238 results on '"Kei Miyamoto"'
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2. STUDY ON THE WOODEN FRAME TECHNOLOGY OF ‘TODAI MOKEI’, ONE OF THE ODAWARA CASTLE KEEP MODELS
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Kei MIYAMOTO, Masanori TAKAHASHI, and Osamu GOTO
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Architecture ,Building and Construction - Published
- 2023
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3. Analysis of Occurrence Factors of Vacant Houses by Interpretability Methods in Machine Learning
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Katsuya Mizusawa, Kei Miyamoto, Shota Tamura, and Takahiro Tanaka
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- 2022
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4. First distributional record of Parascolopsis akatamae Miyamoto, McMahan, & Kaneko, 2020, a dwarf monocle bream (Perciformes, Nemipteridae), from Indian waters
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Gopalan Mahadevan, Perumal Murugesan, Giri Bhavan Sreekanth, Kei Miyamoto, and Caleb D. McMahan
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Ecology ,Ecology, Evolution, Behavior and Systematics - Abstract
New records of Parascolopsis akatamae Miyamoto,McMahan,&Kaneko,2020 are reported from India’s southeast coast. Three specimens were collected in April 2021 on the Parangipettai coast, Tamil Nadu, India. We examined and compared morphometric and meristic characters of our specimens with published data from the holotype. The new India records expand the known distribution of P. akatamae, which had previously been reported from southern Japan, Taiwan, Indonesia, and Thailand. Parascolopsis akatamae is a new addition to the list of marine fishes from Indian coastal waters.
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- 2022
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5. Compensatory Pelvic Retro-Rotation Associated with a Decreased Quality of Life in Patients with Normal Sagittal Balance
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Kei Miyamoto, Hiroyasu Ogawa, Kazuichiro Ohnishi, Tetsuya Shimokawa, Takahiro Masuda, Haruhiko Akiyama, Kazunari Fushimi, and Akira Hioki
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Pelvic tilt ,030222 orthopedics ,medicine.medical_specialty ,business.industry ,Urology ,Low back pain ,Sagittal plane ,03 medical and health sciences ,0302 clinical medicine ,Lumbar ,medicine.anatomical_structure ,Quality of life ,medicine ,Back pain ,Orthopedics and Sports Medicine ,Surgery ,In patient ,Observational study ,medicine.symptom ,business ,030217 neurology & neurosurgery - Abstract
Study Design: Cross-sectional observational study.Purpose: To examine whether pelvic rotation as a compensatory mechanism for sagittal imbalance is related to quality of life (QOL).Overview of Literature: Poor sagittal alignment is associated with compensatory pelvic retroversion and decreased QOL. Whether the compensatory pelvic tilt (PT) influences QOL is unclear.Methods: Overall, 134 subjects aged ≥20 years with lower back pain were included (104 females; mean age, 70±9.8 years). Sagittal vertical alignment (SVA) and PT were analyzed radiographically. Patients were stratified into three groups based on SVA values: good alignment (group G), intermediate alignment (group I), and poor sagittal alignment (group P). Patients in group I were further categorized into two groups: low PT and high PT. The Japanese Orthopaedic Association Back Pain Evaluation Questionnaire (JOABPEQ) was used for clinical assessment, and the scores were compared between groups.Results: As SVA increased, PT and lumbar lordosis (LL) increased and decreased, respectively. PT and LL differed significantly between groups G and P (pp
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- 2022
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6. Transition to the structurally vulnerable nuclear state is an integral part of mouse embryonic development
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Tanaka Masahito, Rin Sakanoue, Atsushi Takasu, Naoko Watanabe, Yuta Shimamoto, and Kei Miyamoto
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Upon fertilization, germ cells are reprogrammed to acquire the ability to develop into an entire organism. Whereas extensive studies have focused on epigenetic reprogramming of chromatin states during development, changes of the nucleus that surrounds chromatin are ill-defined. Here, we show that nuclei become structurally and mechanically vulnerable at the 2-cell stage during mouse embryonic development. The 2-cell stage nuclei are extraordinarily plastic and deformable in contrast to those of 1-cell and 4-cell stages. The mechanically vulnerable nuclear state is attained by autophagy-mediated loss of lamin B1 from the nuclear membrane. This developmentally programmed lamin B1 dynamics is required for chromatin organization and major zygotic genome activation. We thus demonstrate that structural reprogramming of nuclei is a major determinant of embryonic gene expression and acquisition of totipotency.
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- 2023
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7. Author Reply to Peer Reviews of Incomplete activation of developmentally required genes Alyref1 and Gabpb1 leads to preimplantation arrest in cloned mouse embryos
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Kei Miyamoto, Masahito Ikawa, Kazuya Matsumoto, Masayuki Anzai, Misaki Nakamura, Yuma Imasato, Miki Mori, Masaya Kaji, Mizuto Hamanaka, and Shunya Ihashi
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- 2022
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8. Improved development of mouse somatic cell nuclear transfer embryos by chlamydocin analogues, class I and IIa histone deacetylase inhibitors†
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Hiroki Inoue, Nobuhiko Itami, Kimiko Inoue, Atsuo Ogura, Norikazu Nishino, Kei Miyamoto, Akihiro Ito, Eiji Mizutani, Teruhiko Wakayama, Minoru Yoshida, Jin-Moon Kim, Satoshi Kamimura, Narumi Ogonuki, and Shunya Ihashi
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0301 basic medicine ,Nuclear Transfer Techniques ,medicine.drug_class ,Biology ,Peptides, Cyclic ,somatic cell nuclear transfer ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,In vivo ,medicine ,Animals ,Epigenetics ,histone deacetylase inhibitor ,mouse ,Cloning ,Hydroxamic acid ,cloned embryo ,Histone deacetylase inhibitor ,Cell Biology ,General Medicine ,AcademicSubjects/SCI01070 ,Cell biology ,Histone Deacetylase Inhibitors ,030104 developmental biology ,Trichostatin A ,Reproductive Medicine ,chemistry ,030220 oncology & carcinogenesis ,histone deacetylase ,Oocytes ,AcademicSubjects/MED00773 ,Somatic cell nuclear transfer ,Histone deacetylase ,Research Article ,medicine.drug - Abstract
In mammalian cloning by somatic cell nuclear transfer (SCNT), the treatment of reconstructed embryos with histone deacetylase (HDAC) inhibitors improves efficiency. So far, most of those used for SCNT are hydroxamic acid derivatives—such as trichostatin A—characterized by their broad inhibitory spectrum. Here, we examined whether mouse SCNT efficiency could be improved using chlamydocin analogues, a family of newly designed agents that specifically inhibit class I and IIa HDACs. Development of SCNT-derived embryos in vitro and in vivo revealed that four out of five chlamydocin analogues tested could promote the development of cloned embryos. The highest pup rates (7.1–7.2%) were obtained with Ky-9, similar to those achieved with trichostatin A (7.2–7.3%). Thus, inhibition of class I and/or IIa HDACs in SCNT-derived embryos is enough for significant improvements in full-term development. In mouse SCNT, the exposure of reconstructed oocytes to HDAC inhibitors is limited to 8–10 h because longer inhibition with class I inhibitors causes a two-cell developmental block. Therefore, we used Ky-29, with higher selectivity for class IIa than class I HDACs for longer treatment of SCNT-derived embryos. As expected, 24-h treatment with Ky-29 up to the two-cell stage did not induce a developmental block, but the pup rate was not improved. This suggests that the one-cell stage is a critical period for improving SCNT cloning using HDAC inhibitors. Thus, chlamydocin analogues appear promising for understanding and improving the epigenetic status of mammalian SCNT-derived embryos through their specific inhibitory effects on HDACs., Chlamydocin analogues, a novel family of inhibitors specific for class I and IIb HDACs, significantly improved the ability of mouse SCNT-derived embryos to produce offspring.
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- 2021
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9. Structural alteration of the nucleus for the reprogramming of gene expression
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Kei Miyamoto and Junko Tomikawa
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Cell Nucleus ,0301 basic medicine ,Regulation of gene expression ,Cellular differentiation ,Embryonic Development ,Gene Expression ,Cell Biology ,Biology ,Cellular Reprogramming ,Biochemistry ,Chromatin ,Cell biology ,03 medical and health sciences ,Cell nucleus ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,Transcription (biology) ,030220 oncology & carcinogenesis ,Gene expression ,medicine ,Molecular Biology ,Nucleus ,Reprogramming - Abstract
The regulation of gene expression is a critical process for establishing and maintaining cellular identity. Gene expression is controlled through a chromatin-based mechanism in the nucleus of eukaryotic cells. Recent studies suggest that chromatin accessibility and the higher-order structure of chromatin affect transcriptional outcome. This is especially evident when cells change their fate during development and nuclear reprogramming. Furthermore, non-chromosomal contents of the cell nucleus, namely nucleoskeleton proteins, can also affect chromatin and nuclear structures, resulting in transcriptional alterations. Here, we review our current mechanistic understanding about how chromatin and nuclear structures impact transcription in the course of embryonic development, cellular differentiation and nuclear reprogramming, and also discuss unresolved questions that remain to be addressed in the field.
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- 2021
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10. The First Stranding Record of Longman’s Beaked Whale (Indopacetus pacificus) in Okinawa, Japan
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Hideyoshi Yoshida, Shingo Fukada, Naoto Higashi, Suguru Higa, Haruka Ito, Kei Yamazaki, Keiichi Ueda, Nozomi Kobayashi, Koji Tokutake, Haruna Okabe, Kei Miyamoto, and Isao Kawazu
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Fishery ,Beaked whale ,Geography ,biology ,Animal Science and Zoology ,Aquatic Science ,biology.organism_classification ,Indopacetus pacificus ,Nature and Landscape Conservation - Published
- 2021
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11. Northernmost Record of the Surgeonfish Acanthurus nigros (Teleostei: Acanthuridae) from Minamidaitojima Island, Southern Japan
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Kei Miyamoto, Nozomi Hanahara, and Shin-ichiro Oka
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Fishery ,Teleostei ,Acanthurus ,Animal Science and Zoology ,Taxonomy (biology) ,Biology ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics ,Acanthuridae ,Acanthurus nigroris - Published
- 2021
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12. Nucleoskeleton proteins for nuclear dynamics
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Kei Miyamoto and Masahiko Harata
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Nuclear Envelope ,Cellular differentiation ,Biology ,Biochemistry ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Transcriptional regulation ,Animals ,Humans ,Nuclear Matrix ,Cytoskeleton ,Molecular Biology ,Actin ,030304 developmental biology ,Cell Nucleus ,0303 health sciences ,Nuclear Proteins ,Cell Differentiation ,General Medicine ,Actins ,Lamins ,Chromatin ,Cell biology ,Cell nucleus ,medicine.anatomical_structure ,Gene Expression Regulation ,Nucleus ,030217 neurology & neurosurgery ,Lamin - Abstract
The eukaryotic nucleus shows organized structures of chromosomes, transcriptional components and their associated proteins. It has been believed that such a dense nuclear environment prevents the formation of a cytoskeleton-like network of protein filaments. However, accumulating evidence suggests that the cell nucleus also possesses structural filamentous components to support nuclear organization and compartments, which are referred to as nucleoskeleton proteins. Nucleoskeleton proteins including lamins and actin influence nuclear dynamics including transcriptional regulation, chromatin organization and DNA damage responses. Furthermore, these nucleoskeleton proteins play a pivotal role in cellular differentiation and animal development. In this commentary, we discuss how nucleoskeleton-based regulatory mechanisms orchestrate nuclear dynamics.
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- 2021
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13. Nuclear transfer system for the direct induction of embryonic transcripts from intra- and cross-species nuclei using mouse 4-cell embryos
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Junko Tomikawa, Christopher A. Penfold, Rena Hatakeyama, and Kei Miyamoto
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Cell Nucleus ,Cytoplasm ,Mice ,Nuclear Transfer Techniques ,General Immunology and Microbiology ,General Neuroscience ,Oocytes ,Animals ,General Biochemistry, Genetics and Molecular Biology ,Metaphase - Abstract
Reprogramming of somatic nuclei toward the embryonic state has been studied using nuclear transfer (NT) to an oocyte at the metaphase II (MII) stage. In this NT, a somatic nucleus transplanted into an MII oocyte of the same species undergoes DNA replication and cell division before activating embryonic genes. Here, we describe a direct NT protocol using 4-cell stage mouse embryos that enables reprogramming of intra- and cross-species nuclei to express embryonic genes without requiring DNA replication and cell division. For complete details on the use and execution of this protocol, please refer to Tomikawa et al. (2021).
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- 2022
14. Incomplete activation of developmentally required genes Alyref1 and Gabpb1 leads to preimplantation arrest in cloned mouse embryos
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Shunya Ihashi, Mizuto Hamanaka, Masaya Kaji, Miki Mori, Yuma Imasato, Misaki Nakamura, Masayuki Anzai, Kazuya Matsumoto, Masahito Ikawa, and Kei Miyamoto
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SUMMARYDifferentiated cell nuclei can be reprogrammed after nuclear transfer (NT) to oocytes and the produced NT embryos can give rise to cloned animals. However, development of NT embryos is often hampered by recurrent reprogramming failures, including the incomplete activation of developmental genes, yet specific genes responsible for the arrest of NT embryos are not well understood. Here, we searched for developmentally important genes among the reprogramming-resistant H3K9me3-repressed genes, and identified Alyref and Gabpb1 by siRNA screening. Gene knockout of Alyref and Gabpb1 by the CRISPR/Cas9 system resulted in early developmental arrest in mice. Single embryo RNA-seq revealed that Alyref is needed for the formation of inner cell mass. The supplement of Alyref and Gabpb1 by mRNA injection supported efficient preimplantation development of cloned embryos. Thus, our study shows that the H3K9me3-repressed genes contain developmentally required genes and the incomplete activation of such genes results in preimplantation arrest of cloned embryos.
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- 2022
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15. EARLY CHANGES IN SHOULDER BALANCE AFTER SELECTIVE ANTERIOR CORRECTION AND FUSION FOR LUMBAR SCOLIOSIS
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Kei Miyamoto, Tetsuya Shimokawa, Takahiro Masuda, Ahmed Abdelaal, Katsuji Shimizu, Haruhiko Akiyama, and Akira Hioki
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musculoskeletal diseases ,Cobb angle ,business.industry ,Radiography ,Lumbar Curve ,medicine.anatomical_structure ,Lumbar ,Clavicle ,Correction (change) ,Medicine ,Lumbar scoliosis ,business ,Nuclear medicine ,Balance (ability) - Abstract
Some patients developed shoulder imbalance after selective anterior correction of lumbar scoliosis with spontaneous rebalances later on. We conducted this retrospective radiographic analysis study to study the effect of selective anterior correction of thoracolumbar and lumbar scoliosis on shoulder balance. Standing X-ray films of 15 patients with lumbar scoliosis operated by anterior correction at preoperative, 3, 6 & 12 months postoperative were used. Spine and shoulder balance parameters were measured. Correlations between changes in shoulder balance and spine parameters were evaluated. Shoulder height parameters showed early postoperative change from positive or neutral to negative shoulder balance, Lumbar and thoracic Cobb angles showed immediate postoperative improvement with a slight later increase contributing to shoulder rebalance mechanisms. Changes in T1 tilt was correlated to change in thoracic Cobb angle at 3 months post op. (r= 0.515 p =.049), CRCI was correlated to difference between changes in lumbar Cobb angle and changes in thoracic Cobb angle (r= 0.56 p= 0.030), close correlation between Correction change ratio and T1 tilt, FRA, CA and CPH was shown (p=0.008, 0.016, 0.011 & 0.012). Spontaneous Correction of shoulder balance after anterior correction of lumbar scoliosis is likely to occur during the first postoperative year. Flexibility of the thoracic curve was a major determinant in the shoulder re-balance, ratio between correction of lumbar curve and correction of thoracic curve may have a prognostic value in shoulder rebalance after anterior correction surgery. Clavicle angle has the best predictor for postoperative shoulder balance improvement.
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- 2020
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16. Morphological and genetic identification of formalin-fixed gobioid larvae and description of postflexion larvae of Paragunnellichthys sp. and Ctenogobiops feroculus
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Kei Miyamoto, Shin-ichiro Oka, and Nozomi Hanahara
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0106 biological sciences ,Larva ,animal structures ,Wormfish ,biology ,fungi ,Goby ,Zoology ,04 agricultural and veterinary sciences ,Ctenogobiops ,biology.organism_classification ,MT-RNR1 ,010603 evolutionary biology ,01 natural sciences ,Hypervariable region ,040102 fisheries ,0401 agriculture, forestry, and fisheries ,Identification (biology) ,Gene ,Ecology, Evolution, Behavior and Systematics - Abstract
Gobioid larvae collected from the coast of Okinawa Island, southern Japan, were identified on the basis of a combination of morphological characters and a sequence of a hypervariable region of mitochondrial 12S ribosomal RNA (12S rRNA) gene (138–145 base pairs). A short-term formalin fixation technique enabled identification using both morphological and genetic methods. Thirteen of the 21 types of gobioid larvae assessed were identified to the species level. Additionally, we described the morphology of the postflexion larvae of wormfish Paragunnellichthys sp. and shrimp-associated goby Ctenogobiops feroculus, identified for the first time in their respective genera.
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- 2020
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17. Single-cell profiling of transcriptomic changes during
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Hiroki, Takeuchi, Mari, Yamamoto, Megumi, Fukui, Akihiro, Inoue, Tadashi, Maezawa, Mikiko, Nishioka, Eiji, Kondo, Tomoaki, Ikeda, Kazuya, Matsumoto, and Kei, Miyamoto
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Human oocytes were retrieved by follicular puncture andGlobal gene expression profiles were similar among oocytes at the same maturation stage, while a small number of oocytes showed distinct transcriptomes from those at the corresponding maturation stage. Differential gene expression analysis identified hundreds of transcripts that dynamically altered their expression during IVM, and we revealed molecular pathways and upstream regulators that may govern oocyte maturation. Furthermore, oocytes that were delayed in their maturation showed distinct transcriptomes. Finally, we identified genes whose transcripts were enriched in each stage of oocyte maturation.Our work uncovers transcriptomic changes during human oocyte IVM and the differential gene expression profile of each oocyte.
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- 2022
18. Single‐cell profiling of transcriptomic changes during in vitro maturation of human oocytes
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Hiroki Takeuchi, Mari Yamamoto, Megumi Fukui, Akihiro Inoue, Tadashi Maezawa, Mikiko Nishioka, Eiji Kondo, Tomoaki Ikeda, Kazuya Matsumoto, and Kei Miyamoto
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Reproductive Medicine ,Cell Biology - Published
- 2022
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19. Actin nucleoskeleton in embryonic development and cellular differentiation
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Sivagami Gunasekaran, Yasuki Miyagawa, and Kei Miyamoto
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Cell Nucleus ,Actin Cytoskeleton ,Embryonic Development ,Cell Differentiation ,Nuclear Matrix ,Cell Biology ,Chromatin Assembly and Disassembly ,Actins - Abstract
Dynamic assembly and disassembly of actin proteins play a key role in the cytoskeleton, but the cellular functions of actin are not only restricted to the cytoplasmic compartment. Recent studies have shown that actin spatiotemporally changes its polymerized state in the nucleus as well and such dynamic nature of actin is relevant to key nuclear events including gene expression, DNA damage response and chromatin organization. In this review, we highlight emerging roles of actin in the nuclear compartment especially in the context of embryonic development and cellular differentiation. We first explain how the actin nucleoskeleton can be formed and function in cells. Notably, nuclear actin dynamics are greatly altered when cell fates change, such as after fertilization and T cell differentiation. We discuss how the dynamic actin nucleoskeleton contributes to accomplishing developmental programs.
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- 2021
20. Ectopic gas in the fibular graft after anterior cervical corpectomy and fusion
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Asae Nozawa, Hiroki Kato, Hideo Hosoe, Katsuji Shimizu, Kazunari Fushimi, Chizuo Iwai, Kei Miyamoto, Haruhiko Akiyama, Masayuki Matsuo, Kazunari Yamada, Satoshi Nozawa, and Masaya Kawaguchi
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medicine.medical_specialty ,medicine.medical_treatment ,Radiography ,Computed tomography ,Diseases of the musculoskeletal system ,Ectopic gas ,Rheumatology ,Internal medicine ,medicine ,Humans ,Pseudoarthrosis ,Orthopedics and Sports Medicine ,Clinical significance ,Corpectomy ,Early onset ,Retrospective Studies ,Bone Transplantation ,medicine.diagnostic_test ,business.industry ,Research ,Spinal Fusion ,Treatment Outcome ,RC925-935 ,Fibula ,Orthopedic surgery ,Bone bridge ,Cervical Vertebrae ,Radiology ,business ,Anterior cervical corpectomy and fusion - Abstract
Background Ectopic gas in the graft is occasionally encountered upon follow-up computed tomography (CT) after anterior cervical corpectomy and fusion (ACCF). However, most cases lack inflammatory responses and manifestations of infection. Although the clinical significance of ectopic gas in the graft has not yet been established, to the best of our knowledge, no previous studies have described ectopic gas in the graft after ACCF. This study evaluated ectopic gas in the fibular graft upon follow-up CT after ACCF. Methods We reviewed 112 patients who underwent ACCF and follow-up CT, with a minimum follow-up period of 3 years. CT images were retrospectively reviewed to confirm the presence of ectopic gas in the graft and bone fusion. Bone fusion was defined as follows: mobility less than 2 mm between spinous processes on the flection-extension radiograph or a bone bridge on CT images. Results Of the 112 patients, 30 (27%) patients had ectopic gas in the fibular grafts. Among them, ectopic gas was initially observed 3 months after surgery (early onset) in 23 (77%) patients and 6 months after surgery (late-onset) in the remaining seven (23%) patients. Upon the latest follow-up CT, ectopic gas more frequently remained in late-onset (4/7, 57%) rather than in early-onset (3/23, 13%) cases (p = 0.033). Bone fusion was not observed when CT images exhibited ectopic gas in the graft, whereas ectopic gas was not observed when CT images exhibited bone fusion. Conclusion Ectopic gas in the fibular graft was observed at both early and late-onset after ACCF; late-onset gas remained significantly. The remaining gas was strongly associated with pseudoarthrosis; therefore, pseudoarthrosis should be considered when ectopic gas in the graft is observed on CT images.
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- 2021
21. NF-kB decoy oligodeoxynucleotide preserves disc height in a rabbit anular-puncture model and reduces pain induction in a rat xenograft-radiculopathy model
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Y A Asanuma, S Miyazaki, K Kato, Koji Akeda, J Yamada, Mary Ellen Lenz, Toru Fujiwara, Howard S. An, T Nakazawa, Koichi Masuda, Carol Muehleman, Kei Miyamoto, and K Asanuma
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Pathology ,medicine.medical_specialty ,RD1-811 ,intervertebral disc-degeneration ,Diseases of the musculoskeletal system ,Intervertebral Disc Degeneration ,Punctures ,intervertebral disc-repair/regeneration ,Proinflammatory cytokine ,Gene expression ,Distribution (pharmacology) ,Medicine ,Animals ,Intervertebral Disc ,Radiculopathy ,Transcription factor ,animal models-general ,decoy ,business.industry ,NF-kappa B ,nuclear factor-κb ,Histology ,musculoskeletal system ,Disc height ,Rats ,Disease Models, Animal ,intradiscal injection ,RC925-935 ,Oligodeoxyribonucleotides ,Heterografts ,Tumor necrosis factor alpha ,intervertebral disc-histology ,Surgery ,Rabbits ,business ,Decoy ,Low Back Pain - Abstract
While it is known that the degenerated intervertebral disc (IVD) is one of the primary reasons for low-back pain and subsequent need for medical care, there are currently no established effective methods for direct treatment. Nuclear factor-κB (NF-κB) is a transcription factor that regulates various genes’ expression, among which are inflammatory cytokines, in many tissues including the IVD. NF-κB decoy is an oligodeoxynucleotide containing the NF-κB binding site that entraps NF-κB subunits, resulting in suppression of NF-κB activity. In the present preclinical study, NF-κB decoy was injected into degenerated IVDs using the rabbit anular-puncture model. In terms of distribution, NF-κB decoy persisted in the IVDs up to at least 4 weeks after injection. The remaining amount of NF-κB decoy indicated that it fit a double-exponential-decay equation. Investigation of puncture-caused degeneration of IVDs showed that NF-κB decoy injection recovered, dose-dependently, the reduced disc height that was associated with reparative cell cloning and morphological changes, as assessed through histology. Gene expression, by quantitative real-time polymerase chain reaction (qRT-PCR), showed that NF-κB decoy attenuated inflammatory gene expression, such as that of interleukin-1 and tumor necrosis factor-α, in rabbit degenerated IVDs. NF-κB decoy also reduced the pain response as seen using the “pain sensor” nude rat xenograft-radiculopathy model. This is the first report demonstrating that NF-κB decoy suppresses the inflammatory response in degenerated IVDs and restores IVD disc height loss. Therefore, the intradiscal injection of NF-κB decoy may have the potential as an effective therapeutic strategy for discogenic pain associated with degenerated IVDs.
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- 2021
22. Various nuclear reprogramming systems using egg and oocyte materials
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Kei Miyamoto
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Nuclear Transfer Techniques ,Somatic cell ,Xenopus ,Cellular differentiation ,Histones ,Xenopus laevis ,03 medical and health sciences ,0302 clinical medicine ,Nuclear reprogramming ,Maternal factors ,medicine ,Animals ,Humans ,Egg and oocyte ,Metaphase ,030304 developmental biology ,Cell Nucleus ,0303 health sciences ,030219 obstetrics & reproductive medicine ,Germinal vesicle ,biology ,Embryogenesis ,Cellular Reprogramming ,biology.organism_classification ,Oocyte ,Sperm ,SRD Young Investigator Award 2018 ,Cell biology ,medicine.anatomical_structure ,Oocytes ,Female ,Animal Science and Zoology ,Nuclear transfer ,Reprogramming - Abstract
Maternal factors stored in eggs and oocytes are necessary for reprogramming sperm for embryonic development. This reprogramming activity of maternal factors also works towards somatic cells, including terminally differentiated cells. Several different experimental systems utilizing egg and oocyte materials have been applied to study nuclear reprogramming by maternal factors. Among these systems, the most widely used is the transfer of a somatic cell nucleus to an oocyte arrested at the metaphase II stage, leading to the production of a cloned animal. Nuclear transfer to an unfertilized oocyte thus provides a unique opportunity to examine reprogramming processes involved in acquiring totipotency. Other experimental systems are also available to study maternal reprogramming, such as nuclear transfer to Xenopus laevis oocytes at the germinal vesicle stage, treatment with extracts obtained from eggs or oocytes, and induced pluripotency with overexpressed maternal factors. Each system can be used for answering different types of scientific questions. This review describes currently available reprogramming systems using egg and oocyte materials and discusses how we can deepen our understanding of reprogramming mechanisms by taking advantage of these various experimental systems.
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- 2019
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23. Symmetrically dimethylated histone H3R2 promotes global transcription during minor zygotic genome activation in mouse pronuclei
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Yuki Hatanaka, Kei Miyamoto, Kohtaro Morita, Kazuya Matsumoto, Shunya Ihashi, and Masahide Asano
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Male ,Transcriptional Activation ,Protein-Arginine N-Methyltransferases ,Zygote ,Science ,Fluorescent Antibody Technique ,RNA polymerase II ,Methylation ,Epigenesis, Genetic ,Histones ,Mice ,Transcription (biology) ,Histone arginine methylation ,Developmental biology ,Animals ,Cell Nucleus ,Multidisciplinary ,biology ,Protein arginine methyltransferase 5 ,Gene Expression Regulation, Developmental ,Reprogramming ,Cell biology ,DNA demethylation ,Histone ,Mutation ,biology.protein ,Medicine ,Maternal to zygotic transition ,Protein Processing, Post-Translational ,Biomarkers - Abstract
Paternal genome reprogramming, such as protamine–histone exchange and global DNA demethylation, is crucial for the development of fertilised embryos. Previously, our study showed that one of histone arginine methylation, asymmetrically dimethylated histone H3R17 (H3R17me2a), is necessary for epigenetic reprogramming in the mouse paternal genome. However, roles of histone arginine methylation in reprogramming after fertilisation are still poorly understood. Here, we report that H3R2me2s promotes global transcription at the 1-cell stage, referred to as minor zygotic genome activation (ZGA). The inhibition of H3R2me2s by expressing a histone H3.3 mutant H3.3R2A prevented embryonic development from the 2-cell to 4-cell stages and significantly reduced global RNA synthesis and RNA polymerase II (Pol II) activity. Consistent with this result, the expression levels of MuERV-L as minor ZGA transcripts were decreased by forced expression of H3.3R2A. Furthermore, treatment with an inhibitor and co-injection of siRNA to PRMT5 and PRMT7 also resulted in the attenuation of transcriptional activities with reduction of H3R2me2s in the pronuclei of zygotes. Interestingly, impairment of H3K4 methylation by expression of H3.3K4M resulted in a decrease of H3R2me2s in male pronuclei. Our findings suggest that H3R2me2s together with H3K4 methylation is involved in global transcription during minor ZGA in mice., 受精卵の発生に重要な因子を発見 --ヒストンのアルギニンジメチル化が重要--. 京都大学プレスリリース. 2021-05-13.
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- 2021
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24. Single cell profiling of transcriptomic changes during in vitro maturation of human oocytes
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Tomoaki Ikeda, Eiji Kondo, Tadashi Maezawa, Hiroki Takeuchi, Megumi Fukui, Kazuya Matsumoto, Mari Yamamoto, Mikiko Nishioka, and Kei Miyamoto
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Profiling (computer programming) ,Transcriptome ,medicine.anatomical_structure ,Cell ,medicine ,Biology ,In vitro maturation ,Cell biology - Abstract
In vitro maturation of human oocytes is widely used for infertility treatment. However, the success rate of maturation varies depending on patients and molecular mechanisms underlying successful maturation remain unclear. Especially, gene expression profiles of oocytes at each maturation stage need to be revealed to understand the differential developmental abilities of oocytes. Here, we show transcriptomes of human oocytes during in vitro maturation by single cell RNA-seq analyses. Hundreds of transcripts dynamically altered their expression, and we identify molecular pathways and upstream regulators that may govern oocyte maturation. Furthermore, oocytes that are delayed in their maturation show distinct transcriptomes. Finally, we reveal genes whose transcripts are enriched in each maturation stage and that can be used for selecting an oocyte with a high developmental potential. Taken together, our work uncovers transcriptomic changes during human oocyte maturation and provides a molecular insight into the differential developmental potential of each oocyte.
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- 2021
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25. Parascolopsis akatamae, a new species of dwarf monocle bream (Perciformes: Nemipteridae) from the Indo-West Pacific, with redescription of closely related species P. eriomma
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Kei Miyamoto, Atsushi Kaneko, and Caleb D. McMahan
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Gills ,Tail ,food.ingredient ,Nemipteridae ,Zoology ,Biology ,Perciformes ,Parascolopsis eriomma ,food ,Animals ,Animalia ,Chordata ,Ecology, Evolution, Behavior and Systematics ,Taxonomy ,Actinopterygii ,Fishes ,Fish fin ,Holotype ,Lower edge ,Biodiversity ,biology.organism_classification ,Animal Science and Zoology ,Taxonomy (biology) ,Parascolopsis - Abstract
A new species of dwarf monocle bream, Parascolopsis akatamae n. sp., is described from the Indo-West Pacific. The new species is distinguished from all other species of Parascolopsis in having 16–19 gill rakers on the first arch, length of forked part of caudal fin 5.8–6.5 times in standard length, eye diameter 1.3–1.8 times in length of the longest dorsal-fin spine, and a pale yellow stripe present from lower edge of the eye to posterior edge of the preopercle. Parascolopsis eriomma (Jordan & Richardson, 1909) is morphologically very similar to the new species and the two have been confused with each other for a long time. Therefore, we redescribe P. eriomma based on the holotype and newly collected specimens. In addition, we found that patterns of biofluorescence emission for both species are clearly different. This suggests that their biofluorescence patterns may function in distinguishing each other.
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- 2020
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26. Visualization of endogenous nuclear F-actin in mouse embryos reveals abnormal actin assembly after somatic cell nuclear transfer
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Shunya Ihashi, Taiki Shindo, Junko Tomikawa, Yuko Sakamoto, Kei Miyamoto, and Tomomi Okuno
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Male ,Nuclear Transfer Techniques ,Somatic cell ,Phalloidin ,Phalloidine ,Zygote ,Green Fluorescent Proteins ,macromolecular substances ,Microfilament ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,medicine ,Animals ,Humans ,Nuclear Matrix ,Paraformaldehyde ,Molecular Biology ,Actin ,030304 developmental biology ,Cell Nucleus ,0303 health sciences ,Pronucleus ,Staining and Labeling ,Nuclear Proteins ,General Medicine ,Actins ,Cell biology ,medicine.anatomical_structure ,chemistry ,Somatic cell nuclear transfer ,Female ,Nucleus ,030217 neurology & neurosurgery - Abstract
Actin in the nucleus, referred to as nuclear actin, is involved in a variety of nuclear events. Nuclear actin is present as a globular (G-actin) and filamentous form (F-actin), and dynamic assembly/disassembly of nuclear actin profoundly affects nuclear functions. However, it is still challenging to observe endogenous nuclear F-actin. Here, we present a condition to visualize endogenous nuclear F-actin of mouse zygotes using different fixation methods. Zygotes fixed with paraformaldehyde and treated with fluorescently conjugated phalloidin show both short and long actin filaments in their pronuclei. Short nuclear actin filaments are characteristic of phalloidin staining, rather than the consequence of severing actin filaments by the fixation process, since long nuclear actin filaments probed with the nuclear actin chromobody are not disassembled into short filaments after fixation with paraformaldehyde. Furthermore, we find that nuclear actin assembly is impaired after somatic cell nuclear transfer (SCNT), suggesting abnormal nucleoskeleton structures in SCNT embryos. Taken together, our presented method for visualizing nuclear F-actin with phalloidin can be used to observe the states of nuclear actin assembly, and revealed improper reprogramming of actin nucleoskeleton structures in cloned mouse embryos.
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- 2020
27. Impairment of nuclear F-actin formation and its relevance to cellular phenotypes in Hutchinson-Gilford progeria syndrome
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Daisuke Takahashi, Nanako Machida, Yuto Takahashi, Pavel Hozák, Masahiko Harata, Kei Miyamoto, Junpei Matsushita, Tom Misteli, and Shogo Hiratsuka
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Premature aging ,congenital, hereditary, and neonatal diseases and abnormalities ,DNA Repair ,lcsh:QH426-470 ,nuclear organization ,macromolecular substances ,Biology ,Mice ,03 medical and health sciences ,Progeria ,Gene expression ,medicine ,Animals ,Humans ,lamin ,lcsh:QH573-671 ,Wnt Signaling Pathway ,Actin ,030304 developmental biology ,Cell Nucleus ,0303 health sciences ,integumentary system ,lcsh:Cytology ,030302 biochemistry & molecular biology ,Wnt signaling pathway ,Cell Biology ,Lamin Type A ,medicine.disease ,Progerin ,Actins ,Chromatin ,Cell biology ,lcsh:Genetics ,nuclear actin ,progerin ,NIH 3T3 Cells ,gene expression ,Lamin ,Research Article ,hutchinson-gilford progeria syndrome - Abstract
Hutchinson-Gilford progeria syndrome (HGPS) is a premature aging disorder caused by a mutation of lamin A, which contributes to nuclear architecture and the spatial organization of chromatin in the nucleus. The expression of a lamin A mutant, named progerin, leads to functional and structural disruption of nuclear organization. Since progerin lacks a part of the actin-binding site of lamin A, we hypothesized that nuclear actin dynamics and function are altered in HGPS cells. Nuclear F-actin is required for the organization of nuclear shape, transcriptional regulation, DNA damage repair, and activation of Wnt/β-catenin signaling. Here we show that the expression of progerin decreases nuclear F-actin and impairs F-actin-regulated transcription. When nuclear F-actin levels are increased by overexpression of nuclear-targeted actin or by using jasplakinolide, a compound that stabilizes F-actin, the irregularity of nuclear shape and defects in gene expression can be reversed. These observations provide evidence for a novel relationship between nuclear actin and the etiology of HGPS.
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- 2020
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28. Captive Birth of Tiger Shark (Galeocerdo cuvier) Reveals a Shift in Respiratory Mode during Parturition
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Hideyuki Touma, Nagisa Yano, Keiichi Sato, Kiyomi Murakumo, Shin-ichiro Oka, Makio Yanagisawa, Nozomi Hanahara, Taketeru Tomita, and Kei Miyamoto
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0106 biological sciences ,food.ingredient ,biology ,Tiger ,010604 marine biology & hydrobiology ,Zoology ,Pelagic zone ,Aquatic Science ,biology.organism_classification ,Galeocerdo ,010603 evolutionary biology ,01 natural sciences ,food ,Buccal pumping ,Breathing ,Juvenile ,Animal Science and Zoology ,Respiratory system ,human activities ,Ecology, Evolution, Behavior and Systematics ,Tiger shark - Abstract
Ram ventilation, which is characterized by the production of a respiratory water current over the gill by locomotory effort, widely occurs among pelagic sharks. However, the process by which the juvenile starts this respiratory mechanism remains largely unknown. The captive birth of a Tiger Shark (Galeocerdo cuvier) at the Okinawa Churaumi Aquarium on 23 March 2017 permitted the examination of the parturition process and behavior of newborn juveniles of this species. Sonographic examination of the pregnant female showed that, unlike adult Tiger Sharks, embryos used buccal pumping, revealing that Tiger Shark shifts its respiratory mechanism from buccal pumping to ram ventilation after birth. Our observation also showed that ram ventilation of the neonate was not continuous, and buccal pumping was also used when the neonate intermittently rested on the bottom of the tank. We speculate that this behavior is the transitional phase in the shift from buccal pumping to ram ventilation in neonates, and continuous ram ventilation may be established after the development of continuous and fast swimming abilities.
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- 2018
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29. First Record of the Grenadier Coelorinchus sheni (Actinopterygii: Gadiformes: Macrouridae) from Japan
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Naohide Nakayama, Hiroko Takaoka, and Kei Miyamoto
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Coelorinchus sheni ,Geography ,biology ,Gadiformes ,Deep sea fish ,Actinopterygii ,Zoology ,Animal Science and Zoology ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics - Published
- 2018
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30. Morphology of a Hidden Tube: Resin Injection and CT Scanning Reveal the Three-dimensional Structure of the Spiracle in the Japanese Bullhead SharkHeterodontus japonicus(Chondrichthyes; Heterodontiformes; Heterodontidae)
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Keiichi Ueda, Kazuhiro Nakaya, Taketeru Tomita, Kei Miyamoto, and Minoru Toda
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0301 basic medicine ,Histology ,Morphology (linguistics) ,Heterodontus japonicus ,Bullhead shark ,Anatomy ,Biology ,biology.organism_classification ,Chondrichthyes ,Pseudobranch ,03 medical and health sciences ,030104 developmental biology ,Spiracle ,Heterodontidae ,Tube (container) ,human activities ,Ecology, Evolution, Behavior and Systematics ,Biotechnology - Abstract
The spiracle of elasmobranchs (sharks, skates, and rays) is a gill-slit-derived tube located behind the eye. Its inner structure was well studied in the late nineteenth to early twentieth century, but its entire morphology has rarely been characterized and is poorly understood. The present study shows the three-dimensional morphology of the spiracular tube for the first time, using resin injection and CT scanning, in the Japanese bullhead shark. The spiracular tube is characterized by the presence of two caeca (dorsal and ventral spiracular caeca) on the medial wall of the spiracular tube and the presence of a pseudobranch on the anterior wall. This study provides a basis for further studies on the morphological diversity, function, and evolution of spiracles in elasmobranch fishes. Anat Rec, 2018. © 2018 Wiley Periodicals, Inc.
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- 2018
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31. Development of the Lunate-Shaped Caudal Fin in White Shark Embryos
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Shin-ichiro Oka, Minoru Toda, Keiichi Sato, Keiichi Ueda, Kei Miyamoto, and Taketeru Tomita
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0106 biological sciences ,Histology ,food.ingredient ,biology ,010604 marine biology & hydrobiology ,Ontogeny ,Fish fin ,Embryo ,Anatomy ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Carcharodon ,Carcharias ,Vertebra ,food ,medicine.anatomical_structure ,Lamnidae ,medicine ,Process (anatomy) ,Ecology, Evolution, Behavior and Systematics ,Biotechnology - Abstract
The lunate-shaped caudal fin in lamnid sharks is a morphological specialization for their thunniform mode of locomotion, but its developmental process during gestation has been poorly investigated. Observations of 21 embryonic specimens of the white shark (Carcharodon carcharias) revealed that their caudal fin morphology drastically changes from strongly heterocercal to lunate-shaped through ontogeny. This morphological change involves (1) rapid elongation of the ventral lobe, (2) increased upward curvature of the vertebra within the caudal fin, and (3) formation of keels at both lateral sides of the caudal fin base. These morphological changes are probably shared among the members of the family Lamnidae and are in contrast with the developmental process of the heterocercal tail in the lamniform Carcharias taurus, in which the caudal fin morphology is almost unchanged through the late gestation period. Anat Rec, 301:1068-1073, 2018. © 2018 Wiley Periodicals, Inc.
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- 2018
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32. Peroxiredoxin as a functional endogenous antioxidant enzyme in pronuclei of mouse zygotes
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Chika Higuchi, Kei Miyamoto, Kazuo Yamagata, Haruka Ikegami, Yoshihiko Hosoi, Kazuya Matsumoto, Kouhei Nagai, Masayuki Anzai, Kohtaro Morita, Hiromi Kato, Tasuku Mitani, Yoshitomo Taguchi, Yuki Hatanaka, and Mikiko Tokoro
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Male ,Proteomics ,0301 basic medicine ,Mouse ,Zygote ,Hydrogen peroxide (H2O2) ,Active Transport, Cell Nucleus ,Endogeny ,Fertilization in Vitro ,Peroxiredoxin 1 ,medicine.disease_cause ,Zygotes ,Epigenesis, Genetic ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Animals ,Cells, Cultured ,Cellular localization ,Cell Nucleus ,chemistry.chemical_classification ,Mice, Inbred ICR ,Reactive oxygen species ,Cumulus Cells ,Microscopy, Confocal ,030219 obstetrics & reproductive medicine ,Chemistry ,Peroxiredoxin (PRDX) ,Hydrogen Peroxide ,Peroxiredoxins ,DNA Methylation ,Oxidants ,Cell biology ,Oxidative Stress ,030104 developmental biology ,5-Methylcytosine ,Original Article ,Ectogenesis ,Female ,Animal Science and Zoology ,Reactive Oxygen Species ,Peroxiredoxin ,Reprogramming ,Oxidative stress - Abstract
Antioxidant mechanisms to adequately moderate levels of endogenous reactive oxygen species (ROS) are important for oocytes and embryos to obtain and maintain developmental competence, respectively. Immediately after fertilization, ROS levels in zygotes are elevated but the antioxidant mechanisms during the maternal-to-zygotic transition (MZT) are not well understood. First, we identified peroxiredoxin 1 (PRDX1) and PRDX2 by proteomics analysis as two of the most abundant endogenous antioxidant enzymes eliminating hydrogen peroxide (H2O2). We here report the cellular localization of hyperoxidized PRDX and its involvement in the antioxidant mechanisms of freshly fertilized oocytes. Treatment of zygotes at the pronuclear stage with H2O2 enhanced pronuclear localization of hyperoxidized PRDX in zygotes and concurrently impaired the generation of 5-hydroxymethylcytosine (5hmC) on the male genome, which is an epigenetic reprogramming event that occurs at the pronuclear stage. Thus, our results suggest that endogenous PRDX is involved in antioxidant mechanisms and epigenetic reprogramming during MZT.
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- 2018
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33. Volume of the whale shark and their mechanism of vertical feeding
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Kiyomi Murakumo, Keiichi Sato, Rui Matsumoto, Kei Miyamoto, Taketeru Tomita, Keiichi Ueda, and Minoru Toda
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0106 biological sciences ,0301 basic medicine ,biology ,Whale ,Feeding Behavior ,Whale shark ,Body density ,Body volume ,biology.organism_classification ,Models, Biological ,010603 evolutionary biology ,01 natural sciences ,Fishery ,03 medical and health sciences ,030104 developmental biology ,Volume (thermodynamics) ,Elasmobranchii ,biology.animal ,Sharks ,Animals ,Body Size ,Animal Science and Zoology - Abstract
The present study provides a noninvasive method to estimate the body volume of sharks (Elasmobranchii, Selachii) using a computational geometric model. This method allows the volume of sharks to be estimated from lateral and ventral photographs assuming an elliptical body cross-sectional geometry. A comparison of the estimated and actual body volumes of several shark species showed that the estimation error was Applying this model to captive whale sharks (Rhincodon typus) that were 8.0 and 8.8 m in total length revealed that their body volumes were 3.5 and 4.5 m3, respectively. These estimates allowed for the quantitative evaluation of our hypothesis, that the whale shark uses suctioned air for buoyancy control during vertical feeding—a behavior unique to this species among elasmobranchs. The volume estimates of the captive whale sharks, together with the density estimates from their liver proportions, revealed that the air occupying a part of oro-pharyngeal and branchial cavities can help the whale sharks to keep their body floating. This hypothesis may explain how the whale shark sometimes stays at the water surface without fin motion during vertical feeding, even though their body density is greater than that of seawater.
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- 2021
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34. A transient pool of nuclear F-actin at mitotic exit controls chromatin organization
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Kohtaro Morita, Robert Grosse, Ulrike Endesfelder, Matthias Plessner, David Virant, Christian Baarlink, Dominic Alibhai, Shinji Misu, Stefan Baumeister, Abderrahmane Kaidi, Kei Miyamoto, Alice Sherrard, Robert L. Harniman, and Eva-Maria Kleinschnitz
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Cofilin 1 ,0301 basic medicine ,FLIM ,Cell division ,Mitosis ,macromolecular substances ,Models, Biological ,Nucleus ,Histones ,Mice ,F-actin ,03 medical and health sciences ,medicine ,Animals ,Actin ,Cell Nucleus ,biology ,Chemistry ,G1 Phase ,Cell Biology ,Cell cycle ,Chromatin Assembly and Disassembly ,Actins ,Chromatin ,Cell biology ,Optogenetics ,Actin Cytoskeleton ,Blastocyst ,030104 developmental biology ,Histone ,medicine.anatomical_structure ,Mitotic exit ,Cell Nucleus Size ,NIH 3T3 Cells ,biology.protein ,Protein Multimerization - Abstract
Re-establishment of nuclear structure and chromatin organization after cell division is integral for genome regulation or development and is frequently altered during cancer progression. The mechanisms underlying chromatin expansion in daughter cells remain largely unclear. Here, we describe the transient formation of nuclear actin filaments (F-actin) during mitotic exit. These nuclear F-actin structures assemble in daughter cell nuclei and undergo dynamic reorganization to promote nuclear protrusions and volume expansion throughout early G1 of the cell cycle. Specific inhibition of this nuclear F-actin assembly impaired nuclear expansion and chromatin decondensation after mitosis and during early mouse embryonic development. Biochemical screening for mitotic nuclear F-actin interactors identified the actin-disassembling factor cofilin-1. Optogenetic regulation of cofilin-1 revealed its critical role for controlling timing, turnover and dynamics of F-actin assembly inside daughter cell nuclei. Our findings identify a cell-cycle-specific and spatiotemporally controlled form of nuclear F-actin that reorganizes the mammalian nucleus after mitosis.
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- 2017
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35. First Records of the Rare Snake Eel Ophichthus exourus (Pisces: Anguilliformes: Ophichthidae) from the Northern Hemisphere
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Fumihito Tashiro, Kei Miyamoto, and Yusuke Hibino
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0106 biological sciences ,biology ,Anguilliformes ,Nostril ,010607 zoology ,Northern Hemisphere ,Holotype ,Ophichthidae ,Anatomy ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,food.food ,medicine.anatomical_structure ,food ,medicine ,Head length ,Ophichthus ,Animal Science and Zoology ,Snout ,Ecology, Evolution, Behavior and Systematics - Abstract
An old museum specimen of the rare deep-sea species Ophichthus exourus McCosker, 1999 (Anguilliformes: Ophichthidae) (685 mm in total length) collected near Saipan and a recently collected example from Okinawa, Japan (634 mm in total length) represent the first Northern Hemisphere records of the species, previously known only from the southwestern Pacific in waters off New Caledonia and Fiji, but now believed to be widely distributed in the western Pacific Ocean. A detailed morphological observation based on the above specimens and a re-examination of the holotype resulted in a revision of some species characteristics, including the number of infraorbital pores. Ophichthus exourus is distinguished from other congeners by the following combination of characters: head 8.3–10.0% of total length; upper jaw 36.1–38.1% of head length; pectoral-fin rounded, length 19.2–24.1% of head length; rear margin of eye above or slightly behind rictus; eye diameter 44.4–61.2% of snout length; horizontal length of posterior nostril dermal flap much greater than diameter of anterior nostril tube; gill opening to dorsal-fin origin greater than twice pectoral-fin length; preopercular pores 2; predorsal and total vertebrae 20–21 and 173–177, respectively; lower-jaw teeth nearly uniserial; body without bands or spots; posteriormost portion (much shorter than head length) of anal-fin membrane indistinct darkish brown. A new standard Japanese name “Gunbai-umihebi” is proposed for the species.
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- 2017
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36. First observation of larval oarfish
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Kei Miyamoto, Shin-ichiro Oka, Ryo Nozu, and Masaru Nakamura
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0106 biological sciences ,animal structures ,Artificial fertilization ,medicine.medical_treatment ,Zoology ,Captivity ,Development ,Biology ,Regalecus ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,lcsh:Zoology ,medicine ,lcsh:QL1-991 ,030304 developmental biology ,0303 health sciences ,Larva ,Sea serpent ,Hatching ,Artificial insemination ,fungi ,biology.organism_classification ,embryonic structures ,Oarfish ,Animal Science and Zoology ,Deep-sea fish ,human activities ,Research Article - Abstract
Background Little is known about the life history of oarfish of the genus Regalecus, although it is a famous deep-sea fish and an apparent origin of sea serpent legends. We successfully performed artificial insemination using a recently dead pair of sexually mature individuals. We report for the first time development from fertilized eggs to early larvae in the Lampridiformes. Results Eggs required 18 days of development from fertilization to hatching under 20.5–22.5 °C conditions. Oarfish larvae had similar morphological features as other lampridiform larvae hatched in the ocean. Larvae typically faced downward and swam using pectoral fins; they frequently opened their mouths. This mouth-opening behavior and swimming ability were both consistent with osteological development. The larvae did not eat and died four days after hatching. Conclusions This is the first successful instance of artificial insemination and hatching in the oarfish, as well as the first reliable morphological and behavioral description of lampridiform larvae.
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- 2019
37. Active Fluctuations of the Nuclear Envelope Shape the Transcriptional Dynamics in Oocytes
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Tristan Piolot, Maria Almonacid, Philippe Mailly, Adel Al Jord, Stephany El-Hayek, Marie-Hélène Verlhac, Kei Miyamoto, Alice Othmani, Auguste Genovesio, Fanny Coulpier, Sophie Lemoine, Raphaël Voituriez, Robert Grosse, Christophe Klein, Centre interdisciplinaire de recherche en biologie (CIRB), Labex MemoLife, École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Collège de France (CdF (institution))-Ecole Superieure de Physique et de Chimie Industrielles de la Ville de Paris (ESPCI Paris), Université Paris sciences et lettres (PSL)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Institut de biologie de l'ENS Paris (IBENS), Département de Biologie - ENS Paris, Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Kindai University, University of Freiburg [Freiburg], Centre de Recherche des Cordeliers (CRC (UMR_S_1138 / U1138)), École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Université Paris Cité (UPCité), Laboratoire de Physique Théorique de la Matière Condensée (LPTMC), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Jean Perrin (LJP), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de Biologie Paris Seine (IBPS), Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), sophie, lemoine, Collège de France (CdF (institution))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Institut de biologie de l'ENS Paris (UMR 8197/1024) (IBENS), École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS Paris), Laboratory of Molecular Developmental Biology, Graduate School of Biology-Oriented Science and Technology, Kinki University, Régulations et communications cellulaires (RCC), Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Diderot - Paris 7 (UPD7)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Université Pierre et Marie Curie - Paris 6 (UPMC), Virology Laboratory, Hôpital Rothchild, Physiopathologie des Maladies du Système Nerveux Central, Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Sorbonne Université (SU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Collège de France (CdF)-PSL Research University (PSL), École normale supérieure - Paris (ENS Paris)-École normale supérieure - Paris (ENS Paris)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Diderot - Paris 7 (UPD7)-Assistance publique - Hôpitaux de Paris (AP-HP) (APHP)-Université Pierre et Marie Curie - Paris 6 (UPMC), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Ecole Superieure de Physique et de Chimie Industrielles de la Ville de Paris (ESPCI Paris), Université Paris sciences et lettres (PSL)-Collège de France (CdF (institution))-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Collège de France (CdF (institution))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-École normale supérieure - Paris (ENS Paris), and Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Male ,Cytoplasm ,Nuclear Envelope ,[SDV]Life Sciences [q-bio] ,Mutant ,Mice, Transgenic ,nuclear dynamics ,Biology ,General Biochemistry, Genetics and Molecular Biology ,mechano-transduction ,Transcriptome ,03 medical and health sciences ,F-actin ,0302 clinical medicine ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,Gene expression ,medicine ,Animals ,Molecular Biology ,Actin ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,[PHYS]Physics [physics] ,Cell Nucleus ,0303 health sciences ,Cell Biology ,mouse oocyte ,Oocyte ,bio-physics ,Actins ,Chromatin ,Cell biology ,Actin Cytoskeleton ,Meiosis ,medicine.anatomical_structure ,Oocytes ,[SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,Female ,Nucleus ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
International audience; Nucleus position in cells can act as a developmental cue. Mammalian oocytes position their nucleus centrally using an F-actin-mediated pressure gradient. The biological significance of nucleus centering in mammalian oocytes being unknown, we sought to assess the F-actin pressure gradient effect on the nucleus. We addressed this using a dedicated computational 3D imaging approach, biophysical analyses, and a nucleus repositioning assay in mouse oocytes mutant for cytoplasmic F-actin. We found that the cytoplasmic activity, in charge of nucleus centering, shaped the nucleus while promoting nuclear envelope fluctuations and chromatin motion. Off-centered nuclei in F-actin mutant oocytes were misshaped with immobile chromatin and modulated gene expression. Restoration of F-actin in mutant oocytes rescued nucleus architecture fully and gene expression partially. Thus, the F-actin-mediated pressure gradient also modulates nucleus dynamics in oocytes. Moreover, this study supports a mechano-transduction model whereby cytoplasmic microfilaments could modulate oocyte transcriptome, essential for subsequent embryo development.
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- 2019
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38. Perturbation of maternal PIASy abundance disrupts zygotic genome activation and embryonic development via SUMOylation pathway
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Kei Miyamoto, Chika Higuchi, Seung-Wook Shin, Mari Yamamoto, and Kazuya Matsumoto
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QH301-705.5 ,Science ,SUMO protein ,maternal-to-zygotic transition ,Biology ,piasy ,General Biochemistry, Genetics and Molecular Biology ,Chromosome segregation ,03 medical and health sciences ,Histone H3 ,0302 clinical medicine ,Transcription (biology) ,Biology (General) ,Gene ,030304 developmental biology ,zygotic genome activation ,0303 health sciences ,Zygote ,sumoylation ,Sumoylation Pathway ,Cell biology ,Maternal to zygotic transition ,ubiquitin-proteasome system ,General Agricultural and Biological Sciences ,030217 neurology & neurosurgery ,Research Article - Abstract
During the maternal-to-zygotic transition (MZT), mRNAs and proteins stored in oocytes are degraded and zygotic genes are activated. We have previously shown that the ubiquitin-proteasome system (UPS)-mediated degradation of maternal proteins plays a role in the onset of zygotic transcription. However, it is still unclear which maternal proteins should be degraded for zygotic genome activation and ensuring subsequent embryonic development. In this study, we screen for these maternal factors that are degraded via the UPS. We thus identified a maternal protein PIASy (protein inhibitor of activated STATy), which is an E3 SUMO ligase. The overexpression of PIASy in fertilized embryos causes developmental arrest at the two-cell stage due to severe abnormal chromosome segregation and impaired zygotic transcription. We find that this developmental role of PIASy is related to its SUMOylation activity. Moreover, PIASy overexpression leads to increased trimethylation of histone H3 lysine 9 (H3K9me3) in two-cell nuclei and enhanced translocation of H3K9me3 methyltransferase to the pronucleus. Hence, PIASy is a maternal factor that is degraded after fertilization and may be important for the proper induction of zygotic genome activation and embryonic development., Summary: Maternal protein degradation is one developmental event leading to acquiring totipotency. PIASy is identified as a maternal protein that is degraded for accomplishing zygotic transcription and development.
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- 2019
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39. Dental ontogeny of a white shark embryo
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Keiichi Sato, Minoru Toda, Kei Miyamoto, Taketeru Tomita, Akira Kawaguchi, Shin-ichiro Oka, and Ryo Nozu
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0106 biological sciences ,0301 basic medicine ,food.ingredient ,biology ,Dentition ,Ontogeny ,Heterodont ,Embryo ,Anatomy ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Carcharodon ,stomatognathic diseases ,03 medical and health sciences ,030104 developmental biology ,food ,stomatognathic system ,Oophagy ,Lamnidae ,Lamniformes ,Animal Science and Zoology ,Developmental Biology - Abstract
Unlike most viviparous vertebrates, lamniform sharks develop functional teeth during early gestation. This feature is considered to be related to their unique reproductive mode where the embryo grows to a large size via feeding on nutritive eggs in utero. However, the developmental process of embryonic teeth is largely uninvestigated. We conducted X-ray microcomputed tomography to observe the dentitions of early-, mid-, and full-term embryos of the white shark Carcharodon carcharias (Lamniformes, Lamnidae). These data reveal the ontogenetic change of embryonic dentition of the species for the first time. Dentition of the early-term embryos (∼45 cm precaudal length, PCL) is distinguished from adult dentition by 1) the presence of microscopic teeth in the distalmost region of the paratoquadrate, 2) a fang-like crown morphology, and 3) a lack of basal concavity of the tooth root. The “intermediate tooth” of early-term embryos is almost the same size as the adjacent teeth, suggesting that lamnoid-type heterodonty (lamnoid tooth pattern) has not yet been established. We also discovered that mid-term embryos (∼80 cm PCL) lack functional dentition. Previous studies have shown that the maternal supply of nutritive eggs in lamnoid sharks ceases during mid- to late-gestation. Thus, discontinuation of functional tooth development is likely associated with the completion of the oophagous (egg-eating) phase. Replacement teeth in mid-term embryos include both embryonic and adult-type teeth, suggesting that the embryo to adult transition in dental morphology occurs during this period. J. Morphol. 278:215–227, 2017. © 2016 Wiley Periodicals,Inc.
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- 2016
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40. Eye retraction in the giant guitarfish, Rhynchobatus djiddensis (Elasmobranchii: Batoidea): a novel mechanism for eye protection in batoid fishes
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Keiichi Sato, Shin-ichiro Oka, Taketeru Tomita, Minoru Toda, Haruka Kamisako, Kiyomi Murakumo, and Kei Miyamoto
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0106 biological sciences ,genetic structures ,Rhynchobatus djiddensis ,macromolecular substances ,Eye protection ,Eye ,010603 evolutionary biology ,01 natural sciences ,Elasmobranchii ,biology.animal ,medicine ,Animals ,Skates, Fish ,Ocular Physiological Phenomena ,biology ,010604 marine biology & hydrobiology ,digestive, oral, and skin physiology ,Vertebrate ,Anatomy ,biology.organism_classification ,eye diseases ,Oculomotor Muscle ,medicine.anatomical_structure ,Oculomotor Muscles ,Guitarfish ,Neurocranium ,Batoidea ,Animal Science and Zoology ,sense organs - Abstract
Eye retraction behavior has evolved independently in some vertebrate linages such as mudskippers (fish), frogs and salamanders (amphibians), and cetaceans (mammals). In this paper, we report the eye retraction behavior of the giant guitarfish (Rhynchobatus djiddensis) for the first time, and discuss its mechanism and function. The eye retraction distance was nearly the same as the diameter of the eyeball itself, indicating that eye retraction in the giant guitarfish is probably one of the largest among vertebrates. Eye retraction is achieved by unique arrangement of the eye muscle: one of the anterior eye muscles (the obliquus inferior) is directed ventrally from the eyeball and attaches to the ventral surface of the neurocranium. Due to such muscle arrangement, the obliquus inferior can pull the eyeball ventrally. This mechanism was also confirmed by electrical stimulation of the obliquus inferior. The eye retraction ability of the giant guitarfish likely represents a novel eye protection behavior of elasmobranch fishes.
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- 2016
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41. Zygotic Nuclear F-Actin Safeguards Embryonic Development
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Kei Miyamoto, Mari Yamamoto, Yu Hatano, Yuko Sakamoto, Wayne Yang Li, Taiki Shindo, Kohtaro Morita, Atsushi Takasu, Zenki Ikeda, Matthias Plessner, Kazuo Yamagata, Robert Grosse, Kazuya Matsumoto, and Tomomi Okuno
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0301 basic medicine ,zygote ,Light ,Cell Survival ,Embryonic Development ,Mitosis ,DNA repair ,macromolecular substances ,Biology ,Filamentous actin ,General Biochemistry, Genetics and Molecular Biology ,Polymerization ,03 medical and health sciences ,Imaging, Three-Dimensional ,0302 clinical medicine ,Animals ,lcsh:QH301-705.5 ,Actin ,Cell Nucleus ,Mice, Inbred ICR ,Zygote ,Pronucleus ,Totipotent ,Gene Expression Regulation, Developmental ,Cell Cycle Checkpoints ,Cofilin ,Embryo, Mammalian ,Actins ,Up-Regulation ,Chromatin ,Cell biology ,Actin Cytoskeleton ,030104 developmental biology ,Actin Depolymerizing Factors ,lcsh:Biology (General) ,nuclear actin ,Checkpoint Kinase 1 ,chromatin ,pronucleus ,transcription ,030217 neurology & neurosurgery ,Nuclear localization sequence ,DNA Damage - Abstract
Summary: After fertilization, sperm and oocyte nuclei are rapidly remodeled to form swollen pronuclei (PN) in mammalian zygotes, and the proper formation and function of PN are key to producing totipotent zygotes. However, how mature PN are formed has been unclear. We find that filamentous actin (F-actin) assembles in the PN of mouse zygotes and is required for fully functional PN. The perturbation of nuclear actin dynamics in zygotes results in the misregulation of genes related to genome integrity and abnormal development of mouse embryos. We show that nuclear F-actin ensures DNA damage repair, thus preventing the activation of a zygotic checkpoint. Furthermore, optogenetic control of cofilin nuclear localization reveals the dynamically regulated F-actin nucleoskeleton in zygotes, and its timely disassembly is needed for developmental progression. Nuclear F-actin is a hallmark of totipotent zygotic PN, and the temporal regulation of its polymerized state is necessary for normal embryonic development.
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- 2020
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42. The Actin-Family Protein Arp4 Is a Novel Suppressor for the Formation and Functions of Nuclear F-Actin
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Masahiko Harata, Koji Yamamoto, Shota Yamazaki, Yuya Ueno, Christian Gerhold, Kei Miyamoto, and Robert Grosse
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nucleoskeleton ,DNA Repair ,Transcription, Genetic ,Chromosomal Proteins, Non-Histone ,Xenopus ,Protein subunit ,macromolecular substances ,Article ,Mice ,Gene expression ,medicine ,Animals ,DNA Breaks, Double-Stranded ,Wnt Signaling Pathway ,lcsh:QH301-705.5 ,Actin ,Cell Nucleus ,epigenetics ,biology ,Chemistry ,General Medicine ,biology.organism_classification ,Actins ,nuclear architecture ,Chromatin ,Cell biology ,DNA-Binding Proteins ,Crosstalk (biology) ,medicine.anatomical_structure ,Gene Expression Regulation ,lcsh:Biology (General) ,Cytoplasm ,nuclear actin ,NIH 3T3 Cells ,Oocytes ,actin-related protein ,Nucleus - Abstract
The crosstalk between actin and actin-related proteins (Arps), namely Arp2 and Arp3, plays a central role in facilitating actin polymerization in the cytoplasm and also in the nucleus. Nuclear F-actin is required for transcriptional regulation, double-strand break repair, and nuclear organization. The formation of nuclear F-actin is highly dynamic, suggesting the involvement of positive and negative regulators for nuclear actin polymerization. While actin assembly factors for nuclear F-actin have been recently described, information about inhibitory factors is still limited. The actin-related protein Arp4 which is predominantly localized in the nucleus, has been previously identified as an integral subunit of multiple chromatin modulation complexes, where it forms a heterodimer with monomeric actin. Therefore, we tested whether Arp4 functions as a suppressor of nuclear F-actin formation. The knockdown of Arp4 (Arp4 KD) led to an increase in nuclear F-actin formation in NIH3T3 cells, and purified Arp4 potently inhibited F-actin formation in mouse nuclei transplanted into Xenopus laevis oocytes. Consistently, Arp4 KD facilitated F-actin-inducible gene expression (e.g., OCT4) and DNA damage repair. Our results suggest that Arp4 has a critical role in the formation and functions of nuclear F-actin.
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- 2020
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43. Combinational Treatment of Trichostatin A and Vitamin C Improves the Efficiency of Cloning Mice by Somatic Cell Nuclear Transfer
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Kei Miyamoto, Masayuki Anzai, Rika Azuma, Mami Oikawa, Masayasu Yamada, and Apollo - University of Cambridge Repository
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0301 basic medicine ,Male ,Somatic Cell Nuclear Transfer ,Nuclear Transfer Techniques ,Mouse ,medicine.drug_class ,General Chemical Engineering ,Cloning, Organism ,Histone H3 Lysine 9 Trimethylation ,Embryonic Development ,Ascorbic Acid ,Biology ,Deionized Bovine Serum Albumin ,Hydroxamic Acids ,General Biochemistry, Genetics and Molecular Biology ,Virus ,03 medical and health sciences ,Mice ,Issue 134 ,Pregnancy ,Histone Deacetylase Inhibitor ,medicine ,Animals ,Vitamin C ,Bovine serum albumin ,Cloning ,General Immunology and Microbiology ,General Neuroscience ,Histone deacetylase inhibitor ,This Month in JoVE ,Ascorbic acid ,Hemagglutinating Virus of Japan Envelope ,Cell biology ,Genetically modified organism ,030104 developmental biology ,Trichostatin A ,biology.protein ,Somatic cell nuclear transfer ,Female ,medicine.drug - Abstract
Somatic cell nuclear transfer (SCNT) provides a unique opportunity to directly produce a cloned animal from a donor cell, and it requires the use of skillful techniques. Additionally, the efficiencies of cloning have remained low since the successful production of cloned animals, especially mice. There have been many attempts to improve the cloning efficiency, and trichostatin A (TSA), a histone deacetylase inhibitor, has been widely used to enhance the efficiency of cloning. Here, we report a dramatically improved cloning method in mice. This somatic cell nuclear transfer method involves usage of Hemagglutinating virus of Japan Envelope (HVJ-E), which enables easy manipulation. Moreover, the treatment using two small molecules, TSA and vitamin C (VC), with deionized bovine serum albumin (dBSA), is highly effective for embryonic development. This approach requires neither additional injection nor genetic manipulation, and thus presents a simple, suitable method for practical use. This method could become a technically feasible approach for researchers to produce genetically modified animals from cultured cells. Furthermore, it might be a useful way for the rescue of endangered animals via cloning.
- Published
- 2018
44. Analysis of nuclear actin in human progeria cells
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Robert Grosse, Nanako Machida, Yuto Takahashi, Kei Miyamoto, Tom Misteli, and Masahiko Harata
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Progeria ,Chemistry ,medicine ,medicine.disease ,General Biochemistry, Genetics and Molecular Biology ,Actin ,Cell biology - Published
- 2019
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45. Live-bearing without placenta: Physical estimation indicates the high oxygen-supplying ability of white shark uterus to the embryo
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Shohei Matsuzaki, Keiichi Sato, Masaru Nakamura, Taketeru Tomita, Ryo Nozu, and Kei Miyamoto
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0301 basic medicine ,Gill ,Embryo, Nonmammalian ,food.ingredient ,Uterus ,lcsh:Medicine ,Embryonic Development ,Biology ,Article ,03 medical and health sciences ,food ,Placenta ,Respiration ,medicine ,Animals ,lcsh:Science ,Multidisciplinary ,lcsh:R ,Embryogenesis ,Embryo ,Anatomy ,Carcharodon ,Oxygen ,White (mutation) ,030104 developmental biology ,medicine.anatomical_structure ,Sharks ,lcsh:Q ,Female ,human activities - Abstract
One of the mysteries of shark aplacental viviparity is the ability of the embryos to acquire oxygen from their mothers without a placental connection. It has been assumed that embryonic respiration in aplacental viviparous shark depends on oxygen from the uterine wall, although this hypothesis has not been confirmed quantitatively. Morphological observations of the uterine wall of white shark (Carcharodon carcharias) provided the first quantitative evidence to support the ability of the uterus to supply ample oxygen to the embryo of viviparous elasmobranchs. The uterine surface of the white shark is characterized by (1) uterine lamellae that develop perpendicular to the uterine wall, (2) uterine lamellae folded in an accordion-like fashion, and (3) numerous micro-ridges on the lamellar surface. These modifications result in increased uterine surface are to up to 56 folds compared to the uterus with a smooth surface. Histological observations revealed that the diffusion barrier of the uterine wall is approximately 12 µm. By using these values, the oxygen-diffusion capacity of 1 cm2 of the uterine wall of white shark was estimated to be 63.6 nmol·min−1·torr−1. This value is 250–400 times greater than that observed in other aplacental viviparous sharks (Squalus spp.) and is comparable with that of fish gills.
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- 2017
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46. Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes
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Kei Miyamoto, George E. Allen, Manolis Kellis, John B. Gurdon, Khoi T. Nguyen, Tomoki Otani, Frederick J. Livesey, Jerome Jullien, Dinesh Kumar, Charles R. Bradshaw, Massachusetts Institute of Technology. Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology. Department of Biological Engineering, Nguyen, Khoi Thien, Kumar, Dinesh, Kellis, Manolis, Jullien, Jerome [0000-0002-7868-0021], Bradshaw, Charles [0000-0002-3528-458X], Livesey, Frederick [0000-0001-6128-3372], Gurdon, John [0000-0002-5621-3799], and Apollo - University of Cambridge Repository
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0301 basic medicine ,Transcriptional Activation ,nuclear transfer ,Transcription, Genetic ,Somatic cell ,Xenopus ,Transposases ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Article ,03 medical and health sciences ,Mice ,Xenopus laevis ,Animals ,Promoter Regions, Genetic ,lcsh:QH301-705.5 ,Transcription factor ,Gene ,Transcription start ,reprogramming ,Sequence Analysis, DNA ,Fibroblasts ,biology.organism_classification ,Cellular Reprogramming ,Chromatin ,Cell biology ,Transplantation ,open chromatin ,030104 developmental biology ,lcsh:Biology (General) ,Oocytes ,sense organs ,Transcription Initiation Site ,Reprogramming ,Transcription Factors - Abstract
Summary Oocytes have a remarkable ability to reactivate silenced genes in somatic cells. However, it is not clear how the chromatin architecture of somatic cells affects this transcriptional reprogramming. Here, we investigated the relationship between the chromatin opening and transcriptional activation. We reveal changes in chromatin accessibility and their relevance to transcriptional reprogramming after transplantation of somatic nuclei into Xenopus oocytes. Genes that are silenced, but have pre-existing open transcription start sites in donor cells, are prone to be activated after nuclear transfer, suggesting that the chromatin signature of somatic nuclei influences transcriptional reprogramming. There are also activated genes associated with new open chromatin sites, and transcription factors in oocytes play an important role in transcriptional reprogramming from such genes. Finally, we show that genes resistant to reprogramming are associated with closed chromatin configurations. We conclude that chromatin accessibility is a central factor for successful transcriptional reprogramming in oocytes., Graphical Abstract, Highlights • ATAC-seq reveals chromatin accessibility changes during reprogramming in oocytes • Genes with open promoters are preferentially activated during reprogramming • Transcription factors play a role in transcriptional reprogramming in oocytes • Closed chromatin is associated with reprogramming-resistant genes, Miyamoto et al. show genome-wide changes in chromatin accessibility during transcriptional reprogramming in oocytes using the frog nuclear transfer system. They demonstrate that donor cell chromatin states affect transcriptional reprogramming and changes in open chromatin during reprogramming are associated with specific transcription factors.
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- 2017
47. A STUDY ON LOCATION CHARACTERISTICS OF THE VEGETATION LANDSCAPES IN URBAN ARERA
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Takahiro Tanaka, Keiichi Ohno, Kei Miyamoto, Yuichi Sato, and Satoru Sadohara
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geography ,Environmental Engineering ,geography.geographical_feature_category ,Geographic information system ,business.industry ,Urban climate ,medicine ,Physical geography ,medicine.symptom ,Urban ecosystem ,Urban area ,Vegetation (pathology) ,business - Published
- 2014
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48. Maternal Factors Involved in Nuclear Reprogramming by Eggs and Oocytes
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Kei Miyamoto
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Genetics ,Somatic cell ,Endogeny ,Embryo ,Cell Biology ,Biology ,Oocyte ,Embryonic stem cell ,Cell biology ,medicine.anatomical_structure ,Reproductive Medicine ,embryonic structures ,medicine ,Incubation ,Nucleus ,Reprogramming - Abstract
When a somatic cell nucleus is transplanted into an egg or an oocyte, the transplanted nucleus can be reprogrammed to support early embryonic develop- ment so that the reconstructed embryo gives rise to a cloned animal. Nuclear reprogramming of somatic nuclei is induced by maternal components stored in eggs and oocytes. These endogenous reprogramming factors and mechanisms have been explored for decades in mam- mals and amphibia. There are several ways of investi- gating reprogramming mechanisms, including nuclear transfer to eggs/oocytes and incubation in egg/oocyte extracts. In this review I describe the type of reprogram- ming events induced in each system and what factors in eggs and oocytes are responsible for these. Based on our current knowledge, I propose a model for the early phase of nuclear reprogramming in eggs and oocytes.
- Published
- 2013
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49. Alterations in axial curvature of the cervical spine with a combination of rotation and extension in the conventional anterior cervical approach
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Kei Miyamoto, Katsuji Shimizu, Nobuki Iinuma, Akira Hioki, Takatoshi Ohno, and Hiroyuki Tanahashi
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Adult ,Male ,musculoskeletal diseases ,Rotation ,Decompression ,Vertebral artery ,medicine.medical_treatment ,Posture ,Perforation (oil well) ,Ossification of Posterior Longitudinal Ligament ,Curvature ,Spinal Curvatures ,Imaging, Three-Dimensional ,medicine.artery ,medicine ,Humans ,Orthopedics and Sports Medicine ,Corpectomy ,Vertebral Artery ,Aged ,Aged, 80 and over ,Spinal Neoplasms ,business.industry ,Occipital bone ,Anatomy ,Middle Aged ,Decompression, Surgical ,Biomechanical Phenomena ,medicine.anatomical_structure ,Occipital Bone ,Cervical Vertebrae ,Original Article ,Female ,Surgery ,Spondylosis ,sense organs ,Tomography, X-Ray Computed ,business ,Intervertebral Disc Displacement ,Cervical vertebrae - Abstract
Alterations of three-dimensional cervical curvature in conventional anterior cervical approach position are not well understood. The purpose of this study was to evaluate alignment changes of the cervical spine in the position. In addition, simulated corpectomy was evaluated with regard to sufficiency of decompression and perforation of the vertebral artery canal.Fifty patients with cervical spinal disorders participated. Cervical CT scanning was performed in the neutral and supine position (N-position) and in extension and right rotation simulating the conventional anterior approach position (ER-position). Rotation at each vertebral level was measured. With simulation of anterior corpectomy in a vertical direction with a width of 17 mm, decompression width at the posterior wall of the vertebrae and the distance from each foramen of the vertebral artery (VA) were measured.In the ER-position, the cervical spine was rotated rightward by 37.2° ± 6.2° between the occipital bone and C7. While the cervical spine was mainly rotated at C1/2, the subaxial vertebrae were also rotated by several degrees. Due to the subaxial rotation, the simulated corpectomy resulted in smaller decompression width on the left side and came closer to the VA canal on the right side.In the ER-position, the degrees of right rotation of subaxial vertebrae were small but significant. Therefore, preoperative understanding of this alteration of cervical alignment is essential for performing safe and sufficient anterior corpectomy of the cervical spine.
- Published
- 2013
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50. Lumbar Disc Herniation with End-Plate Fracture and Secondary Ossification Mimicking an Epidural Tumor: A Case Report
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Kei Miyamoto, Koun Yamauchi, Katsuji Shimizu, Kazunari Fushimi, and Akira Hioki
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medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Ossification ,Capsule ,Magnetic resonance imaging ,Anatomy ,medicine.disease ,Epidural space ,medicine.anatomical_structure ,medicine ,Radiology ,Lumbar disc herniation ,Differential diagnosis ,medicine.symptom ,business ,Pathological ,Calcification - Abstract
We report a unique case of lumbar disc herniation, in particular, with end-plate and surrounded by extensive ossification, mimicking a tumor with calcification. A 69-year-old female suffered from right buttock and leg pain. Computed tomography (CT) showed an intracanalar mass with calcification or ossification, which most likely originated from the vertebral body at the L1/2 level epidural space. On a T1-weighted gadolinium magnetic resonance image, the capsule of the mass was enhanced and not only the content of the mass but also that of the L2 vertebral body were partially and slightly enhanced. The final pathological diagnosis was disc herniation with end-plate fracture and secondary ossification. A combination of these pathological conditions as accompanied by both end-plate fractures and extensive secondary ossifications has not been previously reported. This rare pathological condition needs to be recognized as a differential diagnosis.
- Published
- 2013
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