Sara, Turcinov, Erik, Af Klint, Bertrand, Van Schoubroeck, Arlette, Kouwenhoven, Sohel, Mia, Karine, Chemin, Hans, Wils, Carl, Van Hove, An, De Bondt, Ken, Keustermans, Jeroen, Van Houdt, Joke, Reumers, Nathan, Felix, Navin L, Rao, Pieter, Peeters, Frederik, Stevenaert, Lars, Klareskog, Murray, McKinnon, Daniel, Baker, Anish, Suri, and Vivianne, Malmström
CD4+ T cells are implicated in rheumatoid arthritis (RA) pathology from the strong association between RA and certain HLA-class II gene variants. Here, we studied the synovial T cell receptor (TCR) repertoire, T cell phenotypes and T cell specificities in small joints of RA patients at time of diagnosis before therapeutic intervention.Sixteen patients (ACPA-positive n=11, ACPA-negative n=5) underwent synovial biopsy of a small (ultrasound guided, n=13) or large joint (arthroscopic, n=3), followed by direct single T cell sorting for paired sequencing of the αβ-TCR combined with flow cytometry analysis. TCRs from CD4+ T cell clones of four HLA-DRB1*04:01 patients were artificially re-expressed for studies of antigen specificity.T cell analysis demonstrated a CD4+ dominance and the presence of T peripheral helper-like cells in both patient groups. We identified4000 unique TCR-sequences, as well as 225 clonal expansions. Additionally, T cells with double alpha chains were a recurring feature. We identified a biased gene usage of the Vbeta-chain segment TRBV20-1 in CD4+ cells from ACPA-positive patients. In vitro stimulation of T cell lines expressing selected TCRs with an extensive panel of citrullinated and viral peptides identified several different virus-specific TCRs e.g. HCMV and HHV-2. Still, the majority of clones remained orphans, i.e. with unknown specificity.Minimally invasive biopsies of the RA synovium allow for single cell TCR-sequencing and phenotyping. Clonally expanded viral-reactive T cells account for part of the diverse CD4+ T cell repertoire. TRBV20-1 bias in ACPA-positive patients suggests recognition of common antigens. This article is protected by copyright. All rights reserved.