84 results on '"Nica Borgese"'
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2. Deficiency of an endoplasmic reticulum oxidoreductase and activation of protein translation synergistically impair breast tumor resilience
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Ersilia Varone, Alexander Chernorudisky, Alessandro Cherubini, Alessandra Decio, Nica Borgese, Raffella Giavazzi, and Ester Zito
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Physiology (medical) ,Biochemistry - Published
- 2023
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3. Searching for remote homologs of CAML among eukaryotes
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Nica Borgese
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Saccharomyces cerevisiae Proteins ,Saccharomyces cerevisiae ,Computational biology ,Biology ,Endoplasmic Reticulum ,Biochemistry ,03 medical and health sciences ,0302 clinical medicine ,Structural Biology ,Genetics ,Homologous chromosome ,Animals ,Guanine Nucleotide Exchange Factors ,Humans ,Molecular Biology ,Cyclophilin ,030304 developmental biology ,computer.programming_language ,Adenosine Triphosphatases ,Smith–Waterman algorithm ,0303 health sciences ,Multiple sequence alignment ,Caml ,Phylum ,Intracellular Membranes ,Cell Biology ,Transmembrane protein ,Cell biology ,computer ,030217 neurology & neurosurgery ,Function (biology) ,Protein Binding - Abstract
The tryptophan rich basic protein/calcium signal-modulating cyclophilin ligand (WRB/CAML) and Get1p/Get2p complexes, in vertebrates and yeast, respectively, mediate the final step of tail-anchored protein insertion into the endoplasmic reticulum membrane via the Get pathway. While WRB appears to exist in all eukaryotes, CAML homologs were previously recognized only among chordates, raising the question as to how CAML's function is performed in other phyla. Furthermore, whereas WRB was recognized as the metazoan homolog of Get1, CAML and Get2, although functionally equivalent, were not considered to be homologous. CAML contains an N-terminal basic, TRC40/Get3-interacting, region, three transmembrane segments near the C-terminus, and a poorly conserved region between these domains. Here, I searched the NCBI protein database for remote CAML homologs in all eukaryotes, using position-specific iterated-basic local alignment search tool, with the C-terminal, the N-terminal or the full-length sequence of human CAML as query. The N-terminal basic region and full-length CAML retrieved homologs among metazoa, plants and fungi. In the latter group several hits were annotated as GET2. The C-terminal query did not return entries outside of the animal kingdom, but did retrieve over one hundred invertebrate metazoan CAML-like proteins, which all conserved the N-terminal TRC40-binding domain. The results indicate that CAML homologs exist throughout the eukaryotic domain of life, and suggest that metazoan CAML and yeast GET2 share a common evolutionary origin. They further reveal a tight link between the particular features of the metazoan membrane-anchoring domain and the TRC40-interacting region. The list of sequences presented here should provide a useful resource for future studies addressing structure-function relationships in CAML proteins.
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- 2020
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4. Author response for 'SEARCHING FOR REMOTE HOMOLOGS OF CAML AMONG EUKARYOTES'
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Nica Borgese
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Caml ,Computational biology ,Biology ,computer ,computer.programming_language - Published
- 2020
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5. Discrimination between the endoplasmic reticulum and mitochondria by spontaneously inserting tail‐anchored proteins
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Sara Francesca Colombo, Bruna Figueiredo Costa, Nica Borgese, and Patrizia Cassella
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0301 basic medicine ,Sec61 ,Mitochondrion ,Biology ,Endoplasmic Reticulum ,medicine.disease_cause ,Biochemistry ,Cell Line ,R-SNARE Proteins ,03 medical and health sciences ,Protein Domains ,Structural Biology ,Chlorocebus aethiops ,Organelle ,Protein targeting ,Genetics ,medicine ,Animals ,Humans ,Molecular Biology ,Endoplasmic reticulum ,Cell Biology ,Transmembrane protein ,Cell biology ,Protein Transport ,Cytosol ,Cytochromes b5 ,030104 developmental biology ,Mitochondrial Membranes ,Bacterial outer membrane ,HeLa Cells - Abstract
Tail-anchored (TA) proteins insert into their target organelles by incompletely elucidated posttranslational pathways. Some TA proteins spontaneously insert into protein-free liposomes, yet target a specific organelle in vivo. Two spontaneously inserting cytochrome b5 forms, b5-ER and b5-RR, which differ only in the charge of the C-terminal region, target the endoplasmic reticulum (ER) or the mitochondrial outer membrane (MOM), respectively. To bridge the gap between the cell-free and in cellula results, we analyzed targeting in digitonin-permeabilized adherent HeLa cells. In the absence of cytosol, the MOM was the destination of both b5 forms, whereas in cytosol the C-terminal negative charge of b5-ER determined targeting to the ER. Inhibition of the transmembrane recognition complex (TRC) pathway only partially reduced b5 targeting, while strongly affecting the classical TRC substrate synaptobrevin 2 (Syb2). To identify additional pathways, we tested a number of small inhibitors, and found that Eeyarestatin I (ESI ) reduced insertion of b5-ER and of another spontaneously inserting TA protein, while not affecting Syb2. The effect was independent from the known targets of ESI , Sec61 and p97/VCP. Our results demonstrate that the MOM is the preferred destination of spontaneously inserting TA proteins, regardless of their C-terminal charge, and reveal a novel, substrate-specific ER-targeting pathway.
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- 2018
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6. Correction: VAPB depletion alters neuritogenesis and phosphoinositide balance in motoneuron-like cells: relevance to VAPB-linked amyotrophic lateral sclerosis (doi:10.1242/jcs.220061)
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Maria Nicol Colombo, Francesca Navone, Sara Francesca Colombo, Nica Borgese, Stefania Marcuzzo, Pia Bernasconi, Rossella Venditti, Maria Antonietta De Matteis, and Paola Genevini
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Motor Neurons ,Amyotrophic Lateral Sclerosis ,Vesicular Transport Proteins ,Clone (cell biology) ,Correction ,Golgi Apparatus ,Cell Biology ,VAPB ,Biology ,Endoplasmic Reticulum ,Phosphatidylinositols ,medicine.disease ,Rats ,Cell biology ,Mutation ,Neurites ,medicine ,Animals ,Humans ,Amyotrophic lateral sclerosis ,HeLa Cells - Abstract
VAPB and VAPA are ubiquitously expressed endoplasmic reticulum membrane proteins that play key roles in lipid exchange at membrane contact sites. A mutant, aggregation-prone, form of VAPB (P56S) is linked to a dominantly inherited form of amyotrophic lateral sclerosis; however, it has been unclear whether its pathogenicity is due to toxic gain of function, to negative dominance, or simply to insufficient levels of the wild-type protein produced from a single allele (haploinsufficiency). To investigate whether reduced levels of functional VAPB, independently from the presence of the mutant form, affect the physiology of mammalian motoneuron-like cells, we generated NSC34 clones, from which VAPB was partially or nearly completely depleted. VAPA levels, determined to be over fourfold higher than those of VAPB in untransfected cells, were unaffected. Nonetheless, cells with even partially depleted VAPB showed an increase in Golgi- and acidic vesicle-localized phosphatidylinositol-4-phosphate (PI4P) and reduced neurite extension when induced to differentiate. Conversely, the PI4 kinase inhibitors PIK93 and IN-10 increased neurite elongation. Thus, for long-term survival, motoneurons might require the full dose of functional VAPB, which may have unique function(s) that VAPA cannot perform.
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- 2019
7. The Ways of Tails: the GET Pathway and more
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Javier Coy-Vergara, Nica Borgese, Blanche Schwappach, and Sara Francesca Colombo
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Signal peptide ,Sec61 ,Saccharomyces cerevisiae Proteins ,Computer science ,ved/biology.organism_classification_rank.species ,Bioengineering ,Computational biology ,Saccharomyces cerevisiae ,Biochemistry ,Analytical Chemistry ,03 medical and health sciences ,Mice ,Animals ,Humans ,Model organism ,Topology (chemistry) ,030304 developmental biology ,0303 health sciences ,ved/biology ,030302 biochemistry & molecular biology ,Organic Chemistry ,Cell Membrane ,Membrane Proteins ,In vivo analysis ,Translocon ,Protein Transport ,Protein Processing, Post-Translational ,Signal Recognition Particle - Abstract
Due to their topology tail-anchored (TA) proteins must target to the membrane independently of the co-translational route defined by the signal sequence recognition particle (SRP), its receptor and the translocon Sec61. More than a decade of work has extensively characterized a highly conserved pathway, the yeast GET or mammalian TRC40 pathway, which is capable of countering the biogenetic challenge posed by the C-terminal TA anchor. In this review we briefly summarize current models of this targeting route and focus on emerging aspects such as the intricate interplay with the proteostatic network of cells and with other targeting pathways. Importantly, we consider the lessons provided by the in vivo analysis of the pathway in different model organisms and by the consideration of its full client spectrum in more recent studies. This analysis of the state of the field highlights directions in which the current models may be experimentally probed and conceptually extended.
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- 2019
8. VAPB depletion alters neuritogenesis and phosphoinositide balance in motoneuron-like cells: relevance to VAPB-linked ALS
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Maria Nicol Colombo, Francesca Navone, Maria Antonietta De Matteis, Stefania Marcuzzo, Paola Genevini, Pia Bernasconi, Rossella Venditti, Nica Borgese, Sara Francesca Colombo, Genevini, Paola, Colombo, Maria Nicol, Venditti, Rossella, Marcuzzo, Stefania, Colombo, Sara Francesca, Bernasconi, Pia, De Matteis, Maria Antonietta, Borgese, Nica, and Navone, Francesca
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Phosphatidylinositol-4-phosphate ,Phosphatidylinositol 4-phosphate ,Mutant ,Biology ,Neurodegenerative disease ,03 medical and health sciences ,symbols.namesake ,chemistry.chemical_compound ,0302 clinical medicine ,medicine ,Amyotrophic lateral sclerosis ,Neuritogenesi ,030304 developmental biology ,0303 health sciences ,Endoplasmic reticulum membrane ,Kinase ,NSC34 cell ,Cell Biology ,Golgi apparatus ,VAPB ,medicine.disease ,Cell biology ,chemistry ,Endo-lysosome ,symbols ,Haploinsufficiency ,030217 neurology & neurosurgery - Abstract
VAPB and VAPA are ubiquitously expressed endoplasmic reticulum membrane proteins that play key roles in lipid exchange at membrane contact sites. A mutant, aggregation-prone, form of VAPB (P56S) is linked to a dominantly inherited form of amyotrophic lateral sclerosis; however, it has been unclear whether its pathogenicity is due to toxic gain of function, to negative dominance, or simply to insufficient levels of the wild-type protein produced from a single allele (haploinsufficiency). To investigate whether reduced levels of functional VAPB, independently from the presence of the mutant form, affect the physiology of mammalian motoneuron-like cells, we generated NSC34 clones, from which VAPB was partially or nearly completely depleted. VAPA levels, determined to be over fourfold higher than those of VAPB in untransfected cells, were unaffected. Nonetheless, cells with even partially depleted VAPB showed an increase in Golgi- and acidic vesicle-localized phosphatidylinositol-4-phosphate (PI4P) and reduced neurite extension when induced to differentiate. Conversely, the PI4 kinase inhibitors PIK93 and IN-10 increased neurite elongation. Thus, for long-term survival, motoneurons might require the full dose of functional VAPB, which may have unique function(s) that VAPA cannot perform.
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- 2019
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9. Mutant VAPB: Culprit or Innocent Bystander of Amyotrophic Lateral Sclerosis?
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Francesca Navone, Nobuyuki Nukina, Tomoyuki Yamanaka, and Nica Borgese
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0301 basic medicine ,Mutation ,business.industry ,Mutant ,Neurodegeneration ,General Medicine ,VAPB ,Motor neuron ,medicine.disease_cause ,medicine.disease ,Serine ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,medicine ,Bystander effect ,Cancer research ,Amyotrophic lateral sclerosis ,business ,030217 neurology & neurosurgery - Abstract
Nearly twenty years ago a mutation in the VAPB gene, resulting in a proline to serine substitution (p.P56S), was identified as the cause of a rare, slowly progressing, familial form of the motor neuron degenerative disease Amyotrophic Lateral Sclerosis (ALS). Since then, progress in unravelling the mechanistic basis of this mutation has proceeded in parallel with research on the VAP proteins and on their role in establishing membrane contact sites between the ER and other organelles. Analysis of the literature on cellular and animal models reviewed here supports the conclusion that P56S-VAPB, which is aggregation-prone, non-functional and unstable, is expressed at levels that are insufficient to support toxic gain-of-function or dominant negative effects within motor neurons. Instead, insufficient levels of the product of the single wild-type allele appear to be required for pathological effects, and may be the main driver of the disease. In light of the multiple interactions of the VAP proteins, we address the consequences of specific VAPB depletion and highlight various affected processes that could contribute to motor neuron degeneration. In the future, distinction of specific roles of each of the two VAP paralogues should help to further elucidate the basis of p.P56S familial ALS, as well as of other more common forms of the disease.
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- 2021
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10. Tail-anchored Protein Insertion in Mammals
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Arianna Crespi, Sara Francesca Colombo, Nica Borgese, Richard F. Bram, Annalisa Maroli, Adriana Vitiello, Silvia Cardani, Roberta Benfante, and Paolo Soffientini
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0301 basic medicine ,Caml ,Protein subunit ,Endoplasmic reticulum ,Cell Biology ,Biology ,medicine.disease_cause ,Biochemistry ,Heterotetramer ,Transmembrane protein ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Membrane protein ,Membrane biogenesis ,Protein targeting ,medicine ,Molecular Biology ,computer ,030217 neurology & neurosurgery ,computer.programming_language - Abstract
The GET (guided entry of tail-anchored proteins)/TRC (transmembrane recognition complex) pathway for tail-anchored protein targeting to the endoplasmic reticulum (ER) has been characterized in detail in yeast and is thought to function similarly in mammals, where the orthologue of the central ATPase, Get3, is known as TRC40 or Asna1. Get3/TRC40 function requires an ER receptor, which in yeast consists of the Get1/Get2 heterotetramer and in mammals of the WRB protein (tryptophan-rich basic protein), homologous to yeast Get1, in combination with CAML (calcium-modulating cyclophilin ligand), which is not homologous to Get2. To better characterize the mammalian receptor, we investigated the role of endogenous WRB and CAML in tail-anchored protein insertion as well as their association, concentration, and stoichiometry in rat liver microsomes and cultured cells. Functional proteoliposomes, reconstituted from a microsomal detergent extract, lost their activity when made with an extract depleted of TRC40-associated proteins or of CAML itself, whereas in vitro synthesized CAML and WRB together were sufficient to confer insertion competence to liposomes. CAML was found to be in ∼5-fold excess over WRB, and alteration of this ratio did not inhibit insertion. Depletion of each subunit affected the levels of the other one; in the case of CAML silencing, this effect was attributable to destabilization of the WRB transcript and not of WRB protein itself. These results reveal unanticipated complexity in the mutual regulation of the TRC40 receptor subunits and raise the question as to the role of the excess CAML in the mammalian ER.
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- 2016
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11. The GET pathway can increase the risk of mitochondrial outer membrane proteins to be mistargeted to the ER
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Bruna Figueiredo Costa, Daniela G. Vitali, Antonia Kolb, Blanche Schwappach, Nica Borgese, Doron Rapaport, Elianne P. Bulthuis, Christopher Grefen, Anne Clancy, Maya Schuldiner, Susanne Zabel, Ákos Farkas, Monika Sinzel, and Dietmar G. Mehlhorn
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0301 basic medicine ,Saccharomyces cerevisiae Proteins ,Saccharomyces cerevisiae ,Mitochondrion ,Biology ,medicine.disease_cause ,Endoplasmic Reticulum ,Mitochondrial Membrane Transport Proteins ,03 medical and health sciences ,All institutes and research themes of the Radboud University Medical Center ,Protein targeting ,medicine ,Guanine Nucleotide Exchange Factors ,Adenosine Triphosphatases ,Endoplasmic reticulum ,Membrane Proteins ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,Cell Biology ,Yeast ,Cell biology ,Transmembrane domain ,Adaptor Proteins, Vesicular Transport ,Protein Transport ,030104 developmental biology ,Membrane ,Mitochondrial targeting ,Mitochondrial Membranes ,Bacterial outer membrane - Abstract
Tail-anchored (TA) proteins are anchored to their corresponding membrane via a single transmembrane segment (TMS) at their C-terminus. In yeast, the targeting of TA proteins to the endoplasmic reticulum (ER) can be mediated by the guided entry of TA proteins (GET) pathway, whereas it is not yet clear how mitochondrial TA proteins are targeted to their destination. It is widely observed that some mitochondrial outer membrane (OM) proteins are mistargeted to the ER when overexpressed or when their targeting signal is masked. However, the mechanism of this erroneous sorting is currently unknown. In this study, we demonstrate the involvement of the GET machinery in mistargeting of non-optimal mitochondrial OM proteins to the ER. These findings suggest that the GET machinery can, in principle, recognize and guide mitochondrial and non-canonical TA proteins. Hence, under normal conditions, an active mitochondrial targeting pathway must exist that dominates the kinetic competition against other pathways.
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- 2018
12. Membrane Insertion of Tail‐anchored Proteins
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Nica Borgese
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Mitochondrial membrane transport protein ,Membrane protein ,biology ,TRC complex ,Protein targeting ,Peripheral membrane protein ,Translocase of the inner membrane ,biology.protein ,medicine ,Translocon ,medicine.disease_cause ,Integral membrane protein ,Cell biology - Abstract
Tail-anchored proteins are a special class of transmembrane proteins, consisting of a cytosolic domain anchored to the phospholipid bilayer by a single hydrophobic segment adjacent to their most C-terminus. Because of their particular topology, the C-terminal anchor must be inserted into membranes post-translationally by mechanisms that differ from the well-known targeting/translocation co-translational pathway. Recently, several advances have created a new understanding of the tail-anchored protein insertion machinery. Because of the essential cellular roles carried out by tail-anchored proteins, including vesicle fusion, regulation of apoptosis and formation of interorganellar contact sites, uncovering the machinery responsible for their biogenesis should further our ability to understand a wide variety of diseases such as forms of cancer caused by activation of the tail-anchored protein oncogene BCL2. Key Concepts Tail-anchored proteins have C-terminal hydrophobic domains. Tail-anchored proteins are inserted post-translationally into the membrane. The GET complex inserts tail-anchored proteins into the endoplasmic reticulum membrane in yeast. The TRC complex chaperones tail-anchored proteins into endoplasmic reticulum membranes in mammals. The mitochondrial outer membrane appears to be the preferred destination of tail-anchored proteins that fail to engage the GET/TRC complex. Functions of the GET/TRC pathway additional to tail-anchored protein targeting are presently under intense investigation. Keywords: tail-anchored proteins; membrane insertion; GET/TRC; ATPase; endoplasmic reticulum; mitochondria
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- 2015
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13. CAML mediates survival of Myc-induced lymphoma cells independent of tail-anchored protein insertion
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Lonn D. Lindquist, Jennifer C. Shing, Nica Borgese, and Richard J. Bram
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0301 basic medicine ,Cancer Research ,Programmed cell death ,030102 biochemistry & molecular biology ,Caml ,Chemistry ,Endoplasmic reticulum ,Immunology ,Cell Biology ,Cell cycle ,Article ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,030104 developmental biology ,Apoptosis ,Cell culture ,Cancer cell ,Cancer research ,Mitosis ,computer ,computer.programming_language - Abstract
Calcium-modulating cyclophilin ligand (CAML) is an endoplasmic reticulum (ER) protein that functions, along with WRB and TRC40, to mediate tail-anchored (TA) protein insertion into the ER membrane. Physiologic roles for CAML include endocytic trafficking, intracellular calcium signaling, and the survival and proliferation of specialized immune cells, recently attributed to its requirement for TA protein insertion. To identify a possible role for CAML in cancer cells, we generated Eμ-Myc transgenic mice that carry a tamoxifen-inducible deletion allele of Caml. In multiple B-cell lymphoma cell lines derived from these mice, homozygous loss of Caml activated apoptosis. Cell death was blocked by Bcl-2/Bcl-xL overexpression; however, rescue from apoptosis was insufficient to restore proliferation. Tumors established from an Eμ-Myc lymphoma cell line completely regressed after tamoxifen administration, suggesting that CAML is also required for these cancer cells to survive and grow in vivo. Cell cycle analyses of Caml-deleted lymphoma cells revealed an arrest in G2/M, accompanied by low expression of the mitotic marker, phospho-histone H3 (Ser10). Surprisingly, lymphoma cell viability did not depend on the domain of CAML required for its interaction with TRC40. Furthermore, a small protein fragment consisting of the C-terminal 111 amino acid residues of CAML, encompassing the WRB-binding domain, was sufficient to rescue growth and survival of Caml-deleted lymphoma cells. Critically, this minimal region of CAML did not restore TA protein insertion in knockout cells. Taken together, these data reveal an essential role for CAML in supporting survival and mitotic progression in Myc-driven lymphomas that is independent of its TA protein insertion function.
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- 2017
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14. PI(4,5)P2-Dependent and Ca2+-Regulated ER-PM Interactions Mediated by the Extended Synaptotagmins
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Yasunori Saheki, Nica Borgese, Francesca Giordano, Sara Francesca Colombo, Sviatoslav N. Bagriantsev, Elena O. Gracheva, Pietro De Camilli, Michelle Pirruccello, Olof Idevall-Hagren, and Ira Milosevic
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Biochemistry, Genetics and Molecular Biology(all) ,ORAI1 ,Endoplasmic reticulum ,STIM1 ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Cell biology ,Synaptotagmins ,Cell membrane ,medicine.anatomical_structure ,Protein structure ,Cell culture ,medicine ,Peptide sequence - Abstract
Most available information on endoplasmic reticulum (ER)-plasma membrane (PM) contacts in cells of higher eukaryotes concerns proteins implicated in the regulation of Ca(2+) entry. However, growing evidence suggests that such contacts play more general roles in cell physiology, pointing to the existence of additionally ubiquitously expressed ER-PM tethers. Here, we show that the three extended synaptotagmins (E-Syts) are ER proteins that participate in such tethering function via C2 domain-dependent interactions with the PM that require PI(4,5)P2 in the case of E-Syt2 and E-Syt3 and also elevation of cytosolic Ca(2+) in the case of E-Syt1. As they form heteromeric complexes, the E-Syts confer cytosolic Ca(2+) regulation to ER-PM contact formation. E-Syts-dependent contacts, however, are not required for store-operated Ca(2+) entry. Thus, the ER-PM tethering function of the E-Syts (tricalbins in yeast) mediates the formation of ER-PM contacts sites, which are functionally distinct from those mediated by STIM1 and Orai1.
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- 2013
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15. Getting membrane proteins on and off the shuttle bus between the endoplasmic reticulum and the Golgi complex
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Nica Borgese
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0301 basic medicine ,Golgi Apparatus ,Biology ,Endoplasmic Reticulum ,03 medical and health sciences ,symbols.namesake ,Membrane Microdomains ,Animals ,Humans ,COPII ,Secretory pathway ,Secretory Pathway ,Endoplasmic reticulum ,Peripheral membrane protein ,Membrane Proteins ,Cell Biology ,COPI ,Golgi apparatus ,Membrane contact site ,Cell biology ,Protein Transport ,030104 developmental biology ,Membrane protein ,Multiprotein Complexes ,symbols ,COP-Coated Vesicles - Abstract
Secretory proteins exit the endoplasmic reticulum (ER) in coat protein complex II (COPII)-coated vesicles and then progress through the Golgi complex before delivery to their final destination. Soluble cargo can be recruited to ER exit sites by signal-mediated processes (cargo capture) or by bulk flow. For membrane proteins, a third mechanism, based on the interaction of their transmembrane domain (TMD) with lipid microdomains, must also be considered. In this Commentary, I review evidence in favor of the idea that partitioning of TMDs into bilayer domains that are endowed with distinct physico-chemical properties plays a pivotal role in the transport of membrane proteins within the early secretory pathway. The combination of such self-organizational phenomena with canonical intermolecular interactions is most likely to control the release of membrane proteins from the ER into the secretory pathway.
- Published
- 2016
16. Restructured endoplasmic reticulum generated by mutant amyotrophic lateral sclerosis-linked VAPB is cleared by the proteasome
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Matteo Fossati, Roberta Benfante, Giovanni Bertoni, Nica Borgese, Giulia Papiani, Francesca Navone, Andrea Raimondi, Annamaria Ruggiano, and Maura Francolini
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Inclusion Bodies ,Proteasome Endopeptidase Complex ,Endoplasmic reticulum ,Amyotrophic Lateral Sclerosis ,Mutant ,Ubiquitination ,Vesicular Transport Proteins ,Cell Biology ,Biology ,VAPB ,Endoplasmic Reticulum ,Transfection ,Molecular biology ,Inclusion bodies ,AAA proteins ,Cell Line ,Cell biology ,Protein Transport ,Proteasome ,Mutant protein ,Humans ,Intracellular ,HeLa Cells - Abstract
Summary VAPB (vesicle-associated membrane protein-associated protein B) is a ubiquitously expressed, ER-resident tail-anchored protein that functions as adaptor for lipid-exchange proteins. Its mutant form, P56S-VAPB, is linked to a dominantly inherited form of amyotrophic lateral sclerosis (ALS8). P56S-VAPB forms intracellular inclusions, whose role in ALS pathogenesis has not yet been elucidated. We recently demonstrated that these inclusions are formed by profoundly remodelled stacked ER cisternae. Here, we used stable HeLa-TetOff cell lines inducibly expressing wild-type VAPB and P56S-VAPB, as well as microinjection protocols in non-transfected cells, to investigate the dynamics of inclusion generation and degradation. Shortly after synthesis, the mutant protein forms small, polyubiquitinated clusters, which then congregate in the juxtanuclear region independently of the integrity of the microtubule cytoskeleton. The rate of degradation of the aggregated mutant is higher than that of the wild-type protein, so that the inclusions are cleared only a few hours after cessation of P56S-VAPB synthesis. At variance with other inclusion bodies linked to neurodegenerative diseases, clearance of P56S-VAPB inclusions involves the proteasome, with no apparent participation of macro-autophagy. Transfection of a dominant-negative form of the AAA ATPase p97/VCP stabilizes mutant VAPB, suggesting a role for this ATPase in extracting the aggregated protein from the inclusions. Our results demonstrate that the structures induced by P56S-VAPB stand apart from other inclusion bodies, both in the mechanism of their genesis and of their clearance from the cell, with possible implications for the pathogenic mechanism of the mutant protein.
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- 2012
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17. Uncovering Common Principles in Protein Export of Malaria Parasites
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Christof Grüring, Nica Borgese, Jude M. Przyborski, Gianluigi Franci, Sven Flemming, Tim-Wolf Gilberger, Elisa Fasana, Sara Francesca Colombo, Arlett Heiber, Tobias Spielmann, Hendrik G. Stunnenberg, Florian Kruse, and Hanno Schoeler
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Cancer Research ,Plasmodium falciparum ,Protozoan Proteins ,Protein Export ,Chromosomal translocation ,Bioinformatics ,Cleavage (embryo) ,Microbiology ,Phosphatidylinositol Phosphates ,Virology ,Immunology and Microbiology(all) ,medicine ,Animals ,Aspartic Acid Endopeptidases ,Humans ,Parasite hosting ,Malaria, Falciparum ,Molecular Biology ,Protein Unfolding ,biology ,medicine.disease ,biology.organism_classification ,Transmembrane protein ,Cell biology ,N-terminus ,Protein Transport ,Parasitology ,Carrier Proteins ,Malaria - Abstract
SummaryFor proliferation, the malaria parasite Plasmodium falciparum needs to modify the infected host cell extensively. To achieve this, the parasite exports proteins containing a Plasmodium export element (PEXEL) into the host cell. Phosphatidylinositol-3-phosphate binding and cleavage of the PEXEL are thought to mediate protein export. We show that these requirements can be bypassed, exposing a second level of export control in the N terminus generated after PEXEL cleavage that is sufficient to distinguish exported from nonexported proteins. Furthermore, this region also corresponds to the export domain of a second group of exported proteins lacking PEXELs (PNEPs), indicating shared export properties among different exported parasite proteins. Concordantly, export of both PNEPs and PEXEL proteins depends on unfolding, revealing translocation as a common step in export. However, translocation of transmembrane proteins occurs at the parasite plasma membrane, one step before translocation of soluble proteins, indicating unexpectedly complex translocation events at the parasite periphery.
- Published
- 2012
18. The quest for a better resolution of protein‐translocation processes
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Nica Borgese, Doron Rapaport, Arnold J. M. Driessen, Colin Robinson, Groningen Biomolecular Sciences and Biotechnology, Molecular Microbiology, and Zernike Institute for Advanced Materials
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Chromosomal translocation ,Review Article ,Biology ,medicine.disease_cause ,Models, Biological ,motors ,Biochemistry ,translocons ,MITOCHONDRIA ,protein folding ,Three-domain system ,Protein targeting ,Genetics ,medicine ,Protein translocation ,quality control ,Control (linguistics) ,GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries) ,Molecular Biology ,Organism ,signal sequences ,Protein Transport ,Eukaryotic Cells ,Prokaryotic Cells ,Evolutionary biology ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,Ordination - Abstract
The EMBO Conference on the Control, Co‐ordination and Regulation of Protein Targeting and Translocation took place between 25 and 28 October 2008, in Sainte‐Maxime, France, and was organized by T. Pugsley & R. Zimmermann. Credit: Hotel les Jardins de Sainte‐Maxime, France. ![][1] See Glossary for abbreviations used in this article The 2008 European Molecular Biology Organization Conference on the Control, Co‐ordination and Regulation of Protein Targeting and Translocation was held in sunny Sainte‐Maxime, on the Cote d'Azur in Southern France. It brought together almost 200 scientists who work on protein translocation in different organelles, as well as in different kingdoms and domains of life, thereby providing a unique opportunity to discuss commonalities and differences between the operational mechanisms. The conference took place during an interesting time for this field of research. The biological question is as important as ever: how are huge macromolecules transported across membranes that are designed, in many cases, to be impermeable even to protons? Protein translocases have been studied for several decades, and the most famous examples have been subjected to exhaustive biochemical, structural and genetic analyses. Although it is undeniable that these ‘traditional’ approaches are continuing to bear fruit and elucidate the basic translocation processes, it is becoming increasingly evident that, on the whole, protein translocases are not simply machines that grab proteins on one side of the membrane and send them to the other by a standard—but impressive—mechanism. Instead, and as the conference title implies, they are sophisticated systems that can be controlled and adapted to the types of protein substrate being transported, and to the prevailing physiological status of the organism or organelle. Here, we give an account of some of these exciting new areas. For background, Fig 1 shows the key protein translocases under discussion, as well as their evolutionary relationships. Figure 1. The major … [1]: /embed/graphic-1.gif
- Published
- 2009
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19. How tails guide tail-anchored proteins to their destinations
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Nica Borgese, Sara Francesca Colombo, and Silvia Brambillasca
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Membrane transport protein ,Membrane Proteins ,Cell Biology ,Protein Sorting Signals ,Membrane transport ,Biology ,Endoplasmic Reticulum ,Models, Biological ,Transmembrane protein ,Cell biology ,Protein Transport ,Transmembrane domain ,Membrane ,Membrane protein ,Membrane topology ,Membrane biogenesis ,Peroxisomes ,biology.protein ,Animals ,Humans ,Protein Processing, Post-Translational ,Signal Transduction - Abstract
A large group of diverse, functionally important, and differently localized transmembrane proteins shares a particular membrane topology, consisting of a cytosolic N-terminal region, followed by a transmembrane domain close to the C-terminus. Because of their structure, these C-tail-anchored (TA) proteins must insert into all their target membranes by post-translational pathways. Recent work, based on the development of stringent and sensitive biochemical assays, has demonstrated that novel unexplored mechanisms underlie these post-translational targeting and membrane insertion pathways. Unravelling these pathways will shed light on the biosynthesis and regulation of an important group of membrane proteins and is likely to lead to new concepts in the field of membrane biogenesis.
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- 2007
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20. Tail-anchored Protein Insertion in Mammals: FUNCTION AND RECIPROCAL INTERACTIONS OF THE TWO SUBUNITS OF THE TRC40 RECEPTOR
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Sara Francesca Colombo, Silvia Cardani, Annalisa Maroli, Adriana Vitiello, Paolo Soffientini, Arianna Crespi, Richard J. Bram, Roberta Benfante, and Nica Borgese
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Adenosine Triphosphatases ,Saccharomyces cerevisiae Proteins ,Arsenite Transporting ATPases ,Proteolipids ,Nuclear Proteins ,Cell Biology ,Saccharomyces cerevisiae ,Endoplasmic Reticulum ,Biochemistry ,Recombinant Proteins ,Cell Line ,Rats ,Protein Subunits ,Protein Transport ,Gene Expression Regulation ,Microsomes, Liver ,Animals ,Guanine Nucleotide Exchange Factors ,Humans ,Additions and Corrections ,Down Syndrome ,Molecular Biology ,Cells, Cultured ,Adaptor Proteins, Signal Transducing ,HeLa Cells - Abstract
The GET (guided entry of tail-anchored proteins)/TRC (transmembrane recognition complex) pathway for tail-anchored protein targeting to the endoplasmic reticulum (ER) has been characterized in detail in yeast and is thought to function similarly in mammals, where the orthologue of the central ATPase, Get3, is known as TRC40 or Asna1. Get3/TRC40 function requires an ER receptor, which in yeast consists of the Get1/Get2 heterotetramer and in mammals of the WRB protein (tryptophan-rich basic protein), homologous to yeast Get1, in combination with CAML (calcium-modulating cyclophilin ligand), which is not homologous to Get2. To better characterize the mammalian receptor, we investigated the role of endogenous WRB and CAML in tail-anchored protein insertion as well as their association, concentration, and stoichiometry in rat liver microsomes and cultured cells. Functional proteoliposomes, reconstituted from a microsomal detergent extract, lost their activity when made with an extract depleted of TRC40-associated proteins or of CAML itself, whereas in vitro synthesized CAML and WRB together were sufficient to confer insertion competence to liposomes. CAML was found to be in ∼5-fold excess over WRB, and alteration of this ratio did not inhibit insertion. Depletion of each subunit affected the levels of the other one; in the case of CAML silencing, this effect was attributable to destabilization of the WRB transcript and not of WRB protein itself. These results reveal unanticipated complexity in the mutual regulation of the TRC40 receptor subunits and raise the question as to the role of the excess CAML in the mammalian ER.
- Published
- 2015
21. Cell culture models to investigate the selective vulnerability of motoneuronal mitochondria to familial ALS-linked G93ASOD1
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Lavinia Cantoni, Andrea Raimondi, Alessandra Mangolini, Maura Francolini, Nica Borgese, Caterina Bendotti, Silvia Tartari, Silvia Massari, Grazia Pietrini, and M. Rizzardini
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animal diseases ,Cell Respiration ,SOD1 ,Mutant ,Biology ,Mitochondrion ,Gene Expression Regulation, Enzymologic ,Superoxide dismutase ,Mice ,Dogs ,Superoxide Dismutase-1 ,Microscopy, Electron, Transmission ,Cell Line, Tumor ,Neuroblastoma ,medicine ,Animals ,Humans ,Genetic Predisposition to Disease ,Motor Neurons ,Regulation of gene expression ,Superoxide Dismutase ,General Neuroscience ,Amyotrophic Lateral Sclerosis ,nutritional and metabolic diseases ,medicine.disease ,Molecular biology ,Mitochondria ,nervous system diseases ,Cell biology ,nervous system ,Vacuolization ,Cell culture ,Mitochondrial Membranes ,Mutation ,biology.protein - Abstract
Mitochondrial damage induced by superoxide dismutase (SOD1) mutants has been proposed to have a causative role in the selective degeneration of motoneurons in amyotrophic lateral sclerosis (ALS). In order to investigate the basis of the tissue specificity of mutant SOD1 we compared the effect of the continuous expression of wild-type or mutant (G93A) human SOD1 on mitochondrial morphology in the NSC-34 motoneuronal-like, the N18TG2 neuroblastoma and the non-neuronal Madin-Darby Canine Kidney (MDCK) cell lines. Morphological alterations of mitochondria were observed in NSC-34 expressing the G93A mutant (NSC-G93A) but not the wild-type SOD1, whereas a ten-fold greater level of total expression of the mutant had no effect on mitochondria of non-motoneuronal cell lines. Fragmented network, swelling and cristae remodelling but not vacuolization of mitochondria or other intracellular organelles were observed only in NSC-G93A cells. The mitochondrial alterations were not explained by a preferential localization of the mutant within NSC-G93A mitochondria, as a higher amount of the mutant SOD1 was found in mitochondria of MDCK-G93A cells. Our results suggest that mitochondrial vulnerability of motoneurons to G93ASOD1 is recapitulated in NSC-34 cells, and that peculiar features in network dynamics may account for the selective alterations of motoneuronal mitochondria.
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- 2006
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22. Endothelial nitric oxide synthase is segregated from caveolin-1 and localizes to the leading edge of migrating cells
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Clara De Palma, Stefania Bulotta, Andrea Cerullo, Domenicantonio Rotiroti, Rico Barsacchi, Emilio Clementi, and Nica Borgese
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Membrane ruffles ,Nitric Oxide Synthase Type III ,Caveolin 1 ,HeLa TetOff cells ,Caveolae ,Microfilament ,Sensitivity and Specificity ,Cell Movement ,Enos ,Animals ,Humans ,Cytoskeleton ,Cells, Cultured ,Actin ,Microscopy, Confocal ,biology ,Actin cytoskeleton ,Cell Membrane ,Endothelial Cells ,Cell Biology ,biology.organism_classification ,Actins ,Cell biology ,Cattle ,Intracellular ,HeLa Cells - Abstract
The enzyme endothelial Nitric Oxide Synthase (eNOS) is involved in key physiological and pathological processes, including cell motility and apoptosis. It is widely believed that at the cell surface eNOS is localized in caveolae, where caveolin-1 negatively regulates its activity, however, there are still uncertainties on its intracellular distribution. Here, we applied high resolution confocal microscopy to investigate the surface distribution of eNOS in transfected HeLa cells and in human umbilical vein endothelial cells (HUVEC) endogenously expressing the enzyme. In confluent and non-confluent HUVEC and HeLa cells, we failed to detect substantial colocalization between eNOS and caveolin-1 at the cell surface. Instead, in non-confluent cells, eNOS was concentrated in ruffles and at the leading edge of migrating cells, colocalizing with actin filaments and with the raft marker ganglioside G(M1), and well segregated from caveolin-1, which was restricted to the posterior region of the cells. Treatments that disrupted microfilaments caused loss of eNOS from the cell surface and decreased Ca(2+)-stimulated activity, suggesting a role of the cytoskeleton in the localization and function of the enzyme. Our results provide a morphological correlate for the role of eNOS in cell migration and raise questions on the site of interaction between eNOS and caveolin-1.
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- 2006
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23. Two tail-anchored protein variants, differing in transmembrane domain length and intracellular sorting, interact differently with lipids
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Paolo Ceppi, Massimo Masserini, Francesca Raimondo, Nica Borgese, Maura Francolini, Sara Francesca Colombo, Ceppi, P, Colombo, S, Francolini, M, Raimondo, F, Borgese, N, and Masserini, M
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Lipid Bilayers ,Molecular Sequence Data ,Fluorescence ,cytochrome b5, differential scanning calorimetry, endoplasmic reticulum, lipid domains, liposomes ,Cell membrane ,chemistry.chemical_compound ,Protein structure ,medicine ,Amino Acid Sequence ,Lipid bilayer ,POPC ,Liposome ,Multidisciplinary ,Calorimetry, Differential Scanning ,Chemistry ,Endoplasmic reticulum ,Bilayer ,Cell Membrane ,technology, industry, and agriculture ,Biological Sciences ,BIO/10 - BIOCHIMICA ,Lipids ,Protein Structure, Tertiary ,Transmembrane domain ,Cytochromes b5 ,medicine.anatomical_structure ,Biochemistry ,Liposomes ,Phosphatidylcholines ,Biophysics ,lipids (amino acids, peptides, and proteins) - Abstract
C-tail-anchored (TA) proteins often require a transmembrane domain of moderate hydrophobicity to maintain their endoplasmic reticulum residence, but the suggested role of protein-lipid interactions in this phenomenon has not been established. Here, we studied the interaction of TA proteins with lipids by differential scanning calorimetry by using a model system consisting of liposomes embedding either of two forms of cytochrome b 5 : the endoplasmic reticulum-resident wild-type (b 5 wt) and a mutant thereof (b 5 ext), that contains five extra nonpolar amino acids in its transmembrane domain and, therefore, reaches the plasma membrane. The proteins were incorporated into liposomes of palmitoyl-oleyl-phosphatidylcholine (POPC) or POPC mixed with either distearoyl-phosphatidylserine (DSPS), palmitoyl-oleyl-phosphatidylserine (POPS), distearoyl-phosphatidylcholine (DSPC), or C16-ceramide (CER). POPC liposomes displayed a single thermotropic transition centered at -3.4°C. When present, the second lipid formed a domain within the POPC bilayer, as indicated by the appearance of an additional peak. This peak was centered at temperatures close to 0°C in the case of liposomes containing 10% CER, DSPS, and POPS and at 23°C in the case of DSPC, likely reflecting a higher degree of molecular packing for DSPC domains. In DSPS/POPC, POPS/POPC, or CER/POPC, but not in DSPC/POPC liposomes, the insertion of b 5 wt increased, whereas b 5 ext decreased, the relative contribution to the total enthalpy of the higher temperature, phase-separated component. These results were confirmed with fluorescence measurements by using pyrene-labeled phospholipids. The dissimilar interaction with lipids of these two differently localized TA proteins could have implications for their intracellular sorting.
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- 2005
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24. Transmembrane topogenesis of a tail-anchored protein is modulated by membrane lipid composition
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Silvia Brambillasca, Paolo Soffientini, Monica Yabal, Nica Borgese, Ramanujan S. Hegde, Sandra Stefanovic, and Marja Makarow
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Swine ,Proteolipids ,Membrane lipids ,Biology ,medicine.disease_cause ,Article ,General Biochemistry, Genetics and Molecular Biology ,Membrane Lipids ,Dogs ,Protein targeting ,medicine ,Animals ,Humans ,Molecular Biology ,General Immunology and Microbiology ,General Neuroscience ,Peripheral membrane protein ,Membrane Proteins ,RNA-Binding Proteins ,Intracellular Membranes ,Transmembrane protein ,Protein Structure, Tertiary ,Transport protein ,Cell biology ,Protein Transport ,Transmembrane domain ,Cytochromes b5 ,Membrane ,Membrane protein ,Molecular Chaperones - Abstract
A large class of proteins with cytosolic functional domains is anchored to selected intracellular membranes by a single hydrophobic segment close to the C-terminus. Although such tail-anchored (TA) proteins are numerous, diverse, and functionally important, the mechanism of their transmembrane insertion and the basis of their membrane selectivity remain unclear. To address this problem, we have developed a highly specific, sensitive, and quantitative in vitro assay for the proper membrane-spanning topology of a model TA protein, cytochrome b5 (b5). Selective depletion from membranes of components involved in cotranslational protein translocation had no effect on either the efficiency or topology of b5 insertion. Indeed, the kinetics of transmembrane insertion into protein-free phospholipid vesicles was the same as for native ER microsomes. Remarkably, loading of either liposomes or microsomes with cholesterol to levels found in other membranes of the secretory pathway sharply and reversibly inhibited b5 transmembrane insertion. These results identify the minimal requirements for transmembrane topogenesis of a TA protein and suggest that selectivity among various intracellular compartments can be imparted by differences in their lipid composition.
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- 2005
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25. N-myristoylation determines dual targeting of mammalian NADH-cytochrome b(5) reductase to ER and mitochondrial outer membranes by a mechanism of kinetic partitioning
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Stefano Alcaro, Nica Borgese, Sara Francesca Colombo, Francesco Ortuso, Renato Longhi, Adriano Flora, and Teresa Sprocati
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Cytochrome-B(5) Reductase ,Protein Conformation ,Fluorescent Antibody Technique ,Biology ,Endoplasmic Reticulum ,Transfection ,medicine.disease_cause ,Myristic Acid ,Article ,Dogs ,Protein structure ,Protein targeting ,protein targeting ,medicine ,Animals ,membrane protein ,RNA, Messenger ,Research Articles ,Myristoylation ,Signal recognition particle ,Endoplasmic reticulum ,Cell Biology ,N-Myristoylation ,Mitochondria ,Cell biology ,Protein Transport ,Bacterial outer membrane ,Signal Recognition Particle ,Post-translational modifications - Abstract
Mammalian NADH-cytochrome b(5) reductase (b5R) is an N-myristoylated protein that is dually targeted to ER and mitochondrial outer membranes. The N-linked myristate is not required for anchorage to membranes because a stretch of hydrophobic amino acids close to the NH2 terminus guarantees a tight interaction of the protein with the phospholipid bilayer. Instead, the fatty acid is required for targeting of b5R to mitochondria because a nonmyristoylated mutant is exclusively localized to the ER. Here, we have investigated the mechanism by which N-linked myristate affects b5R targeting. We find that myristoylation interferes with interaction of the nascent chain with signal recognition particle, so that a portion of the nascent chains escapes from cotranslational integration into the ER and can be post-translationally targeted to the mitochondrial outer membrane. Thus, competition between two cotranslational events, binding of signal recognition particle and modification by N-myristoylation, determines the site of translation and the localization of b5R.
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- 2005
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26. Biogenesis of tail-anchored proteins
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Silvia Brambillasca, Marja Makarow, Monica Yabal, Nica Borgese, and Paolo Soffientini
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0303 health sciences ,biology ,Membrane transport protein ,Endoplasmic reticulum ,Peripheral membrane protein ,Membrane Proteins ,Protein Sorting Signals ,medicine.disease_cause ,Translocon ,Biochemistry ,Transport protein ,Cell biology ,Protein Transport ,03 medical and health sciences ,0302 clinical medicine ,Membrane protein ,Protein targeting ,biology.protein ,medicine ,Protein Processing, Post-Translational ,Integral membrane protein ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
A group of integral membrane proteins, known as C-tail anchored, is defined by the presence of a cytosolic N-terminal domain that is anchored to the phospholipid bilayer by a single segment of hydrophobic amino acids close to the C-terminus. The mode of insertion into membranes of these proteins, many of which play key roles in fundamental intracellular processes, is obligatorily post-translational, is highly specific and may be subject to regulatory processes that modulate the protein's function. Recent work has demonstrated that tail-anchored proteins translocate their C-termini across the endoplasmic reticulum membrane by a mechanism different from that used for Sec61-dependent post-translational signal-peptide-driven translocation. Here we summarize recent results on the insertion of tail-anchored proteins and discuss possible mechanisms that could be involved.
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- 2003
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27. Formation of stacked ER cisternae by low affinity protein interactions
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Jennifer Lippincott-Schwartz, Nica Borgese, Sara Francesca Colombo, Erik L. Snapp, Ramanujan S. Hegde, Emanuela Pedrazzini, Francesca Lombardo, and Maura Francolini
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Recombinant Fusion Proteins ,Green Fluorescent Proteins ,Biology ,Endoplasmic Reticulum ,Models, Biological ,Article ,endoplasmic reticulum ,photobleaching ,cytochrome b5 ,GFP ,FRAP ,Cell Line ,Protein–protein interaction ,Green fluorescent protein ,Chlorocebus aethiops ,Animals ,Point Mutation ,Luminescent Proteins ,COS cells ,Endoplasmic reticulum ,Membrane Proteins ,Intracellular Membranes ,Cell Biology ,Endoplasmic Reticulum, Smooth ,Protein Structure, Tertiary ,Cell biology ,Membrane protein ,Cytoplasm ,COS Cells ,Biogenesis - Abstract
The endoplasmic reticulum (ER) can transform from a network of branching tubules into stacked membrane arrays (termed organized smooth ER [OSER]) in response to elevated levels of specific resident proteins, such as cytochrome b(5). Here, we have tagged OSER-inducing proteins with green fluorescent protein (GFP) to study OSER biogenesis and dynamics in living cells. Overexpression of these proteins induced formation of karmellae, whorls, and crystalloid OSER structures. Photobleaching experiments revealed that OSER-inducing proteins were highly mobile within OSER structures and could exchange between OSER structures and surrounding reticular ER. This indicated that binding interactions between proteins on apposing stacked membranes of OSER structures were not of high affinity. Addition of GFP, which undergoes low affinity, antiparallel dimerization, to the cytoplasmic domains of non–OSER-inducing resident ER proteins was sufficient to induce OSER structures when overexpressed, but addition of a nondimerizing GFP variant was not. These results point to a molecular mechanism for OSER biogenesis that involves weak homotypic interactions between cytoplasmic domains of proteins. This mechanism may underlie the formation of other stacked membrane structures within cells.
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- 2003
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28. The tale of tail-anchored proteins
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Sara Francesca Colombo, Nica Borgese, and Emanuela Pedrazzini
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chemistry.chemical_classification ,Peripheral membrane protein ,Cell Biology ,Biology ,Protein subcellular localization prediction ,Cell biology ,Amino acid ,Cell membrane ,Protein structure ,medicine.anatomical_structure ,chemistry ,Membrane protein ,medicine ,Lipid bilayer ,Integral membrane protein - Abstract
A group of integral membrane proteins, known as C-tail anchored, is defined by the presence of a cytosolic NH2-terminal domain that is anchored to the phospholipid bilayer by a single segment of hydrophobic amino acids close to the COOH terminus. The mode of insertion into membranes of these proteins, many of which play key roles in fundamental intracellular processes, is obligatorily posttranslational, is highly specific, and may be subject to regulatory processes that modulate the protein's function. Although recent work has elucidated structural features in the tail region that determine selection of the correct target membrane, the molecular machinery involved in interpreting this information, and in modulating tail-anchored protein localization, has not been identified yet.
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- 2003
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29. Activation of Endothelial Nitric-Oxide Synthase by Tumor Necrosis Factor-α: A Novel Pathway Involving Sequential Activation of Neutral Sphingomyelinase, Phosphatidylinositol-3′ kinase, and Akt
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Stefania Bulotta, Salvador Moncada, Rico Barsacchi, Emilio Clementi, Nica Borgese, and Cristiana Perrotta
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Ceramide ,Nitric Oxide Synthase Type III ,Protein Serine-Threonine Kinases ,Phosphatidylinositol 3-Kinases ,chemistry.chemical_compound ,Enos ,Proto-Oncogene Proteins ,medicine ,Humans ,Phosphatidylinositol ,Protein kinase B ,Cells, Cultured ,PI3K/AKT/mTOR pathway ,Pharmacology ,biology ,Tumor Necrosis Factor-alpha ,Kinase ,biology.organism_classification ,Cell biology ,Enzyme Activation ,Sphingomyelin Phosphodiesterase ,chemistry ,Molecular Medicine ,Phosphorylation ,Nitric Oxide Synthase ,Acid sphingomyelinase ,Proto-Oncogene Proteins c-akt ,HeLa Cells ,medicine.drug - Abstract
Activation of endothelial nitric-oxide synthase (eNOS) has been shown to occur through various pathways involving increases in the cytosolic Ca(2+) concentration, activation of the phosphatidylinositol-3' kinase/Akt pathway, as well as regulation by other kinases and by protein-protein interactions. We have recently reported that eNOS, expressed in an inducible HeLa Tet-off cell line, is activated by tumor necrosis factor-alpha (TNF-alpha) in a previously undescribed pathway that involves the lipid messenger ceramide. We have now characterized this pathway. We report here that eNOS activation in response to TNF-alpha correlated with phosphorylation of Akt at Ser 473 and of eNOS itself at Ser 1179. Akt and eNOS phosphorylation, as well as eNOS activation, were blocked by inhibitors of both phosphatidylinositol-3' kinase and neutral sphingomyelinase. In contrast, although acid sphingomyelinase was also stimulated by TNF-alpha, its inhibition was without effect. The activation of neutral sphingomyelinase triggered by TNF-alpha was insensitive to phosphatidylinositol-3' kinase inhibitors. Taken together, these results indicate that eNOS activation by TNF-alpha occurs through sequential activation of neutral sphingomyelinase and of the phosphatidylinositol-3' kinase/Akt pathway. The time course of eNOS activation induced through this pathway was markedly different from that triggered by ATP and epidermal growth factor, which activate eNOS through an increase in intracellular Ca(2+) concentration and through a sphingomyelinase-independent stimulation of the phosphatidylinositol-3' kinase/Akt pathway, respectively. The novel pathway of activation of eNOS described here may have broad biological relevance because neutral sphingomyelinase is activated not only by TNF-alpha but also by a variety of other physiological and pathological stimuli.
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- 2003
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30. Translocation of the C Terminus of a Tail-anchored Protein across the Endoplasmic Reticulum Membrane in Yeast Mutants Defective in Signal Peptide-driven Translocation
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Nica Borgese, Monica Yabal, Paolo Soffientini, Marja Makarow, Emanuela Pedrazzini, and Silvia Brambillasca
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Signal peptide ,Glycosylation ,Saccharomyces cerevisiae Proteins ,Genotype ,Molecular Sequence Data ,Mutant ,Chromosomal translocation ,Saccharomyces cerevisiae ,Protein Sorting Signals ,Biology ,Endoplasmic Reticulum ,Biochemistry ,03 medical and health sciences ,Cytosol ,Amino Acid Sequence ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,Endoplasmic reticulum ,C-terminus ,030302 biochemistry & molecular biology ,Intracellular Membranes ,Cell Biology ,Translocon ,Peptide Fragments ,Recombinant Proteins ,Transmembrane protein ,Cell biology ,Protein Transport ,Cytochromes b5 ,Gene Deletion - Abstract
C-tail-anchored proteins are defined by an N-terminal cytosolic domain followed by a transmembrane anchor close to the C terminus. Their extreme C-terminal polar residues are translocated across membranes by poorly understood post-translational mechanism(s). Here we have used the yeast system to study translocation of the C terminus of a tagged form of mammalian cytochrome b(5), carrying an N-glycosylation site in its C-terminal domain (b(5)-Nglyc). Utilization of this site was adopted as a rigorous criterion for translocation across the ER membrane of yeast wild-type and mutant cells. The C terminus of b(5)-Nglyc was rapidly glycosylated in mutants where Sec61p was defective and incapable of translocating carboxypeptidase Y, a well known substrate for post-translational translocation. Likewise, inactivation of several other components of the translocon machinery had no effect on b(5)-Nglyc translocation. The kinetics of translocation were faster for b(5)-Nglyc than for a signal peptide-containing reporter. Depletion of the cellular ATP pool to a level that retarded Sec61p-dependent post-translational translocation still allowed translocation of b(5)-Nglyc. Similarly, only low ATP concentrations (below 1 microm), in addition to cytosolic protein(s), were required for in vitro translocation of b(5)-Nglyc into mammalian microsomes. Thus, translocation of tail-anchored b(5)-Nglyc proceeds by a mechanism different from that of signal peptide-driven post-translational translocation.
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- 2003
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31. A positive signal prevents secretory membrane cargo from recycling between the Golgi and the ER
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Sara Francesca Colombo, Matteo Fossati, and Nica Borgese
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Golgi Apparatus ,Biology ,Protein Sorting Signals ,Endoplasmic Reticulum ,General Biochemistry, Genetics and Molecular Biology ,Cell Line ,symbols.namesake ,Viral Proteins ,Animals ,Humans ,Molecular Biology ,Secretory pathway ,Glycoproteins ,General Immunology and Microbiology ,General Neuroscience ,Endoplasmic reticulum ,Secretory Vesicles ,Articles ,Golgi apparatus ,Membrane transport ,Secretory Vesicle ,Transport protein ,Cell biology ,Rats ,Protein Transport ,Membrane protein ,Axoplasmic transport ,symbols - Abstract
The Golgi complex and ER are dynamically connected by anterograde and retrograde trafficking pathways. To what extent and by what mechanism outward-bound cargo proteins escape retrograde trafficking has been poorly investigated. Here, we analysed the behaviour of several membrane proteins at the ER/Golgi interface in live cells. When Golgi-to-plasma membrane transport was blocked, vesicular stomatitis virus glycoprotein (VSVG), which bears an ER export signal, accumulated in the Golgi, whereas an export signal-deleted version of VSVG attained a steady state determined by the balance of retrograde and anterograde traffic. A similar behaviour was displayed by EGF receptor and by a model tail-anchored protein, whose retrograde traffic was slowed by addition of VSVG's export signal. Retrograde trafficking was energy- and Rab6-dependent, and Rab6 inhibition accelerated signal-deleted VSVG's transport to the cell surface. Our results extend the dynamic bi-directional relationship between the Golgi and ER to include surface-directed proteins, uncover an unanticipated role for export signals at the Golgi complex, and identify recycling as a novel factor that regulates cargo transport out of the early secretory pathway.
- Published
- 2014
32. Visualization of Endoplasmic Reticulum Subdomains in Cultured Cells
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Sara Francesca Colombo, Matteo Fossati, Nica Borgese, and Maura Francolini
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General Chemical Engineering ,Green Fluorescent Proteins ,Biology ,Endoplasmic Reticulum ,Transfection ,Microbiology ,General Biochemistry, Genetics and Molecular Biology ,Microscopy, Electron, Transmission ,Organelle ,Chlorocebus aethiops ,Animals ,Cells, Cultured ,Fluorescence loss in photobleaching ,Microscopy, Confocal ,General Immunology and Microbiology ,Endoplasmic reticulum ,General Neuroscience ,Lipid microdomain ,Fluorescence recovery after photobleaching ,Protein subcellular localization prediction ,Fusion protein ,Cell biology ,Rats ,COS Cells ,Fluorescence Recovery After Photobleaching - Abstract
The lipids and proteins in eukaryotic cells are continuously exchanged between cell compartments, although these retain their distinctive composition and functions despite the intense interorganelle molecular traffic. The techniques described in this paper are powerful means of studying protein and lipid mobility and trafficking in vivo and in their physiological environment. Fluorescence recovery after photobleaching (FRAP) and fluorescence loss in photobleaching (FLIP) are widely used live-cell imaging techniques for studying intracellular trafficking through the exo-endocytic pathway, the continuity between organelles or subcompartments, the formation of protein complexes, and protein localization in lipid microdomains, all of which can be observed under physiological and pathological conditions. The limitations of these approaches are mainly due to the use of fluorescent fusion proteins, and their potential drawbacks include artifactual over-expression in cells and the possibility of differences in the folding and localization of tagged and native proteins. Finally, as the limit of resolution of optical microscopy (about 200 nm) does not allow investigation of the fine structure of the ER or the specific subcompartments that can originate in cells under stress (i.e. hypoxia, drug administration, the over-expression of transmembrane ER resident proteins) or under pathological conditions, we combine live-cell imaging of cultured transfected cells with ultrastructural analyses based on transmission electron microscopy.
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- 2014
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33. Targeting of a Tail-anchored Protein to Endoplasmic Reticulum and Mitochondrial Outer Membrane by Independent but Competing Pathways
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Sara Francesca Colombo, Ilaria Gazzoni, Emanuela Pedrazzini, Nica Borgese, and Massimo Barberi
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Glycosylation ,Recombinant Fusion Proteins ,Immunoblotting ,Molecular Sequence Data ,Biology ,Cell Fractionation ,Endoplasmic Reticulum ,Article ,Amidohydrolases ,Cell Line ,Green fluorescent protein ,Protein structure ,Genes, Reporter ,Animals ,Humans ,Peptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine Amidase ,Protein Isoforms ,Amino Acid Sequence ,Organic Chemicals ,Molecular Biology ,Peptide sequence ,Fluorescent Dyes ,Endoplasmic reticulum ,C-terminus ,Membrane Proteins ,Intracellular Membranes ,Cell Biology ,Precipitin Tests ,Mitochondria ,Protein Structure, Tertiary ,Transport protein ,Cell biology ,Protein Transport ,Transmembrane domain ,Cytochromes b5 ,Membrane protein ,Biochemistry - Abstract
Many mitochondrial outer membrane (MOM) proteins have a transmembrane domain near the C terminus and an N-terminal cytosolic moiety. It is not clear how these tail-anchored (TA) proteins posttranslationally select their target, but C-terminal charged residues play an important role. To investigate how discrimination between MOM and endoplasmic reticulum (ER) occurs, we used mammalian cytochrome b5, a TA protein existing in two, MOM or ER localized, versions. Substitution of the seven C-terminal residues of the ER isoform or of green fluorescent protein reporter constructs with one or two arginines resulted in MOM-targeted proteins, whereas a single C-terminal threonine caused promiscuous localization. To investigate whether targeting to MOM occurs from the cytosol or after transit through the ER, we tagged a MOM-directed construct with a C-terminal N-glycosylation sequence. Although in vitro this construct was efficiently glycosylated by microsomes, the protein expressed in vivo localized almost exclusively to MOM, and was nearly completely unglycosylated. The small fraction of glycosylated protein was in the ER and was not a precursor to the unglycosylated form. Thus, targeting occurs directly from the cytosol. Moreover, ER and MOM compete for the same polypeptide, explaining the dual localization of some TA proteins.
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- 2001
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34. Activation of the Endothelial Nitric-oxide Synthase by Tumor Necrosis Factor-α
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Domenicantonio Rotiroti, Emilio Clementi, Stefania Bulotta, Rico Barsacchi, and Nica Borgese
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Ceramide ,Programmed cell death ,medicine.medical_treatment ,Cell Biology ,Biology ,Vascular endothelial growth inhibitor ,Biochemistry ,Cell biology ,Nitric oxide ,chemistry.chemical_compound ,Cytokine ,chemistry ,Apoptosis ,medicine ,Tumor necrosis factor alpha ,Signal transduction ,Molecular Biology - Abstract
Cell death via apoptosis induced by tumor necrosis factor-α (TNF-α) plays an important role in many physiological and pathological conditions. The signal transduction pathway activated by this cytokine is known to be regulated by several intracellular messengers. In particular, in many systems nitric oxide (NO) has been shown to protect cells from TNF-α-induced apoptosis. However, whether NO can be generated by the cytokine to down-regulate its own apoptotic program has never been studied. We have addressed this question in HeLa Tet-off cell clones stably transfected with the endothelial NO synthase under a tetracycline-responsive promoter. Endothelial NO synthase, induced about 100-fold in these cells by removal of the antibiotic, retained the characteristics of the native enzyme of endothelial cells, both in terms of intracellular localization and functional activity. Expression of the endothelial NO synthase was sufficient to protect from TNF-α-induced apoptosis. This protection was mediated by the generation of NO. TNF-α itself stimulated endothelial NO synthase activity to generate NO through a pathway involving its lipid messenger, ceramide. Our results identify a novel mechanism of regulation of a signal transduction pathway activated by death receptors and suggest that NO may constitute a built-in mechanism by which TNF-α controls its own apoptotic program.
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- 2001
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35. An Erythroid-Specific Transcript Generates the Soluble Form of NADH-Cytochrome b5 Reductase in Humans
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Nica Borgese, Alessandra Bulbarelli, M. Domenica Cappellini, Marcella DeSilvestris, Alessandra Valentini, Bulbarelli, A, Valentini, A, Desilvestris, M, Cappellini, M, and Borgese, N
- Subjects
Cytochrome-B(5) Reductase ,DNA, Complementary ,Erythrocytes ,Transcription, Genetic ,Molecular Sequence Data ,Immunology ,Biology ,Reductase ,HeLa Cell ,Transfection ,Biochemistry ,Exon ,Start codon ,Erythroblast ,Animals ,Humans ,Amino Acid Sequence ,Cytochrome Reductase ,Gene ,Cytochrome Reductases ,Cytochrome b5 reductase ,Animal ,Cell Differentiation ,Cell Biology ,Hematology ,Rats ,Erythrocyte ,Rat ,Biogenesis ,Human ,HeLa Cells - Abstract
Two forms of NADH-cytochrome b5 reductase (b5R), an erythrocyte-restricted soluble form, active in methemoglobin reduction, and a ubiquitous membrane-associated form involved in lipid metabolism, are produced from one gene. In the rat, the two forms are generated from alternative transcripts differing in the first exon, however, biogenesis of human b5R was less understood. Recently, two different transcripts (M and S), differing in the first exon were also described in humans. Here, we have investigated the tissue-specificity and the role of the S-transcript in the generation of soluble b5R. By RNase protection assays designed to simultaneously detect alternative b5R transcripts in the same sample, the S transcript was undetectable in nonerythroid and in erythroleukemic K562 cells induced to differentiate, but was present in terminal erythroblast cultures, and represented a major b5R transcript in reticulocytes. Analysis of the translation products of the M- and S-transcripts in HeLa cells transfected with the corresponding cDNAs demonstrated that the S-transcript generates soluble b5R, presumably from an internal initiation codon. Our results indicate that the S-transcript is expressed at late stages of erythroid maturation to generate soluble b5R.
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- 1998
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36. Chronic deficiency of nitric oxide affects hypoxia inducible factor-1α (HIF-1α) stability and migration in human endothelial cells
- Author
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Enzo Nisoli, Maria Grazia Cattaneo, Lucia M. Vicentini, Roberta Benfante, Elisa Cappellini, Nica Borgese, Fausta Omodeo-Salè, and Maurizio Ragni
- Subjects
Senescence ,Vascular Endothelial Growth Factor A ,Endothelium ,Nitric Oxide Synthase Type III ,lcsh:Medicine ,Apoptosis ,Nitric Oxide ,Cardiovascular ,Umbilical vein ,Nitric oxide ,chemistry.chemical_compound ,Cell Movement ,Vascular Biology ,Molecular Cell Biology ,medicine ,Humans ,Signaling in Cellular Processes ,Nitric Oxide Donors ,Gene Silencing ,Endothelial dysfunction ,lcsh:Science ,Biology ,Cells, Cultured ,Multidisciplinary ,Chemistry ,lcsh:R ,Endothelial Cells ,Neurochemistry ,medicine.disease ,Hypoxia-Inducible Factor 1, alpha Subunit ,Vascular endothelial growth factor A ,medicine.anatomical_structure ,NG-Nitroarginine Methyl Ester ,Hypoxia-inducible factors ,Immunology ,cardiovascular system ,Cancer research ,Medicine ,lcsh:Q ,Endothelium, Vascular ,Cellular Types ,Neurochemicals ,Signal Transduction ,Research Article ,Neuroscience - Abstract
BACKGROUND: Endothelial dysfunction in widely diffuse disorders, such as atherosclerosis, hypertension, diabetes and senescence, is associated with nitric oxide (NO) deficiency. Here, the behavioural and molecular consequences deriving from NO deficiency in human umbilical vein endothelial cells (HUVECs) were investigated. RESULTS: Endothelial nitric oxide synthase (eNOS) was chronically inhibited either by N(G)-Nitro-L-arginine methyl ester (L-NAME) treatment or its expression was down-regulated by RNA interference. After long-term L-NAME treatment, HUVECs displayed a higher migratory capability accompanied by an increased Vascular Endothelial Growth Factor (VEGF) and VEGF receptor-2 (kinase insert domain receptor, KDR) expression. Moreover, both pharmacological and genetic inhibition of eNOS induced a state of pseudohypoxia, revealed by the stabilization of hypoxia-inducible factor-1α (HIF-1α). Furthermore, NO loss induced a significant decrease in mitochondrial mass and energy production accompanied by a lower O(2) consumption. Notably, very low doses of chronically administered DETA/NO reverted the HIF-1α accumulation, the increased VEGF expression and the stimulated migratory behaviour detected in NO deficient cells. CONCLUSION: Based on our results, we propose that basal release of NO may act as a negative controller of HIF-1α levels with important consequences for endothelial cell physiology. Moreover, we suggest that our experimental model where eNOS activity was impaired by pharmacological and genetic inhibition may represent a good in vitro system to study endothelial dysfunction.
- Published
- 2011
37. NADH-cytochromeb5reductase and cytochromeb5isoforms as models for the study of post-translational targeting to the endoplasmic reticulum
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Grazia Pietrini, Marcella De Silvestris, Antonello D'Arrigo, and Nica Borgese
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Cytochrome-B(5) Reductase ,Gene isoform ,Biophysics ,Biology ,Biochemistry ,Structural Biology ,Cytochrome b5 ,Genetics ,Animals ,Protein myristylation ,RNA, Messenger ,Molecular Biology ,Integral membrane protein ,Cytochrome Reductases ,Cytochrome b5 reductase ,Alternative promoter ,Cytochrome b ,Endoplasmic reticulum ,Alternative splicing ,Intracellular Membranes ,Cell Biology ,Outer mitochondrial membrane ,Cytochromes b5 ,Protein Processing, Post-Translational - Abstract
Cytochrome b5 and NADH-cytochrome b5, reductase are integral membrane proteins with cytosolic active domains and short membrane anchors, which are inserted post-translationally into their target membranes. Both are produced as different isoforms, with different localizations, in mammalian cells. In the rat, the reductase gene generates two transcripts by an alternative promoter mechanism: a ubiquitous mRNA coding for the myristylated membrane-bound form, and an erythroid mRNA which generates both the soluble form and a nonmyristylated membrane-binding form. The available evidence indicates that the ubiquitous myristylated form binds to the cytosolic face of both outer mitochondrial membranes and ER. In contrast, two genes code for two homologous forms of cytochrome b5, one of which is found on outer mitochondrial membranes, the other on the ER. The gene specifying the ER form probably also generates an erythroid-specific mRNA by alternative splicing, which codes for soluble cytochrome b5. Possible molecular mechanisms responsible for the observed localizations of these different enzyme isoforms are discussed.
- Published
- 1993
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38. The specific subcellular localization of two isoforms of cytochrome b5 suggests novel targeting pathways
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Nica Borgese, E. Manera, Antonello D'Arrigo, and Renato Longhi
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Hemeprotein ,biology ,Cytochrome b ,Endoplasmic reticulum ,Cytochrome c ,Cytochrome P450 reductase ,Cell Biology ,Subcellular localization ,Biochemistry ,Cytochrome b5 ,biology.protein ,Bacterial outer membrane ,Molecular Biology - Abstract
Two forms of cytochrome b5 are present in rat tissues, with a sequence identity of approximately 60% in the cytoplasmically exposed, tryptic fragments (Lederer, F., Ghrir, R., Guiard, B., Cortial, S., and Ito, A. (1983) Eur. J. Biochem. 132, 95-102). It has been suggested that the two isoforms have partially overlapping subcellular distributions, with each form localized to some extent on both endoplasmic reticulum and outer mitochondrial membranes (Ito, A. (1980) J. Biochem. (Tokyo) 87, 73-80). To investigate the degree of specificity of the localization of cytochrome b5 isoforms, we studied their subcellular distributions with antipeptide antibodies, one specific for microsomal cytochrome b5, one specific for outer membrane cytochrome b, and one against a sequence common to the two cytochromes. We first identified outer membrane Cyt b as a tightly bound, Triton X-114-extractable, 23-kDa polypeptide. We then analyzed biochemically characterized rat liver subcellular fractions by Western blotting and found that outer mitochondrial membrane cytochrome b was not present on endoplasmic reticulum membranes. Conversely, microsomal cytochrome b5 was present on outer mitochondrial membranes in extremely low concentration, at a level
- Published
- 1993
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39. Remote origins of tail-anchored proteins
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Marco Righi and Nica Borgese
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Proteome ,ATPase ,Archaeal Proteins ,Biology ,Biochemistry ,Genome ,Bacterial Proteins ,Structural Biology ,Genetics ,Animals ,Humans ,Molecular Biology ,chemistry.chemical_classification ,Adenosine Triphosphatases ,Cell Membrane ,Membrane Proteins ,Cell Biology ,biology.organism_classification ,Archaea ,Cell biology ,Amino acid ,Cytosol ,Protein Transport ,Membrane protein ,chemistry ,Cytoplasm ,Chaperone (protein) ,biology.protein ,Hydrophobic and Hydrophilic Interactions ,Protein Processing, Post-Translational ,Bacteria ,Molecular Chaperones - Abstract
C-tail-anchored (TA) proteins constitute a heterogeneous group of membrane proteins that are inserted into membranes by unique post-translational mechanisms and that play key roles within cells. During recent years, bioinformatic screens on eukaryotic genomes have helped to obtain comprehensive pictures of the number, intracellular distribution and functions of TA proteins, but similar screens had not yet been carried out on prokaryotic cells. Here, we report the results of a bioinformatic screen of the genomes of two bacteria and one archeon. We find that all three of these prokaryotes contain TA proteins in proportions approaching those found in eukaryotic cells, indicating that this protein group is present in all three domains of life. Although some of our hits correspond to proteins of unknown function, others are enzymes with hydrophobic substrates or have functions carried out at the inner face of the cytoplasmic membrane. To generate hypotheses on the insertion mechanisms of prokaryotic TA proteins, we compared the sequences of the prokaryotic and eukaryotic versions of Asna1/Trc40/GET3, a cytosolic ATPase that plays a key role in TA protein post-translational delivery to membranes in eukaryotic cells. We found that hydrophobic residues involved in TA binding by the eukaryotic chaperone (Mateja et al., Nature 2009;461:361–366) are generally replaced with equally hydrophobic amino acids in the archeal homologue (ArsA), whereas this is not the case for the bacterial protein. Thus, eukaryotes may have inherited the GET3 targeting pathway from our archeal ancestor, while the bacterial homologue may be exclusively dedicated to heavy metal resistance.
- Published
- 2010
40. Enzymatic instability of NADH-cytochrome b5 reductase as a cause of hereditary methemoglobinemia type I (red cell type)
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Nica Borgese, Komei Shirabe, M. Takeshita, Donald E. Hultquist, Chuan-Ye Tang, and Toshitsugu Yubisui
- Subjects
Cytochrome-B(5) Reductase ,chemistry.chemical_classification ,Point mutation ,Mutant ,Wild type ,Cell Biology ,Biology ,Reductase ,Biochemistry ,Enzyme ,chemistry ,Congenital Methemoglobinemia ,Molecular Biology ,Cytochrome b5 reductase - Abstract
Nucleotide substitutions in the gene for NADH-cytochrome b5 reductase were identified in three independent probands of hereditary methemoglobinemia type I. Patients in Kagoshima and Okinawa in Japan were shown to possess the same base change, from guanine to adenine at codon 57, which results in amino acid substitution from Arg to Gln. This nucleotide change was the same as formerly found in a patient in Toyoake, Japan (Katsube, T., Sakamoto, N., Kobayashi, Y., Seki, R., Hirano, M., Tanishima, K., Tomoda, A., Takazakura, E., Yubisui, T., Takeshita, M., Sakaki, Y., and Fukumaki, Y. (1991) Am. J. Hum. Genet. 48, 799-808). A type I patient in Italy was shown to have a base change from guanine to adenine at codon 105 which causes substitution from Val to Met. To characterize the enzymes of type I patients, Arg-57----Gln and Val-105----Met mutant enzymes were overexpressed in Escherichia coli and purified to homogeneity. kcat/Km values (NADH) of these two enzymes were 25% in Arg-57----Gln and 14.5% in Val-105----Met compared with that of the wild type enzyme, while the value of type II (generalized, severe form of the disease) mutant enzyme was 3% of the normal value (Yubisui, T., Shirabe, K., Takeshita, M., Kobayashi, Y., Fukumaki, Y., Sakaki, Y., and Takano, T. (1991) J. Biol. Chem. 266, 66-70). The type I mutant enzymes were less heat-stable and more susceptible to proteinase treatment than the wild type. From these results we conclude that restriction of enzyme deficiency to red cells in hereditary methemoglobinemia type I may be generally derived from instability and increased proteolytic susceptibility of variant NADH-cytochrome b5 reductases due to a point mutation.
- Published
- 1992
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41. A VAPB mutant linked to amyotrophic lateral sclerosis generates a novel form of organized smooth endoplasmic reticulum
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Silvia Brambillasca, Matteo Fossati, Annamaria Ruggiano, Francesca Navone, Nica Borgese, Elisa Fasana, Maura Francolini, Casper C. Hoogenraad, and Neurosciences
- Subjects
Motor Neurons ,Endoplasmic reticulum ,Cell ,Mutant ,Amyotrophic Lateral Sclerosis ,Vesicular Transport Proteins ,Signal transducing adaptor protein ,VAPB ,Biology ,Endoplasmic Reticulum ,Biochemistry ,Inclusion bodies ,Cell biology ,Rats ,medicine.anatomical_structure ,Mutation ,Genetics ,medicine ,Animals ,Humans ,Molecular Biology ,Lipid Transport ,Biogenesis ,Biotechnology ,HeLa Cells - Abstract
VAPB (vesicle-associated membrane protein-associated protein B) is an endoplasmic reticulum (ER)-resident tail-anchored adaptor protein involved in lipid transport. A dominantly inherited mutant, P56S-VAPB, causes a familial form of amyotrophic lateral sclerosis (ALS) and forms poorly characterized inclusion bodies in cultured cells. To provide a cell biological basis for the understanding of mutant VAPB pathogenicity, we investigated its biogenesis and the inclusions that it generates. Translocation assays in cell-free systems and in cultured mammalian cells were used to investigate P56S-VAPB membrane insertion, and the inclusions were characterized by confocal imaging and electron microscopy. We found that mutant VAPB inserts post-translationally into ER membranes in a manner indistinguishable from the wild-type protein but that it rapidly clusters to form inclusions that remain continuous with the rest of the ER. Inclusions were induced by the mutant also when it was expressed at levels comparable to the endogenous wild-type protein. Ultrastructural analysis revealed that the inclusions represent a novel form of organized smooth ER (OSER) consisting in a limited number of parallel cisternae (usually 2 or 3) interleaved by a similar to 30 nm-thick electron-dense cytosolic layer. Our results demonstrate that the ALS-linked VAPB mutant causes dramatic ER restructuring that may underlie its pathogenicity in motoneurons.-Fasana, E., Fossati, M., Ruggiano, A., Brambillasca, S., Hoogenraad, C. C., Navone, F., Francolini, M., Borgese, N. A VAPB mutant linked to amyotrophic lateral sclerosis generates a novel form of organized smooth endoplasmic reticulum. FASEB J. 24, 1419-1430 (2010). www.fasebj.org
- Published
- 2009
42. Basal nitric oxide release attenuates cell migration of HeLa and endothelial cells
- Author
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Stefania Bulotta, Lucia M. Vicentini, Maria Grazia Cattaneo, Andrea Cerullo, Maria Vincenza Ierardi, Nica Borgese, and Jessica Maiuolo
- Subjects
Nitric Oxide Synthase Type III ,Biophysics ,Biology ,Nitric Oxide ,Biochemistry ,Nitric oxide ,HeLa ,chemistry.chemical_compound ,Phosphatidylinositol 3-Kinases ,Enos ,Cell Movement ,Humans ,Nitric Oxide Donors ,Molecular Biology ,Protein kinase B ,Chemotaxis ,Endothelial Cells ,Cell migration ,Cell Biology ,biology.organism_classification ,Cell biology ,Endothelial stem cell ,chemistry ,Soluble guanylyl cyclase ,Proto-Oncogene Proteins c-akt - Abstract
Nitric oxide (NO) generated by endothelial NO synthase (eNOS) is a key regulator of endothelial cell (EC) migration. Whereas the effects of acute NO generation are generally stimulatory, the role of chronic basal NO release has not been explored so far. Here, we addressed this question both in HeLa and in human endothelial cells. In stably transfected HeLa cells, inducibly expressing eNOS, expression of the enzyme per se blunted the phosphorylation of Akt/PKB in response to serum and strongly inhibited chemotaxis, an effect partially blocked by eNOS- and soluble guanylyl cyclase (sGC) inhibitors. Likewise, long-term pre-treatment of non-transfected HeLa cells with nanomolar concentrations of an NO donor inhibited subsequent migration, an effect blocked by sGC inhibition and mimicked by a cGMP analog. Finally, EC migration was stimulated by chronic pre-treatment with an eNOS inhibitor. Thus, in addition to its well-known stimulatory role, eNOS attenuates migration through basal long-term NO release.
- Published
- 2009
43. The role of cytosolic proteins in the insertion of tail-anchored proteins into phospholipid bilayers
- Author
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Sara Francesca Colombo, Nica Borgese, and Renato Longhi
- Subjects
Alkylating Agents ,Reticulocytes ,Time Factors ,EGF-like domain ,Swine ,Lipid Bilayers ,Biology ,medicine.disease_cause ,Cell Line ,Cytosol ,Microsomes ,Protein targeting ,Chlorocebus aethiops ,medicine ,Animals ,Integral membrane protein ,Phospholipids ,Diamide ,Peripheral membrane protein ,Sulfhydryl Reagents ,Cell Biology ,Oxidants ,Transmembrane protein ,Recombinant Proteins ,Cell biology ,Protein Structure, Tertiary ,Rats ,Transmembrane domain ,Protein Transport ,Cytochromes b5 ,Membrane protein ,Ethylmaleimide ,DEP domain ,Rabbits ,Hydrophobic and Hydrophilic Interactions ,Oxidation-Reduction ,Molecular Chaperones - Abstract
Tail-anchored (TA) proteins are membrane proteins that contain an N-terminal domain exposed to the cytosol and a single transmembrane segment near the C-terminus followed by few or no polar residues. TA proteins with a mildly hydrophobic transmembrane domain, such as cytochrome b5 (b5), are able to insert post-translationally into pure lipid vesicles without assistance from membrane proteins. Here, we investigated whether any cytosolic proteins are needed to maintain b5 in a competent state for transmembrane integration. Using b5 constructs translated in vitro or produced in bacteria, we demonstrate that cytosolic proteins are neither necessary nor facilitatory for the unassisted translocation of b5. Furthermore, we demonstrate that no cytosolic protein is involved in the translocation of a C-terminal domain of 85 residues appended to the transmembrane domain of b5. Nevertheless, b5 does bind cytosolic proteins, and in their presence but not in their absence, its insertion into liposomes is inhibited by the thiol oxidant diamide and the alkylating agent N-ethylmaleimide. The effect of diamide is also observed in living cells. Thus, the specific in vivo targeting of b5 might be achieved by interaction with redox-sensitive targeting factors that hinder its nonspecific insertion into any permissive bilayer.
- Published
- 2009
44. Congenital methemoglobinemia due to methemoglobin reductase deficiency in two unrelated American black families
- Author
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Josef T. Prchal, Nica Borgese, Michael R. Moore, M.Kelley Hall, Herman Moreno, and Emanuel Hegesh
- Subjects
Adult ,medicine.medical_specialty ,Erythrocytes ,Adolescent ,Methemoglobinemia ,Polymorphism (computer science) ,hemic and lymphatic diseases ,Internal medicine ,Cytochrome b5 ,medicine ,Humans ,Methemoglobin ,Sulfhemoglobin ,chemistry.chemical_classification ,business.industry ,General Medicine ,NAD ,medicine.disease ,Methemoglobin Reductase ,Enzyme ,Endocrinology ,chemistry ,Mutation ,Congenital Methemoglobinemia ,Female ,Hemoglobin ,business ,Cytochrome-B(5) Reductase ,Hemoglobin M - Abstract
H ereditary methemoglobinemia is caused by either an inherited mutant hemoglobin (hemoglobin M), a deficiency of physiologically active methemoglobin reductase (MR) [NADH cytochrome b5 reductase] [l], or a deficiency of cytochrome b5 [2]. A majority of the patients born with these abnormalities have what can be considered only a cosmetic defectasymptomatic cyanosis. However, approximately 10% of individuals with methemoglobin reductase deficiency also have severe neurologic defects. In such patients, the enzyme deficiency is also found in nucleated cells, in contrast to those patients with the enzyme deficiency without neurologic defects in whom the activity of this enzyme in leukocytes is either normal or only slightly reduced [3]. The gene for this enzyme has been recently localized to chromosome 22 [4], and its partial cDNA sequence has been determined in both rat and man [5,6]. A genetic polymorphism for the deficiency is present among certain racial and ethnic groups such as Eskimos, American Indians, and Puerto Ricans [7]. In other ethnic and racial groups, the deficiency is sporadic and probably heterogeneous [7,8], but none has been observed among blacks. One could expect that the clinical expression (i.e., cyanosis) of the deficiency of erythrocyte methemoglobin reductase in blacks would be difficult to detect since it would be masked by naturally occurring skin pigment. We describe the clinical features of two unrelated American black women, residents of two different southern states, with congenital methemoglobinemia due to erythrocytic deficiency of methemoglobin reductase. Results of studies
- Published
- 1990
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45. Unassisted translocation of large polypeptide domains across phospholipid bilayers
- Author
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Monica Yabal, Marja Makarow, Nica Borgese, and Silvia Brambillasca
- Subjects
Saccharomyces cerevisiae Proteins ,Synaptobrevin ,Lipid Bilayers ,Phospholipid ,Protein tyrosine phosphatase ,Biology ,Protein Sorting Signals ,Article ,Cell membrane ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,medicine ,Lipid bilayer ,Phospholipids ,Research Articles ,030304 developmental biology ,0303 health sciences ,Models, Genetic ,Cell Membrane ,Cell Biology ,Transmembrane protein ,Transport protein ,Protein Structure, Tertiary ,Transmembrane domain ,Protein Transport ,medicine.anatomical_structure ,chemistry ,Biochemistry ,Liposomes ,Biophysics ,Protein Tyrosine Phosphatases ,Peptides ,030217 neurology & neurosurgery - Abstract
Although transmembrane proteins generally require membrane-embedded machinery for integration, a few can insert spontaneously into liposomes. Previously, we established that the tail-anchored (TA) protein cytochrome b(5) (b5) can posttranslationally translocate 28 residues downstream to its transmembrane domain (TMD) across protein-free bilayers (Brambillasca, S., M. Yabal, P. Soffientini, S. Stefanovic, M. Makarow, R.S. Hegde, and N. Borgese. 2005. EMBO J. 24:2533–2542). In the present study, we investigated the limits of this unassisted translocation and report that surprisingly long (85 residues) domains of different sequence and charge placed downstream of b5's TMD can posttranslationally translocate into mammalian microsomes and liposomes at nanomolar nucleotide concentrations. Furthermore, integration of these constructs occurred in vivo in translocon-defective yeast strains. Unassisted translocation was not unique to b5 but was also observed for another TA protein (protein tyrosine phosphatase 1B) whose TMD, like the one of b5, is only moderately hydrophobic. In contrast, more hydrophobic TMDs, like synaptobrevin's, were incapable of supporting unassisted integration, possibly because of their tendency to aggregate in aqueous solution. Our data resolve long-standing discrepancies on TA protein insertion and are relevant to membrane evolution, biogenesis, and physiology.
- Published
- 2006
46. Nicotine-induced subunit stoichiometry affects the stability and intracellular trafficking of α3β4 nicotinic receptors
- Author
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Francesco Pistillo, Cecilia Gotti, Francesca Mazzo, Nica Borgese, Francesco Clementi, and Sara Francesca Colombo
- Subjects
Pharmacology ,Nicotine ,Nicotinic Receptors ,Chemistry ,Protein subunit ,medicine ,Biophysics ,Biochemistry ,Intracellular ,Stoichiometry ,medicine.drug - Published
- 2013
- Full Text
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47. A cellular system to study the role of nitric oxide in cell death, survival, and migration
- Author
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Emilio Clementi, Cristiana Perrotta, Nica Borgese, Clara De Palma, Stefania Bulotta, and Andrea Cerullo
- Subjects
Ceramide ,Nitric Oxide Synthase Type III ,Cell Survival ,Apoptosis ,Toxicology ,Ceramides ,Nitric Oxide ,Transfection ,Nitric oxide ,HeLa ,chemistry.chemical_compound ,Enos ,Cell Movement ,Humans ,Enzyme Inhibitors ,biology ,Cell Death ,Neovascularization, Pathologic ,General Neuroscience ,biology.organism_classification ,Cell biology ,Signalling ,chemistry ,Intracellular ,HeLa Cells ,Signal Transduction - Abstract
The gaseous messenger nitric oxide (NO) plays a bewildering number of roles in fundamental processes, such as cell locomotion, differentiation, proliferation and death. Its different and often contrasting roles may depend on its concentration and intracellular site of generation. We describe here a simple system with which to investigate the roles of NO generated at physiological levels in HeLa cells by eNOS transfected under an inducible promoter. This system has allowed us to uncover unexpected signalling circuits between NO and ceramide, involved in the response of cells to apoptotic stimuli. At present, we are using these cells as a tool to investigate the role of NO in migration.
- Published
- 2004
48. Interactions between nitric oxide and sphingolipids and the potential consequences in physiology and pathology
- Author
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Nica Borgese, Jacopo Meldolesi, and Emilio Clementi
- Subjects
Nitric Oxide Synthase Type III ,Nitric Oxide Synthase Type II ,Inflammation ,Apoptosis ,Cell Communication ,Nitric Oxide Synthase Type I ,Biology ,Toxicology ,Ceramides ,Nitric Oxide ,Nitric oxide ,chemistry.chemical_compound ,medicine ,Animals ,Pharmacology ,Sphingolipids ,Cell growth ,Sphingolipid ,Cell biology ,Enzyme Activation ,Metabolic pathway ,chemistry ,medicine.symptom ,Nitric Oxide Synthase ,Cell Division ,Signal Transduction - Abstract
Studies undertaken in the past six years have shown that nitric oxide and many members of the sphingolipid family interact in two-way systems, whereby each ‘player' regulates and is regulated by another ‘player'. These interactions take place at the level of the expression and activity of several enzymes that regulate both the sphingolipid metabolic pathways and the generation of nitric oxide. So far, the outcomes of these interactions have been elucidated only in part. It is already clear, however, that they play prominent roles in key biological processes, including apoptosis, inflammation and cell growth.
- Published
- 2003
49. The cross-talk between nitric oxide and sphingomyelinases regulates apoptosis induction by tumour necrosis factor-α
- Author
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Emilio Clementi, Stefania Bulotta, Rico Barsacchi, Cristiana Perrotta, Nica Borgese, Sestina Falcone, Orazio Cantoni, C De Palma, P Sestili, and Salvador Moncada
- Subjects
chemistry.chemical_compound ,Necrosis ,Chemistry ,Cancer research ,medicine ,General Medicine ,medicine.symptom ,Apoptosis induction ,Nitric oxide - Published
- 2003
- Full Text
- View/download PDF
50. The tale of tail-anchored proteins: coming from the cytosol and looking for a membrane
- Author
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Nica, Borgese, Sara, Colombo, and Emanuela, Pedrazzini
- Subjects
endoplasmic reticulum ,membrane traffic ,mitochondrial outer membrane ,protein targeting and translocation ,transmembrane domain ,Cytosol ,Eukaryotic Cells ,Molecular Structure ,Cell Membrane ,Animals ,Humans ,Membrane Proteins ,Intracellular Membranes ,Mini-Review ,Protein Processing, Post-Translational ,Protein Structure, Tertiary - Abstract
A group of integral membrane proteins, known as C-tail anchored, is defined by the presence of a cytosolic NH2-terminal domain that is anchored to the phospholipid bilayer by a single segment of hydrophobic amino acids close to the COOH terminus. The mode of insertion into membranes of these proteins, many of which play key roles in fundamental intracellular processes, is obligatorily posttranslational, is highly specific, and may be subject to regulatory processes that modulate the protein's function. Although recent work has elucidated structural features in the tail region that determine selection of the correct target membrane, the molecular machinery involved in interpreting this information, and in modulating tail-anchored protein localization, has not been identified yet.
- Published
- 2003
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