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Auxin regulates many aspects of plant development and behavior, including the initiation of new outgrowth, patterning of vascular systems, control of branching, and responses to the environment. Computational models have complemented experimental studies of these processes. We review these models from two perspectives. First, we consider cellular and tissue-level models of interaction between auxin and its transporters in shoots. These models form a coherent body of results exploring different hypotheses pertinent to the patterning of new outgrowth and vascular strands. Second, we consider models operating at the level of plant organs and entire plants. We highlight techniques used to reduce the complexity of these models, which provide a path to capturing the essence of studied phenomena while running simulations efficiently.

Future crops need to be sustainable in the face of climate change. Modern barley varieties have been bred for high productivity and quality; however, they have suffered considerable genetic erosion, losing crucial genetic diversity. This renders modern cultivars vulnerable to climate change and stressful environments. We highlight the potential to tailor crops to a specific environment by utilising diversity inherent in an adapted landrace population. Tapping into natural biodiversity, while incorporating information about local environmental and climatic conditions, allows targeting of key traits and genotypes, enabling crop production in marginal soils. We outline future directions for the utilisation of genetic resources maintained in landrace collections to support sustainable agriculture through germplasm development via the use of genomics technologies and big data.

Forest restoration is mainly based on plant-soil relationships and plant species with economic potential, but those between insects and other arthropods are also important to this reestablishment. The objective was to evaluate, during 24 months, the relationships between tending ants, Hemiptera phytophagous, predators and their distribution pattern (aggregated, random or uniform). The arthropods were sampled, stored and identified and their relationships and distribution patterns calculated with the BioDiversity-Pro software. The number of tending ants and phytophagous Hemiptera, Brachymyrmex sp. and Aethalion reticulatum, Cephalotes and Aleyrodidae were positively correlated. Tending ants were negatively correlated with Sternorrhyncha predators on A. auriculiformis saplings. The distribution of arthropods was aggregated, except for Teudis sp. and Cephalocoema sp., with a random pattern. The herbivores Stereoma anchoralis, Aethalion reticulatum and Tetragonisca angustula and the predators Brachymyrmex sp. and Dolichopodidae were the most abundant arthropods. The relationships between the arthropods studied on A. auriculiformis indicate that this plant, even introduced, is suitable for programs to recover degraded areas in the savannah. Resumo A restauração florestal é baseada nas relações planta-solo e espécies vegetais com potencial econômico, mas aquelas entre insetos e outros artópodes são, também, importantes para esse processo. O objetivo foi avaliar as relações entre formigas, fitófagos Hemiptera e predadores e a distribuição (agregada, aleatória ou regular) de artrópodes, por 24 meses, em mudas de Acacia auriculiformis utilizadas na recuperação de áreas degradadas. Os artrópodes foram amostrados, armazenados e identificados e suas relações e padrões de distribuição calculados com o software BioDiversity-Pro. Os números de formigas cuidadoras se correlacionaram, positivamente, com os dos Hemiptera fitófagos Aethalion reticulatum, Brachymyrmex sp. e Cephalotes e Aleyrodidae. Insetos cuidadores de Hemiptera foram, negativamente, correlacionados com predadores Sternorrhyncha em plantas de A. auriculiformis. A distribuição dos artrópodes foi agregada, exceto Teudis sp. e Cephalocoema sp., com padrão aleatório. Aethalion reticulatum, Stereoma anchoralis e Tetragonisca angustula foram os herbívoros e Brachymyrmex sp. e Dolichopodidae os predadores mais abundantes. As relações entre os artrópodes estudados em A. auriculiformis indicam que esta planta, mesmo introduzida, é adequada para programas de recuperação de áreas degradadas no cerrado.

In the western mountainous region of Khyber Pakhtunkhwa Pakistan at the Shangla district, we found Physalis ixocarpa for the first time, not yet reported from Pakistan. Physalis ixocarpa was unidentified and has no ethnobotanical record in the flora of Pakistan. It is a member of family Solanaceae and having a close relation with Solanum tuberosum and Lycopersicon esculentum. The stem is prostrate with a dichotomous pattern of branches having leaves flower and fruits. Leaves are smooth, ovate and the margins of leaf blade dentation are poorly developed. The average length and width of the leaves are 6.50 and 3.61 cm respectively. P. ixocarpa grows to the length of 4-5 feet and an annual herb. The flowers of the plants are yellow in color and having purple color spots on the petals which are star-shaped. The round berry fruits are surrounded by persistent calyx and purple in color. The fruits are the 3-6cm in diameter. The plants are found in the different localities of district Shangla especially in Bar and Koz Kana. The life cycle of reporting plant is started in May and completed in November. Resumo Na região montanhosa ocidental de Khyber Pakhtunkhwa, Paquistão, no distrito de Shangla, encontramos Physalis ixocarpa pela primeira vez, ainda não relatada nesse país. A P. ixocarpa não foi identificada e não possui registro etnobotânico na flora do Paquistão. É membro da família Solanaceae e tem estreita relação com Solanum tuberosum e Lycopersicon esculentum. O caule é rastejante com um padrão dicotômico de ramos com folhas, flores e frutos. As folhas são lisas e ovais e as margens da dentição da lâmina foliar são pouco desenvolvidas. O comprimento e a largura médios das folhas são de 6,50 e 3,61 cm, respectivamente. A P. ixocarpa cresce aproximadamente 120-150 cm de comprimento e é uma planta anual. As flores das plantas são de cor amarela com manchas roxas nas pétalas em forma de estrela. Os frutos redondos da baga são rodeados por cálice persistente e de cor roxa. Os frutos têm 3-6 cm de diâmetro. As plantas são encontradas em diferentes localidades do distrito de Shangla, especialmente em Bar e Koz Kana. O ciclo de vida da planta reportado é iniciado em maio e concluído em novembro.

The current focus is on the overall pattern of seed storage present in the fragments of the soil of piedmont and alluvial landscapes of the environment. The present study predicted the seed banks of both soils of alluvial and piedmont zones in different ecological conditions and evaluate the potential of seeds in the restoration of both environments. The composition of the seed bank of soil is mainly affected by the alluvial environment and the structure of cleared area shows that more species of germinating annual grasses and growable seeds with the higher total number. Extant vegetation structures have an important role in the diversity of soil seed reservoirs, whose composition corresponded with the openness of the site. When in situ soil seed bank is recruited, it helps to restore only some components of the plant community in an alluvial environment. In our current research, it was confirmed that seed richness was higher in number at lower elevation (alluvial) than that at high elevation (piedmont). Seed richness showed a significant negative correlation with anions, cations, while significantly positive with altitude that suggests the richness pattern of the overall seed bank of the area is influenced by various environmental factors. Resumo O foco atual está no padrão geral de armazenamento de sementes presente nos fragmentos de solo do Piemonte e nas paisagens aluviais do meio ambiente. O presente estudo previu os bancos de sementes de ambos os solos das zonas aluvial e piemontesa em diferentes condições ecológicas e avaliou o potencial das sementes na restauração de ambos os ambientes. A composição do banco de sementes do solo é afetada principalmente pelo ambiente aluvial e a estrutura da área desmatada mostra que mais espécies de gramíneas anuais em germinação e sementes cultiváveis apresentam o maior número total. As estruturas da vegetação existente têm um papel importante na diversidade dos reservatórios de sementes do solo, cuja composição correspondeu à abertura do local. Quando o banco de sementes do solo in situ é recrutado, o mesmo ajuda a restaurar apenas alguns componentes da comunidade de plantas em um ambiente aluvial. Em nossa pesquisa atual, foi confirmado que a riqueza de sementes era maior em número em altitudes mais baixas (aluviais) do que em altitudes elevadas (Piemonte). A riqueza de sementes mostrou uma correlação negativa significativa com ânions, cátions, enquanto significativamente positiva com a altitude, o que sugere que o padrão de riqueza do banco geral de sementes da área é influenciado por vários fatores ambientais.

The present study was carried out in Hayat Abad Industrial Estate located in Peshawar to assess the levels of cadmium (Cd) that were present in the soil as well as the plant parts (Roots and shoots). To evaluate the phytoremediation potential of the plants different factors i.e. Bioconcentration Factor (BCF), Translocation Factor (TF), and Bioaccumulation Coefficient were determined. These plants were grown in their native habitats (BAC). We have analysed, cadmium concentration from soil which are collected from 50 different locations ranged from 11.54 mg/Kg (the lowest) to 89.80 mg/Kg (highest). The maximum concentration (89.80 mg/Kg) of cadmium was found in HIE-ST-16L Marble City and HIE-ST-7 Bryon Pharma (88.51 mg/Kg) while its minimum concentration (12.47 mg/Kg) were detected in the soil of Site (HIE-ST-14L Royal PVC Pipe) and (11.54 mg/Kg) at the site (HIE-ST-11 Aries Pharma). Most plant species showed huge potential for plant based approaches like phyto-extraction and phytoremediation. They also showed the potential for phyto-stabilization as well. Based on the concentration of cadmium the most efficient plants for phytoextraction were Cnicus benedictus, Parthenium hysterophorus, Verbesina encelioides, Conyza canadensis, Xanthium strumarium, Chenopodium album, Amaranthus viridis, Chenopodiastrum murale, Prosopis juliflora, Convolvulus arvensis, Stellaria media, Arenaria serpyllifolia, Cerastium dichotomum, Chrozophora tinctoria, Mirabilis jalapa, Medicago polymorpha, Lathyrus aphaca, Dalbergia sissoo, Melilotus indicus and Anagallis arvensis. The cadmium heavy metals in the examined soil were effectively removed by these plant species. Cerastium dichotomum, and Chenopodium murale were reported to be effective in phyto-stabilizing Cd based on concentrations of selected metals in roots and BCFs, TFs, and BACs values. Resumo O presente estudo foi realizado em Hayat Abad Industrial Estate, localizado em Peshawar, para avaliar os níveis de cádmio (Cd) que estavam presentes no solo, bem como nas partes da planta (raízes e brotos). Para avaliar o potencial de fitorremediação das plantas foram determinados diferentes fatores, ou seja, Fator de Bioconcentração (BCF), Fator de Translocação (TF) e Coeficiente de Bioacumulação. Essas plantas foram cultivadas em seus habitats nativos (BAC). Analisamos a concentração de cádmio do solo coletada em 50 locais diferentes, variando de 11,54 mg/Kg (o mais baixo) a 89,80 mg/Kg (o mais alto). A concentração máxima (89,80 mg/Kg) de cádmio foi encontrada em HIE-ST-16L Marble City e HIE-ST-7 Bryon Pharma (88,51 mg/Kg) enquanto sua concentração mínima (12,47 mg/Kg) foi detectada no solo do local (HIE-ST-14L Royal PVC Pipe) e (11,54 mg/Kg) no local (HIE-ST-11 Aries Pharma). A maioria das espécies de plantas mostrou um enorme potencial para abordagens baseadas em plantas, como fitoextração e fitorremediação. Eles também mostraram o potencial de fitoestabilização. Com base na concentração de cádmio, as plantas mais eficientes para fitoextração foram Cnicus benedictus, Parthenium hysterophorus, Verbesina encelioides, Conyza canadensis, Xanthium strumarium, Chenopodium album, Amaranthus viridis, Chenopodiastrum murale, Prosopis juliflora, Convolvulus arvensis, Stellaria media, Arenaria serpyllifolia, Cerastium dichotomum, Chrozophora tinctoria, Mirabilis jalapa, Medicago polymorpha, Lathyrus aphaca, Dalbergia sissoo, Melilotus indicus e Anagallis arvensis. Os metais pesados de cádmio no solo examinado foram efetivamente removidos por essas espécies de plantas. Cerastium dichotomum e Chenopodium murale foram relatados como eficazes na fitoestabilização do Cd com base nas concentrações de metais selecionados nas raízes e nos valores de BCFs, TFs e BACs.

Movement of cellulose synthase particles have so far been observed on the plant epidermis that are amenable to confocal imaging, yielding appreciable signal and resolution to observe small plasma membrane-localised particles. Presented here is a method, using airyscan confocal microscopy, that permits similar information to be obtained at depth within the developing protoxylem vessels of intact roots.

Gardening experiments are timely in the context of what many now call the Anthropocene, an era that highlights questions of how humans collectively relate to the larger Earth systems in which we are embedded. In “Ecocriticism on the Edge: The Anthropocene as a Threshold Concept”, Timothy Clark reflects on the “unreadability” of the Anthropocene. He invites ecocritics to address this challenge by practicing “scale framing,” reading texts in variable and increasingly broad scales, and engaging the contradictions that emerge. We applied a scale framing approach to a story of relationships with “Silphium integrifolium” in an experimental gardening project. Silphium is a native North American perennial prairie plant being domesticated as a future oilseed crop. We are researchers and participants in a civic science project, in which individual garden sites are designed to collect data on and conserve silphium ecotypes while being linked into a wider network. In particular, we analyzed a civic science video story created by Ellie Irons called “Un-Lawning with Silphium.” Through our ecocritical analysis, we generated a framework to visualize nested and cross-scalar relationships in gardening projects. This framework could help inform the design and assessment of experimental gardening projects that feature the arts and humanities (e.g., digital narratives, ecocriticism, and pedagogy) and connect them with the natural and social sciences (e.g., plant breeding, botany, geography, and ecology) through transdisciplinary and participatory research methodologies for public engagement (e.g., civic science). We found that civic science gardening with silphium, and other gardening experiments in the Anthropocene, can guide public sensory engagements with scale, help spark recognition and investigation of contradictory scale effects, and motivate us to imagine and build relationships of caring responsibility., Los experimentos de jardinería son oportunos en la época que muchos denominan el Antropoceno. En esta época resaltan preguntas sobre cómo los seres humanos se relacionan con los sistemas terrestres que los rodean. En “Ecocriticism on the Edge: The Anthropocene as a Threshold Concept [Ecocrítica al borde: El Antropoceno como concepto umbral]”, Timothy Clark reflexiona sobre la "ilegibilidad" del Antropoceno. Invita a los ecocríticos a afrontar este desafío utilizando “scale framing” [marco de escalas], leyendo textos utilizando marcos distintos y cada vez más grandes y analizando las contradicciones que surgen entre escalas. Aplicamos este enfoque a historias de relaciones con “Silphium integrifolium” que surgen en un proyecto experimental de jardinería. El silphium, una planta perenne originaria de las praderas norteamericanas, se está domesticando como futuro cultivo oleaginoso. Somos investigadores y participantes en un proyecto de ciencia cívica en el que se diseñan huertos individuales mientras se participa dentro de una red más amplia, para recopilar datos sobre los ecotipos de silphium a fin de conservarlos. Analizamos "Un-Lawning with Silphium", un vídeo de ciencia cívica creado por Ellie Irons. A través de nuestro análisis ecocrítico, generamos un marco conceptual para visualizar las relaciones anidadas y trans-escalares en proyectos de jardinería. Este marco conceptual podría orientar al diseño y la evaluación de proyectos experimentales de jardinería que incorporen las artes y humanidades (como narrativas digitales, ecocrítica y pedagogía) y los integran con las ciencias (como fitomejoramiento, botánica, geografía y ecología), empleando metodologías transdisciplinarias y participativas para generar un compromiso público (ciencia cívica). Descubrimos que la ciencia cívica mediante la j ardinería de silphium, y otros experimentos de jardinería en el Antropoceno, invitan a la reflexión pública sobre la escala mediante actividades sensoriales, fomentan el reconocimiento y la investigación de los efectos contradictorios de la escala, e impulsan la imaginación y la construcción de relaciones solidarias.

Plant–nematode interactions are mainly considered from the negative aspect with a focus on plant-parasitic nematodes (PPNs), which is justified considering the agronomic losses caused by PPNs. Despite the fact that PPNs are outnumbered by nonparasitic free-living nematodes (FLNs), the functional importance of FLNs, especially with regard to plant performance, remains largely unknown. Here, we provide a comprehensive overview and most recent insights into soil nematodes by showing direct and indirect links of both PPNs and FLNs with plant performance. We especially emphasize the knowledge gaps and potential of FLNs as important indirect players in driving plant performance such as stimulating the resistance to pests via improving the disease suppressive activity of the rhizobiome. Together, we present a holistic view of soil nematodes as positive and negative contributors to plant performance, accentuating the positive but underexplored role of FLNs.

Despite seminal papers that stress the significance of silicon (Si) in plant biology and ecology, most studies focus on manipulations of Si supply and mitigation of stresses. The ecological significance of Si varies with different levels of biological organization, and remains hard to capture. We show that the costs of Si accumulation are greater than is currently acknowledged, and discuss potential links between Si and fitness components (growth, survival, reproduction), environment, and ecosystem functioning. We suggest that Si is more important in trait-based ecology than is currently recognized. Si potentially plays a significant role in many aspects of plant ecology, but knowledge gaps prevent us from understanding its possible contribution to the success of some clades and the expansion of specific biomes.

The metamicrobiome is an integrated concept to study carbon and nutrient recycling in ecosystems. Decomposition of plant-derived matter by free-living microbes and fire – two key recycling pathways – are highly sensitive to global change. Mutualistic associations of microbes with plants and animals strongly reduce this sensitivity. By solving a fundamental allometric trade-off between metabolic and homeostatic capacity, these mutualisms enable continued recycling of plant matter where and when conditions are unfavourable for the free-living microbiome. A diverse metamicrobiome – where multiple plant- and animal-associated microbiomes complement the free-living microbiome – thus enhances homeostasis of ecosystem recycling rates in variable environments. Research into metamicrobiome structure and functioning in ecosystems is therefore important for progress towards understanding environmental change.

The histone variant H2A.Z plays a critical role in chromatin-based processes such as transcription, replication, and repair in eukaryotes. Although many H2A.Z-associated processes and features are conserved in plants and animals, a distinguishing feature of plant chromatin is the enrichment of H2A.Z in the bodies of genes that exhibit dynamic expression, particularly in response to differentiation and the environment. Recent work sheds new light on the plant machinery that enables dynamic changes in H2A.Z enrichment and identifies additional chromatin-based pathways that contribute to transcriptional properties of H2A.Z-enriched chromatin. In particular, analysis of a variety of responsive loci reveals a repressive role for H2A.Z in expression of responsive genes and identifies roles for SWR1 and INO80 chromatin remodelers in enabling dynamic regulation of H2A.Z levels and transcription. These studies lay the groundwork for understanding how this ancient histone variant is harnessed by plants to enable responsive and dynamic gene expression (Graphical Abstract).

Salicylic acid (SA) plays a pivotal role in plant response to biotic and abiotic stress. Several core SA signaling regulators and key proteins in SA biosynthesis have been well characterized. However, much remains unknown about the origin, evolution, and early diversification of core elements in plant SA signaling and biosynthesis. In this study, we identified 10 core protein families in SA signaling and biosynthesis across green plant lineages. We found that the key SA signaling receptors, the nonexpresser of pathogenesis-related (NPR) proteins, originated in the most recent common ancestor (MRCA) of land plants and formed divergent groups in the ancestor of seed plants. However, key transcription factors for SA signaling, TGACG motif-binding proteins (TGAs), originated in the MRCA of streptophytes, arguing for the stepwise evolution of core SA signaling in plants. Different from the assembly of the core SA signaling pathway in the ancestor of seed plants, SA exists extensively in green plants, including chlorophytes and streptophyte algae. However, the full isochorismate synthase (ICS)-based SA synthesis pathway was first assembled in the MRCA of land plants. We further revealed that the ancient abnormal inflorescence meristem 1 (AIM1)-based β-oxidation pathway is crucial for the biosynthesis of SA in chlorophyte algae, and this biosynthesis pathway may have facilitated the adaptation of early-diverging green algae to the high-light-intensity environment on land. Taken together, our findings provide significant insights into the early evolution and diversification of plant SA signaling and biosynthesis pathways, highlighting a crucial role of SA in stress tolerance during plant terrestrialization.

Non-target organisms are globally exposed to herbicides. While many herbicides - for example, glyphosate - were initially considered safe, increasing evidence demonstrates that they have profound effects on ecosystem functions via altered microbial communities. We provide a comprehensive framework on how herbicide residues may modulate ecosystem-level outcomes via alteration of microbiomes. The changes in soil microbiome are likely to influence key nutrient cycling and plant-soil processes. Herbicide-altered microbiome affects plant and animal performance and can influence trophic interactions such as herbivory and pollination. These changes are expected to lead to ecosystem and even evolutionary consequences for both microbes and hosts. Tackling the threats caused by agrochemicals to ecosystem functions and services requires tools and solutions based on a comprehensive understanding of microbe-mediated risks.

Hemicelluloses, a major component of plant cell walls, are a non-cellulosic heteropolysaccharide composed of several distinct sugars that is second in abundance to cellulose, which are one of the most abundant and cheapest renewable resources on earth. Hemicelluloses structure is complex and its chemical structure varies greatly among the different plant species. In addition to its wide use in production of feed and other chemical materials, hemicelluloses are known for its remarkable biological activities that remain largely underutilised to date. Therefore, comprehensive investigations of hemicelluloses structural and biological properties would be helpful for achieving rational utilisation and high-value conversion of this underutilised substance into agents with enhanced health benefits for incorporation in drugs and health foods. In this review, details of diverse research initiatives that have enhanced our understanding of hemicelluloses properties are summarised, including hemicelluloses sources, extraction and purification methods, structural characteristics and biological activities. Furthermore, hemicelluloses structure-activity relationships and new directions for future hemicelluloses research studies are discussed.

Brown algae are a group of multicellular, heterokont algae that have convergently evolved developmental complexity that rivals that of embryophytes, animals or fungi. Early in development, brown algal zygotes establish a basal and an apical pole, which will become respectively the basal system (holdfast) and the apical system (thallus) of the adult alga. Brown algae are interesting models for understanding the establishment of cell polarity in a broad evolutionary context, because they exhibit a large diversity of life cycles, reproductive strategies and, importantly, their zygotes are produced in large quantities free of parental tissue, with symmetry breaking and asymmetric division taking place in a highly synchronous manner. This review describes the current knowledge about the establishment of the apical-basal axis in the model brown seaweeds Ectocarpus, Dictyota, Fucus and Saccharina, highlighting the advantages and specific interests of each system. Ectocarpus is a genetic model system that allows access to the molecular basis of early development and life-cycle control over apical-basal polarity. The oogamous brown alga Fucus, together with emerging comparative models Dictyota and Saccharina, emphasize the diversity of strategies of symmetry breaking in determining a cell polarity vector in brown algae. A comparison with symmetry-breaking mechanisms in land plants, animals and fungi, reveals that the one-step zygote polarisation of Fucus compares well to Saccharomyces budding and Arabidopsis stomata development, while the two-phased symmetry breaking in the Dictyota zygote compares to Schizosaccharomyces fission, the Caenorhabditis anterior-posterior zygote polarisation and Arabidopsis prolate pollen polarisation. The apical-basal patterning in Saccharina zygotes on the other hand, may be seen as analogous to that of land plants. Overall, brown algae have the potential to bring exciting new information on how a single cell gives rise to an entire complex body plan.

The plant microbiota is known to protect its host against invasion by plant pathogens. Recent studies have indicated that the microbiota of indoor plants is transmitted to the local built environment where it might fulfill yet unexplored functions. A better understanding of the interplay of such microbial communities with human pathogens might provide novel cues related to natural inhibition of them.We studied the plant microbiota of two model indoor plants, Musa acuminata and Chlorophytum comosum, and their effect on human pathogens. The main objective was to identify mechanisms by which the microbiota of indoor plants inhibits human-pathogenic bacteria.Microbial communities and functioning were investigated using a comprehensive set of experiments and methods combining amplicon and shotgun metagenomic analyses with results from interaction assays.A diverse microbial community was found to be present on Musa and Chlorophytum grown in different indoor environments; the datasets comprised 1066 bacterial, 1261 fungal, and 358 archaeal ASVs. Bacterial communities were specific for each plant species, whereas fungal and archaeal communities were primarily shaped by the built environment. Sphingomonas and Bacillus were found to be prevalent components of a ubiquitous core microbiome in the two model plants; they are well-known for antagonistic activity towards plant pathogens. Interaction assays indicated that they can also antagonize opportunistic human pathogens. Moreover, the native plant microbiomes harbored a broad spectrum of biosynthetic gene clusters, and in parallel, a variety of antimicrobial resistance genes. By conducting comparative metagenomic analyses between plants and abiotic surfaces, we found that the phyllosphere microbiota harbors features that are clearly distinguishable from the surrounding abiotic surfaces.Naturally occurring phyllosphere bacteria can potentially act as a protective shield against opportunistic human pathogens. This knowledge and the underlying mechanisms can provide an important basis to establish a healthy microbiome in built environments.

In our understanding of the world, we have become accustomed to the fact that plants are speechless. The combination of sound and crop concepts evokes tree noise, dry leaf noise, high grass or breaking branches. Then the world of flora stimulated by the wind generates sounds. However, it turns out that these injuries will have to change because the source of sound can also be the interior of the nature that surrounds us. The last decade of research has revealed not only the reception and production of acoustic signals, but also the response to music as plant properties. The observations also indicate that the test subjects communicate with each other. Audio plant products are the starting point for considering sound analysis based on semicotics for the expanding spectrum of recording possibilities and ways of using sound. Attempts were made to locate custom audio sources in the audio space. Important there are also questions about the function and importance of sound, the relationship between esthetic, communication and cognitive values and the interpretation plane. W naszym obrazie świata przyzwyczailiśmy się do tego, że roślinność jest niema. Zestawienie pojęć dźwięku i rośliny przywołuje w pamięci szum drzew, odgłos suchych liści, wysokich traw czy łamiących się gałęzi. Wówczas świat flory pobudzony przez wiatr generuje dźwięki. Okazuje się jednak, że te wyobrażenia będą musiały ulec zmianie, ponieważ źródłem dźwięku może być także wnętrze otaczającej nas natury. Ostatnia dekada badań tej materii ujawniła nie tylko odbieranie i wytwarzanie sygnałów akustycznych, ale również reagowanie na muzykę jako właściwości roślin. Obserwacje wskazują także na wzajemne komunikowanie się badanych obiektów. Audialne fenomeny o roślinnym pochodzeniu stanowią punkt wyjścia do rozważań na temat analizy dźwięków w oparciu o teorie semiotyki. Wobec poszerzającego się spektrum możliwości rejestracji i sposobów wykorzystania dźwięku dokonano próby umiejscowienia niestandardowych źródeł dźwięku w przestrzeni audialnej. Namysłowi towarzyszą pytania o funkcje i znaczenie dźwięku, relacje walorów estetycznych, komunikacyjnych i poznawczych oraz płaszczyzny interpretacji.

Traits are the intermediate by which species respond to environmental filters and influence ecosystem functions. With the myriad of biogeochemical processes controlled by fungi, the past decade has witnessed a rising interest in applying trait-based approaches, core to the toolkit of plant and animal ecophysiologists, to fungi. One of the first challenges to tackle when working on fungal ecophysiology is to circumscribe the very definition of what we consider a fungal trait. Traits are characteristics/features possessed by an individual that can influence how it interacts with its environment. Here, the individual scale is both important, and problematic. Important because the very goal of comparative ecology is to measure traits on individuals belonging to known species. This allows us to populate trait databases, and syntheses of such databases can reveal key trade-offs and trait syndromes that govern species' life-histories. The scale of the individual is problematic, however, because it is hard to define for soil fungi, and because a rare minority of fungi can be sampled at the individual scale in the environment (e.g., macroscopic sporocarps, ectomycorrhizal root tips, lichen thalli). Beyond this minority, the individual organisms can only be accessed/sampled through establishing fungal cultures, which probably represents one of the main bottlenecks in the development of fungal trait databases. In this issue of Molecular Ecology, Zhang et al. (2022) show how interesting insights in fungal trait-based ecology can be gained by working at the community level.

Maintaining proper DNA methylation levels in the genome requires active demethylation of DNA. However, removing the methyl group from a modified cytosine is chemically difficult and therefore, the underlying mechanism of demethylation had remained unclear for many years. The discovery of the first eukaryotic DNA demethylase, Arabidopsis thaliana REPRESSOR OF SILENCING 1 (ROS1), led to elucidation of the 5-methylcytosine base excision repair mechanism of active DNA demethylation. In the 20 years since ROS1 was discovered, our understanding of this active DNA demethylation pathway, as well as its regulation and biological functions in plants, has greatly expanded. These exciting developments have laid the groundwork for further dissecting the regulatory mechanisms of active DNA demethylation, with potential applications in epigenome editing to facilitate crop breeding and gene therapy.

Biological biocides have the potential to reduce plant biotic stresses and boost development, but they tend to be unstable and degrade quickly. BCAs inhibit plant diseases and enhance crop productivity while being eco-friendly. Encapsulation research has increased in recent decades in response to the growing need for BCAs. These formulations can address the difficulties of free-form formulations. They can improve the efficacy of BCAs by prolonging their shelf life and offering the controlled release of biological components. Using a novel approach, they can be a potential platform for controlling biotic stressors, especially plant pathogens. Chitosan and alginate are two important biopolymers with great potential in enclosing BCAs. These can also be used alone for encapsulation, but their application in composite form eliminates the disadvantages of using them alone. However, several other biopolymers have significant roles in formulating BCAs, such as gums, gelatin, starch, and pectin. Given the amazing potential of these new formulations, this comprehensive review highlights more recent developments about encapsulating BCAs based on nano and micro-materials and their appliances in reducing plant biotic stressors. These prospects might provide the foundation for future opportunities to expand the efficacy and application BCAs by formulation technologies to combat plant pathogens.

Plant polysaccharides are components of plant cell walls and/or store energy. However, this oversimplified classification neglects the fact that some cell wall polysaccharides and glycoproteins can localize outside the relatively sharp boundaries of the apoplastic moiety, where they adopt functions not directly related to the cell wall. Such polysaccharide multifunctionality (or 'moonlighting') is overlooked in current research, and in most cases the underlying mechanisms that give rise to unconventional ex muro trafficking, targeting, and functions of polysaccharides and glycoproteins remain elusive. This review highlights major examples of the extramural occurrence of various glycan cell wall components, discusses the possible significance and implications of these phenomena for plant physiology, and lists exciting open questions to be addressed by future research.

The objective of this review article is to present the utility of Sporopollenin, a natural biopolymer, for a wide range of applications. Sporopollenin is a ubiquitous natural polymer and chief ingredient of plant pollen grains, spores and it is chemically inert. Sporopollenin has a beautifully sculpted, decorated, and nano porous surface that is species unique. In both organic and aqueous solutions, it is stable. Purified sporopollenin keeps its spore or pollen particle shape, size, and surface properties while remaining an empty shell (sporopollenin microcapsules). Sporopollenin microcapsules and Sporopollenin Exine Shells (SEC) from pollen grains of plants (Angiosperms), spores of Bryophytes, Pteridophytes Gymnosperms and fungi have been developed as new biomaterials for drug/vaccine delivery, catalyst support, and heavy metal removal, among other sustainable applications. This review paper could pave the way for further research into sporopollenin production and the development of novel biomimetic polymers with desirable inert characteristics. The authors anticipate that this unique renewable polymer, which is abundant in nature and can be made from a variety of plants and fungal sources, will have biomedical applications contributing to sustainability in the future.

The oxidation-reduction (redox) status of the cell influences or regulates transcription factors and enzymes involved in epigenetic changes, such as DNA methylation, histone protein modifications, and chromatin structure and remodeling. These changes are crucial regulators of chromatin architecture, leading to differential gene expression in eukaryotes. But the cell's redox homeostasis is difficult to sustain since the production of reactive oxygen species (ROS) and reactive nitrogen species (RNS) is not equal in plants at different developmental stages and under abiotic stress conditions. Exceeding optimum ROS and RNS levels leads to oxidative stress and thus alters the redox status of the cell. Consequently, this alteration modulates intracellular epigenetic modifications that either mitigate or mediate the plant growth and stress response.Recent studies suggest that the altered redox status of the cell reform the cellular functions and epigenetic changes. Recent high-throughput techniques have also greatly advanced redox-mediated gene expression discovery, but the integrated view of the redox status, and its associations with epigenetic changes and subsequent gene expression in plants are still scarce. In this review, we accordingly focus on how the redox status of the cell affects epigenetic modifications in plants under abiotic stress conditions and during developmental processes. This is a first comprehensive review on the redox status of the cell covering the redox components and signaling, redox status alters the post-translational modification of proteins, intracellular epigenetic modifications, redox interplay during DNA methylation, redox regulation of histone acetylation and methylation, redox regulation of miRNA biogenesis, redox regulation of chromatin structure and remodeling and conclusion, future perspectives and biotechnological opportunities for the future development of the plants.The interaction of redox mediators such as ROS, RNS and antioxidants regulates redox homeostasis and redox-mediated epigenetic changes. We discuss how redox mediators modulate epigenetic changes and show the opportunities for smart use of the redox status of the cell in plant development and abiotic stress adaptation. However, how a redox mediator triggers epigenetic modification without activating other redox mediators remains yet unknown.

Inflammation is a natural process that occurs in the organism in response to harmful external agents. Despite being considered beneficial, exaggerated cases can cause severe problems for the body. The main inflammatory manifestations are pain, increased temperature, edema, decreased mobility, and quality of life for affected individuals. Diseases such as arthritis, cancer, allergies, infections, arteriosclerosis, neurodegenerative diseases, and metabolic problems are mainly characterized by an exaggerated inflammatory response. Inflammation is related to two categories of substances: pro- and anti-inflammatory mediators. Among the pro-inflammatory mediators is Tumor Necrosis Factor-α (TNF-α). It is associated with immune diseases, cancer, and psychiatric disorders which increase its excretion. Thus, it becomes a target widely used in discovering new antiinflammatory drugs. In this context, secondary metabolites biosynthesized by plants have been used for thousands of years and continue to be one of the primary sources of new drug scaffolds against inflammatory diseases. To decrease costs related to the drug discovery process, Computer-Aided Drug Design (CADD) techniques are broadly explored to increase the chances of success. In this review, the main natural compounds derived from alkaloids, flavonoids, terpene, and polyphenols as promising TNF-α inhibitors will be discussed. Finally, we applied a molecular modeling protocol involving all compounds described here, suggesting that their interactions with Tyr59, Tyr119, Tyr151, Leu57, and Gly121 residues are essential for the activity. Such findings can be useful for research groups worldwide to design new anti-inflammatory TNF-α inhibitors.

The homeostasis of hydrogen peroxide (H

The environmental adaptation of eudicots is the most reasonable explanation for why they compose the largest clade of modern plants (70% of angiosperms), which indicates that the basal eudicots would be valuable and helpful to study their survival and ability to thrive throughout evolutionary processes. Here, we detected two whole-genome duplication (WGD) events in the high-quality assembled Akebia trifoliata genome (652.73 Mb) with 24 138 protein-coding genes based on the evidence of intragenomic and intergenomic collinearity, synonymous substitution rate (K

The widespread abuse of "legal high" psychoactive plants continues to be of global concern because of their negative impacts on public health and safety. In forensic science, a major challenge in controlling these substances is the paucity of methods to rapidly identify them. We report the development of the

The field study was undertaken to examine the potential for adverse effects of transgenic soybean expressing bioactive human epidermal growth factor (with tolerance to the herbicide glufosinate, PPT) on the abundance and diversity of plant-dwelling arthropods by comparing with those of a non-GM parental cultivar, Gwangan soybean. Field surveys of soybean fields were carried out over two consecutive years, 2016 and 2017 at Ochang and Jeonju, Korea. The number of captured individuals associated with either of EGF and Gwangan soybean plants increased in 2017 compared with 2016 in both Ochang and Jeonju. During the survey period, the diversity and richness of the occurred insects and arachnids increased, dominance decreased, and the evenness of the insects remained static. The insects of Hymenoptera Order occurred most often comprised 25.4% of total captured insect pests. On the contrary, natural enemy from Hymenoptera Order and other insects from Diptera Order occurred more frequently (29.9% and 19.0%, respectively) in both the survey regions during the study periods. The score from PROXSCAL multidimensional scaling using combined data showed that the occurrence of insects and arachnids were separated due to their cultivation regions and years, irrespective of soybean cultivars. Consequently, the results indicated that there happened no notable change in the composition of arthropod communities in soybean agroecosystem due to GM event in soybean expressing EGF.

Drought stress is an increasing concern because of climate change and increasing demands on water for agriculture. There are still many unknowns about how plants sense and respond to water limitation, including which genes and cellular mechanisms are impactful for ecology and crop improvement in drought-prone environments. A better understanding of plant drought resistance will require integration of several research disciplines. A common set of parameters to describe plant water status and quantify drought severity can enhance data interpretation and research integration across the research disciplines involved in understanding drought resistance and would be especially useful in integrating the flood of genomic data being generated in drought studies. Water potential (ψw) is a physical measure of the free energy status of water that, along with related physiological measurements, allows unambiguous description of plant water status that can apply across various soil types and environmental conditions. ψw and related physiological parameters can be measured with relatively modest investment in equipment and effort. Thus, we propose that increased use of ψw as a fundamental descriptor of plant water status can enhance the insight gained from many drought-related experiments and facilitate data integration and sharing across laboratories and research disciplines.

Climate warming is changing plant sexual reproduction, having consequences for species distribution and community dynamics. However, the magnitude and direction of plant reproductive efforts (e.g., number of flowers) and success (e.g., number and mass of fruits or seeds) in response to warming have not been well-characterized. Here, we generated a global dataset of simulated warming experiments, consisting of 477 pairwise comparisons for 164 terrestrial species. We found evidence that warming overall decreased fruit number and increased seed mass, but little evidence that warming influenced flower number, fruit mass, or seed number. The warming effects on seed mass were regulated by the pollination type, and insect-pollinated plants exhibited a stronger response to warming than wind-pollinated plants. We found strong evidence that warming increased the mass of seeds for the nondominant species but no evidence of this for the dominant species. There was no evidence that phylogenetic relatedness explained the effects of warming on plant reproductive effort and success. In addition, the effects of warming on flowering onset negatively related to the responses in terms of the number of fruits and seeds to warming, revealing a cascading effect of plant reproductive development. These findings provide the first quantification of the response of terrestrial plant sexual reproduction to warming and suggest that plants may increase their fitness by producing heavier seeds under a warming climate.

Plant secondary metabolites (SMs) play crucial roles in plant-environment interactions and contribute greatly to human health. Global climate changes are expected to dramatically affect plant secondary metabolism, yet a systematic understanding of such influences is still lacking. Here, we employed medicinal and aromatic plants (MAAPs) as model plant taxa and performed a meta-analysis from 360 publications using 1828 paired observations to assess the responses of different SMs levels and the accompanying plant traits to elevated carbon dioxide (eCO

Agriculture and ecosystem are negatively influenced by the abiotic stresses which create solemn pressures on plants as they are sessile in nature leading to excessive losses in economy. For maintenance of sustainable agriculture and to fulfil the cumulative call of food for rapidly growing population worldwide, it becomes crucial to protects the crop plants from climate fluctuations. Plants fight back against these challenges by generation of redox molecules comprising reactive oxygen species (ROS) and reactive nitrogen species (RNS) and cause modulation at cellular, physiological and molecular levels. Nitric oxide (NO) deliver tolerance to several biotic and abiotic stresses in plants by acting as signalling molecule or free radicals. It is also intricated in several developmental processes in plants using different mechanisms. Supplementation of exogenous NO reduce toxicity of abiotic stresses and provide resistance. In this review article, we summarize the recent research studies (five years) depicting the functional role of NO in alleviation of abiotic stresses such as drought, cold, heat, heavy metals and flooding. Moreover, by investigating studies found that among heavy metals works associated with Hg, Pb, and Cr is limited comparatively. Additionally, role of NO in abiotic stress resistance such as cold, freezing and heat stress less/poorly investigated. Consequently, further emphasis should be diverted towards how NO can facilitate protection against these stresses. In recent studies mostly beneficial role of NO against abiotic challenges have been elucidated by observing physiological/biochemical parameters but relatively inadequate research done at the transcripts level or gene regulation subsequently researchers should include it in future. Lastly, brief outline and an evaluative discussion on the present information and future prospective provided. Altogether, these inclusive experimental agendas could facilitate in future to produce climate tolerant plants. This will help to confront the constant fluctuations in the environment and to reduce the challenges in way of agriculture productivity and global food demands.

Reproductive fitness of individual plants depends on the timing of flowering, especially in mate-limited populations, such as those in fragmented habitats. When flowering time traits are associated with differential reproductive success, the narrow-sense heritability (hWe evaluated the hWe found substantial hSubstantial heritabilities in this population imply the capacity for a response to natural selection, while also suggesting the potential for differential contributions to adaptive evolution among seasons.

Agricultural seed-coat treatments are prone to drift as seed coatings may scuff off and become incorporated into field particles during planting. Vacuum planters release exhaust and kick up field dust, laden with systemic pesticides that blow across the landscape, is taken up, and later expressed in the nectar and pollen of surrounding plants. Offsite movements and nontarget exposure to systemic pesticides need attention and determining how and at what exposure levels pollinators are exposed is of critical importance. Unfortunately, this requires extensive and costly instrumental analyses. Here, we describe dust sampling and a modified, rapid method based on liquid chromatography in tandem with mass spectrometry-based method for quantification of a broad array of agrochemicals in captured dust particles. This method increases ability to detect potential exposure to multiple agrochemicals and allows researchers to better address critical knowledge gaps in the environmental fate, off-target movement, and persistence of conventional seed treatments.

Plant pathogens damage crops and threaten global food security. Plants have evolved complex defense networks against pathogens, using crosstalk among various signaling pathways. Key regulators conferring plant immunity through signaling pathways include protein-coding genes and non-coding RNAs (ncRNAs). The discovery of ncRNAs in plant transcriptomes was first considered "transcriptional noise". Recent reviews have highlighted the importance of non-coding RNAs. However, understanding interactions among different types of noncoding RNAs requires additional research. This review attempts to consider how long-ncRNAs, small-ncRNAs and circular RNAs interact in response to pathogenic diseases within different plant species. Developments within genomics and bioinformatics could lead to the further discovery of plant ncRNAs, knowledge of their biological roles, as well as an understanding of their importance in exploiting the recent molecular-based technologies for crop protection.

Abstract: Among conventional treatment methodologies, surgery, hyperthermia, radiation, and chemotherapy have become integral components of treatment for most cancers. Radiation therapy in the treatment of many malignancies is always the better choice over surgery and chemotherapy. Ionizing radiation produced as a consequence of using these radiations has always been a concern in these treatment methods. Synthetic radio-protectors with their inherent limitations are being used to date to reduce the mortality of these radiations; still, it compromises the clinical efficacy of these administrations. Hence, investigations for alternative methods, including natural resources such as plant and fruit extracts, are being explored to treat radiation-mediated ailments. The present review article endeavors to provide a comprehensive, updated, and chronological account of these promising plants and fruit extracts and their bioactive principles as radio-protectors. We present the merits and demerits of radiation therapy and cell stress generation of reactive oxygen species (ROS) associated with radiation need and availability of radio-protectors. Finally, we discuss green-based bioactive compounds that have radioprotective properties.

Stress results in the enhanced accumulation of reactive oxygen species (ROS) in plants, altering the redox state of cells and triggering the activation of multiple defense and acclimation mechanisms. In addition to activating ROS and redox responses in tissues that are directly subjected to stress (termed 'local' tissues), the sensing of stress in plants triggers different systemic signals that travel to other parts of the plant (termed 'systemic' tissues) and activate acclimation and defense mechanisms in them; even before they are subjected to stress. Among the different systemic signals triggered by stress in plants are electric, calcium, ROS, and redox waves that are mobilized in a cell-to-cell fashion from local to systemic tissues over long distances, sometimes at speeds of up to several millimeters per second. Here, we discuss new studies that identified various molecular mechanisms and proteins involved in mediating systemic signals in plants. In addition, we highlight recent studies that are beginning to unravel the mode of integration and hierarchy of the different systemic signals and underline open questions that require further attention. Unraveling the role of ROS and redox in plant stress responses is highly important for the development of climate resilient crops.

We explored the polyamine (PA) metabolic pathway genes in barley (Hv) to understand plant development and stress adaptation in Gramineae crops with emphasis on leaf senescence. Bioinformatics and functional genomics tools were utilized for genome-wide identification, comprehensive gene features, evolution, development and stress effects on the expression of the polyamine metabolic pathway gene families (PMGs). Three S-adenosylmethionine decarboxylases (HvSAMDCs), two ornithine decarboxylase, one arginine decarboxylase, one spermidine synthase (HvSPDS), two spermine synthases (HvSPMSs), five copper amine oxidases (HvCuAO) and seven polyamine oxidases (HvPAOs) members of PMGs were identified and characterized in barley. All the genes except for HvCuAO3 were found distributed on all chromosomes of barley. The phylogenetic and comparative assessment revealed that PA metabolic pathway is highly conserved in plants and the prediction of nine H. vulgare miRNAs (hvu-miR) target sites, 18 protein-protein interactions and 961 putative CREs in the promoter region were discerned. Gene expression of HvSAMDC3, HvCuAO7, HvPAO4 and HvSPMS1 were apparent at every developmental stage. SPDS/SPMS gene family was found to be the most responsive to induced leaf senescence. This study provides a reference for the functional investigation of the molecular mechanism(s) that regulate polyamine in plants as a tool for future breeding decision management systems.

Presently, agriculture worldwide is facing the major challenge of feeding the increasing population sustainably. The conventional practices have not only failed to meet the projected needs, but also led to tremendous environmental consequences. Hence, to ensure a food-secure and environmentally sound future, the major thrust is on sustainable alternatives. Due to challenges associated with conventional means of application of biocontrol agents in the management of biotic stresses in agroecosystems, significant transformations in this context are needed. The crucial role played by soil microbiome in efficiently and sustainably managing the agricultural production has unfolded a newer approach of rhizosphere engineering that shows immense promise in mitigating biotic stresses in an eco-friendly manner. The strategy of generating synthetic microbial communities (SynComs), by integrating omics approaches with traditional techniques of enumeration and in-depth analysis of plant–microbe interactions, is encouraging. The review discusses the significance of the rhizospheric microbiome in plant's fitness, and its manipulation for enhancing plant attributes. The focus of the review is to critically analyse the potential tools for the design and utilization of SynComs as a sustainable approach for rhizosphere engineering to ameliorate biotic stresses in plants. Furthermore, based on the synthesis of reports in the area, we have put forth possible solutions to some of the critical issues that impair the large-scale application of SynComs in agriculture.

Metaproteomics is a powerful tool for the characterization of metabolism, physiology, and functional interactions in microbial communities, including plant-associated microbiota. However, the metaproteomic methods that have been used to study plant-associated microbiota are very laborious and require large amounts of plant tissue, hindering wider application of these methods. We optimized and evaluated different protein extraction methods for metaproteomics of plant-associated microbiota in two different plant species ( Arabidopsis and maize). Our main goal was to identify a method that would work with low amounts of input material (40 to 70 mg) and that would maximize the number of identified microbial proteins. We tested eight protocols, each comprising a different combination of physical lysis method, extraction buffer, and cell-enrichment method on roots from plants grown with synthetic microbial communities. We assessed the performance of the extraction protocols by liquid chromatography-tandem mass spectrometry–based metaproteomics and found that the optimal extraction method differed between the two species. For Arabidopsis roots, protein extraction by beating whole roots with small beads provided the greatest number of identified microbial proteins and improved the identification of proteins from gram-positive bacteria. For maize, vortexing root pieces in the presence of large glass beads yielded the greatest number of microbial proteins identified. Based on these data, we recommend the use of these two methods for metaproteomics with Arabidopsis and maize. Furthermore, detailed descriptions of the eight tested protocols will enable future optimization of protein extraction for metaproteomics in other dicot and monocot plants. [Formula: see text] Copyright © 2022 The Author(s). This is an open access article distributed under the CC BY 4.0 International license .