35 results on '"ShiJie Wen"'
Search Results
2. Investigation on the Stability of Janus SiO2-n Nanoparticle-Assisted Nonionic Surfactant-Stabilized Foam and Its Application in Enhanced Oil Recovery
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Daofan Wang, Han Jia, Qiuxia Wang, Xiaolong Wen, Ziwei Wei, Qiang Wang, Fangning Fan, Shijie Wen, Kaihe Lv, and Dexin Liu
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Fuel Technology ,General Chemical Engineering ,Energy Engineering and Power Technology - Published
- 2022
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3. KiCi
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Shuai Guo, Yang Gu, Shijie Wen, Yuan Ma, Yiqiang Chen, Jiwei Wang, and Chunyu Hu
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- 2022
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4. Traffic Anomaly Detection Via Conditional Normalizing Flow
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Zhuangwei Kang, Ayan Mukhopadhyay, Aniruddha Gokhale, Shijie Wen, and Abhishek Dubey
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- 2022
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5. Effects of Modification Degrees on the Colloidal Stability of Amphiphilic Janus Graphene Oxide in Aqueous Solution with and without Electrolytes
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Lingyu Zhang, Xin Wei, Yingbiao Xu, Kaihe Lv, Han Jia, Haidong Jia, Dexin Liu, Pan Huang, Shijie Wen, and Tingyi Wang
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Materials science ,Aqueous solution ,Graphene ,Oxide ,Surfaces and Interfaces ,Electrolyte ,Condensed Matter Physics ,law.invention ,Colloid ,chemistry.chemical_compound ,Chemical engineering ,chemistry ,law ,Ionic strength ,Amphiphile ,Electrochemistry ,General Materials Science ,Spectroscopy ,Nanosheet - Abstract
Colloidal stability of modified graphene oxide (GO) is fundamental for its practical applications. Meanwhile, most of the investigations mainly focused on the nanosheets modified by a certain amount of modifiers and neglected the effects of the modification degree, which could vary the physical and chemical properties of modified GO and significantly affect its stability in solution. To the best of our knowledge, this study initially investigated the impact of modification degrees on the colloidal stability of graphene-based amphiphilic Janus nanosheets (JGO) via both experimental and theoretical approaches. The prepared JGO, asymmetrically grafted by dodecylamine, exhibited a direct relation between the modification degree and nanosheet thickness, refractive index, electrostatic properties, hydrophobicity, and the ultimate colloidal stability. In addition, the ionic strength imposed distinctive influences on the aggregation behavior of JGO. Based on the comparison between experimental results and theoretical calculation, it was revealed that the JGO should be modeled as two-dimensional (2D) nanosheets in pure water and be treated as 3D spherical particles in electrolyte solutions for the prediction with the extended Derjaguin-Landau-Verwey-Overbeek theory.
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- 2021
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6. Phosphocreatine Promotes Osteoblastic Activities in H2O2-Induced MC3T3-E1 Cells by Regulating SIRT1/FOXO1/PGC-1α Signaling Pathway
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Changyuan Wang, Yue Jin, Jingjing Wu, Qi Liu, Qiang Meng, Zheng Jing, Mozhen Liu, Huijun Sun, and Shijie Wen
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biology ,Chemistry ,Sirtuin 1 ,Pharmaceutical Science ,FOXO1 ,medicine.disease_cause ,Cell biology ,RUNX2 ,Osteoprotegerin ,RANKL ,biology.protein ,medicine ,Alkaline phosphatase ,Signal transduction ,Oxidative stress ,Biotechnology - Abstract
Background: Osteoporosis, characterized by bone loss, usually occurs with the increased bone resorption and decreased bone formation. H2O2-induced MC3T3-E1 cells are commonly used for the study of osteoblastic activities, which play a crucial role in bone formation. Objective: This study aimed to investigate the effects of Phosphocreatine (PCr) on the osteoblastic activities in H2O2-induced MC3T3-E1 cells and elaborate on the possible molecular mechanism. Methods: The Osteoprotegerin (OPG)/Receptor Activator of NF-κB Ligand (RANKL) ratio and osteogenic markers were detected to investigate the effects of PCr on osteoblastic activities, and the osteoblastic apoptosis was detected using Hochest staining. Moreover, oxidative stress, Adenosine Triphosphate (ATP) generation and the expression of Sirtuin 1 (SIRT1), Forkhead Box O 1 (FOXO1) and Peroxisome Proliferator-Activated Receptor Γ Coactivator-1α (PGC-1α) were also examined to uncover the possible molecular mechanism in H2O2-induced MC3T3-E1 cells. Result: The results showed that PCr promoted the osteoblastic differentiation by increasing the expression levels of osteogenic markers of Alkaline Phosphatase (ALP) and Runt-related transcription factor 2 (Runx2), as well as increased the OPG/RANKL ratio and suppressed the osteoblastic apoptosis in H2O2-induced MC3T3-E1 cells. Moreover, treatment with PCr suppressed reactive oxygen species (ROS) over-generation and promoted the ATP production as well as increased the PGC-1α, FOXO1 and SIRT1 protein expression levels in H2O2-induced MC3T3-E1 cells. Conclusion: PCr treatment could promote osteoblastic activities via suppressing oxidative stress and increasing the ATP generation in H2O2-induced MC3T3-E1 cells. In addition, the positive effects of PCr on osteoblasts might be regulated by SIRT1/FOXO1/ PGC-1α signaling pathway.
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- 2021
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7. Thermo-Mechanical Analysis of the Sealing Performance of a Diesel-Engine Cylinder Gasket
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Changzhen Liu, Ren Wei, Wang Xulan, Wu Bo, Chen Xiaofei, Shude Ji, Shijie Wen, Hao Yonggang, and Chen Zezhong
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Materials science ,law ,Gasket ,General Materials Science ,Composite material ,Diesel engine ,Thermo mechanical ,Cylinder (engine) ,law.invention - Published
- 2021
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8. Design and Research of Channel Circuit Based on Broadband Power Line Carrier
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Siyu Chen, Hang Sun, Min Weng, Shijie Wen, Le Li, and Bingqing Liu
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History ,Computer Science Applications ,Education - Abstract
In order to effectively improve the anti-attenuation, anti-noise and anti-impedance change capabilities of the low-voltage narrowband power line carrier communication unit, reduce the carrier signal coupling attenuation, and highly fidelity signal power encoded and modulated by the carrier chip, an improved high-speed power line carrier communication transceiver circuit is designed. Using 303.13kHz~357.81kHz as sub-carrier signal frequency can effectively avoid the random noise generated by high-power power electronic equipment and household appliances below 35kHz. At the same time, to prevent the frequency crosstalk of power line carrier products with 270kHz and 421kHz as the center frequency, the Y-coupling capacitor and sixth order Butterworth band-pass filter circuit are used to design the signal receiving and transmitting circuit of the communication unit to isolate unwanted signals. The experimental simulation of the designed circuit is carried out on the circuit simulation software Multisim 12. The results show that the designed power line carrier communication transceiver circuit can effectively control the signal coupling attenuation within 4dB, and the filtering of unwanted signals can also reach 41.7dB, which has good application value.
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- 2023
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9. Piperacillin enhances the inhibitory effect of tazobactam on β-lactamase through inhibition of organic anion transporter 1/3 in rats
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Xiaodong Ma, Changyuan Wang, Kexin Liu, Huijun Sun, Zhihao Liu, Xiaokui Huo, Shilei Yang, Zhonggui He, Shijie Wen, Jinyong Peng, and Qiang Meng
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Tazobactam ,Organic anion transporter 1 ,Pharmaceutical Science ,02 engineering and technology ,Pharmacology ,010402 general chemistry ,01 natural sciences ,Pharmacokinetics ,polycyclic compounds ,medicine ,Inhibitory effect ,Piperacillin ,biology ,Chemistry ,organic chemicals ,lcsh:RM1-950 ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,021001 nanoscience & nanotechnology ,medicine.disease ,0104 chemical sciences ,lcsh:Therapeutics. Pharmacology ,Renal physiology ,Bacteremia ,biology.protein ,bacteria ,0210 nano-technology ,Organic anion transporter ,Research Article ,Drug-drug interaction ,medicine.drug ,Clearance - Abstract
To assess the mechanism of the pharmacokinetic interaction between piperacillin and tazobactam, renal excretion and pharmacokinetic studies of piperacillin/tazobactam were investigated in normal and bacteremia rats. A bacteremia model was established to investigate the pharmacokinetic properties of piperacillin and tazobactam under different conditions. Renal slices were taken to examine the uptake of piperacillin and tazobactam. Pharmacokinetic studies of β-lactamase in rats were performed to study the contribution of rOat1/3 to the inhibition of tazobactam on β-lactamase. The AUC (from 2.93 ± 0.58 to 6.52 ± 1.44 mg·min/ml) and the plasma clearance (CLP) (from 2.41 ± 1.20 to 0.961 ± 0.212 ml/min/kg) of tazobactam were both altered after the intravenous coadministration of piperacillin and tazobactam in the bacteremia rats. The renal clearance (CLR) of tazobactam decreased from 1.30 ± 0.50 to 0.361 ± 0.043 ml/min/kg. In summary, there was a beneficial interaction between piperacillin and tazobactam mediated by rOat1 and rOat3. Piperacillin enhances the inhibitory effect of tazobactam on β-lactamase through the inhibition of rOat1 and rOat3 in rats. The contribution rate of rOat1/3 for the synergistic effect was 20% when the two drugs were coadministered., Graphical abstract Image, graphical abstract
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- 2019
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10. Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement
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Shaoxiong Li, Xuanqiang Liang, Zhong-Jian Liu, Xingyu Li, Fanbo Meng, Andrew H. Paterson, Haofa Lan, Rajeev K. Varshney, Zhikang Zhang, Kadambot H. M. Siddique, Yanbin Hong, Jinpeng Wang, Shanlin Yu, Guo-Qiang Zhang, Shijie Wen, Manish K. Pandey, Jiaqing Yuan, Xiaoping Chen, Haifen Li, Qing Lu, Jigao Yu, Xiyin Wang, Guiyuan Zhou, Jianan Zhang, Hao Liu, and Haiyan Liu
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0106 biological sciences ,0301 basic medicine ,Genome evolution ,Arachis ,Plant Science ,01 natural sciences ,Genome ,Arachis duranensis ,03 medical and health sciences ,Arachis ipaensis ,Lipid biosynthesis ,Molecular Biology ,Phylogeny ,Comparative genomics ,Genetics ,Whole Genome Sequencing ,biology ,Hypogaea ,food and beverages ,Sequence Analysis, DNA ,Lipid Metabolism ,biology.organism_classification ,Arachis hypogaea ,030104 developmental biology ,Peanut Oil ,Transcriptome ,Genome, Plant ,010606 plant biology & botany - Abstract
Cultivated peanut (Arachis hypogaea) is an allotetraploid crop planted in Asia, Africa, and America for edible oil and protein. To explore the origins and consequences of tetraploidy, we sequenced the allotetraploid A. hypogaea genome and compared it with the related diploid Arachis duranensis and Arachis ipaensis genomes. We annotated 39 888 A-subgenome genes and 41 526 B-subgenome genes in allotetraploid peanut. The A. hypogaea subgenomes have evolved asymmetrically, with the B subgenome resembling the ancestral state and the A subgenome undergoing more gene disruption, loss, conversion, and transposable element proliferation, and having reduced gene expression during seed development despite lacking genome-wide expression dominance. Genomic and transcriptomic analyses identified more than 2 500 oil metabolism-related genes and revealed that most of them show altered expression early in seed development while their expression ceases during desiccation, presenting a comprehensive map of peanut lipid biosynthesis. The availability of these genomic resources will facilitate a better understanding of the complex genome architecture, agronomically and economically important genes, and genetic improvement of peanut.
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- 2019
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11. CD38 activation by monosodium urate crystals contributes to inflammatory responses in human and murine macrophages
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Ikumi Tamai, Hiroshi Arakawa, and Shijie Wen
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Male ,Gout ,THP-1 Cells ,Interleukin-1beta ,Primary Cell Culture ,Biophysics ,Inflammation ,Hyperuricemia ,CD38 ,Nicotinamide adenine dinucleotide ,Biochemistry ,Models, Biological ,chemistry.chemical_compound ,Mice ,medicine ,Animals ,Humans ,Molecular Biology ,chemistry.chemical_classification ,Membrane Glycoproteins ,Cluster of differentiation ,Macrophages ,hemic and immune systems ,Cell Biology ,medicine.disease ,NAD ,ADP-ribosyl Cyclase 1 ,Cell biology ,Uric Acid ,Mice, Inbred C57BL ,Enzyme ,chemistry ,Gene Expression Regulation ,Female ,NAD+ kinase ,medicine.symptom ,Crystallization ,Intracellular ,Signal Transduction - Abstract
Cluster of differentiation (CD) 38, a major enzyme for nicotinamide adenine dinucleotide (NAD+) degradation, plays a key role in inflammation. Meanwhile, intracellular NAD+ decline is also associated with inflammatory responses. However, whether CD38 activation is involved in gouty inflammation has not been elucidated. The present study aimed to clarify the role of CD38 in monosodium urate crystals (MSU)-triggered inflammatory responses. The results showed that MSU crystals increased the protein expression of CD38 in time- and concentration-dependent manner in THP-1 macrophages and mouse bone marrow-derived macrophages (BMDMs). Moreover, intracellular NAD+ levels were reduced by MSU crystals along with the increased IL-1β release. However, CD38 inhibition by 78c elevated intracellular NAD+ levels and suppressed IL-1β release in MSU crystals-treated THP-1 macrophages and BMDMs. Interestingly, CD38 inhibition without significant elevation of intracellular NAD+ also decreased IL-1β release driven by MSU crystals in THP-1 macrophages. In conclusion, the present study revealed that MSU crystals could activate CD38 with the ensuing intracellular NAD+ decline to promote inflammatory responses in THP-1 macrophages and BMDMs, while CD38 inhibition could suppress MSU crystals-triggered inflammatory responses, indicating that CD38 is a potential therapeutic target for gout.
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- 2021
12. The synthesis of novel amphiphilic GOJS-Cn nanoparticles and their further application in stabilizing pickering emulsion and enhancing oil recovery
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Han Jia, Daofan Wang, Qiuxia Wang, Jiajun Dai, Qiang Wang, Shijie Wen, Zhe Wang, Bowen Wang, Xincan Jiang, Xu Li, and Kaihe Lv
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Fuel Technology ,Geotechnical Engineering and Engineering Geology - Published
- 2022
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13. Phosphocreatine Promotes Osteoblastic Activities in H
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Zheng, Jing, Changyuan, Wang, Shijie, Wen, Yue, Jin, Qiang, Meng, Qi, Liu, Jingjing, Wu, Huijun, Sun, and Mozhen, Liu
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Osteoblasts ,Phosphocreatine ,Forkhead Box Protein O1 ,RANK Ligand ,Osteoprotegerin ,Apoptosis ,Core Binding Factor Alpha 1 Subunit ,3T3 Cells ,Hydrogen Peroxide ,Alkaline Phosphatase ,Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha ,Mice ,Oxidative Stress ,Sirtuin 1 ,Osteogenesis ,Animals ,Reactive Oxygen Species ,Signal Transduction - Abstract
Osteoporosis, characterized by bone loss, usually occurs with the increased bone resorption and decreased bone formation. HThis study aimed to investigate the effects of Phosphocreatine (PCr) on the osteoblastic activities in HThe Osteoprotegerin (OPG)/Receptor Activator of NF-κB Ligand (RANKL) ratio and osteogenic markers were detected to investigate the effects of PCr on osteoblastic activities, and the osteoblastic apoptosis was detected using Hochest staining. Moreover, oxidative stress, Adenosine Triphosphate (ATP) generation and the expression of Sirtuin 1 (SIRT1), Forkhead Box O 1 (FOXO1) and Peroxisome Proliferator-Activated Receptor Γ Coactivator-1α (PGC-1α) were also examined to uncover the possible molecular mechanism in HThe results showed that PCr promoted the osteoblastic differentiation by increasing the expression levels of osteogenic markers of Alkaline Phosphatase (ALP) and Runt-related transcription factor 2 (Runx2), as well as increased the OPG/RANKL ratio and suppressed the osteoblastic apoptosis in HPCr treatment could promote osteoblastic activities via suppressing oxidative stress and increasing the ATP generation in H
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- 2020
14. TALEN-mediated targeted mutagenesis of fatty acid desaturase 2 (FAD2) in peanut (Arachis hypogaea L.) promotes the accumulation of oleic acid
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Xuanqiang Liang, Qing Lu, Haifen Li, Xingyu Li, Hao Liu, Yanbin Hong, Shijie Wen, and Xiaoping Chen
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Fatty Acid Desaturases ,0301 basic medicine ,food.ingredient ,Arachis ,Mutant ,Plant Science ,Biology ,Plant Roots ,Genome engineering ,03 medical and health sciences ,chemistry.chemical_compound ,food ,Genome editing ,Transcription Activator-Like Effector Nucleases ,Genetics ,Transcription activator-like effector nuclease ,food and beverages ,General Medicine ,Oleic acid ,030104 developmental biology ,Fatty acid desaturase ,Biochemistry ,chemistry ,Mutagenesis ,Seeds ,biology.protein ,Peanut oil ,Agronomy and Crop Science ,DNA ,Oleic Acid ,Protein Binding - Abstract
A first creation of high oleic acid peanut varieties by using transcription activator-like effecter nucleases (TALENs) mediated targeted mutagenesis of Fatty Acid Desaturase 2 (FAD2). Transcription activator like effector nucleases (TALENs), which allow the precise editing of DNA, have already been developed and applied for genome engineering in diverse organisms. However, they are scarcely used in higher plant study and crop improvement, especially in allopolyploid plants. In the present study, we aimed to create targeted mutagenesis by TALENs in peanut. Targeted mutations in the conserved coding sequence of Arachis hypogaea fatty acid desaturase 2 (AhFAD2) were created by TALENs. Genetic stability of AhFAD2 mutations was identified by DNA sequencing in up to 9.52 and 4.11% of the regeneration plants at two different targeted sites, respectively. Mutation frequencies among AhFAD2 mutant lines were significantly correlated to oleic acid accumulation. Genetically, stable individuals of positive mutant lines displayed a 0.5-2 fold increase in the oleic acid content compared with non-transgenic controls. This finding suggested that TALEN-mediated targeted mutagenesis could increase the oleic acid content in edible peanut oil. Furthermore, this was the first report on peanut genome editing event, and the obtained high oleic mutants could serve for peanut breeding project.
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- 2018
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15. Draft genome of the peanut A-genome progenitor ( Arachis duranensis ) provides insights into geocarpy, oil biosynthesis, and allergens
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Xiaoping Chen, Hongjie Li, Manish K. Pandey, Qingli Yang, Xiyin Wang, Vanika Garg, Haifen Li, Xiaoyuan Chi, Dadakhalandar Doddamani, Yanbin Hong, Hari Upadhyaya, Hui Guo, Aamir W. Khan, Fanghe Zhu, Xiaoyan Zhang, Lijuan Pan, Gary J. Pierce, Guiyuan Zhou, Katta A. V. S. Krishnamohan, Mingna Chen, Ni Zhong, Gaurav Agarwal, Shuanzhu Li, Annapurna Chitikineni, Guo-Qiang Zhang, Shivali Sharma, Na Chen, Haiyan Liu, Pasupuleti Janila, Shaoxiong Li, Min Wang, Tong Wang, Jie Sun, Xingyu Li, Chunyan Li, Mian Wang, Lina Yu, Shijie Wen, Sube Singh, Zhen Yang, Jinming Zhao, Chushu Zhang, Yue Yu, Jie Bi, Xiaojun Zhang, Zhong-Jian Liu, Andrew H. Paterson, Shuping Wang, Xuanqiang Liang, Rajeev K. Varshney, and Shanlin Yu
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0301 basic medicine ,Arachis ,Geocarpy ,Genome ,Arachis duranensis ,03 medical and health sciences ,Arachis ipaensis ,Botany ,Humans ,Plant Oils ,Gene family ,Gene ,Plant Proteins ,Multidisciplinary ,biology ,fungi ,food and beverages ,Biological Sciences ,biology.organism_classification ,Arachis hypogaea ,Tetraploidy ,030104 developmental biology ,Multigene Family ,Peanut Oil ,Genome, Plant - Abstract
Peanut or groundnut (Arachis hypogaea L.), a legume of South American origin, has high seed oil content (45–56%) and is a staple crop in semiarid tropical and subtropical regions, partially because of drought tolerance conferred by its geocarpic reproductive strategy. We present a draft genome of the peanut A-genome progenitor, Arachis duranensis, and 50,324 protein-coding gene models. Patterns of gene duplication suggest the peanut lineage has been affected by at least three polyploidizations since the origin of eudicots. Resequencing of synthetic Arachis tetraploids reveals extensive gene conversion in only three seed-to-seed generations since their formation by human hands, indicating that this process begins virtually immediately following polyploid formation. Expansion of some specific gene families suggests roles in the unusual subterranean fructification of Arachis. For example, the S1Fa-like transcription factor family has 126 Arachis members, in contrast to no more than five members in other examined plant species, and is more highly expressed in roots and etiolated seedlings than green leaves. The A. duranensis genome provides a major source of candidate genes for fructification, oil biosynthesis, and allergens, expanding knowledge of understudied areas of plant biology and human health impacts of plants, informing peanut genetic improvement and aiding deeper sequencing of Arachis diversity.
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- 2016
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16. MOESM2 of Genome-wide identification of microsatellite markers from cultivated peanut (Arachis hypogaea L.)
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Lu, Qing, Yanbin Hong, Shaoxiong Li, Liu, Hao, Haifen Li, Jianan Zhang, Haofa Lan, Haiyan Liu, Xingyu Li, Shijie Wen, Guiyuan Zhou, Varshney, Rajeev, Huifang Jiang, Xiaoping Chen, and Xuanqiang Liang
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food and beverages - Abstract
Additional file 2: Figure S1. Chromosome-wide distribution of SSRs in A. hypogaea cv. Fuhuasheng genome. Figure S2. Number of SSR repeat motifs. Figure S3. Abundance of the top 30 different types of SSR motifs. Figure S4. Number (A) and percentage (B) of different types of SSR markers. Figure S5. Summary of SSR types of the developed SSR markers. Figure S6. Product size of 188 SSR markers tested by PCR amplification. Figure S7. Number of loci in the public SSR markers as determined by e-PCR remapping. Figure S8. Comparison of known QTLs in genetic and physical maps.
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- 2019
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17. Transcriptome-wide sequencing provides insights into geocarpy in peanut (Arachis hypogaeaL.)
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Rajeev K. Varshney, Hong Wu, Shijie Wen, Ni Zhong, Xiaoyuan Chi, Xuanqiang Liang, Chen Na, Xiaoping Chen, Lijuan Pan, Heying Li, Guiyuan Zhou, Haiyan Liu, Xingyu Li, Wang Tong, Fanghe Zhu, Yanbin Hong, Shanlin Yu, Haifen Li, Yang Zhen, Mingna Chen, Wei Zhu, Shaoxiong Li, Hong Liu, Erhua Zhang, Wang Mian, and Qingli Yang
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0301 basic medicine ,Geocarpy ,Arachis ,Gravitropism ,RNA-Seq ,Plant Science ,Biology ,Transcriptome ,03 medical and health sciences ,Gene Expression Regulation, Plant ,Botany ,Transcriptional regulation ,Gynophore ,Plant Proteins ,Sequence Analysis, RNA ,food and beverages ,Gene Ontology ,030104 developmental biology ,Point of delivery ,Evolutionary biology ,Fruit ,Seeds ,Photomorphogenesis ,Agronomy and Crop Science ,Biotechnology - Abstract
A characteristic feature of peanut is the subterranean fructification, geocarpy, in which the gynophore ('peg'), a specialized organ that transitions from upward growth habit to downward outgrowth upon fertilization, drives the developing pod into the soil for subsequent development underground. As a step towards understanding this phenomenon, we explore the developmental dynamics of the peanut pod transcriptome at 11 successive stages. We identified 110 217 transcripts across developmental stages and quantified their abundance along a pod developmental gradient in pod wall. We found that the majority of transcripts were differentially expressed along the developmental gradient as well as identified temporal programs of gene expression, including hundreds of transcription factors. Thought to be an adaptation to particularly harsh subterranean environments, both up- and down-regulated gene sets in pod wall were enriched for response to a broad array of stimuli, like gravity, light and subterranean environmental factors. We also identified hundreds of transcripts associated with gravitropism and photomorphogenesis, which may be involved in the geocarpy. Collectively, this study forms a transcriptional baseline for geocarpy in peanut as well as provides a considerable body of evidence that transcriptional regulation in peanut aerial and subterranean fruits is complex.
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- 2015
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18. Genome Sequencing and Analysis of the Peanut B-Genome Progenitor (
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Haifen Li, Rajeev K. Varshney, Xiaoping Chen, Qing Lu, Xingyu Li, Yanbin Hong, Haiyan Liu, Shaoxiong Li, Hao Liu, Guo-Qiang Zhang, Shijie Wen, Guiyuan Zhou, Xuanqiang Liang, and Zhong-Jian Liu
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0106 biological sciences ,0301 basic medicine ,Arachis ,Genome evolution ,genome sequence ,Plant Science ,lcsh:Plant culture ,genome evolution ,01 natural sciences ,Genome ,Arachis duranensis ,03 medical and health sciences ,Arachis ipaensis ,lcsh:SB1-1110 ,Gene ,Original Research ,Genetics ,Whole genome sequencing ,biology ,food and beverages ,biology.organism_classification ,Arachis hypogaea ,030104 developmental biology ,polyploidizations ,whole genome duplication ,010606 plant biology & botany - Abstract
Peanut (Arachis hypogaea L.), an important leguminous crop, is widely cultivated in tropical and subtropical regions. Peanut is an allotetraploid, having A and B subgenomes that maybe have originated in its diploid progenitors Arachis duranensis (A-genome) and Arachis ipaensis (B-genome), respectively. We previously sequenced the former and here present the draft genome of the latter, expanding our knowledge of the unique biology of Arachis. The assembled genome of A. ipaensis is ~1.39 Gb with 39,704 predicted protein-encoding genes. A gene family analysis revealed that the FAR1 family may be involved in regulating peanut special fruit development. Genomic evolutionary analyses estimated that the two progenitors diverged ~3.3 million years ago and suggested that A. ipaensis experienced a whole-genome duplication event after the divergence of Glycine max. We identified a set of disease resistance-related genes and candidate genes for biological nitrogen fixation. In particular, two and four homologous genes that may be involved in the regulation of nodule development were obtained from A. ipaensis and A. duranensis, respectively. We outline a comprehensive network involved in drought adaptation. Additionally, we analyzed the metabolic pathways involved in oil biosynthesis and found genes related to fatty acid and triacylglycerol synthesis. Importantly, three new FAD2 homologous genes were identified from A. ipaensis and one was completely homologous at the amino acid level with FAD2 from A. hypogaea. The availability of the A. ipaensis and A. duranensis genomic assemblies will advance our knowledge of the peanut genome.
- Published
- 2018
19. Additional file 4: of Consensus map integration and QTL meta-analysis narrowed a locus for yield traits to 0.7â cM and refined a region for late leaf spot resistance traits to 0.38â cM on linkage group A05 in peanut (Arachis hypogaea L.)
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Lu, Qing, Liu, Hao, Yanbin Hong, Haifen Li, Haiyan Liu, Xingyu Li, Shijie Wen, Guiyuan Zhou, Shaoxiong Li, Xiaoping Chen, and Xuanqiang Liang
- Abstract
Figure S2. Distribution of different loci on each linkage group of the integrated consensus map. (DOCX 422â kb)
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- 2018
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20. Additional file 8: of Consensus map integration and QTL meta-analysis narrowed a locus for yield traits to 0.7â cM and refined a region for late leaf spot resistance traits to 0.38â cM on linkage group A05 in peanut (Arachis hypogaea L.)
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Lu, Qing, Liu, Hao, Yanbin Hong, Haifen Li, Haiyan Liu, Xingyu Li, Shijie Wen, Guiyuan Zhou, Shaoxiong Li, Xiaoping Chen, and Xuanqiang Liang
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Figure S3. Enrichment analysis of gene ontology terms for the candidate genes for yield and late leaf spot. (DOCX 174â kb)
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- 2018
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21. Additional file 2: of Consensus map integration and QTL meta-analysis narrowed a locus for yield traits to 0.7â cM and refined a region for late leaf spot resistance traits to 0.38â cM on linkage group A05 in peanut (Arachis hypogaea L.)
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Lu, Qing, Liu, Hao, Yanbin Hong, Haifen Li, Haiyan Liu, Xingyu Li, Shijie Wen, Guiyuan Zhou, Shaoxiong Li, Xiaoping Chen, and Xuanqiang Liang
- Abstract
Figure S1. Distribution of all the initial QTLs on the linkage groups of the integrated consensus map. (DOCX 671â kb)
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- 2018
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22. Electronic properties of tin dichalcogenide monolayers and effects of hydrogenation and tension
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Shijie Wen, Hui Pan, and Yuebing Zheng
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Materials science ,Band gap ,Intrinsic semiconductor ,business.industry ,chemistry.chemical_element ,Nanotechnology ,General Chemistry ,Conductivity ,Transition metal dichalcogenide monolayers ,Metal ,Semiconductor ,chemistry ,Chemical physics ,visual_art ,Monolayer ,Materials Chemistry ,visual_art.visual_art_medium ,Tin ,business - Abstract
Transition metal dichalcogenide monolayers have attracted extensive attention because of their rich physical and chemical properties and wide applications. In this work, we systematically investigate the electronic properties of tin dichalcogenide monolayers (SnX2, X = S, Se, and Te) and the effects of hydrogenation and tension by first-principles calculations based on the density-functional theory. We find that a pure SnX2 monolayer can be an intrinsic semiconductor or metal depending on the Sn–X bonding state. Hydrogenation can transfer its conductivity from a narrow-band semiconductor or a metal to wide-band semiconductor. We further show that a monolayer with a tunable band gap and even metallic characteristics can be achieved by applying tension. We predict that these tin-based dichalcogenide monolayers with controllable multi-functions may be employed in nanodevices and sensors.
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- 2015
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23. OAT1 and OAT3 also mediate the drug-drug interaction between piperacillin and tazobactam
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Qiang Meng, Xiaodong Ma, Yanna Zhu, Zhihao Liu, Huijun Sun, Kexin Liu, Changyuan Wang, Shilei Yang, Yingjie Duan, Siyun Yang, Shijie Wen, and Xiaokui Huo
- Subjects
0301 basic medicine ,Male ,Tazobactam ,Organic anion transporter 1 ,Pharmaceutical Science ,Penicillanic Acid ,Pharmacology ,Organic Anion Transporters, Sodium-Independent ,Kidney ,030226 pharmacology & pharmacy ,Benzylpenicillin ,Cell Line ,03 medical and health sciences ,0302 clinical medicine ,Organic Anion Transport Protein 1 ,polycyclic compounds ,medicine ,Animals ,Humans ,Drug Interactions ,Rats, Wistar ,Piperacillin ,biology ,Chemistry ,Probenecid ,organic chemicals ,Penicillin G ,Sulbactam ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,Rats ,030104 developmental biology ,medicine.anatomical_structure ,HEK293 Cells ,Piperacillin/tazobactam ,biology.protein ,bacteria ,p-Aminohippuric Acid ,medicine.drug - Abstract
This study aimed to demonstrate that organic anion transporters (OATs) mediate the drug-drug interaction (DDI) between piperacillin and tazobactam. After co-administration with piperacillin in rats, the AUC of tazobactam in plasma was significantly increased, and t1/2β was prolonged with significant reduction in plasma clearance, renal clearance and cumulative urinary excretion. In rat and human kidney slices, probenecid, p-aminohippurate and benzylpenicillin inhibited the uptake of piperacillin and tazobactam. Piperacillin significantly inhibited the uptake of tazobactam. Moreover, the uptakes of piperacillin, tazobactam and sulbactam in hOAT1/3-HEK293 cells were significantly higher compared with mock-HEK293 cells, respectively. Piperacillin significantly inhibited the uptake of tazobactam in hOAT1/3-HEK293 cells. The Km values of tazobactam (431 ± 67 μM for hOAT1, 377 ± 63 μM for hOAT3) were significantly higher than those of piperacillin (37 ± 5 μM for hOAT1, 172 ± 28 μM for hOAT3). This suggested that piperacillin has a stronger affinity to hOAT1/3 than tazobactam. Meanwhile, the Km values of tazobactam were increased in the presence of piperacillin with unchanged Vmax. This indicated that piperacillin inhibited the uptake of tazobactam in a competitive manner. In conclusion, piperacillin and tazobactam are the substrates of hOAT1/3, and OAT1/3 mediate the DDI between piperacillin and tazobactam.
- Published
- 2017
24. Overexpression of ARAhPR10, a Member of the PR10 Family, Decreases Levels of Aspergillus flavus Infection in Peanut Seeds
- Author
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Chunzheng Xie, Haifen Li, Xiaoping Chen, Xuanqiang Liang, Haiyan Liu, Shijie Wen, and Yanbin Hong
- Subjects
Aflatoxin ,Agrobacterium ,Transgene ,Wild type ,food and beverages ,Aspergillus flavus ,General Medicine ,Biology ,biology.organism_classification ,Microbiology ,Arachis hypogaea ,Genotype ,Botany ,heterocyclic compounds ,Gene - Abstract
Peanut (Arachis hypogaea L.) is one of the most susceptible host crops to Aspergillus flavus invasion and subsequent aflatoxin contamination. In this report, a new member of PR10 family putative resistant gene (designated as ARAhPR10, No. EU661964.1) encoding a PR10 protein was isolated and characterized. Analysis of qRT-PCR showed that the expression of ARAhPR10 was induced by pre-harvested A. flavus infection, but no significant difference was observed between resistant genotype “GT-C20” and susceptible genotype “Yueyou 7”. Seven transgenic peanut lines expressing the ARAhPR10 gene under the control of 35S promoter were obtained using the Agrobacterium tumefaciens-mediated method. Real time RT-PCR results showed that the expression level of the ARAhPR10 was significantly higher and the A. flavus infection and aflatoxin content were significantly lower in seeds of transgenic lines than that of the wild type. A significant negative correlation between ARAhPR10 expression at transcript level and seeds aflatoxin production was observed. Combining the previous results, it is suggested that ARAhPR10 expression play an important role in peanut host resistance to A. flavus infection and aflatoxin producing.
- Published
- 2013
- Full Text
- View/download PDF
25. Analysis of Gene Expression Profiles in Pod and Leaf of Two Major Peanut Cultivars in Southern China
- Author
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Xuanqiang Liang, Erhua Zhang, Ni Zhong, Shao-Xiong Li, Fanghe Zhu, Yanbin Hong, Xing-Yu Li, Shijie Wen, Xiaoping Chen, Guiyuan Zhou, and Haiyan Liu
- Subjects
Point of delivery ,Agronomy ,Southern china ,Gene expression ,Plant Science ,Cultivar ,Biology ,Agronomy and Crop Science ,Biotechnology - Published
- 2011
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26. Construction of Genetic Linkage Map Based on SSR Markers in Peanut (Arachis hypogaea L.)
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Yanbin Hong, Xiaoping Chen, Shijie Wen, Shao-Xiong Li, Haiyan Liu, Xuanqiang Liang, and Guiyuan Zhou
- Subjects
Genetics ,education.field_of_study ,Population ,food and beverages ,Genetic linkage map ,Plant Science ,Quantitative trait locus ,Biology ,Homology (biology) ,Arachis hypogaea ,Inbred strain ,GenBank ,education ,Agronomy and Crop Science ,Gene - Abstract
Molecular genetic maps of crop species can be used in a variety of ways in breeding and genomic research such as identification and mapping of genes and quantitative trait loci (QTLs) for morphological, physiological and economic traits of crop species. However, a comprehensive genetic linkage map for cultivated peanut has not yet been developed due to the extremely low frequency of DNA polymorphism in cultivated peanut. In this study, 142 recombinant inbred lines (RILs) derived from a cross between Yueyou 13 and Zhenzhuhei were used as mapping population in peanut (Arachis hypogaea L.). A total 652 pairs of genomic-SSR primer and 392 pairs of EST-SSR primer were used to detect the polymorphisms between the two parents. 141 SSR primer pairs, 127 genomic-SSR and 14 EST-SSR ones, which can be used to detect polymorphisms between the two parents, were selected to analyze the RILs population. Thus, a linkage genetic map which consists of 131 SSR loci in 20 linkage groups, with a coverage of 679 cM and an average of 6.12 cM of inter-maker distance was constructed. The putative functions of 12 EST-SSR markers located on the map were analyzed. Eleven showed homology to gene sequences deposited in GenBank. This is the first report of construction of a comprehensive genetic map with SSR markers in peanut (Arachis hypogaea L.). The map presented here will provide a genetic framework for mapping the qualitative and quantitative trait in peanut.
- Published
- 2008
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27. The relationship between root traits and aboveground traits in peanut (Arachis hypogaea L.)
- Author
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Yanbin Hong, Haiyan Liu, Shijie Wen, Xuanqiang Liang, Xiaoping Chen, Guiyuan Zhou, and Shaoxiong Li
- Subjects
Biomass (ecology) ,Mature stage ,Agronomy ,Close relationship ,Shoot ,food and beverages ,Root system ,Biology ,Significant negative correlation ,General Agricultural and Biological Sciences ,Aboveground biomass ,Arachis hypogaea - Abstract
Data of 12 peanut varieties were analyzed with a view to investigate the relationship between root traits and aboveground traits. Results showed that root biomass was positively correlated with aboveground biomass and total biomass at three stages of growth and development. Root activity at different growth stages were significantly and positively correlated with yield at the mature stage. However, a significant negative correlation was observed between yield and root/shoot ratio at the mature stage. It was concluded that the root system possessed a close relationship with aboveground parts, and keeping the root activity of peanut at the mature stage was essential for achieving high and stable yield.
- Published
- 2012
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28. Influence of Thermal Treatment Under Various Oxygen Pressures on The Electronic Properties of Ceramics and Single Crystals of Pure and Tin-Doped Indium Oxide
- Author
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G. Campet, Shijie Wen, and J. Portier
- Subjects
inorganic chemicals ,digestive, oral, and skin physiology ,Doping ,Oxide ,Mineralogy ,chemistry.chemical_element ,Thermal treatment ,equipment and supplies ,Oxygen ,Electronic, Optical and Magnetic Materials ,Indium tin oxide ,chemistry.chemical_compound ,Chemical engineering ,chemistry ,lcsh:Electrical engineering. Electronics. Nuclear engineering ,Electrical and Electronic Engineering ,Thin film ,Tin ,lcsh:TK1-9971 ,Indium - Abstract
The different electronic behaviors of pure and tin-doped indium oxides with various thermal treatments under high and low oxygen pressure are discussed on the basis of the evolution of the band energy diagram. A critical concentration of “active oxygen vacancies” associated with donor centers is necessary to achieve high electronic mobility in ITO (Indium Tin Oxide).
- Published
- 1992
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29. [Coded excitation circuit on medical ultrasonic endoscope imaging system]
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Daoyin, Yu, Jing, Bao, Xiaodong, Chen, and Shijie, Wen
- Subjects
Image Interpretation, Computer-Assisted ,Transducers ,Humans ,Equipment Design ,Endosonography - Abstract
In this paper, we introduce a coded excitation circuit for medical ultrasonic endoscope imaging system. This circuit is composed of TC6320 and its drive chip. The experiment demonstrates that this circuit can export frequency-adjustable, duration-controllable coded signals, and its voltage reaches +/-60 V. It still works well when excitant frequency reaches 30 MHz. Compared with the conventional medical ultrasonic pulse-echo imaging system, this coded excitation system has the potential of higher SNR and deeper penetration depth, especially for the small emission power system. This method has a bright future.
- Published
- 2009
30. [Digital scanning converter for medical endoscopic ultrasound imaging]
- Author
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Xiaodong, Chen, Hongxu, Zhang, Peifan, Zhou, Shijie, Wen, and Daoyin, Yu
- Subjects
Capsule Endoscopes ,Humans ,Signal Processing, Computer-Assisted ,Equipment Design ,Algorithms ,Analog-Digital Conversion ,Endoscopy, Gastrointestinal ,Ultrasonography - Abstract
This paper mainly introduces the design of digital scanning converter (DSC) for medical endoscopic ultrasound imaging. Fast modified vector totational CORDIC (FMVR-CORDIC) arithmetic complete coordinate conversion is used to increase the speed of ultrasonic scanning imaging. FPGA is used as the kernel module to control data transferring, related circuits and relevant chips' working, and to accomplish data preprocessing. With the advantages of simple structure, nice flexibility and convenience, it satisfies the demand for real-time displaying in this system. Finally, the original polar coordinate image is transformed to rectangular coordinate grey image through coordinate transformation. The system performances have been validated by the experimental result.
- Published
- 2009
31. Design of embedded endoscopic ultrasonic imaging system
- Author
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Ming Li, Daoyin Yu, Xiaodong Chen, Shijie Wen, and Hao Zhou
- Subjects
Engineering ,Signal processing ,business.industry ,Interface (computing) ,Windows CE ,Personal computer ,Electronic engineering ,Digital signal ,Ultrasonic sensor ,business ,Embedded operating system ,Computer hardware ,Digital signal processing - Abstract
Endoscopic ultrasonic imaging system is an important component in the endoscopic ultrasonography system (EUS). Through the ultrasonic probe, the characteristics of the fault histology features of digestive organs is detected by EUS, and then received by the reception circuit which making up of amplifying, gain compensation, filtering and A/D converter circuit, in the form of ultrasonic echo. Endoscopic ultrasonic imaging system is the back-end processing system of the EUS, with the function of receiving digital ultrasonic echo modulated by the digestive tract wall from the reception circuit, acquiring and showing the fault histology features in the form of image and characteristic data after digital signal processing, such as demodulation, etc. Traditional endoscopic ultrasonic imaging systems are mainly based on image acquisition and processing chips, which connecting to personal computer with USB2.0 circuit, with the faults of expensive, complicated structure, poor portability, and difficult to popularize. To against the shortcomings above, this paper presents the methods of digital signal acquisition and processing specially based on embedded technology with the core hardware structure of ARM and FPGA for substituting the traditional design with USB2.0 and personal computer. With built-in FIFO and dual-buffer, FPGA implement the ping-pong operation of data storage, simultaneously transferring the image data into ARM through the EBI bus by DMA function, which is controlled by ARM to carry out the purpose of high-speed transmission. The ARM system is being chosen to implement the responsibility of image display every time DMA transmission over and actualizing system control with the drivers and applications running on the embedded operating system Windows CE, which could provide a stable, safe and reliable running platform for the embedded device software. Profiting from the excellent graphical user interface (GUI) and good performance of Windows CE, we can not only clearly show 511×511 pixels ultrasonic echo images through application program, but also provide a simple and friendly operating interface with mouse and touch screen which is more convenient than the traditional endoscopic ultrasonic imaging system. Including core and peripheral circuits of FPGA and ARM, power network circuit and LCD display circuit, we designed the whole embedded system, achieving the desired purpose by implementing ultrasonic image display properly after the experimental verification, solving the problem of hugeness and complexity of the traditional endoscopic ultrasonic imaging system.
- Published
- 2008
- Full Text
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32. Increasing average power in medical ultrasonic endoscope imaging system by coded excitation
- Author
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Xiaodong Chen, Shijie Wen, Hao Zhou, and Daoyin Yu
- Subjects
Transducer ,Materials science ,Acoustics ,Ultrasonic sensor ,Barker code ,Transient (oscillation) ,Signal ,Energy (signal processing) ,Shock (mechanics) ,Voltage - Abstract
Medical ultrasonic endoscope is the combination of electronic endoscope and ultrasonic sensor technology. Ultrasonic endoscope sends the ultrasonic probe into coelom through biopsy channel of electronic endoscope and rotates it by a micro pre-motor, which requires that the length of ultrasonic probe is no more than 14mm and the diameter is no more than 2.2mm. As a result, the ultrasonic excitation power is very low and it is difficult to obtain a sharp image. In order to increase the energy and SNR of ultrasonic signal, we introduce coded excitation into the ultrasonic imaging system, which is widely used in radar system. Coded excitation uses a long coded pulse to drive u ltrasonic transducer, which can increase the average transmitting power accordingly. In this paper, in order to avoid the overlapping between adjacent echo, we used a four-figure Barker code to drive the ultrasonic transducer, which is modulated at the operating frequency of transducer to improve the emission ef ficiency. The implementation of coded excitation is closely associated with the transient operating characteristic of ultrasonic transducer. In this paper, the transient operating char acteristic of ultrasoni c transducer excited by a shock pulse /(t) is firstly analyzed, and then the exciting pulse generated by special ultrasonic transmitting circuit composing of MD1211 and TC6320. In the final part of the paper, we designed an experiment to validate the coded excitation with transduc er operating at 5MHz and a glass filled with ultrasonic coupling liquid as the object. Driven by a FPGA, the ultrasonic transmitting circuit output a four-figure Barker excitation pulse modulated at 5MHz, ±20 voltage and is consistent with the transient opera ting characteristic of ultrasonic transducer after matched by matching circuit. The reflected echo from glass possesses code d character, which is identical with the simulating result by Matlab. Furthermore, the signals amplitude is higher. Keywords: coded excitation; transducer; ultrasonic endoscope; ultrasonic signal; modulate; transient operating characteristic
- Published
- 2008
- Full Text
- View/download PDF
33. [RovoIving ultrasonic probe for medical endoscope imaging system based on USB2.0]
- Author
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Xiaodong, Chen, Shijie, Wen, and Daoyin, Yu
- Subjects
Capsule Endoscopes ,Image Processing, Computer-Assisted ,Humans ,Equipment Design ,Endoscopy, Gastrointestinal ,Ultrasonography - Abstract
This paper mainly introduces the design and implementation of rotary scanning imaging for Endoscopic Ultrasonography System based on USB2.0. The ultrasonic pulse-echo imaging technique has been used. In the paper, we simply introduce the emission circuit, receiving circuit and isolation circuit. According to the character of rotary scanning, we design the synchronous control circuit based on FPGA and data transmission circuit based on USB2.0. Finally the original polar coordinate image is transformed to rectangular coordinate grey image through coordinate transformation. The system performances have been validated by the experimental result gotten by scanning a specific object with continuous rotary motor.
- Published
- 2008
34. Ultrasonic transmitter for coded excitation in medical endoscope imaging system
- Author
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Daoyin Yu, Shijie Wen, Jing Bao, and Xiaodong Chen
- Subjects
Signal processing ,Engineering ,Transducer ,Signal-to-noise ratio ,business.industry ,Image quality ,Acoustics ,Echo (computing) ,Transmitter ,Medical imaging ,Electronic engineering ,Ultrasonic sensor ,business - Abstract
In this paper, we introduced an ultrasonic transmitter for coded excitation used in medical ultrasonic endoscope, which is mainly composed of MD1211 and TC6320. Since the ultrasonic endoscope uses a miniature ultrasonic probe whose length is no more than 14mm, and the diameter is no more than 2.2mm, the ultrasonic excitation power is very low, which makes it difficult to obtain a sharp image. So it is very important to use coded excitation to enhance image quality, which can improve the SNR of the echo without degrading the axial resolution. The transmitter accepts coded signals from FPGA and transforms them to ±60V driving signals which are sent to transducer, making it easy to implement coded excitation in ultrasonic endoscope.
- Published
- 2007
- Full Text
- View/download PDF
35. MEMS ultrasonic probe rotary scanning imaging system for medical endoscope
- Author
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Xiaodong Chen, Shijie Wen, and Daoyin Yu
- Subjects
Microelectromechanical systems ,Engineering ,Transducer ,Endoscope ,Geographic coordinate conversion ,business.industry ,Acoustics ,Echo (computing) ,Demodulation ,Ultrasonic sensor ,Fault (power engineering) ,business ,Biomedical engineering - Abstract
Medical ultrasonic endoscope is the combination of electronic endoscope and ultrasonic sensor technology. Ultrasonic endoscope sends the ultrasonic probe into coelom through the biopsy channel of an electronic endoscope and rotates it by a micro motor, acquiring fault histology features of digestive organs. Compared with external ultrasonic detection, the system reduces the distance between the transducer and the organ, diminishing the effects on imaging of fats and body cavity gas. On the basis of ultrasonic imaging system, this paper implements a pulse echo imaging system. We describe the ultrasonic probe, emission circuit, receiving circuit and protective circuit in detail. With the demodulation circuit, we get the amplitude of echo which indicates the objects. And to achieve the rotary scan, we design a synchronous control circuit and a data transfer circuit basing on the USB2.0 interface. Finally we get a grey image with 256 grey levels after coordinate conversion.
- Published
- 2006
- Full Text
- View/download PDF
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