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Despite accumulating evidence that protein dynamics is indispensable for understanding the structural basis of biological activities, it remains challenging to visualize the spatial description of the dynamics and to associate transient conformations with their molecular functions. We have developed a new NMR protein structure determination method for the inference of multi-state conformations using multiple types of NMR data, including paramagnetic NMR and residual dipolar couplings, as well as conventional NOEs. Integration of these data in the structure calculation permits delineating accurate ensemble structures of biomacromolecules. Applying the method to the protein yeast ubiquitin hydrolase 1 (YUH1), we find large dynamics of its N-terminus and crossover loop surrounding the active site for ubiquitin-recognition and proteolysis. The N-terminus gets into and out of the crossover loop, suggesting their underlying functional significance. Our results, including those from biochemical analysis, show that large motion surrounding the active site contributes strongly to the efficiency of the enzymatic activity.

Analysis of compressibility data of diatom earth and Ariake clay of similar water holding capacities has been made in this paper. Analysis suggests that in the case of clays with sheet minerals such as in Ariake clays, due to compression, cluster growth takes place, whereas with diatom earth the breakdown of cluster accounts for bilinear compression characteristics. It has been hypothesized that the interactive void ratio in the case of diatom earth is likely to be far smaller than that in the case of Ariake clay where most of the pore water is herd by micropores enclosed by clay particle clusters. In a way diatom earth reflects the behaviour of clay of very law physico-chemical potential with far reduced collapse potential. Even the compressibility at higher stress range both in undisturbed and remolded states are likely to be due to breakdown of clusters with little contribution from the physico - chemical potential. Diatom earth is not a collapsible material at stress levels of engineering interest despite the in -situ water content is at par or even higher than soft sensitive Ariake clay with comparatively low cementation consequently with pronounced collapsible potential.