity, modulated by physiological mechanisms. The spectrum of network states, dynamically reconfigured around this transition, supports diverse information processing strategies., The work was supported by funding from the EPFL to the Laboratory of Neural Microcircuitry (LNMC) and funding from the ETH Domain for the Blue Brain Project (BBP). Additional support was provided by funding for the Human Brain Project from the European Union Seventh Framework Program (FP7/2007-2013) under grant agreement no. 604102 (HBP). Further funding came from The Gatsby Charitable Foundation ; the Cajal Blue Brain Project, Ministerio de Economia y Competitividad Spanish Ministry of Education and Science ; and an EPFL-Hebrew University Collaborative Grant . In the years 2005–2009, the Blue Gene/L system was funded by the EPFL . Financial support for the subsequent CADMOS Blue Gene/P and Blue Gene/Q systems was provided by the Canton of Geneva, Canton of Vaud, Hans Wilsdorf Foundation , Louis-Jeantet Foundation , University of Geneva , University of Lausanne , and École Polytechnique Fédérale de Lausanne . The BlueBrain IV BlueGene/Q system is financed by ETH Board Funding to the Blue Brain Project as a National Research Infrastructure and hosted at the Swiss National Supercomputing Center (CSCS). A large proportion of the data used in this study was generated at the Weizmann Institute for Science, Israel between 1996 and 2002 through the support of Thomas McKenna from the Office of Naval Research, USA.