25 results on '"Patrick Trapa"'
Search Results
2. Target Occupancy Study and Whole-Body Dosimetry with a MAGL PET Ligand 11C-PF-06809247 in non-human Primates
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Akihiro Takano, Nahid Amini, Edmund J. Keliher, Christer Halldin, Lei Zhang, Richard E. Carson, Patrick Trapa, Sangram Nag, Ryosuke Arakawa, Deane M. Nason, Kevin P. Maresca, Zhisheng Jia, John Litchfield, Tarek A. Samad, Christopher Ryan Butler, Justin R. Piro, Timothy J. McCarthy, Deborah L. Smith, Steve O’Neil, and Kari R. Fonseca
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Monoacylglycerol lipase ,Chemistry ,Pet ligand ,Dosimetry ,Radiology, Nuclear Medicine and imaging ,Computational biology ,Whole body - Abstract
Background Monoacylglycerol lipase (MAGL) is a key serine hydrolase which terminates endocannabinoid signaling and regulates arachidonic acid driven inflammatory responses within the central nervous system. To develop [11C]PF-06809247 into a clinically usable MAGL positron emission tomography (PET) radioligand, we assessed the occupancy of MAGL by an inhibitor in the non-human primate (NHP) brain. Additionally, we measured the whole-body distribution of [11C]PF-06809247 in NHP and estimated human effective radiation doses. Methods Seven cynomolgus monkeys were enrolled for brain PET measurements. Two PET measurements along with arterial blood sampling were performed in each NHP: one baseline and one pretreatment condition with intravenous administration of PF-06818883, a pro-drug of a selective MAGL inhibitor (total of seven doses between 0.01 and 1.27 mg/kg). Kinetic parameters K1, k2 and k3 were estimated by a two tissue compartment (2TC) model using metabolite corrected plasma radioactivity as the input function. k4 was set as 0 according to the irreversible binding of [11C]PF-06809247. Ki by 2TC and Patlak analysis were calculated as the influx constant. The target occupancy was calculated using Ki at baseline and pretreatment conditions. Two cynomolgus monkeys were enrolled for whole-body PET measurements. Estimates of the absorbed radiation dose in humans were calculated with OLINDA/EXM 1.1 using the adult male reference model. Results Radioactivity retention was decreased in all brain regions following pretreatment with PF-06818883. Occupancy was measured as 25.4–100.5% in a dose dependent manner. Whole-body PET showed high radioactivity uptake values in the liver, small intestine, kidney, and brain. The effective dose of [11C]PF-06809247 was calculated as 4.3 μSv/MBq. Conclusions [11C]PF-06809247 is a promising PET ligand for further studies of MAGL in the human brain.
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- 2021
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3. D1 Agonist Improved Movement of Parkinsonian Nonhuman Primates with Limited Dyskinesia Side Effects
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David Gray, Kari R. Fonseca, Damon Young, Michael Popiolek, Julie Brevard, Rouba Kozak, and Patrick Trapa
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Agonist ,Dyskinesia, Drug-Induced ,Parkinson's disease ,Side effect ,Physiology ,medicine.drug_class ,Dopamine ,Cognitive Neuroscience ,Disease ,Motor Activity ,Biochemistry ,Antiparkinson Agents ,03 medical and health sciences ,0302 clinical medicine ,Dopamine receptor D1 ,Parkinsonian Disorders ,medicine ,Animals ,Oxidopamine ,030304 developmental biology ,0303 health sciences ,business.industry ,Dopaminergic ,Neurodegenerative Diseases ,Parkinson Disease ,Cell Biology ,General Medicine ,medicine.disease ,Corpus Striatum ,Rats ,nervous system diseases ,Dyskinesia ,Dopamine Agonists ,medicine.symptom ,business ,Neuroscience ,030217 neurology & neurosurgery ,medicine.drug - Abstract
Parkinson's disease is a progressive neurodegenerative disease characterized by striatal dopaminergic loss. L-DOPA treatment replaces lost dopamine and enables motor function; however, eventually, fluctuating efficacy and side effects associated with its use become challenging for many patients. Here, we demonstrate, in a clinically translatable nonhuman primate model of parkinsonian motor symptoms, that treatment with the partial D1 receptor agonist CVL-751, formerly known as PF-06649751, is just as effective as L-DOPA in enabling movement and reducing disability. Importantly, CVL-751 efficacy is observed with less of the concomitant dyskinesia side effect associated with L-DOPA treatment. Data presented suggest that partial D1 agonists may be an effective and important treatment strategy for the management of Parkinson's patients.
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- 2020
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4. Target occupancy study and whole-body dosimetry with a MAGL PET ligand [
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Ryosuke, Arakawa, Akihiro, Takano, Sangram, Nag, Zhisheng, Jia, Nahid, Amini, Kevin P, Maresca, Lei, Zhang, Edmund J, Keliher, Christopher R, Butler, Justin R, Piro, Tarek A, Samad, Deborah, Smith, Deane, Nason, Steve, O'Neil, Patrick, Trapa, Kari R, Fonseca, John, Litchfield, Timothy, McCarthy, Richard E, Carson, and Christer, Halldin
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Monoacylglycerol lipase (MAGL) is a key serine hydrolase which terminates endocannabinoid signaling and regulates arachidonic acid driven inflammatory responses within the central nervous system. To develop [Seven cynomolgus monkeys were enrolled for brain PET measurements. Two PET measurements along with arterial blood sampling were performed in each NHP: one baseline and one pretreatment condition with intravenous administration of PF-06818883, a pro-drug of a selective MAGL inhibitor (total of seven doses between 0.01 and 1.27 mg/kg). Kinetic parameters KRadioactivity retention was decreased in all brain regions following pretreatment with PF-06818883. Occupancy was measured as 25.4-100.5% in a dose dependent manner. Whole-body PET showed high radioactivity uptake values in the liver, small intestine, kidney, and brain. The effective dose of [[
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- 2021
5. Harnessing Preclinical Data as a Predictive Tool for Human Brain Tissue Targeting
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Nandini Chaturbhai Patel, Jennifer L. Liras, Patrick Trapa, Mark A. West, Tristan S. Maurer, Bo Feng, Patrick Robert Verhoest, Simone Sciabola, Travis T. Wager, and Xinjun Hou
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Drug ,Physiology ,Cognitive Neuroscience ,media_common.quotation_subject ,Biochemistry ,Madin Darby Canine Kidney Cells ,03 medical and health sciences ,0302 clinical medicine ,Dogs ,In vivo ,Medicine ,ATP Binding Cassette Transporter, Subfamily G, Member 2 ,Animals ,Humans ,030304 developmental biology ,media_common ,0303 health sciences ,business.industry ,In vitro toxicology ,Brain ,Transporter ,Cell Biology ,General Medicine ,Human brain ,In vitro ,Transport protein ,Neoplasm Proteins ,medicine.anatomical_structure ,Blood-Brain Barrier ,Efflux ,business ,Neuroscience ,030217 neurology & neurosurgery - Abstract
One of the objectives within the medicinal chemistry discipline is to design tissue targeting molecules. The objective of tissue specificity can be either to gain drug access to the compartment of interest (e.g., the CNS) for Neuroscience targets or to restrict drug access to the CNS for all other therapeutic areas. Both neuroscience and non-neuroscience therapeutic areas have struggled to quantitatively estimate brain penetration or the lack thereof with compounds that are substrates of efflux transport proteins such as P-glycoprotein (P-gp) and breast cancer resistant protein (BCRP) that are key components of the blood-brain barrier (BBB). It has been well established that drug candidates with high efflux ratios (ER) of these transporters have poor penetration into brain tissue. In the current work, we outline a parallel analysis to previously published models for the prediction of brain penetration that utilize an alternate MDR1-MDCK cell line as a better predictor of brain penetration and whether a correlation between in vitro, rodent data, non-human primate (NHP), and human in vivo brain penetration data could be established. Analysis of structural and physicochemical properties in conjunction with in vitro parameters and preclinical in vivo data has been highlighted in this manuscript as a continuation of the previously published work.
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- 2021
6. Development of a one-step RT-ddPCR method to determine the expression and potency of AAV vectors
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Edward Guilmette, Patrick Trapa, Shen Shen, Shih-Ching Lo, Pete Clarner, Shukkwan K. Lau, and Twinkle Chowdhury
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Gene knockdown ,assay development ,QH573-671 ,one-step RT-ddPCR ,Genetic enhancement ,RNA ,Computational biology ,Biology ,QH426-470 ,potency assay ,vector expression ,RNA interference ,Genetics ,Molecular Medicine ,Potency ,Digital polymerase chain reaction ,Original Article ,Vector (molecular biology) ,Cytology ,Molecular Biology ,Gene ,AAV gene therapy - Abstract
Robust assays to quantify adeno-associated virus (AAV) vector expression and potency are essential for gene therapy development. These assays inform the efficacy, safety, and pharmacodynamic profiles of AAV development candidates. Additionally, for gene downregulation strategies such as RNAi, knockdown of endogenous genes reflects the mechanism of action of such development candidates. Therefore, a method to quantify target mRNA repression is necessary for measuring vector potency both in vitro and in vivo. Here, we report the development of a one-step reverse-transcription droplet digital PCR (RT-ddPCR) method to analyze expression of AAV vectors and the potency of AAV-RNAi vectors. This one-step RT-ddPCR method simplifies the workflow, allows for duplexing reactions, and enables absolute quantification of transcripts without standard materials. With a gene augmentation vector, we demonstrate the application of RT-ddPCR in quantifying vector expression in vitro and in non-human primate (NHP) samples. This novel method is demonstrated to be precise and linear within the range of 0.05–25 ng of RNA input. Using an AAV-RNAi vector, we further demonstrate the utility of this RT-ddPCR method in quantifying potency. Orthogonal potency assays, including ELISA and functional readout, correlate well with RT-ddPCR results. Therefore, one-step RT-ddPCR can be implemented in the analytical and pharmacological characterization of AAV vectors., Graphical abstract, Clarner et al. developed a one-step RT-ddPCR method to quantify both AAV vector expression and endogenous gene repression for AAV gene therapy vectors. This novel method was applied to analysis of cell-based assays, mouse studies, and NHP studies to demonstrate robust correlation with orthogonal methods.
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- 2021
7. Next‐generation Bruton's tyrosine kinase inhibitor BIIB091 selectively and potently inhibits B cell and Fc receptor signaling and downstream functions in B cells and myeloid cells
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Jing Zhu, Xiaomei Peng, Alex Pellerin, Brian T. Hopkins, Dipen Sangurdekar, Michael Mingueneau, Urjana Poreci, Eris Bame, Joseph C Santoro, Prince Robin, Katherine Riester, Mike Palte, Allie M Roach, Klaus Michelsen, Bin Ma, Hao Tang, Million Arefayene, Stephen J Rubino, Devangi Mehta, Fergal Casey, Patrick Cullen, Patrick Trapa, Bekim Bajrami, Thomas M. Carlile, Davide Gianni, Marx Isaac, Douglas Donaldson, Baohong Zhang, Jeremy C. Burns, Param Muragan, Alex Coppell, Shibeshih Belachew, Nathalie Franchimont, and Matthew Scaramozza
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0301 basic medicine ,Myeloid ,Immunology ,Antigen presentation ,B-cell receptor ,Fc receptor ,multiple sclerosis ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Immunology and Allergy ,Bruton's tyrosine kinase ,General Nursing ,B cell ,B cells ,biology ,B‐cell receptor ,Chemistry ,BTK inhibitor ,Germinal center ,Original Articles ,RC581-607 ,030104 developmental biology ,medicine.anatomical_structure ,myeloid cells ,biology.protein ,Cancer research ,Original Article ,Immunologic diseases. Allergy ,Tyrosine kinase ,030215 immunology - Abstract
Objectives Bruton's tyrosine kinase (BTK) plays a non‐redundant signaling role downstream of the B‐cell receptor (BCR) in B cells and the receptors for the Fc region of immunoglobulins (FcR) in myeloid cells. Here, we characterise BIIB091, a novel, potent, selective and reversible small‐molecule inhibitor of BTK. Methods BIIB091 was evaluated in vitro and in vivo in preclinical models and in phase 1 clinical trial. Results In vitro, BIIB091 potently inhibited BTK‐dependent proximal signaling and distal functional responses in both B cells and myeloid cells with IC50s ranging from 3 to 106 nm, including antigen presentation to T cells, a key mechanism of action thought to be underlying the efficacy of B cell‐targeted therapeutics in multiple sclerosis. BIIB091 effectively sequestered tyrosine 551 in the kinase pocket by forming long‐lived complexes with BTK with t 1/2 of more than 40 min, thereby preventing its phosphorylation by upstream kinases. As a key differentiating feature of BIIB091, this property explains the very potent whole blood IC50s of 87 and 106 nm observed with stimulated B cells and myeloid cells, respectively. In vivo, BIIB091 blocked B‐cell activation, antibody production and germinal center differentiation. In phase 1 healthy volunteer trial, BIIB091 inhibited naïve and unswitched memory B‐cell activation, with an in vivo IC50 of 55 nm and without significant impact on lymphoid or myeloid cell survival after 14 days of dosing. Conclusion Pharmacodynamic results obtained in preclinical and early clinical settings support the advancement of BIIB091 in phase 2 clinical trials., In this study, we characterise BIIB091, a novel, potent, selective and reversible small‐molecule inhibitor of Bruton's Tyrosine Kinase (BTK). In vitro, BIIB091‐inhibited BTK‐dependent proximal signaling and distal functional responses in both B cells and myeloid cells, including antigen presentation to T cells, a key mechanism of action thought to be underlying the efficacy of B cell‐targeted therapeutics in MS. In vivo, BIIB091 blocked B‐cell activation, antibody production and germinal center differentiation, however in phase 1 healthy volunteer study, BIIB091 inhibited B‐cell receptor‐mediated activation of naïve and unswitched memory B cells.
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- 2021
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8. Discovery and Characterization of (R)-6-Neopentyl-2-(pyridin-2-ylmethoxy)-6,7-dihydropyrimido[2,1-c][1,4]oxazin-4(9H)-one (PF-06462894), an Alkyne-Lacking Metabotropic Glutamate Receptor 5 Negative Allosteric Modulator Profiled in both Rat and Nonhuman Primates
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Daniel P. Walker, Antonia F. Stepan, Mark A. Moen, Gregg D. Cappon, Christopher Houle, Annie C Won, Joshua R. Dunetz, Michael John Bohanon, Lei Zhang, Marc B. Skaddan, Patrick Robert Verhoest, Susan E. Drozda, Xinjun Hou, Kenneth R. Zasadny, Julie Cianfrogna, Deborah L. Smith, Ann S. Wright, John T. Lazzaro, Steven Victor O'neil, Patrick Trapa, Emily Miller, Somraj Ghosh, Gabriela Barreiro, John M. Marcek, Margaret M. Zaleska, Jason Barricklow, Michelle Marie Claffey, Lois K. Chenard, Jessica Mancuso, Christopher L. Shaffer, Jessica Whritenour, Gayatri Balan, Brian P. Boscoe, Vinod D. Parikh, Karen J. Coffman, Laigao Chen, Isao Sakurada, Jamison B. Tuttle, Matthew R. Reese, and Karki Kapil Kumar
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Male ,0301 basic medicine ,Allosteric modulator ,Pyridines ,Receptor, Metabotropic Glutamate 5 ,Alkyne ,Pharmacology ,030226 pharmacology & pharmacy ,Rats, Sprague-Dawley ,Structure-Activity Relationship ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Allosteric Regulation ,Drug Discovery ,Animals ,Humans ,Structure–activity relationship ,Receptor ,chemistry.chemical_classification ,Chemistry ,Metabotropic glutamate receptor 5 ,HEK 293 cells ,Rats ,Molecular Docking Simulation ,HEK293 Cells ,030104 developmental biology ,Toxicity ,Molecular Medicine ,Female ,Heterocyclic Compounds, 3-Ring - Abstract
We previously observed a cutaneous type IV immune response in nonhuman primates (NHP) with the mGlu5 negative allosteric modulator (NAM) 7. To determine if this adverse event was chemotype- or mechanism-based, we evaluated a distinct series of mGlu5 NAMs. Increasing the sp3 character of high-throughput screening hit 40 afforded a novel morpholinopyrimidone mGlu5 NAM series. Its prototype, (R)-6-neopentyl-2-(pyridin-2-ylmethoxy)-6,7-dihydropyrimido[2,1-c][1,4]oxazin-4(9H)-one (PF-06462894, 8), possessed favorable properties and a predicted low clinical dose (2 mg twice daily). Compound 8 did not show any evidence of immune activation in a mouse drug allergy model. Additionally, plasma samples from toxicology studies confirmed that 8 did not form any reactive metabolites. However, 8 caused the identical microscopic skin lesions in NHPs found with 7, albeit with lower severity. Holistically, this work supports the hypothesis that this unique toxicity may be mechanism-based although additional work is require...
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- 2017
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9. Insights from mathematical modeling for convection-enhanced intraputamenal delivery of GDNF
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Patrick Trapa, Elena Belova, and Christopher L. Shaffer
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Gadolinium DTPA ,0301 basic medicine ,animal diseases ,Biomedical Engineering ,Neurotrophic factor ,Striatum ,Pharmacology ,Models, Biological ,Central nervous system (CNS) ,03 medical and health sciences ,0302 clinical medicine ,Neurotrophic factors ,medicine ,Glial cell line-derived neurotrophic factor ,Humans ,Distribution (pharmacology) ,Intraparenchymal infusion ,Computer Simulation ,Glial Cell Line-Derived Neurotrophic Factor ,Convection-enhanced delivery (CED) ,Distribution Volume ,medicine.diagnostic_test ,biology ,urogenital system ,Chemistry ,Computational model ,Putamen ,Dopaminergic ,Magnetic resonance imaging ,Corpus Striatum ,Recombinant Proteins ,Computer Science Applications ,030104 developmental biology ,nervous system ,Anesthesia ,biology.protein ,Original Article ,030217 neurology & neurosurgery - Abstract
Glial cell line-derived neurotrophic factor (GDNF) is a potential therapy for Parkinson's disease (PD) promoting survival and functional recovery of dopaminergic neurons when delivered to the degenerated striatum. To study the aspects of intraputamenal delivery of GDNF, a mathematical model of recombinant methionyl human GDNF (r-metHuGDNF) convection in the human putamen has been developed. The convection-enhanced delivery infusions of r-metHuGDNF were simulated at rates up to 5 μL/min. The high-rate infusions (≥1 μL/min) permit rapid and uniform distribution of drug with up to 75% of the distribution volume having a concentration within 5% of the infusate concentration. No relevant differences in distribution at infusion rates of 3 and 5 μL/min were found. The patterns of GDNF distribution were analyzed in relation to the anatomy of the posterior dorsal putamen, and a cylindrical shape was found to be preferable considering risks of target overflow. A magnetic resonance (MR) tracer Gd-DTPA (Magnevist®) was evaluated as a surrogate in clinical studies, and the most accurate prediction of GDNF distribution was calculated immediately after infusion. The clearance of GDNF from the striatum is confirmed to be slow, with a half-life of ca. 19 h.
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- 2017
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10. Identification and Development of an Irreversible Monoacylglycerol Lipase (MAGL) Positron Emission Tomography (PET) Radioligand with High Specificity
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Christopher Ryan Butler, Timothy J. McCarthy, Ryosuke Arakawa, Deborah L. Smith, Klaas Schildknegt, Justin R. Piro, Lei Zhang, Kevin P. Maresca, Laura A. McAllister, Deane M. Nason, Zhisheng Jia, Sangram Nag, Akihiro Takano, Tarek A. Samad, Christer Halldin, Anabella Villalobos, Steven Victor O'neil, and Patrick Trapa
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Pharmacology ,Ligands ,01 natural sciences ,Madin Darby Canine Kidney Cells ,Rats, Sprague-Dawley ,03 medical and health sciences ,Dogs ,In vivo ,Drug Discovery ,Radioligand ,medicine ,Animals ,Humans ,Enzyme Inhibitors ,030304 developmental biology ,0303 health sciences ,Binding Sites ,medicine.diagnostic_test ,Chemistry ,Brain ,Serine hydrolase ,Pet imaging ,Ligand (biochemistry) ,Endocannabinoid system ,Magnetic Resonance Imaging ,Monoacylglycerol Lipases ,0104 chemical sciences ,Rats ,Monoacylglycerol lipase ,010404 medicinal & biomolecular chemistry ,Positron emission tomography ,Drug Design ,Positron-Emission Tomography ,Solvents ,Molecular Medicine ,Carbamates ,Endocannabinoids - Abstract
Monoacylglycerol lipase (MAGL), a serine hydrolase extensively expressed throughout the brain, serves as a key gatekeeper regulating the tone of endocannabinoid signaling. Preclinically, inhibition of MAGL is known to provide therapeutic benefits for a number of neurological disorders. The availability of a MAGL-specific positron emission tomography (PET) ligand would considerably facilitate the development and clinical characterization of MAGL inhibitors via noninvasive and quantitative PET imaging. Herein, we report the identification of the potent and selective irreversible MAGL inhibitor 7 (PF-06809247) as a suitable radioligand lead, which upon radiolabeling was found to exhibit a high level of MAGL specificity; this enabled cross-species measurement of MAGL brain expression (Bmax), assessment of in vivo binding in the rat, and nonhuman primate PET imaging.
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- 2019
11. Discovery of a Highly Selective Glycogen Synthase Kinase‐3 Inhibitor (PF‐04802367) That Modulates Tau Phosphorylation in the Brain: Translation for PET Neuroimaging
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Steven H. Liang, Jinshan Michael Chen, Marc D. Normandin, Jeanne S. Chang, George C. Chang, Christine K. Taylor, Patrick Trapa, Mark S. Plummer, Kimberly S. Para, Edward L. Conn, Lori Lopresti‐Morrow, Lorraine F. Lanyon, James M. Cook, Karl E. G. Richter, Charlie E. Nolan, Joel B. Schachter, Fouad Janat, Ye Che, Veerabahu Shanmugasundaram, Bruce A. Lefker, Bradley E. Enerson, Elijahu Livni, Lu Wang, Nicolas J. Guehl, Debasis Patnaik, Florence F. Wagner, Roy Perlis, Edward B. Holson, Stephen J. Haggarty, Georges El Fakhri, Ravi G. Kurumbail, and Neil Vasdev
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0301 basic medicine ,03 medical and health sciences ,030104 developmental biology ,010405 organic chemistry ,General Medicine ,01 natural sciences ,0104 chemical sciences - Published
- 2016
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12. In Vitro-In Vivo Extrapolation of Key Transporter Activity at the Blood-Brain Barrier
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Anthony Carlo, Bo Feng, Mark A. West, Jennifer L. Liras, Nandini Chaturbhai Patel, Thomas Y. K. Lau, Travis T. Wager, Matthew D. Troutman, Patrick Trapa, John P. Umland, and Tristan S. Maurer
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Abcg2 ,Pharmaceutical Science ,ATP-binding cassette transporter ,Blood–brain barrier ,Proteomics ,030226 pharmacology & pharmacy ,Cell Line ,Madin Darby Canine Kidney Cells ,Rats, Sprague-Dawley ,03 medical and health sciences ,0302 clinical medicine ,Dogs ,In vivo ,medicine ,Animals ,ATP Binding Cassette Transporter, Subfamily B, Member 1 ,Pharmacology ,biology ,Chemistry ,Brain ,Transporter ,Biological Transport ,In vitro ,Rats ,medicine.anatomical_structure ,Blood-Brain Barrier ,030220 oncology & carcinogenesis ,Biophysics ,biology.protein ,Efflux - Abstract
Understanding the quantitative implications of P-glycoprotein and breast cancer resistance protein efflux is a key hurdle in the design of effective, centrally acting or centrally restricted therapeutics. Previously, a comprehensive physiologically based pharmacokinetic model was developed to describe the in vivo unbound brain-to-plasma concentration ratio as a function of efflux activity measured in vitro. In the present work, the predictive utility of this framework was examined through application to in vitro and in vivo data generated on 133 unique compounds across three preclinical species. Two approaches were examined for the scaling of efflux activity to in vivo, namely relative expression as determined by independent proteomics measurements and relative activity as determined via fitting the in vivo neuropharmacokinetic data. The results with both approaches indicate that in vitro efflux data can be used to accurately predict the degree of brain penetration across species within the context of the proposed physiologically based pharmacokinetic framework.
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- 2018
13. Insights From an Integrated Physiologically Based Pharmacokinetic Model for Brain Penetration
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Dennis O. Scott, Jenny L. Liras, Stefan J. Steyn, Elena Belova, and Patrick Trapa
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0301 basic medicine ,Physiologically based pharmacokinetic modelling ,Quantitative structure–activity relationship ,Cell Membrane Permeability ,Quantitative Structure-Activity Relationship ,Pharmaceutical Science ,Pharmacology ,Models, Biological ,030226 pharmacology & pharmacy ,Mice ,03 medical and health sciences ,0302 clinical medicine ,In vivo ,Animals ,Humans ,Pharmacokinetics ,Mathematical model ,Chemistry ,In vitro toxicology ,Brain ,Statistical model ,Penetration (firestop) ,030104 developmental biology ,Pharmaceutical Preparations ,Blood-Brain Barrier ,Paracellular transport ,Biological system - Abstract
Central-nervous-system, physiologically based pharmacokinetic (PBPK) models predict exposure profiles in the brain, that is, the rate and extent of distribution. The current work develops one such model and presents improved methods for determining key input parameters. A simple linear regression statistical model estimates the passive permeability at the blood-brain barrier from brain uptake index data and descriptors, and a novel analysis extracts the relative active transport parameter from in vitro assays taking into consideration both paracellular transport and unstirred water layers. The integrated PBPK model captures the concentration profiles of both rate-restricted and effluxed compounds with high passive permeability. In many cases, compounds distribute rapidly into the brain and are, therefore, not rate limited. The PBPK model is then simplified to a straightforward equation to describe brain-to-plasma ratios at steady state. The equation can estimate brain penetration either from in vitro efflux data or from in vivo results from another species and, therefore, is a valuable tool in the discovery setting.
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- 2016
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14. Preclinical Pharmacokinetic/Pharmacodynamic Modeling and Simulation in the Pharmaceutical Industry: An IQ Consortium Survey Examining the Current Landscape
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Majid Vakilynejad, Arijit Chakravarty, Tonika Bohnert, Anu Shilpa Krishnatry, Jerome T. Mettetal, Tristan S. Maurer, Christopher R. Gibson, Daniel R. Mudra, Edgar Schuck, Yaming Su, Marjoleen J.M.A Nijsen, Tycho Heimbach, Shining Wang, Virna J A Schuck, Cheng-Pang Hsu, Harvey Wong, Patrick Trapa, Joseph Raybon, Patricia Schroeder, Satyendra Suryawanshi, Jing Lin, Bianca M. Liederer, Valeriu Damian-Iordache, and Alice Tsai
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Drug ,Discussion ,Dose-Response Relationship, Drug ,Drug Industry ,business.industry ,Pharmacokinetic pharmacodynamic ,Data Collection ,media_common.quotation_subject ,Drug Evaluation, Preclinical ,Pharmaceutical Science ,Pharmacy ,Pharmacology ,Models, Biological ,Pharmacokinetics ,Drug development ,Therapeutic Area ,Drug Design ,Pharmacodynamics ,Drug Discovery ,Humans ,Medicine ,Computer Simulation ,business ,Pharmaceutical industry ,media_common - Abstract
The application of modeling and simulation techniques is increasingly common in preclinical stages of the drug discovery and development process. A survey focusing on preclinical pharmacokinetic/pharmacodynamics (PK/PD) analysis was conducted across pharmaceutical companies that are members of the International Consortium for Quality and Innovation in Pharmaceutical Development. Based on survey responses, ~68% of companies use preclinical PK/PD analysis in all therapeutic areas indicating its broad application. An important goal of preclinical PK/PD analysis in all pharmaceutical companies is for the selection/optimization of doses and/or dose regimens, including prediction of human efficacious doses. Oncology was the therapeutic area with the most PK/PD analysis support and where it showed the most impact. Consistent use of more complex systems pharmacology models and hybrid physiologically based pharmacokinetic models with PK/PD components was less common compared to traditional PK/PD models. Preclinical PK/PD analysis is increasingly being included in regulatory submissions with ~73% of companies including these data to some degree. Most companies (~86%) have seen impact of preclinical PK/PD analyses in drug development. Finally, ~59% of pharmaceutical companies have plans to expand their PK/PD modeling groups over the next 2 years indicating continued growth. The growth of preclinical PK/PD modeling groups in pharmaceutical industry is necessary to establish required resources and skills to further expand use of preclinical PK/PD modeling in a meaningful and impactful manner.
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- 2015
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15. [O2–17–04]: PHARMACOKINETIC/PHARMACODYNAMIC (PK/PD) EFFECTS OF PF‐06648671, A NOVEL GAMMA SECRETASE MODULATOR (GSM), FOLLOWING SINGLE AND MULTIPLE DOSE ADMINISTRATION IN HEALTHY VOLUNTEERS
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Eva Hajos-Korcsok, Patrick Trapa, Terence Fullerton, Ruolun Qiu, Jae Eun Ahn, Richann Liu, and Kathleen M. Wood
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0301 basic medicine ,Epidemiology ,Pharmacokinetic pharmacodynamic ,business.industry ,Health Policy ,Pharmacology ,Multiple dose ,03 medical and health sciences ,Psychiatry and Mental health ,Cellular and Molecular Neuroscience ,030104 developmental biology ,0302 clinical medicine ,Developmental Neuroscience ,Healthy volunteers ,Medicine ,Neurology (clinical) ,Geriatrics and Gerontology ,business ,030217 neurology & neurosurgery ,PK/PD models ,Gamma secretase - Published
- 2017
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16. Enhancing ketamine translational pharmacology via receptor occupancy normalization
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Deborah L. Smith, Sarah M. Osgood, JianHua Liu, Christopher L. Shaffer, and Patrick Trapa
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Male ,Normalization (statistics) ,Pharmacology ,Tritium ,Receptors, N-Methyl-D-Aspartate ,Rats, Sprague-Dawley ,Cellular and Molecular Neuroscience ,Species Specificity ,Memory ,medicine ,Animals ,Ketamine ,Receptor ,IC50 ,Active metabolite ,Depression ,Chemistry ,Rats ,Macaca fascicularis ,Pharmacodynamics ,NMDA receptor ,Antidepressant ,Dizocilpine Maleate ,Excitatory Amino Acid Antagonists ,medicine.drug - Abstract
Ketamine is used preclinically and clinically to study schizophrenia and depression. Accordingly, it is imperative to understand the temporal relationship between the central concentrations and N-methyl-d-aspartate receptor (NMDAR) interactions of both ketamine and norketamine, its primary active metabolite, across species to assess the translatability of animal models to humans and the back-translation of clinical observations to the preclinical realm. However, such an interspecies normalization of ketamine and norketamine exposures at different clinical and preclinical doses (and their different routes and regimens) is lacking. This work defines the NMDAR occupancy (RO) time course following single doses of ketamine in rats, nonhuman primates (nhp) and humans to allow direct interspecies comparisons of specific ketamine-mediated pharmacodynamics via RO normalization. Total plasma concentration (Cp)-time profiles of ketamine and norketamine were generated from rats and nhp following a single, memory-impairing dose of ketamine; neuropharmacokinetics were determined in rats. [(3)H]MK-801-displacement studies in rats determined estimated mean (95% confidence interval) unbound plasma concentrations (Cp,u) for ketamine and norketamine producing 50% RO (IC50) of 1420 (990, 2140) nM and 9110 (5870, 13700) nM, respectively. Together, these datasets transformed Cp,u-time data to predicted RO (ROpred)-time profiles for rats, nhp and humans at behaviorally relevant ketamine doses. Subsequently, this approach helped determine an infusion paradigm in rats producing a ROpred-time profile mirroring that for a clinically antidepressant infusion. The described indication-independent methodology allows normalization to RO at any time following any ketamine dose (regardless of route or regimen) in any species by simply quantifying the Cp of ketamine and norketamine. Matching temporal RO relationships in animals and humans should allow direct comparisons of specific ketamine-dependent NMDAR-based pharmacodynamics.
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- 2014
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17. Permeability Comparison between Hepatocyte and Low Efflux MDCKII Cell Monolayer
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Li Di, Rui Li, Yurong Lai, Patrick Trapa, Kiyohiko Sugano, Yi-an Bi, and Stefanus J. Steyn
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Cell Membrane Permeability ,Cell ,Biological Transport, Active ,Pharmaceutical Science ,Cell Line ,Madin Darby Canine Kidney Cells ,Cell membrane ,Dogs ,Species Specificity ,Monolayer ,medicine ,Animals ,Humans ,Chemistry ,Penetration (firestop) ,Rats ,medicine.anatomical_structure ,Biochemistry ,Cell culture ,Hepatocyte ,Lipophilicity ,Hepatocytes ,Biophysics ,Efflux ,Algorithms ,Research Article - Abstract
Determination of passive permeability is not only important for predicting oral absorption and brain penetration, but also for accurately predicting hepatic clearance. High throughput (HT) measurement of passive permeability across hepatocyte cell membrane is technically more challenging than using monolayer cell-based permeability assays. In this study, we evaluated if the HT Madin-Darby canine kidney II-low efflux (MDCKII-LE) cell monolayer permeability assay can be used as a surrogate to predict the passive permeability of hepatocytes. Apparent passive permeability of MDCKII-LE is well correlated to passive diffusion clearance of human and rat hepatocytes, suggesting that the HT MDCKII-LE assay can be used as a surrogate to estimate the passive permeability of hepatocytes. In addition, lipophilicity (Log D determined at pH 7.4) was also found to be well correlated with both MDCKII-LE and hepatocyte permeability for most compounds, hence it may serve as another permeability surrogate.
- Published
- 2014
- Full Text
- View/download PDF
18. Discovery and Preclinical Characterization of 1-Methyl-3-(4-methylpyridin-3-yl)-6-(pyridin-2-ylmethoxy)-1H-pyrazolo-[3,4-b]pyrazine (PF470): A Highly Potent, Selective, and Efficacious Metabotropic Glutamate Receptor 5 (mGluR5) Negative Allosteric Modulator
- Author
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Patrick Robert Verhoest, Susan E. Drozda, Kenneth R. Zasadny, Emily Miller, Lei Zhang, Kari R. Fonseca, Gabriela Barreiro, Patrick Trapa, Michelle Marie Claffey, Julie Cianfrogna, Marc B. Skaddan, Deborah L. Smith, Margaret M. Zaleska, Joshua R. Dunetz, Christopher L. Shaffer, Jessica Mancuso, Isao Sakurada, Gayatri Balan, Jamison B. Tuttle, Lois K. Chenard, Bruce N. Rogers, Matthew R. Reese, Antonia F. Stepan, Paul Galatsis, Brian P. Boscoe, Daniel P. Walker, Sarah Grimwood, Ann S. Wright, John T. Lazzaro, Karen J. Coffman, and Laigao Chen
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Male ,Models, Molecular ,Dyskinesia, Drug-Induced ,Cell Membrane Permeability ,Allosteric modulator ,Pyrazine ,Stereochemistry ,Receptor, Metabotropic Glutamate 5 ,Allosteric regulation ,Administration, Oral ,Biological Availability ,Pharmacology ,Madin Darby Canine Kidney Cells ,Antiparkinson Agents ,Levodopa ,Rats, Sprague-Dawley ,Radioligand Assay ,Structure-Activity Relationship ,chemistry.chemical_compound ,Dogs ,Allosteric Regulation ,Pharmacokinetics ,Drug Discovery ,Animals ,Humans ,Potency ,Hypersensitivity, Delayed ,Metabotropic glutamate receptor 5 ,MPTP ,Parkinson Disease ,Rats ,Macaca fascicularis ,HEK293 Cells ,chemistry ,Regulatory toxicology ,1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine ,Pyrazines ,Microsomes, Liver ,Pyrazoles ,Molecular Medicine - Abstract
A novel series of pyrazolopyrazines is herein disclosed as mGluR5 negative allosteric modulators (NAMs). Starting from a high-throughput screen (HTS) hit (1), a systematic structure-activity relationship (SAR) study was conducted with a specific focus on balancing pharmacological potency with physicochemical and pharmacokinetic (PK) properties. This effort led to the discovery of 1-methyl-3-(4-methylpyridin-3-yl)-6-(pyridin-2-ylmethoxy)-1H-pyrazolo[3,4-b]pyrazine (PF470, 14) as a highly potent, selective, and orally bioavailable mGluR5 NAM. Compound 14 demonstrated robust efficacy in a 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP)-rendered Parkinsonian nonhuman primate model of l-DOPA-induced dyskinesia (PD-LID). However, the progression of 14 to the clinic was terminated because of a potentially mechanism-mediated finding consistent with a delayed-type immune-mediated type IV hypersensitivity in a 90-day NHP regulatory toxicology study.
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- 2014
- Full Text
- View/download PDF
19. Translational pharmacokinetic-pharmacodynamic analysis in the pharmaceutical industry: an IQ Consortium PK-PD Discussion Group perspective
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Bianca M. Liederer, Edgar Schuck, Daniel R. Mudra, Jing Lin, Patricia Schroeder, Fan Wu, Harvey Wong, Cheng-Pang Hsu, Anu Shilpa Krishnatry, Haiqing Wang, Jerome T. Mettetal, Tonika Bohnert, Christopher R. Gibson, Alice Tsai, Marjoleen J.M.A Nijsen, Qiang Lu, Valeriu Damian-Iordache, Satyendra Suryawanshi, and Patrick Trapa
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0301 basic medicine ,Drug ,medicine.medical_specialty ,Drug Industry ,media_common.quotation_subject ,Best practice ,Drug Evaluation, Preclinical ,Pharmacology ,030226 pharmacology & pharmacy ,Models, Biological ,03 medical and health sciences ,0302 clinical medicine ,Drug Discovery ,medicine ,Animals ,Humans ,Intensive care medicine ,PK/PD models ,media_common ,Pharmaceutical industry ,Discussion group ,Pharmacokinetic pharmacodynamic ,business.industry ,Drug discovery ,030104 developmental biology ,Drug development ,business - Abstract
With inadequate efficacy being the primary cause for the attrition of drug candidates in clinical development, the need to better predict clinical efficacy earlier in the drug development process has increased in importance in the pharmaceutical industry. Here, we review current applications of translational pharmacokinetic-pharmacodynamic (PK-PD) modeling of preclinical data in the pharmaceutical industry, including best practices. Preclinical translational PK-PD modeling has been used in many therapeutic areas and has been impactful to drug development. The role of preclinical translational PK-PD modeling in drug discovery and development will continue to evolve and broaden, given that its broad implementation in the pharmaceutical industry is relatively recent and many opportunities still exist for its further application.
- Published
- 2017
20. In Vitro-In Vivo Extrapolation of Intestinal Availability for Carboxylesterase Substrates Using Portal Vein-Cannulated Monkey
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Patrick Trapa, Amanda King-Ahmad, Heather Eng, Tristan S. Maurer, Kevin Beaumont, Karen Atkinson, Li Di, and Dennis O. Scott
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Male ,Physiologically based pharmacokinetic modelling ,Enterocyte ,Synthetic membrane ,Pharmaceutical Science ,Administration, Oral ,030226 pharmacology & pharmacy ,Carboxylesterase ,Catheterization ,Madin Darby Canine Kidney Cells ,Substrate Specificity ,03 medical and health sciences ,0302 clinical medicine ,Dogs ,Pharmacokinetics ,medicine ,Animals ,Chemistry ,Portal Vein ,Prodrug ,In vitro ,Macaca fascicularis ,medicine.anatomical_structure ,Biochemistry ,Intestinal Absorption ,030220 oncology & carcinogenesis ,Female ,Efflux - Abstract
Prediction of intestinal availability (F a F g ) of carboxylesterase (CES) substrates is of critical importance in designing oral prodrugs with optimal properties, projecting human pharmacokinetics and dose, and estimating drug-drug interaction potentials. A set of ester prodrugs were evaluated using in vitro permeability (parallel artificial membrane permeability assay and Madin–Darby canine kidney cell line-low efflux) and intestinal stability (intestine S9) assays, as well as in vivo portal vein–cannulated cynomolgus monkey. In vitro–in vivo extrapolation (IVIVE) of F a F g was developed with a number of modeling approaches, including a full physiologically based pharmacokinetic (PBPK) model as well as a simplified competitive-rate analytical solution. Both methods converged as in the PBPK simulations enterocyte blood flow behaved as a sink, a key assumption in the competitive-rate analysis. For this specific compound set, the straightforward analytical solution therefore can be used to generate in vivo predictions. Strong IVIVE of F a F g was observed for cynomolgus monkey with R 2 of 0.71-0.93. The results suggested in vitro assays can be used to predict in vivo F a F g for CES substrates with high confidence.
- Published
- 2016
21. A Novel Relay Method for Determining Low-Clearance Values
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Angela Wolford, Li Di, Karen Atkinson, Beijing Tan, Patrick Trapa, Yi-an Bi, Yurong Lai, R. Scott Obach, Thomas S. McDonald, and Larry M. Tremaine
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Metabolic Clearance Rate ,Pharmaceutical Science ,Pharmacology ,Cell Fractionation ,Models, Biological ,Incubation period ,Tolbutamide ,Cytochrome P-450 Enzyme System ,In vivo ,medicine ,Humans ,Theophylline ,Incubation ,Biotransformation ,Cells, Cultured ,Cryopreservation ,Chemistry ,Reproducibility of Results ,In vitro ,Kinetics ,medicine.anatomical_structure ,Pharmaceutical Preparations ,Hepatocyte ,Hepatocytes ,Biological Assay ,Disopyramide ,Subcellular Fractions ,medicine.drug - Abstract
A novel relay method has been developed using cryopreserved human hepatocytes to measure intrinsic clearance of low-clearance compounds. The relay method involved transferring the supernatant from hepatocyte incubations to freshly thawed hepatocytes at the end of the 4-h incubation to prolong the exposure time to active enzymes in hepatocytes. An accumulative incubation time of 20 h or longer in hepatoctyes can be achieved using the method. The relay method was validated using seven commercial drugs (diazepam, disopyramide, theophylline, timolol, tolbutamide, S-warfarin, and zolmitriptan) that were metabolized by various cytochrome P450s with low human in vivo intrinsic clearance at approximately 2 to 15 ml · min⁻¹ · kg⁻¹. The results showed that the relay method produced excellent predictions of human in vivo clearance. The difference between in vitro and in vivo intrinsic clearance was within 2-fold for most compounds, which is similar to the standard prediction accuracy for moderate to high clearance compounds using hepatocytes. The relay method is a straightforward, relatively low cost, and easy-to-use new tool to address the challenges of low clearance in drug discovery and development.
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- 2012
- Full Text
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22. Strategies to minimize CNS toxicity:in vitrohigh-throughput assays and computational modeling
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Scot Richard Mente, Travis T. Wager, Jennifer L. Liras, and Patrick Trapa
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Central Nervous System ,Drug ,Chemical Phenomena ,Drug-Related Side Effects and Adverse Reactions ,media_common.quotation_subject ,Pharmacology ,Toxicology ,Blood–brain barrier ,medicine ,Animals ,Humans ,Computer Simulation ,Pharmacokinetics ,P-glycoprotein ,media_common ,Computational model ,biology ,Drug discovery ,In vitro toxicology ,General Medicine ,In vitro ,Cns toxicity ,medicine.anatomical_structure ,Blood-Brain Barrier ,biology.protein ,ATP-Binding Cassette Transporters ,Neuroscience - Abstract
Healthy functioning of the brain is dependent on the ability of the blood-brain barrier (BBB) and other central nervous system (CNS) barriers to protect the neurocompartments from potential disruptive and damaging xenobiotic agents. In vitro high-throughput (HT) screens and computational models that assess a compound's ability to pass through or disrupt the BBB have become important tools in the identification of new well-tolerated peripheral drugs and safer chemical products such as pesticides. Leveraging these HT in vitro assays and computational BBB tools together with the current understanding of brain penetration may enable the drug discovery community to minimize access of drug candidates into the CNS compartment.This article reviews aspects of the most recent in vitro and computational approaches designed to provide an early assessment of a compound's ability to access the neurocompartment. This article also provides insight into using these tools to identify compounds that have restricted access to the neurocompartment.The development of safer peripheral-acting medicines and chemical products can be achieved through prospective design and early assessment with HT assays of the BBB in conjunction with computational models. Exclusion or significantly reduced access of a compound to the neurocompartment will increase the odds of identifying a compound with reduced CNS-related adverse drug reactions. A holistic approach to compound design and evaluation that incorporates prospective design principles (e.g., optimization of physicochemical properties), leverages HT in vitro assays and integrates the use of BBB computational models may yield the 'best-in-class' peripherally acting product.
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- 2012
- Full Text
- View/download PDF
23. P4–298: Understanding the target and evaluating the consequences of gamma‐secretase modulation from in vitro models to higher‐order species
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Patrick Trapa, Douglas S. Johnson, Leslie R. Pustilnik, Michael Marconi, Kelly R. Bales, Yasong Lu, Kathleen M. Wood, Nikolay Pozdnyakov, Stefanus J. Steyn, Emily Sylvain, Ashley Robshaw, and Martin Pettersson
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Psychiatry and Mental health ,Cellular and Molecular Neuroscience ,Order (biology) ,Developmental Neuroscience ,Epidemiology ,Modulation ,Chemistry ,Health Policy ,Biophysics ,Neurology (clinical) ,Geriatrics and Gerontology ,Gamma secretase ,In vitro - Published
- 2013
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24. An investigation of metabotropic glutamate receptor 5 negative allosteric modulators in physiological and behavioral indicators of anxiety and cognition in rodents
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Chester J. Siok, Dina McGinnis, Sarah Grimwood, Radka Graf, Deborah L. Smith, Joshua Moon, Christopher L. Shaffer, Patrick Trapa, Zoe A. Hughes, and Emily O. Miller
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Metabotropic glutamate receptor 5 ,business.industry ,Allosteric regulation ,Genetics ,medicine ,Anxiety ,Cognition ,medicine.symptom ,business ,Molecular Biology ,Biochemistry ,Neuroscience ,Biotechnology - Published
- 2013
- Full Text
- View/download PDF
25. Impact of recovery on fraction unbound using equilibrium dialysis
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Tristan S. Maurer, Li Di, John P. Umland, and Patrick Trapa
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Nonspecific binding ,Chromatography ,Chemistry ,Pharmaceutical Science ,Brain ,Fraction (chemistry) ,Blood Proteins ,Models, Biological ,Rats ,Pharmaceutical Preparations ,Tissue binding ,Drug Discovery ,Animals ,Humans ,Equilibrium dialysis ,Computer Simulation ,Solubility ,Rats, Wistar ,Dialysis (biochemistry) ,Dialysis ,Protein Binding - Abstract
Historically, recovery had been used to evaluate the data quality of plasma protein binding or tissue binding obtained from equilibrium dialysis assays. Low recovery was often indicative of high nonspecific binding, instability, or low solubility. This study showed that, when equilibrium was fully established in the dialysis assay, low recovery due to nonspecific binding had no impact on the determination of fraction unbound. The conclusion was supported by the principles of the equilibrium dialysis assay, experimental data, and mathematic simulations. The results suggested that the use of recovery as an acceptance criterion for the equilibrium dialysis assay in drug discovery was too restrictive, and introduced the additional burden of repeating studies unnecessarily.
- Published
- 2011
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