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Funding: This work was funded by the Office of Naval Research under award: N000141912464. 1. The assessment of behavioural disturbance in cetacean species (e.g., resulting from exposure to anthropogenic sources such as military sonar, seismic surveys, or pile driving) is important for effective conservation and management. Disturbance effects can be informed by Behavioural Response Studies (BRSs), involving either controlled exposure experiments (CEEs) where noise exposure conditions are presented deliberately to meet experimental objectives or in opportunistic contexts where ongoing activities are monitored in a strategic manner. In either context, animal-borne sensors or in-situ observations can provide information on individual exposure and disturbance responses. 2. The past 15 years of research have greatly expanded our understanding of behavioural responses to noise, including hundreds of experiments in nearly a dozen cetacean species. Many papers note limited sample sizes, required knowledge of baseline behaviour prior to exposure and the importance of contextual factors modulating behavioural responses, all of which in combination can lead to sampling biases, even for well-designed research programs. 3. It is critical to understand these biases to robustly identify responses. This ensures outcomes of BRSs help inform predictions of how anthropogenic disturbance impacts individuals and populations. Our approach leverages concepts from the animal behaviour literature focused on helping to avoid sampling bias by considering what shapes an animal's response. These factors include social, experience, genetic and natural changes in responsiveness. 4. We developed and applied a modified version of this framework to synthesize current knowledge on cetacean response in the context of effects observed across marine and terrestrial taxa. This new 'Sampling, Exposure, Receptor' framework (SERF) identifies 43 modulating factors, highlights potential biases, and assesses how these vary across selected focal species. 5. In contrast to studies that identified variation in 'Exposure' factors as a key concern, our analysis indicated that factors relating to 'Sampling' (e.g., deploying tags on less evasive individuals, which biases selection of subjects), and "Receptor" (e.g., health status or coping style) have the greatest potential for weakening the desired broad representativeness of BRSs. Our assessment also highlights how potential biases could be addressed with existing datasets or future developments. Publisher PDF

Sperm whales (Physeter macrocephalus) are a cosmopolitan species but are only found in ice-free regions of the ocean. It is unknown how their distribution might change in regions undergoing rapid loss of sea ice and ocean warming like Baffin Bay in the eastern Canadian Arctic. In 2014 and 2018, sperm whales were sighted near Eclipse Sound, Baffin Bay: the first recorded uses of this region by sperm whales. In this study, we investigate the spatiotemporal distribution of sperm whales near Eclipse Sound using visual and acoustic data. We combine several published open-source, data sets to create a map of historical sperm whale presence in the region. We use passive acoustic data from two recording sites between 2015 and 2019 to investigate more recent presence in the region. We also analyze regional trends in sea ice concentration (SIC) dating back to 1901 and relate acoustic presence of sperm whales to the mean SIC near the recording sites. We found no records of sperm whale sightings near Eclipse Sound outside of the 2014/2018 observations. Our acoustic data told a different story, with sperm whales recorded yearly from 2015 to 2019 with presence in the late summer and fall months. Sperm whale acoustic presence increased over the 5-year study duration and was closely related to the minimum SIC each year. Sperm whales, like other cetaceans, are ecosystem sentinels, or indicators of ecosystem change. Increasing number of days with sperm whale presence in the Eclipse Sound region could indicate range expansion of sperm whales as a result of changes in sea ice. Monitoring climate change-induced range expansion in this region is important to understand how increasing presence of a top-predator might impact the Arctic food web.

Body size and feeding morphology influence how animals partition themselves within communities. We tested the relationships among sex, body size, skull morphology and foraging in sympatric otariids (eared seals) from the eastern North Pacific Ocean, the most diverse otariid community in the world. We recorded skull measurements and stable carbon ( δ 13 C) and nitrogen ( δ 15 N) isotope values (proxies for foraging) from museum specimens in four sympatric species: California sea lions ( Zalophus californianus ), Steller sea lions ( Eumetopias jubatus ), northern fur seals ( Callorhinus ursinus ) and Guadalupe fur seals ( Arctocephalus townsendi ). Species and sexes had statistical differences in size, skull morphology and foraging significantly affecting the δ 13 C values. Sea lions had higher δ 13 C values than fur seals, and males of all species had higher values than females. The δ 15 N values were correlated with species and feeding morphology; individuals with stronger bite forces had higher δ 15 N values. We also found a significant community-wide correlation between skull length (indicator of body length), and foraging, with larger individuals having nearshore habitat preferences, and consuming higher trophic level prey than smaller individuals. Still, there was no consistent association between these traits at the intraspecific level, indicating that other factors might account for foraging variability.

Oxygen plays a pivotal role in the metabolism and activities of mammals. However, oxygen is restricted in some environments—subterranean burrow systems or habitats at high altitude or deep in the ocean—and this could exert hypoxic stresses such as oxidative damage on organisms living in these environments. In order to cope with these stresses, organisms have evolved specific strategies to adapt to hypoxia, including changes in physiology, gene expression regulation, and genetic mutations. Here, we review how mammals have adapted to the three high‐altitude plateaus of the world, the limited oxygen dissolved in deep water habitats, and underground tunnels, with the aim of better understanding the adaptation of mammals to hypoxia., Soil profile and a blind mole living underground.

Research on immune response in polar fauna is gaining great importance due to different scenarios of environmental change. Total leukocyte counts in blood smears are one of the most widespread practices and provide useful information about the health status of individuals. However, there is no methodological agreement for these analyses. Total leukocyte counts can be performed at ×400 magnification in optical microscopy using 10,000 erythrocytes for standardizing. However, counting such number of erythrocytes is costly and time-consuming. Here, we describe a new technique to simplify leukocyte counts in blood smears from Antarctic wildlife based on the number of microscope fields instead of the number of erythrocytes which reduces considerably the time spent. We have counted total leukocytes using both methods in the three penguin species of the genus Pygoscelis—Adélie (P. adeliae), gentoo (P. papua), and chinstrap penguin (P. antarcticus)—and four Antarctic mammal species: crabeater seal (Lobodon carcinophaga), leopard seal (Hydrurga leptonyx), weddell seal (Leptonychotes weddellii), and southern elephant seal (Mirounga leonina) for validation. Our results show a high correlation between the total leukocyte counts using 10,000 erythrocytes or 10 microscope fields for standardizing. These results show the reliability of the latter method for counting the total number of leukocytes in different species of birds and mammals saving time and effort., The study was funded by the Spanish Ministry of Economy and Competitiveness through projects CTM2011-24427, CTM2015-64720, and PID2019-108597 and by the Dirección Nacional del Antártico, Instituto Antártico Argentino (PICTA 2010-01).

Microplastics occur in marine habitats worldwide. They have been reported from locations as remote and pristine as the Arctic and Antarctic, beyond organisms of several trophic levels. Microplastic ingestion in animals can either happens intentionally or by accident. The microplastic size plays an important role in ingestion as it may correspond to the preferred prey size of predator species. Besides, microplastic transfer and accumulation within the trophic food web are considered as a main factor of plastic exposure in apex species like marine mammals. This study investigated samples of faeces and gastrointestinal tracts of 21 cetaceans stranded along the German North Sea and Baltic Sea coasts between 2016 and 2021. This includes the big stranding event of bachelor sperm whales in 2016 (N = 13) in the North Sea, but also other toothed whale species as well as four baleen whales. All samples were processed after an established cleaning protocol using a conventional washing machine, followed by Nile Red staining and fluorescence microscopy. The subsequent µFTIR spectroscopy of suspected anthropogenic particles then identified microplastic polymer types. A variety of polymer types of the isolated particles could be revealed (e.g., Polyester, Polyolefine, Polyamide, and Polyethylene). Also see: https://micro2022.sciencesconf.org/427077/document, In MICRO 2022, Online Atlas Edition: Plastic Pollution from MACRO to nano

Per- and polyfluoroalkyl substances (PFASs) are bioaccumulative and associated with adverse effects in both wildlife and humans. The occurrence of 33 PFASs was assessed in the plasma, liver, blubber, and brain of 18 Baikal seals (Phoca sibirica) (16 pups and 2 adult females) from Lake Baikal, Russia (in 2011). Of the 33 congeners analysed for: perfluorooctanosulfonic acid (PFOS), 7 long chain perfluoroalkyl carboxylic acids (C8–C14 PFCAs) and 1 branched PFCA (perfluoro-3,7-dimethyloctanoic acid; P37DMOA) were most frequently detected. The PFASs in plasma and liver with the highest median concentrations were legacy congeners: perfluoroundecanoic acid (PFUnA; plasma: 11.2 ng/g w.w.; liver: 7.36 ng/g w.w.), PFOS (plasma: 8.67 ng/g w.w.; liver: 9.86 ng/g w.w.), perfluorodecanoic acid (PFDA; plasma: 5.13 ng/g w.w.; liver: 6.69 ng/g w.w.), perfluorononanoic acid (PFNA; plasma: 4.65 ng/g w.w.; liver: 5.83 ng/g w.w.) and perfluorotridecanoic acid (PFTriDA; plasma: 4.29 ng/g w.w.; liver: 2.55 ng/g w.w.). PFASs were detected in the brain of Baikal seals, indicating that PFASs cross through the blood–brain barrier. In blubber, the majority of PFASs were detected in low abundance and concentrations. In contrast to legacy PFASs, novel congeners (e.g., Gen X) were either detected infrequently or not found in Baikal seals. The worldwide occurrence of PFASs in pinnipeds was compared and lower median concentrations of PFOS were observed in Baikal seals relative to other pinnipeds. Conversely, similar concentrations of long chain PFCAs were found in Baikal seals compared to other pinnipeds. Furthermore, human exposure was assessed by estimating weekly intakes (EWI) of PFASs through Baikal seal consumption. Although PFASs concentrations were comparatively low relative to other pinnipeds, consumption of Baikal seal could exceed current regulatory guidelines.

The common harbor porpoise is a widely-distributed marine mammal with three known subspecies, including P. phocoena phocoena, with a clearly distinct and critically endangered (CR) subpopulation from the Baltic Sea (Baltic Proper). As part of an assessment of the condition and health threats of these mammals, it is important to conduct parasitological monitoring. The aim of the study was therefore to compare the data on porpoise parasitofauna from this subpopulation with those on porpoises from other areas. The study included 37 individuals from 1995 to 2019; eight species of parasites were found (prevalence 83.8%, mean intensity 724.2, range 2–3940), with a predominance of lung nematodes – Stenurus minor (94.7%), Torynurus convolutus (69.4%), Pseudalius inflexus (63.8%), Halocercus invaginatus (22.2%); the highest intensity was recorded for S. minor (989, 53–2928). Two species of Anisakidae (Anisakis simplex – 33.3%, Contracaecum sp. – 20.0%) were found in the digestive tracts, which were a new record for this population. The fluke Campula oblonga was found in the livers of 31.3% of porpoises. The tapeworm Diphylobothrium stemmacephalum was also recorded in the intestine of one individual; this is typical for these hosts, but previously undetected in the Baltic subpopulation. Parasites coexisted in numerous hosts, constituting a heavy burden for them. The obtained data were compared with those from the P. phocoena parasitofauna from other regions, based on a compiled checklist (1809–2021) including all species of porpoise parasites (55 taxa). Compared to the worldwide porpoise parasitofauna checklist, the number of parasites found in the nominative subspecies (Baltic Proper subpopulation) is small: including only 10 taxa (eight in the current study). These species are typical of porpoises and usually the most common; however, the level of infection of Baltic porpoises (intensity and total parasite load) is very high, which can undoubtedly have a negative impact on their condition and overall health.

Due to marine mammals’ demonstrated susceptibility to SARS-CoV-2, based upon the homology level of their angiotensin-converting enzyme 2 (ACE2) viral receptor with the human one, alongside the global SARS-CoV-2 occurrence and fecal contamination of the river and marine ecosystems, SARS-CoV-2 infection may be plausibly expected to occur also in cetaceans, with special emphasis on inshore species like bottlenose dolphins (Tursiops truncatus). Moreover, based on immune and inflammatory responses to SARS-CoV-2 infection in humans, macrophages could also play an important role in antiviral defense mechanisms. In order to provide a more in-depth insight into SARS-CoV-2 susceptibility in marine mammals, we evaluated the presence of SARS-CoV-2 and the expression of ACE2 and the pan-macrophage marker CD68. Aliquots of tissue samples, belonging to cetaceans stranded along the Italian coastline during 2020-2021, were collected for SARS-CoV-2 analysis by real-time PCR (RT-PCRT) (N = 43) and Immunohistochemistry (IHC) (N = 59); thirty-two aliquots of pulmonary tissue sample (N = 17 Tursiops truncatus, N = 15 Stenella coeruleoalba) available at the Mediterranean Marine Mammal Tissue Bank (MMMTB) of the University of Padua (Legnaro, Padua, Italy) were analyzed to investigate ACE2 expression by IHC. In addition, ACE2 and CD68 were also investigated by Double-Labeling Immunofluorescence (IF) Confocal Laser Microscopy. No SARS-CoV-2 positivity was found in samples analyzed for the survey while ACE2 protein was detected in the lower respiratory tract albeit heterogeneously for age, gender/sex, and species, suggesting that ACE2 expression can vary between different lung regions and among individuals. Finally, double IF analysis showed elevated colocalization of ACE2 and CD68 in macrophages only when an evident inflammatory reaction was present, such as in human SARS-CoV-2 infection.

Two major oceanographic changes have recently propagated through several trophic levels in coastal areas of Southeast Greenland (SEG). Firstly, the amount of drift-ice exported from the Fram Strait and transported with the East Greenland Current (EGC) has decreased significantly over the past two decades, and a main tipping element (summer sea ice) has virtually disappeared since 2003 leading to a regime shift in oceanographic and ecological conditions in the region. The following 20-year period with low or no coastal sea ice is unique in the 200-year history of ice observations in the region, and the regime shift is also obvious in the volume of ice export through the Fram Strait after 2013. In the same period, the temperature of the EGC south of 73.5 N has increased significantly (>2°C) since 1980. Secondly, the warm Irminger Current, which advects warm, saline Atlantic Water into the region, has become warmer since 1990. The lack of pack ice in summer together with a warming ocean generatedcascading effects on the ecosystem in SEG that are manifested in a changed fishfauna with an influx of boreal species in the south and the subarctic capelin further north. At higher trophic levels there has been an increase in the abundance of severalboreal cetaceans (humpback, fin, killer, and pilot whales and dolphins) that are eithernew to this area or occur in historically large numbers. It is estimated that the new cetacean species in SEG are responsible for an annual predation level of 700,000 tonsof fish. In addition, predation on krill species is estimated at >1,500,000 tons mainlyconsumed by fin whales. Simultaneously, there has been a reduction in the abundance and catches of narwhals and walruses in SEG and it is suggested that these specieshave been impacted by the habitat changes.

Knowledge gaps surrounding animal welfare assessment in hunted terrestrial wild mammals and seals were highlighted in the reviews by Knudsen (2005) and EFSA (2007). Following these reviews, the present paper aims to report on developments in the quantitative assessment of welfare outcomes in wild mammals killed via rifle shooting, and modern explosive harpoon grenades used in the killing of whales. Time to death (TTD) and instantaneous death rate (IDR) are widely accepted ante-mortem variables for assessing the duration of suffering during the killing process. The addition of post-mortem assessments allows for validation of TTD and IDR, thus providing a more accurate appraisal of animal welfare during hunting. While this combined assessment for large cetaceans has been implemented since the 1980s in the Norwegian minke whale (Balaenoptera acutorostrata) hunt, we report that this approach has been implemented in studies of the Icelandic minke and fin whale (Balaenoptera physalus) hunts, as well as the Canadian and Norwegian commercial harp seal (Pagophilus groenlandicus) hunts. Additionally, this approach has been incorporated into welfare studies in terrestrial herbivore management programmes. Quantitative welfare assessment during hunts is capable of effectively evaluating the weapons used and judging modifiable variables such as projectile choice, optimal shooting procedure, as well as identifying areas for improvement in hunter training. In moving towards a standardised approach for welfare outcome assessment, an established framework can effectively allow all hunts to be contrasted and allow for identification of optimal strategies that minimise animal suffering.

Harbor seals (Phoca vitulina) live in cold temperate or polar seas and molt annually, renewing their fur over a period of approximately 4 wk. Epidermal processes at this time require a warm skin; therefore, to avoid an excessive energy cost at sea during the molt, harbor seals and many other pinnipeds increase the proportion of time they are hauled out on land. We predicted that metabolic rate during haul-out would be greater during the molt to sustain an elevated skin temperature in order to optimize skin and hair growth. To examine this, we measured post-haul-out oxygen consumption (V˙O2) in captive harbor seals during molt and postmolt periods. We recorded greater V˙O2 of seals while they were molting than when the molt was complete. Post-haul-out V˙O2 increased faster and reached a greater maximum during the first 40 min. Thereafter, V˙O2 decreased but still remained greater, suggesting that while metabolic rate was relatively high throughout haul-outs, it was most pronounced in the first 40 min. Air temperature, estimated heat increment of feeding, and mass also explained 15.5% of V˙O2 variation over 180 min after haul-out, suggesting that the environment, feeding state, and body size influenced the metabolic rate of individual animals. These results show that molting seals have greater metabolic rates when hauled out, especially during the early stages of the haul-out period. As a consequence, human disturbance that changes the haul-out behavior of molting seals will increase their energy costs and potentially extend the duration of the molt. Publisher PDF

35 pages, 3 figures.-- Open access, Marine mammals can play important ecological roles in aquatic ecosystems, and their presence can be key to community structure and function. Consequently, marine mammals are often considered indicators of ecosystem health and flagship species. Yet, historical population declines caused by exploitation, and additional current threats, such as climate change, fisheries bycatch, pollution and maritime development, continue to impact many marine mammal species, and at least 25% are classified as threatened (Critically Endangered, Endangered or Vulnerable) on the IUCN Red List. Conversely, some species have experienced population increases/recoveries in recent decades, reflecting management interventions, and are heralded as conservation successes. To continue these successes and reverse the downward trajectories of at-risk species, it is necessary to evaluate the threats faced by marine mammals and the conservation mechanisms available to address them. Additionally, there is a need to identify evidence-based priorities of both research and conservation needs across a range of settings and taxa. To that effect we: (1) outline the key threats to marine mammals and their impacts, identify the associated knowledge gaps and recommend actions needed; (2) discuss the merits and downfalls of established and emerging conservation mechanisms; (3) outline the application of research and monitoring techniques; and (4) highlight particular taxa/populations that are in urgent need of focus, S.E.N. acknowledges funding from the Natural Environment Research Council (NE/L002434/1). S.E.N. and B.J.G. also acknowledge support from the European Union (INDICIT; EU grant agreement no. 110661/ 2018/ 794561/ SUB/ENV. C2). E.C. has a doctoral fellowship from the World Wildlife Foundation - Education for Nature. M.I.D.C. was supported by the UK Department for Business and Industrial Strategy (BEIS; project number OESEA-16-78). D.J.F.R. was supported by National Capability funding from the UK Natural Environment Research Council (NERC) to the Sea Mammal Research Unit (SMRU) (grant no. SMRU1001). A.B.O. acknowledges funding from the Office of Naval Research (award no. N000141613017). D.M.P. was supported by the Whale Habitat Professorship Endowment Fund, Marine Mammal Institute, Oregon State University. K.A.S. was supported by a Royal Society of New Zealand Te Aparangi Rutherford Discovery Fellowship

Large volumes of conventional crude oil continue to be shipped by sea from production to consumption areas across the globe. In addition, unconventional petroleum products also transverse pelagic habitats; for example, diluted bitumen from Canada’s oilsands which is shipped along the Pacific coast to the United States and Asia. Therefore, there is a continuing need to assess the toxicological consequences of chronic and catastrophic petroleum spillage on marine wildlife. Peer-reviewed literature on the toxicity of unconventional petroleum such as diluted bitumen exists for teleost fish, but not for fauna such as marine mammals. In order to inform research needs for unconventional petroleum toxicity we conducted a comprehensive literature review of conventional petroleum toxicity on marine mammals. The common endpoints observed in conventional crude oil exposures and oil spills include hematological injury, modulation of immune function and organ weight, genotoxicity, eye irritation, neurotoxicity, lung disease, adrenal dysfunction, metabolic and clinical abnormalities related to oiling of the pelage, behavioural impacts, decreased reproductive success, mortality, and population-level declines. Based on our findings and the body of literature we accessed, our recommendations for future research include: 1) improved baseline data on PAH and metals exposure in marine mammals, 2) improved pre- and post-spill data on marine mammal populations, 3) the use of surrogate mammalian models for petroleum toxicity testing, and 4) the need for empirical data on the toxicity of unconventional petroleum to marine mammals.

Over the last decades, global warming has contributed to changes in marine species composition, abundance and distribution, in response to changes in oceanographic conditions such as temperature, acidification, and deoxygenation. Experimentally derived thermal limits, which are known to be related to observed latitudinal ranges, have been used to assess variations in species distribution patterns. However, such experiments cannot be undertaken on free-swimming large marine predators with wide-range distribution, like cetaceans. An alternative approach is to elicit expert's knowledge to derive species' thermal suitability and assess their thermal responses, something that has never been tested in these taxa. We developed and applied a methodology based on expert-derived thermal suitability curves and projected future responses for several species under different climate scenarios. We tested this approach with ten cetacean species currently present in the biogeographic area of Macaronesia (North Atlantic) under Representative Concentration Pathways 2.6, 4.5 and 8.5, until 2050. Overall, increases in annual thermal suitability were found for Balaenoptera edeni, Globicephala macrorhynchus, Mesoplodon densirostris, Physeter macrocephalus, Stenella frontalis, Tursiops truncatus and Ziphius cavirostris. Conversely, our results indicated a decline in thermal suitability for B. physalus, Delphinus delphis, and Grampus griseus. Our study reveals potential responses in cetaceans' thermal suitability, and potentially in other highly mobile and large predators, and it tests this method's applicability, which is a novel application for this purpose and group of species. It aims to be a cost-efficient tool to support conservation managers and practitioners. AS was funded by the Portuguese Foundation for Science and Technology (FCT) through the PhD grant PD/BD/135352/2017. AS, REC, HC and TCL acknowledge the support from the Portuguese Foundation for Science and Technology (FCT) under the programmatic funding granted to cE3c Research Centre (UIDP/00329/2020). PA was funded by the Program ‘Agustín de Betancourt’ of La Laguna University and Cabildo de Tenerife throughout the project CETTUS. AD, FA and MF had the support of the Oceanic Observatory of Madeira throughout the project M1420-01-0145-FEDER-000001-OOM, of the Portuguese Foundation for Science and Technology (FCT) throughout the strategic projects UIDB/04292/2020 and UIDP/04292/2020 granted to MARE, LA/P/0069/2020 granted to the Associate Laboratory ARNET, of the ARDITI - Madeira's Regional Agency for the Development of Research Technology and Innovation throughout the project M1420-09-5369-FSE000002, and of the Project Intertagua (Interreg MAC2/1.1a/385). MDL was funded as a contractor of the US Government under contract number: 1305M418DNFF0012. CFS acknowledges funding from FCT under the strategic project UIDB/ 04292/2020 awarded to MARE, project LA/P/0069/2020 granted to the Associate Laboratory ARNET, and FCT research contract 2020.03704. CEECIND. This research was supported by the European Union‘s Horizon 2020 research and innovation programme under grant agreement No 776661, project “SOCLIMPACT—DownScaling CLImate imPACTs and decarbonisation pathways in EU islands and enhancing socioeconomic and non-market evaluation of Climate Change for Europe, for 2050 and beyond”. info:eu-repo/semantics/publishedVersion

Made available in DSpace on 2021-06-25T10:15:28Z (GMT). No. of bitstreams: 0 Previous issue date: 2021-01-01 Agência Nacional do Petróleo, Gás Natural e Biocombustíveis Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) We report for the first time the infection of dolphins with Ascocotyle longa found in the intestines of three different species, Sotalia guianensis, Steno bredanensis, and Tursiops truncatus gephyreus, which were found washed ashore along the southeastern and southern Brazilian coast. The worms were identified based on morphological and molecular data using the 28S rDNA gene and the COI gene. Specimens of A. longa from the pinniped Otaria flavescens were also analyzed. As the first isolation of A. longa from cetaceans, the present study increases the distribution area and range of definitive hosts of this trematode, and provides new molecular data to complement the phylogeny of the group in future studies, thus contributing to the scientific knowledge of this potentially zoonotic parasite. Laboratory of Parasitology of Wild Animals Division of Parasitology Institute of Biosciences São Paulo State University (UNESP) Marine Zoology Unit Cavanilles Institute of Biodiversity and Evolutionary Biology Science Park University of Valencia (UV) Department of Morphology Institute of Biology Federal University of Pelotas (UFPel) Laboratory of Ecology and Conservation of Coastal and Marine Tetrapods University of the Region of Joinville (UNIVILLE) Laboratory of Zoology Department of Fishery and Biology Engineering Santa Catarina State University (UDESC) Laboratory of Parasitology of Wild Animals Division of Parasitology Institute of Biosciences São Paulo State University (UNESP) CNPq: 10477/2017-4 CNPq: 140873/2017-1 FAPESP: 2016/50377-1 CNPq: 309125/2017-0 CNPq: 440496/2015-2 CAPES: 88881.189606/2018-01

Biodiversity in the oceans has dramatically declined since the beginning of the industrial era, with accelerated loss of marine biodiversity impairing the ocean's capacity to maintain vital ecosystem services. A few organisms epitomize the damaging and long‐lasting effects of anthropogenic exploitation: Some whale species, for instance, were brought to the brink of extinction, with their population sizes reduced to such low levels that may have caused a significant disruption to their reproductive dynamics and facilitated hybridization events. The incidence of hybridization is nevertheless believed to be rare, and very little information exists on its directionality. Here, using genetic markers, we show that all but one whale hybrid sample collected in Icelandic waters originated from the successful mating of male fin whale and female blue whale, thus suggesting unidirectional hybridization. We also demonstrate for the first time the existence of a second‐generation adult (male) hybrid resulting from a backcross between a female hybrid and a pure male fin whale. The incidence of hybridization events between fin and blue whales is likely underestimated and the observed unidirectional hybridization (for F1 and F2 hybrids) is likely to induce a reproductive loss in blue whale, which may represent an additional challenge to its recovery in the Atlantic Ocean compared to other rorquals.

Parafilaroides decorus, also known as sea lion lungworm, is a metastrongyloid nematode that infects otariid hosts, such as the charismatic California sea lion, Zalophus californianus. P. decorus causes bronchointerstitial pneumonia, respiratory distress, reduced ability to swim, dive and hunt and as a result, increased mortality particularly in young animals. Respiratory disease is a leading cause of stranding and admission to rehabilitation centers on the Pacific coast. Low-coverage genomic sequencing of four P. decorus individuals analyzed through Galaxy's RepeatExplorer identified a novel repeat DNA family we employed to design a sensitive quantitative PCR (qPCR) assay for diagnosing infections from fecal or sputum samples. The assay detects as little as 10 fg of P. decorus DNA and a linear regression model developed using a standard curve can be used to estimate the concentration of P. decorus DNA in a sample, ± 0.015 ng. This knowledge can be leveraged to estimate the level of parasite burden, which can be used to design improved treatments for animals in rehabilitation. Improved treatment of infections will aid in more animals being successfully released back into the wild., Graphical abstract Image 1, Highlights • Developed qPCR assay for P. decorus. • Sensitive to 10 fg. • Applicable for feces or sputum.

Reliable age estimation is an essential tool to assess the status of wildlife populations and inform successful management. Aging methods, however, are often limited by too few data, skewed demographic representation, and by single or uncertain morphometric relationships. In this study, we synthesize age estimates in southern sea otters Enhydra lutris nereis from 761 individuals across 34 years of study, using multiple noninvasive techniques and capturing all life stages from 0 to 17 years of age. From wild, stranded, and captive individuals, we describe tooth eruptions, tooth wear, body length, nose scarring, and pelage coloration across ontogeny and fit sex‐based growth functions to the data. Dental eruption schedules provided reliable and identifiable metrics spanning 0.3–9 months. Tooth wear was the most reliable predictor of age of individuals aged 1–15 years, which when combined with total length, explained >93% of observed age. Beyond age estimation, dental attrition also indicated the maximum lifespan of adult teeth is 13‒17 years, corresponding with previous estimates of life expectancy. Von Bertalanffy growth function model simulations of length at age gave consistent estimates of asymptotic lengths (male Loo = 126.0‒126.8 cm, female Loo = 115.3‒115.7 cm), biologically realistic gestation periods (t 0 = 115 days, SD = 10.2), and somatic growth (male k = 1.8, SD = 0.1; female k = 2.1, SD = 0.1). Though exploratory, we describe how field radiographic imaging of epiphyseal plate development or fusions may improve aging of immature sea otters. Together, our results highlight the value of integrating information from multiple and diverse datasets to help resolve conservation problems., By synthesizing more than two decades of southern sea otter physical examination data from strandings, captive‐rearing for release, and field studies, we provide strong support for adopting minimally invasive aging techniques based on metrics obtainable during brief field capture. These techniques provide the means to gather age‐specific information from a living, wild population to inform management decisions focused on restoring sea otters and their ecosystems throughout California. Our results also highlight the value of integrating information from multiple and diverse datasets to help resolve conservation problems.

Krill (Euphausia superba) catch is currently the most relevant fishery industry in Antarctic waters. This resource is a keystone species in the Antarctic food web, sustaining the contribution to the trophic ecology of many invertebrate and vertebrate species. To catch krill, part of the fleet in this fishery uses large mid-water nets that also retain a diversity of other organisms like plankton, meroplankton, and fish species as bycatch. Therefore, it is necessary to understand and evaluate the magnitude of this incidental catch, as well as the potential interactions between krill fishing gear with seabirds and mammals. To estimate the composition and extent of bycatch for this fishery included 784 samples of 25 kg and an equal number of 1 kg sub-samples obtained from Antarctic krill catches in Subarea 48, between years 2012 and 2016. A total of 15 fish species were identified along with the record of five other taxa and other unidentified specimens. The most relevant fish species bycaught by weight were mackerel icefish Champsocephalus gunnari, South Georgia icefish Pseudochaenichthys georgianus, and painted notie Lepidonotothen larseni. Additionally, 20 interactions with seabirds and nine interactions with Antarctic fur seals (Arctocephalus gazella) were registered. In the five years of operations, only three seabirds died, and only two individuals of A. gazelle caught by the net were killed.

Unmanned aerial vehicles (UAVs) are increasingly used for wildlife research and monitoring, but little information exists on their potential effect on marine mammals. We assessed the effects of a UAV on the behavior of southern right whales (Eubalaena australis) in Australia. Focal follows of ten right whale mother-calf pairs were conducted using a theodolite. Control data were recorded for 30 min, and then a DJI Inspire 1 Pro was flown above the whales for 10 min at 5 m altitude. Potential changes to horizontal behavior (swim speed and turning angle) and surfacing pattern (interbreath intervals) were investigated by comparing mother-calf behavior before and during UAV approaches. Changes in respiration rate were used to quantify energetic effects. We also explored acoustic cue perceptibility of the UAV at 5, 10, and 30 m altitude, by measuring the received UAV underwater noise level on whales equipped with acoustic tags (DTAGs). The received noise levels were 86.0 ± 3.9 dB re 1 μPa, while the measured ambient noise was 80.7 ± 7.3 dB re 1 μPa in the same frequency band (100–1,500 Hz). No behavioral response to the UAV was observed. This provides support for UAVs as a noninvasive tool to study baleen whale behavior and ecophysiology.

Whisker touch is an active sensory system. Previous studies in Pinnipeds have adopted relatively stationary tasks to judge tactile sensitivity, which may not accurately promote natural whisker movements and behaviours. This study developed a novel feeding task, termed fish sweeping to encourage whisker movements. Head and whisker movements were tracked from video footage in Harbor seal (Phoca vitulina), California sea lion (Zalophus californianus) and Pacific walrus (Odobenus rosmarus divergens). All species oriented their head towards the moving fish target and moved their whiskers during the task. Some species also engaged in whisker control behaviours, including head-turning asymmetry in the Pacific walrus, and contact-induced asymmetry in the Pacific walrus and California sea lion: behaviours that have only previously been observed in terrestrial mammals. This study confirms that Pinnipeds should be thought of as whisker specialists, and that whisker control (movement and positioning) is an important aspect of touch sensing in these animals, especially in sea lions and walruses. That the California sea lion controls whisker movement in relation to an object, and also had large values of whisker amplitude, spread and asymmetry, suggests that California sea lions are a promising model with which to further explore active touch sensing. Electronic supplementary material The online version of this article (10.1007/s00359-020-01408-8) contains supplementary material, which is available to authorized users.

Identifying and quantifying the effects of climate change that alter the habitat overlap of marine predators and their prey population distributions is of great importance for the sustainable management of populations. This study uses Bayesian joint models with integrated nested Laplace approximation (INLA) to predict future spatial density distributions in the form of common spatial trends of predator–prey overlap in 2050 under the “business‐as‐usual, worst‐case” climate change scenario. This was done for combinations of six mobile marine predator species (gray seal, harbor seal, harbor porpoise, common guillemot, black‐legged kittiwake, and northern gannet) and two of their common prey species (herring and sandeels). A range of five explanatory variables that cover both physical and biological aspects of critical marine habitat were used as follows: bottom temperature, stratification, depth‐averaged speed, net primary production, and maximum subsurface chlorophyll. Four different methods were explored to quantify relative ecological cost/benefits of climate change to the common spatial trends of predator–prey density distributions. All but one future joint model showed significant decreases in overall spatial percentage change. The most dramatic loss in predator–prey population overlap was shown by harbor seals with large declines in the common spatial trend for both prey species. On the positive side, both gannets and guillemots are projected to have localized regions with increased overlap with sandeels. Most joint predator–prey models showed large changes in centroid location, however the direction of change in centroids was not simply northwards, but mostly ranged from northwest to northeast. This approach can be very useful in informing the design of spatial management policies under climate change by using the potential differences in ecological costs to weigh up the trade‐offs in decisions involving issues of large‐scale spatial use of our oceans, such as marine protected areas, commercial fishing, and large‐scale marine renewable developments., This study tests a range of analytical techniques to quantify ecological costs of climate change on habitat availability of predator–prey or competing mobile species. The study demonstrates how to detect environmentally sensitive habitat areas and is highly useful for habitat management policies under climate change.

Este artículo se encuentra disponible en la siguiente URL: https://onlinelibrary.wiley.com/doi/epdf/10.1002/cyto.a.24693 Marine mammals may suffer alterations in platelet function and hemostasia due to multiple pathologies, environmental conditions (including stress) or exposure to different contaminants that induce platelet activation. Detecting early alterations in platelet function in these animals could be an especially relevant diagnostic tool in these species because they typically do not show signs of weakness or disease until the pathology is in advanced state, in order to avoid attracting predators in natural conditions. The study of early markers of platelet activation is relevant for the detection, monitoring and therapy of inflammation and hemostasis disorders. Flow cytometry provides a convenient method to evaluate platelet activation by following the kinetics of intracellular Ca2+, using sensitive fluorescent indicators that can be loaded into intact cells. In order to study intraplatelet Ca2+ mobilization in marine mammals, we have adapted a kinetic assay of human platelet activation to study platelet activation in whole-blood samples of bottlenose dolphins (Tursiops truncatus) using the Ca2+-sensitive dye Fluo-4AM and a clone of the platelet-specific antibody CD41-PE that recognizes dolphin platelets. This no-wash, no-lyse protocol provides a simple and sensitive tool to assess in vitro the time course and intensity of signaltransduction responses to platelet agonists under near-physiological conditions. The adaptation of this technique to marine mammals represents a methodological advance for basic and clinical veterinary applications but also for general environmental studies on these species.

Marine mammals are one of the groups of animals most affected by marine pollution including that by organic compounds which, besides bearing recognised harmful effects to adults, they may also affect foetuses through placental transfer. In this study we analysed samples of fin whale (Balaenoptera physalus) females and their foetuses collected in the western Iceland summer feeding grounds in 2018. Three different families of organic pollutants: organophosphate esters (OPEs); halogenated flame retardants (HFRs); and short chain chlorinated paraffins (SCCPs), were analysed and their placental transfer investigated. HFRs were detected in 87.5% of females and 100% of foetus samples with concentrations that ranged between nd-15.4 and 6.37–101 ng/g lipid weight (lw), respectively. OPEs were detected in all samples, both from females (85.8–567 ng/g lw) and foetuses (nq-1130 ng/g lw). SCCPs were detected in 87.5% of female samples and 100% of foetal samples with concentrations that ranged between nd-30.9 and nq-574 ng/g lw, respectively. For OPE compounds, a significant negative correlation was observed between the logarithm maternal transfer ratio and their log Kow, indicating that a high lipophilicity reduced placental transfer rate. Interestingly, the decabromodiphenyl ethane (DBDPE) was the compound with the highest log Kow but also the one that was transferred the most from mothers to foetuses, calling for in-depth research on this pollutant. These results constitute the first evidence of mother-calf transfer of plasticizers and flame retardants in fin whales. Further investigations are needed to determine their potential effects on this species and other groups of animals., During the conduct of this study, one of its authors, Gísli Arnór Víkingsson, sadly died unexpectedly. Serve this article as a last tribute to his memory. This study was supported by the Spanish Ministry of Science and innovation (grant CEX 2018-000794-S and project PID2020-119712GBI00) (MCIN/AEI/10.13039/501100011033), by the Ministry of Economic Affairs and Digital Transformation (project CGL2015-70468-R (MINECO, FEDER, UE)), and by the Generalitat de Catalunya (Consolidated Research Group 2017 SGR 1404 - Water and Soil Quality Unit 2017 SGR 1404).

9 pages, 5 pages, 3 figures, supplementary data https://doi.org/10.1016/j.envpol.2022.120149.-- Data availability: Data will be made available on request, A total of 164 blood samples from 16 clinically healthy bottlenose dolphins (Tursiops truncatus), were obtained from an aquarium in Spain between 2019 and 2020, as part of their preventive medicine protocol. In addition to conventional haematological and biochemical analyses, plasmatic B-esterase activities were characterised to determine the potential application of such analyses in wild counterparts. The hydrolysis rates for the substrates of acetylcholinesterase (AChE), butyrylcholinesterase (BuChE) and carboxylesterase (CE) activity in plasma were measured, the last using two commercial substrates, p-nitrophenyl acetate (pNPA) and p-nitrophenyl butyrate (pNPB). Activity rates (mean ± SEM in nmol/min/mL plasma) were (in descending order): AChE (125.6 ± 3.8), pNPB-CE (65.0 ± 2.2), pNPA-CE (49.7 ± 1.1) and BuChE (12.8 ± 1.3). These values for dolphins are reported in here for the first time in this species. Additionally, the in vitro sensitivity of two B-esterases (AChE and pNPB-CE) to chemicals of environmental concern was determined, and the protective role of plasmatic albumin assessed. Out of the B-esterases measured in plasma of dolphin, AChE activity was more responsive in vitro to pesticides, while CEs had a low response to plastic additives, likely due to the protective presence of albumin. However, the clear in vitro interaction of these environmental chemicals with purified AChE from electric eels and recombinant human hCEs (hCE1 and hCE2) and albumin, predicts their impact in other tissues that require in vivo validation. A relationship between esterase-like activities and health parameters in terrestrial mammals has already been established. Thus, B-esterase measures could be easily included in marine mammal health assessment protocols for dolphins as well, once the relationship between these measures and the animal's fitness has been established, To the institutional support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S)

Monitoring marine mammal populations is essential to permit assessment of population status as required by both national and international legislation. Traditional monitoring methods often rely on visual and/or acoustic detections from vessels and aircraft, but limitations including cost, errors in the detection of some species and dependence on taxonomic expertise, as well as good weather and visibility conditions often limit the temporal and spatial scale of effective, long-term monitoring programs. In recent years, environmental DNA (eDNA) has emerged as a revolutionary tool for cost-effective, sensitive, noninvasive species monitoring in both terrestrial and aquatic realms. eDNA is a rapidly developing field and a growing number of studies have successfully implemented this approach for the detection and identification of marine mammals. Here, we review 21 studies published between 2012 and 2021 that employed eDNA for marine mammal monitoring including single species detection, biodiversity assessment and genetic characterization. eDNA has successfully been used to infer species presence (especially useful for rare, elusive or threatened species) and to characterize the population genetic structure, although additional research is needed to support the interpretation of non-detections. Finally, we discuss the challenges and the opportunities that eDNA could bring to marine mammal monitoring as a complementary tool to support visual and acoustic methods.

A hybrid solid phase extraction (HybridSPE) protocol tailored to ultra-performance convergence chromatography tandem mass spectrometry (UPC2-MS/MS) was developed for the determination of 19 steroid hormones in grey seal (Halichoerus grypus) blood plasma. In this study, the protocol demonstrated acceptable absolute recoveries ranging from 33 to 90%. The chromatographic separation was carried out using a gradient elution program with a total run time of 5 min. The method repeatability ranged from 1.9% to 24% for most target analytes and the method limits of quantification (mLOQs) ranged from 0.03 to 1.67 ng/mL. A total of 9 plasma samples were analysed to demonstrate the applicability of the developed method in blood plasma from a wildlife species. A total of 13 steroid hormones were quantified in grey seal pup plasma. The most prevalent steroids: cortisol, cortisone, corticosterone, 11-deoxycortisol, progesterone and 17α-hydroxyprogesterone were detected at concentrations in the range of 9.09–40.1, 7.10–24.2, 0.742–10.7, 1.06–5.72, 0.38–4.38 and

Historically, the seals and harbour porpoises of the Baltic Sea and North Sea have been subjected to hunting, chemical pollutants and repeated mass mortalities, leading to significant population fluctuations. Despite the conservation implications and the zoonotic potential associated with viral disease outbreaks in wildlife, limited information is available on the circulation of viral pathogens in Baltic Sea seals and harbour porpoises. Here, we investigated the presence of the influenza A virus (IAV), the phocine distemper virus (PDV) and the cetacean morbillivirus (CeMV) in tracheal swabs and lung tissue samples from 99 harbour seals, 126 grey seals, 73 ringed seals and 78 harbour porpoises collected in the Baltic Sea and North Sea between 2002–2019. Despite screening 376 marine mammals collected over nearly two decades, we only detected one case of PDV and two cases of IAV linked to the documented viral outbreaks in seals in 2002 and 2014, respectively. Although we find no evidence of PDV and IAV during intermediate years, reports of isolated cases of PDV in North Sea harbour seals and IAV (H5N8) in Baltic and North Sea grey seals suggest introductions of those pathogens within the sampling period. Thus, to aid future monitoring efforts we highlight the need for a standardized and continuous sample collection of swabs, tissue and blood samples across Baltic Sea countries.

Simple Summary Congenital hearing loss (i.e., hearing impairment present at birth) is recognized in humans and other terrestrial species, but there is a lack of information on congenital malformations and associated hearing loss in pinnipeds (seals, sea lions, and walruses). Baseline knowledge on marine mammal inner ear malformations is essential to differentiate between congenital and acquired abnormalities, which may be caused by infectious agents, age, or anthropogenic interactions, such as noise exposure. Analysis of the cochlea of a neonate harbor seal (Phoca vitulina) revealed bilateral loss of inner hair cells (sensory cells responsible for transducing the auditory signal) while the outer hair cells (sensory cells responsible for sound amplification and frequency selectivity and sensitivity) were intact. The selective inner hair cell loss (up to 84.6% of loss) was more severe in the basal turn, where the high frequencies are encoded. Potential causes and consequences are discussed. This is the first report of a case of selective inner hair cell loss in a marine mammal neonate, likely congenital. Abstract Congenital hearing loss is recognized in humans and other terrestrial species. However, there is a lack of information on its prevalence or pathophysiology in pinnipeds. It is important to have baseline knowledge on marine mammal malformations in the inner ear, to differentiate between congenital and acquired abnormalities, which may be caused by infectious pathogens, age, or anthropogenic interactions, such as noise exposure. Ultrastructural evaluation of the cochlea of a neonate harbor seal (Phoca vitulina) by scanning electron microscopy revealed bilateral loss of inner hair cells with intact outer hair cells. The selective inner hair cell loss was more severe in the basal turn, where high-frequency sounds are encoded. The loss of inner hair cells started around 40% away from the apex or tip of the spiral, reaching a maximum loss of 84.6% of hair cells at 80–85% of the length from the apex. Potential etiologies and consequences are discussed. This is believed to be the first case report of selective inner hair cell loss in a marine mammal neonate, likely congenital.

Stable carbon (δ13C) and nitrogen (δ15N) isotope compositions of bone and dentine collagen extracted from museum specimens have been widely used to study the paleoecology of past populations. Due to possible systematic differences in stable isotope values between bone and dentine, dentine values need to be transformed into bone-collagen equivalent using a correction factor to allow comparisons between the two collagen sources. Here, we provide correction factors to transform dentine δ13C and δ15N values into bone-collagen equivalent for two toothed whales: narwhal and beluga.We sampled bone and tooth dentine from the skulls of 11 narwhals and 26 belugas. In narwhals, dentine was sampled from tusk and embedded tooth; in beluga, dentine was sampled from tooth. δ13C and δ15N were measured and intraindividual bone and dentine isotopic compositions were used to calculate correction factors for each species.We detected differences in δ13C and δ15N. In narwhals, we found (i) lower average δ13C and δ15N in bone compared with dentine; (ii) no difference in dentine δ13C between tusk and embedded tooth. For belugas, we also detected lower δ13C and δ15N in bone compared with tooth dentine. The correction factors provided by the study enable the combined analysis of stable isotope data from bone and dentine in these species.

A type of monophasic group B Salmonella enterica with the antigenic formula 4,12:a:- (“Fulica-like”) has been described as associated with harbour porpoises (Phocoena phocoena), most frequently recovered from lung samples. In the present study, lung tissue samples from 47 porpoises found along the Swedish coast or as bycatch in fishing nets were analysed, two of which were positive for S. enterica. Pneumonia due to the infection was considered the likely cause of death for one of the two animals. The recovered isolates were whole genome sequenced and found to belong to sequence type (ST) 416 and to be closely related to ST416/ST417 porpoise isolates from UK waters as determined by core-genome MLST. Serovars Bispebjerg, Fulica and Abortusequi were identified as distantly related to the porpoise isolates, but no close relatives from other host species were found. All ST416/417 isolates had extensive loss of function mutations in key Salmonella pathogenicity islands, but carried accessory genetic elements associated with extraintestinal infection such as iron uptake systems. Gene ontology and pathway analysis revealed reduced secondary metabolic capabilities and loss of function in terms of signalling and response to environmental cues, consistent with adaptation for the extraintestinal niche. A classification system based on machine learning identified ST416/417 as more invasive than classical gastrointestinal serovars. Genome analysis results are thus consistent with ST416/417 as a host-adapted and extraintestinal clonal population of S. enterica, which while found in porpoises without associated pathology can also cause severe opportunistic infections.

Large marine predators exhibit high concentrations of mercury (Hg) as neurotoxic methylmercury, and the potential impacts of global change on Hg contamination in these species remain highly debated. Current contaminant model predictions do not account for intraspecific variability in Hg exposure and may fail to reflect the diversity of future Hg levels among conspecific populations or individuals, especially for top predators displaying a wide range of ecological traits. Here, we used Hg isotopic compositions to show that Hg exposure sources varied significantly between and within three populations of white sharks (Carcharodon carcharias) with contrasting ecology: the north-eastern Pacific, eastern Australasian, and south-western Australasian populations. Through Δ200Hg signatures in shark tissues, we found that atmospheric Hg deposition pathways to the marine environment differed between coastal and offshore habitats. Discrepancies in δ202Hg and Δ199Hg signatures among white sharks provided evidence for intraspecific exposure to distinct sources of marine methylmercury, attributed to population and ontogenetic shifts in foraging habitat and prey composition. We finally observed a strong divergence in Hg accumulation rates between populations, leading to three times higher Hg concentrations in large Australasian sharks compared to north-eastern Pacific sharks, and likely due to different trophic strategies adopted by adult sharks across populations. This study illustrates the variety of Hg exposure sources and bioaccumulation patterns that can be found within a single species and suggests that intraspecific variability needs to be considered when assessing future trajectories of Hg levels in marine predators.

Environmental data is crucial for planning, permitting, execution and post construction monitoring of marine renewable energy projects. In harsh conditions in which marine renewable energy is harvested, integrated monitoring platforms comprising multibeam imaging sonar systems coupled with other sensors can provide multiparametric data of the marine environment surrounding marine renewable energy installations. The aim of this study was to test the possibilities of observing the occurrence of fish and marine mammals using a multibeam imaging sonar system deployed at a wave power test site. The results obtained from a ten-day data set proved the platform as suitable for long time underwater monitoring and also revealed that the occurrence of fish and marine mammals was distributed across characteristic time and space domains. Large fish [>0.4 m] frequently occurred at night-time and near the benthic zone. Small fish [

Marine plastic pollution is projected to increase globally in the next few decades. This holds true for South America where the number of species that interacts with plastics is increasing. In this study, we explore for the first time the potential of certain charismatic species of marine turtles, mammals and seabirds as indicators of plastic pollution in the Río de la Plata (RdP), one of the largest and most important estuarine areas of the Southwest Atlantic. Through a revision of published studies integrated with unpublished data, we summarize studies on the interaction of charismatic marine species with plastics in the region and evaluate their role as indicators of plastic pollution in the RdP based on aspects of their local ecology and key attributes (i.e., biological/ecological, methodological, and conservation attributes) of indicator species. We found that at least 45 charismatic marine species interact –whether by ingestion or entanglement– with plastics in the region. Eight of these species were selected as potential indicators given their occurrence, probability of sampling and interaction with plastics in the RdP, namely: Chelonia mydas, Caretta caretta, Dermochelys coriacea, Pontoporia blainvillei, Arctocephalus australis, Otaria flavescens, Larus dominicanus, and Spheniscus magellanicus. The species shared some key attributes of indicator species, e.g., they are relatively well studied, but differed in critical aspects such as their home range and mobility. We discuss whether the species’ attributes are strengths or weaknesses according to the available knowledge on their ecology in the RdP, and propose a multispecies indicator of plastic pollution given that those strengths and weaknesses can be compensated among species. Monitoring plastic pollution through a combination of species would enable a better understanding of plastic pollution in this relevant area.

Significance Divergent lineages can respond to common environmental factors through convergent processes involving shared genomic components or pathways, but the molecular mechanisms are poorly understood. Here, we provide genomic resources and insights into the evolution of mammalian lineages adapting to aquatic life. Our data suggest convergent evolution, for example, in association with thermoregulation through genes associated with a surface heat barrier (NFIA) and internal heat exchange (SEMA3E). Combined with the support of previous reports showing that the UCP1 locus has been lost in many marine mammals independently, our results suggest that the thermostatic strategy of marine mammals shifted from enhancing heat production to limiting heat loss., The ancestors of marine mammals once roamed the land and independently committed to an aquatic lifestyle. These macroevolutionary transitions have intrigued scientists for centuries. Here, we generated high-quality genome assemblies of 17 marine mammals (11 cetaceans and six pinnipeds), including eight assemblies at the chromosome level. Incorporating previously published data, we reconstructed the marine mammal phylogeny and population histories and identified numerous idiosyncratic and convergent genomic variations that possibly contributed to the transition from land to water in marine mammal lineages. Genes associated with the formation of blubber (NFIA), vascular development (SEMA3E), and heat production by brown adipose tissue (UCP1) had unique changes that may contribute to marine mammal thermoregulation. We also observed many lineage-specific changes in the marine mammals, including genes associated with deep diving and navigation. Our study advances understanding of the timing, pattern, and molecular changes associated with the evolution of mammalian lineages adapting to aquatic life.

Off the California shoreline is a dynamic, thriving collection of ecosystems. This region is a boundary zone that supports the seasonal upwelling of cold, nutrient-rich water to the surface, and is one of only five such zones in the world. Without the endless expanse of blue stretching from its western edge, California would be a very different place.This publication will help you:Understand the physical and atmospheric processes that create the California Current Explore the ecology of the California Current Become aware of threats to marine wildlife off the coast of California and ways in which wildlife is being protected

Funding: K.A.K., R.S.B. and D.P.C. were supported by the E&P Sound and Marine Life Joint Industry Programme (JIP) of the International Association of Oil and Gas Producers (IOGP) (grant no. 00-07-23). K.A.K. was also supported by the National Defense Science and Engineering Graduate (NDSEG) Fellowship. E.P. was supported by the Office of Naval Research (ONR) (grant no. N00014-19-1-2464). D.P.C. was also supported by ONR (grant no. N00014-18-1-2822). Assessing the non-lethal effects of disturbance from human activities is necessary for wildlife conservation and management. However, linking short-term responses to long-term impacts on individuals and populations is a significant hurdle for evaluating the risks of a proposed activity. The Population Consequences of Disturbance (PCoD) framework conceptually describes how disturbance can lead to changes in population dynamics, and its real-world application has led to a suite of quantitative models that can inform risk assessments. Here, we review PCoD models that forecast the possible consequences of a range of disturbance scenarios for marine mammals. In so doing, we identify common themes and highlight general principles to consider when assessing risk. We find that, when considered holistically, these models provide valuable insights into which contextual factors influence a population's degree of exposure and sensitivity to disturbance. We also discuss model assumptions and limitations, identify data gaps and suggest future research directions to enable PCoD models to better inform risk assessments and conservation and management decisions. The general principles explored can help wildlife managers and practitioners identify and prioritize the populations most vulnerable to disturbance and guide industry in planning activities that avoid or mitigate population-level effects. Publisher PDF

The ocean’s ability to transmit underwater sound efficiently over long distances enables anthropogenic noise as a cause of pollution in the global ocean. Ever increasing noise from sources such as sonar, seismic surveys, shipping and piledriving, hold the potential to adversely impact on the surrounding marine environment or ‘acoustic habitat’ to varying degrees. This project quantifies and characterises sound transmission across the continental margin and gauges physical controls on propagation. This allows for assessment and understanding of the processes and potential for noise pollution to impact on marine fauna around sensitive margin ecosystems. A desk study of an industrial seismic survey in the Porcupine Basin was conducted, while acoustic model capacity (2D) and feasibility (3D) have been explored. An offshore experiment was implemented on the eastern margin of the basin to evaluate, compare and contrast propagation along and across a small submarine canyon and adjacent slope. An array of five short-term fixed acoustic and hydrographic moorings were deployed over the study area from depths of 900 - 250 m and a controlled seismic sound source was deployed in a transect around the survey site. All measured data were processed, analysed and examined in the context of assessing physical processes, controls and damage thresholds or disturbance to marine life. Results from these studies and subsequent acoustic modelling identified range from source, slope angle, topography and water column structure as moderators of human noise propagation. Canyon geomorphology was found to enhance noise internally and across margin in both directions, e.g., up to 10 dB re:1μPa zero-to-peak and 4 dB re:1μPa2s SEL (upslope). Seismic airguns, and for the first time bottom trawling, have been confirmed as noise polluters in the Irish offshore, exhibiting levels of concern to marine wildlife. Findings reported herein, inferring that noise could cause damage or disturbance to resident or transient marine mammals along the Irish margin, especially around ecologically diverse canyon hotspots, underline the requirement for regulatory management within Ireland under various European directives, with obligations to monitor ocean noise and enforce mitigation strategies to tackle this pollution source. Key findings and future work planned from this project are intended to align with governance and monitoring initiatives regionally and within the Irish offshore sector. The motivation being to highlight and address anthropogenic noise as a detrimental stressor on a marine environment already under considerable and growing pressure from a multitude of human impacts, including microplastics, ocean acidification and global climate change.

E. coli was isolated from the Salish Sea (Puget Sound) ecosystem, including samples of marine and fresh water, and wildlife dependent on this environment. E. coli isolates were assessed for phenotypic and genotypic resistance to antibiotics. A total of 305 E. coli isolates was characterized from samples collected from: marine water obtained in four quadrants of the Salish Sea; select locations near beaches; fresh water from streams near marine beaches; and fecal samples from harbor porpoises (Phocoena phocoena), harbor seals (Phoca vitulina), river otters (Lontra canadensis), and English sole (Parophrys vetulus). Isolates were evaluated using antimicrobial susceptibility typing, whole-genome sequencing, fumC, and multilocus sequence typing. Resistance and virulence genes were identified from sequence data. Of the 305 isolates from Salish Sea samples, 20 (6.6%) of the E. coli were intermediate, and 31 (10.2%) were resistant to ≥1 class of antibiotics, with 26.9% of nonsusceptible (resistant and intermediate resistant) E. coli isolates from marine mammals and 70% from river otters. The proportion of nonsusceptible isolates from animals was significantly higher than samples taken from marine water (p < 0.0001). A total of 196 unique STs was identified including 37 extraintestinal pathogenic E. coli (ExPEC)-associated STs [ST10, ST38, ST58, ST69, ST73, ST117, ST131, and ST405]. The study suggests that animals may be potential sentinels for antibiotic-resistant and ExPEC E. coli in the Salish Sea ecosystem.

Understanding the trophic niches of marine apex predators is necessary to understand interactions between species and to achieve sustainable, ecosystem-based fisheries management. Here, we review the stable carbon and nitrogen isotope ratios for biting marine mammals inhabiting the Atlantic Ocean to test the hypothesis that the relative position of each species within the isospace is rather invariant and that common and predictable patterns of resource partitioning exists because of constrains imposed by body size and skull morphology. Furthermore, we analyze in detail two species-rich communities to test the hypotheses that marine mammals are gape limited and that trophic position increases with gape size. The isotopic niches of species were highly consistent across regions and the topology of the community within the isospace was well conserved across the Atlantic Ocean. Furthermore, pinnipeds exhibited a much lower diversity of isotopic niches than odontocetes. Results also revealed body size as a poor predictor of the isotopic niche, a modest role of skull morphology in determining it, no evidence of gape limitation and little overlap in the isotopic niche of sympatric species. The overall evidence suggests limited trophic flexibility for most species and low ecological redundancy, which should be considered for ecosystem-based fisheries management.

The modelled acoustic characteristics of three Acoustic Harassment Devices (AHDs) deployed from a fully operational salmonid fish farm, located in the Sound of Mull, Scotland (UK) are presented, using empirical seabed and water column measurements at the same location. In the Beaufort Sea state 0, the depth range of 10--50 m is the maximum range at which AHDs are potentially audible to five marine mammal species. The species present within this survey region are: the harbour porpoise, Phocoena phocoena (99.1 km), the killer whale, Orcinus orca (110 km), the bottlenose dolphin, Tursiops truncatus (89.6 km), the common seal, Phoca vitulina (88 km), and the grey seal, Halichoerus grypus (69 km). Consequently, within the Sound of Mull, all three AHDs could be heard throughout the water column by all species. For two models of AHDs, a behavioural disturbance level of between 140 dB-180 dB is observed at 1.3 km. Habitat displacement is a cause for concern, particularly if several fish farms within a small area all deploy AHDs simultaneously. This can create a confusing sound field of varying intensity, which has potential to deter harbour porpoises from sections of their habitat. If positioned effectively, AHDs have the potential to deter all five marine mammal species from industrial operations such as aquaculture facilities. Source levels, propagation and transmission loss measurements were highly variable and should be considered as site specific, meaning new estimates should be made for each situation.

Objective:To compare the dietary habits of children living in northern villages and in the capital of Greenland, given the reported transition from traditional to westernised diet in adults over recent decades, and to explore the association between consumption of marine mammals and fish (MMF) and the children’s metabolic profile and vitamin D status.Design:Children answered an FFQ encompassing sixty-four individual food types pooled into six food categories. Their pubertal stage, body fat, fitness level, metabolic profile (non-HDL-cholesterol, glycated Hb, insulin, glucose, high-sensitivity C-reactive protein) as well as serum 25-hydroxyvitamin D (25(OH)D) concentration were evaluated.Setting:Siorapaluk and Qaanaaq (north of Greenland) and Nuuk (west).Participants:Children aged 6–18 years (n 177).Results:MMF were most frequently eaten by children from Siorapaluk (mean (sd): 73·4 (14·1) times/month), followed by children from Qaanaaq (37·0 (25·0) times/month), and least often eaten by children from Nuuk (23·7 (24·6) times/month; P < 0·001). Children from Qaanaaq consumed ‘junk food’ more frequently (P < 0·001) and fruits and vegetables less frequently (P < 0·01) than children from Nuuk. MMF consumption was positively associated with serum 25(OH)D concentration (P < 0·05), but the overall prevalence of vitamin D deficiency was high (18 %). No association was found between MMF consumption and metabolic parameters.Conclusions:The dietary transition and influence of western diets have spread to the north of Greenland and only the most remote place consumed a traditional diet highly based on MMF. We found no strong associations of MMF consumption with metabolic health, but a positive association with vitamin D status.

Competitive interactions between marine mammals and fisheries represent some of the most complex challenges in marine resource management worldwide. The development of commercial fisheries and recovering marine mammal populations have contributed to a decrease in fish availability. Whilst ecosystem-based fisheries management (EBFM) can counteract this decrease, achieving the EBFM objectives faces certain major obstacles including insufficient or unreliable data, inapplicable assessment models, as well as inadequate management decisions that do not account for fisheries-induced morphological alterations (FIMA) and marine mammal management. Despite a body of evidence addressing various aspects of marine mammal−fisheries competition, little is known about the effects of marine mammal−fisheries biological interactions affecting the fish viability and food web stability. We review the research on marine mammal− fisheries competitive biological interactions (hereafter biological competition) by focussing on (1) the prerequisites for marine mammal−fisheries biological competition and the relevant metho - dologies to explore them and (2) recent studies revealing the implications of FIMA and trophic interactions for the biological competition. We also discuss the implications of FIMA, eco-evolu- tionary feedback and prey−predator dynamics for EBFM implementation in contemporary har- vested ecosystems. Our main findings reveal a lack of data about marine mammals’ prey choice and selectivity, the need for better representation of marine mammals in modelling approaches and lastly, the necessity for additional research linking FIMA, trophic interactions and the EBFM objectives. To conclude, interdisciplinary approaches may serve to link all of the efforts needed to effectively and holistically support the implementation of EBFM., SI

In the transition from a terrestrial to an aquatic environment, sirenian marine mammals reduced and lost their hind limbs and developed a horizontal caudal fin, the main propulsive organ in extant sirenians. Quadrupedal forms are only known from the Eocene and are represented by three different clades: the amphibious “prorastomids,” the aquatic quadrupedal protosirenids, and Sobrarbesiren cardieli, a four-legged sirenian from the middle Eocene of Spain, considered the sister taxon of the fully aquatic Dugongidae. This ecological shift from terrestrial to an aquatic environment was naturally associated with adaptations, among others, of the skeleton. However, sirenian hind limb bones have been poorly studied because of the scarce material available in the fossil record. Here, we describe in detail the hind limb bones of Sobrarbesiren, analyzing their functional morphology and comparing them with other basal sirenians and cetaceans, and with related terrestrial mammals such as proboscideans and hyracoids. The hind limbs of Sobrarbesiren were capable of a great variety of movements. Based on the presence of a strong sacroiliac articulation, we propose that it swam by dorsoventral pelvic undulation combined with pelvic paddling analogous to extant otters and the “prorastomid” Pezosiren. We also conduct the first microanatomical analysis of hind limb bones of an Eocene sirenian. Data reveal extreme inner compactness in the Sobrarbesiren innominate and femur, with the first description of osteosclerosis in an amniote innominate combined with the highest degree of osteosclerosis observed in amniote femora. The results confirm that the microanatomical changes precede the external morphological changes in such ecological transitions. The process of adaptation of sirenians to an aquatic life was thus a more complex process than previously thought.

This work was funded by Marine Scotland Science (Marine Mammal Scientific Support Program 2, MRE2). It was also supported by NERC National Capability Funding to the Sea Mammal Research Unit (grant no. SMRU10001). 1. Tidal energy converters (turbines) are being developed in many countries as part of attempts to reduce reliance on hydrocarbon fuels. However, the moving blades of tidal turbines pose potential collision risks for marine animals. Accurate assessment of mortality risk as a result of collisions is essential for risk management during planning and consenting processes for marine energy developments. In the absence of information on the physical consequences of such collisions, predicting likely risks relies on theoretical collision risk models. The application of these at a population level usually assumes that all collisions result in mortality. This is unlikely and the approach therefore produces upwardly biased estimates of population consequences. 2. In this study, we estimate the pathological consequences of direct collisions with tidal turbines using seal carcasses and physical models of tidal turbine blades. We quantify severe trauma at a range of impact speeds and to different areas of seal carcasses. A dose–response model was developed with associated uncertainty to determine an impact speed threshold of severe trauma to use in future collision risk models. 3. Results showed that severe trauma was restricted to the thoracic region, with no evidence of injury to the lumbar or cervical spine. Pathological indicators of mortality were only predicted to occur in collision speeds in excess of 5.1 m/s (95% C.I. 3.2–6.6) and was affected by body condition; increasing blubber depth reduced the likelihood of severe trauma. 4. Synthesis and applications. This study provides important information for policy makers and regulators looking to predict the potential impacts of tidal turbines on marine mammals. We demonstrate that the probability of severe trauma in seals due to collisions with turbine blades is highly dependent upon collision speed, and that the majority of predicted collisions are unlikely to cause fatal skeletal trauma. We recommend that collision risk models incorporate appropriate mortality assumptions to ensure accurate estimates of the population consequences are produced in risk assessments for tidal turbine deployments. Postprint

The timing of recurring biological and seasonal environmental events is changing on a global scale relative to temperature and other climate drivers. This study considers the Gulf of Maine ecosystem, a region of high social and ecological importance in the Northwest Atlantic Ocean and synthesizes current knowledge of (a) key seasonal processes, patterns, and events; (b) direct evidence for shifts in timing; (c) implications of phenological responses for linked ecological‐human systems; and (d) potential phenology‐focused adaptation strategies and actions. Twenty studies demonstrated shifts in timing of regional marine organisms and seasonal environmental events. The most common response was earlier timing, observed in spring onset, spring and winter hydrology, zooplankton abundance, occurrence of several larval fishes, and diadromous fish migrations. Later timing was documented for fall onset, reproduction and fledging in Atlantic puffins, spring and fall phytoplankton blooms, and occurrence of additional larval fishes. Changes in event duration generally increased and were detected in zooplankton peak abundance, early life history periods of macro‐invertebrates, and lobster fishery landings. Reduced duration was observed in winter–spring ice‐affected stream flows. Two studies projected phenological changes, both finding diapause duration would decrease in zooplankton under future climate scenarios. Phenological responses were species‐specific and varied depending on the environmental driver, spatial, and temporal scales evaluated. Overall, a wide range of baseline phenology and relevant modeling studies exist, yet surprisingly few document long‐term shifts. Results reveal a need for increased emphasis on phenological shifts in the Gulf of Maine and identify opportunities for future research and consideration of phenological changes in adaptation efforts.

Marine acoustic sources are widely used for geophysical imaging, oceanographic sensing, and communicating with and tracking objects or robotic vehicles in the water column. Under the U.S. Marine Mammal Protection Act and similar regulations in several other countries, the impact of controlled acoustic sources is assessed based on whether the sound levels received by marine mammals meet the criteria for harassment that causes certain behavioral responses. This study describes quantitative factors beyond received sound levels that could be used to assess how marine species are affected by many commonly deployed marine acoustic sources, including airguns, high-resolution geophysical sources (e.g., multibeam echosounders, sidescan sonars, subbottom profilers, boomers, and sparkers), oceanographic instrumentation (e.g., acoustic doppler current profilers, split-beam fisheries sonars), and communication/tracking sources (e.g., acoustic releases and locators, navigational transponders). Using physical criteria about the sources, such as source level, transmission frequency, directionality, beamwidth, and pulse repetition rate, we divide marine acoustic sources into four tiers that could inform regulatory evaluation. Tier 1 refers to high-energy airgun surveys with a total volume larger than 1500 in3 (24.5 L) or arrays with more than 12 airguns, while Tier 2 covers the remaining low/intermediate energy airgun surveys. Tier 4 includes most high-resolution geophysical, oceanographic, and communication/tracking sources, which are considered unlikely to result in incidental take of marine mammals and therefore termed de minimis. Tier 3 covers most non-airgun seismic sources, which either have characteristics that do not meet the de minimis category (e.g., some sparkers) or could not be fully evaluated here (e.g., bubble guns, some boomers). We also consider the simultaneous use of multiple acoustic sources, discuss marine mammal field observations that are consistent with the de minimis designation for some acoustic sources, and suggest how to evaluate acoustic sources that are not explicitly considered here.

International audience; Maritime transportation forecasts project an increase in shipping. In this context, interactions with cetaceans are of growing concern especially when relevant biological data are not available to monitor the impacts. The Agoa sanctuary in the Wider Caribbean region faces this situation. To overcome this issue, we used AIS data to estimate three pressure types from maritime traffic associated with known impacts for cetaceans: (1) “intensity” corresponding to the frequency of vessel presence, (2) “occupancy” corresponding to the duration of ship presence, known to lead to disturbance and noise-related impacts and (3) “speed” presenting the risk of physical injuries from collisions. A simplified approach of the Cumulative Effect Assessment framework was used. We mapped species underwater topographic preferences as a proxy for their distribution to link habitat features with traffic pressure maps to evaluate pressure levels and types. Results showed that three species were more at risk from intensity and speed in the plains: the bottlenose dolphins, the Fraser’s dolphins and the short-finned pilot whales. The speed pressure had the highest score over the habitat types slopes, canyons and valleys, placing sperm whales, Cuvier, Blainville’s and Gervais’s beaked whales at higher risk of collision in these areas. Humpback whales and pantropical spotted dolphins faced a higher risk of disturbance over the continental shelf along the West coast. We recommend a precautionary approach in the Agoa sanctuary: speed reduction in the Pointe-à-Pitre-Marie-Galante route and displacement of shipping lanes to move maritime traffic away from the West Coast.