1. KRASmutations in blood circulating cell-free DNA: a pancreatic cancer case-control
- Author
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Maroulio Pertesi, Florence Le Calvez-Kelm, Maxime Vallée, Ghislaine Scelo, Tiffany M. Delhomme, Matthieu Foll, Sabina Rinaldi, Zora Adamcakova, Priscilia Chopard, Paul Brennan, Lenka Foretova, James McKay, Eleonora Fabianova, Vladimir Janout, Magdalena B. Wozniak, Ivana Holcatova, Graham Byrnes, and Geoffroy Durand
- Subjects
Male ,0301 basic medicine ,KRAS mutations ,Slovakia ,CA-19-9 Antigen ,DNA Mutational Analysis ,Mutant ,pancreatic cancer detection ,Pilot Projects ,medicine.disease_cause ,Deep sequencing ,Circulating Tumor DNA ,cell-free DNA ,Proto-Oncogene Proteins p21(ras) ,03 medical and health sciences ,0302 clinical medicine ,Gene Frequency ,Predictive Value of Tests ,Pancreatic cancer ,Biomarkers, Tumor ,medicine ,Humans ,Genetic Predisposition to Disease ,Allele ,plasma ,Aged ,Czech Republic ,Neoplasm Staging ,business.industry ,Reproducibility of Results ,Middle Aged ,Amplicon ,medicine.disease ,Pancreatic Neoplasms ,Phenotype ,030104 developmental biology ,Oncology ,Cell-free fetal DNA ,Case-Control Studies ,030220 oncology & carcinogenesis ,Mutation ,Immunology ,Cancer research ,Pancreatitis ,Female ,KRAS ,business ,Research Paper ,Carcinoma, Pancreatic Ductal - Abstract
The utility of KRAS mutations in plasma circulating cell-free DNA (cfDNA) samples as non-invasive biomarkers for the detection of pancreatic cancer has never been evaluated in a large case-control series. We applied a KRAS amplicon-based deep sequencing strategy combined with analytical pipeline specifically designed for the detection of low-abundance mutations to screen plasma samples of 437 pancreatic cancer cases, 141 chronic pancreatitis subjects, and 394 healthy controls. We detected mutations in 21.1% (N=92) of cases, of whom 82 (89.1%) carried at least one mutation at hotspot codons 12, 13 or 61, with mutant allelic fractions from 0.08% to 79%. Advanced stages were associated with an increased proportion of detection, with KRAS cfDNA mutations detected in 10.3%, 17,5% and 33.3% of cases with local, regional and systemic stages, respectively. We also detected KRAS cfDNA mutations in 3.7% (N=14) of healthy controls and in 4.3% (N=6) of subjects with chronic pancreatitis, but at significantly lower allelic fractions than in cases. Combining cfDNA KRAS mutations and CA19-9 plasma levels on a limited set of case-control samples did not improve the overall performance of the biomarkers as compared to CA19-9 alone. Whether the limited sensitivity and specificity observed in our series of KRAS mutations in plasma cfDNA as biomarkers for pancreatic cancer detection are attributable to methodological limitations or to the biology of cfDNA should be further assessed in large case-control series.
- Published
- 2016
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